Citrus Sinensis ID: 024858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEEcccHHHHccc
Coil and Loop (DISEMBL)
mvqlvqkdPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYqgeafngkptktarshgkkfQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQmidpdankacnlGLCLIKRTRYNEARSVLEDVlygripgcedgrTRKRAEELLLELeskqpppdlsdllglnledEFVNGLEEMVRVwapsrskrlpifEEISSFRDRIAC
Flexible Loop (DISEMBL)
mvqlvqkdpEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSfrglcskqsqESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEafngkptktarshgkkfqvsvRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRtrynearsvledvlygripgcedgrTRKRAEELLLEleskqpppdlsdlLGLNLEDEFVNGLEEMVrvwapsrskrlpifeeissfrdriac
Low Complexity Region (SEG)
MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAeellleleSKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Disordered region (IsUnstruct)
**********AAIVLFWKAINAGDRVDSALKDMAVVMKQLDR*EEAIEAIKSFRGLCSK***ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN*****************VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE**************************LLGLNLEDEFVNGLEEMVRVWAPS****LPIF************
Disordered Region (DISOPRED)
*VQ****DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY***********RKRAEELLL******************LEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Disordered Region (DISEMBL)
MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK*****************QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Disordered Region (DISPRO)
*VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELES***********GLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRD**AC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVxxxxxxxxxxxxxxxxxxxxxLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
224065324	309	predicted protein [Populus trichocarpa]	0.996	0.841	0.801	1e-120
255560193	291	conserved hypothetical protein [Ricinus	0.996	0.893	0.786	1e-119
356567884	296	PREDICTED: uncharacterized protein LOC10	0.988	0.871	0.780	1e-116
388491310	301	unknown [Lotus japonicus]	0.988	0.857	0.757	1e-114
147814975	297	hypothetical protein VITISV_025585 [Viti	0.996	0.875	0.747	1e-113
225464225	297	PREDICTED: uncharacterized protein LOC10	0.996	0.875	0.743	1e-113
356567886	296	PREDICTED: uncharacterized protein LOC10	0.988	0.871	0.734	1e-110
356524529	297	PREDICTED: uncharacterized protein LOC10	0.984	0.865	0.738	1e-109
224072650	291	predicted protein [Populus trichocarpa]	0.996	0.893	0.726	1e-109
357505367	300	Male sterility 5 family protein [Medicag	0.984	0.856	0.733	1e-108

>gi|224065324|ref|XP_002301774.1| predicted protein [Populus trichocarpa] gi|222843500|gb|EEE81047.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/262 (80%), Positives = 238/262 (90%), Gaps = 2/262 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLVQKDPEAAIV FWKAINAGD+VDSALKDMAVVMKQ+DR+EEAIEA+KSFRG CSKQ+
Sbjct: 48  AQLVQKDPEAAIVWFWKAINAGDKVDSALKDMAVVMKQIDRTEEAIEAVKSFRGRCSKQA 107

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCGKVEEQIE++KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV+QE
Sbjct: 108 QESLDNVLIDLYKKCGKVEEQIELIKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVKQE 167

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSRLLGNL WAYMQK NF+AAEVVYQKAQMIDPDANKACNL LCLIK+ RY+EARSVL D
Sbjct: 168 TSRLLGNLGWAYMQKPNFIAAEVVYQKAQMIDPDANKACNLALCLIKQARYDEARSVLLD 227

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNL--EDEFVNGLEEMVRVWA 239
           V  GR+PG  D ++R RAEELL+E++S++ P +L+D+LG NL  +D+FV GLE+++  WA
Sbjct: 228 VSQGRLPGSGDVKSRSRAEELLMEVKSRETPDELTDMLGFNLDEDDDFVKGLEKLMSEWA 287

Query: 240 PSRSKRLPIFEEISSFRDRIAC 261
           PSRSKRLPIFEEISSFRD + C
Sbjct: 288 PSRSKRLPIFEEISSFRDPLTC 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560193|ref|XP_002521114.1| conserved hypothetical protein [Ricinus communis] gi|223539683|gb|EEF41265.1| conserved hypothetical protein [Ricinus communis]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/262 (78%), Positives = 238/262 (90%), Gaps = 2/262 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLVQKDPEAAIV FWKAINAGDRVDSALKDMAVVMKQ+DR+EEAIEAIKSFRG CS+ +
Sbjct: 30  AQLVQKDPEAAIVWFWKAINAGDRVDSALKDMAVVMKQVDRTEEAIEAIKSFRGRCSRNA 89

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCGKVEEQI++LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV QE
Sbjct: 90  QESLDNVLIDLYKKCGKVEEQIDLLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVEQE 149

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSRLLGNL WAYMQK+NFMAAEVVY+KAQMIDPDANKA NLG CLI++ RY+EAR +L++
Sbjct: 150 TSRLLGNLGWAYMQKSNFMAAEVVYKKAQMIDPDANKAYNLGFCLIRQARYDEARQILQN 209

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNL--EDEFVNGLEEMVRVWA 239
           VL GR PG  D ++RKRA+ELL+E+ESK PPP+L++ +G+N+  +D+FV G+E+M+  WA
Sbjct: 210 VLEGRFPGSNDCKSRKRAQELLMEMESKLPPPELTNRIGINVDGDDDFVKGIEQMMNKWA 269

Query: 240 PSRSKRLPIFEEISSFRDRIAC 261
           PSR KRLPIFEEISS RD++AC
Sbjct: 270 PSRPKRLPIFEEISSLRDQLAC 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567884|ref|XP_003552145.1| PREDICTED: uncharacterized protein LOC100805188 [Glycine max]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/260 (78%), Positives = 231/260 (88%), Gaps = 2/260 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLV+KDPEAAIVLFWKAIN+GD+VDSALKDMAVVMKQLDRS+EAIEAI+SFR LCSKQS
Sbjct: 39  AQLVEKDPEAAIVLFWKAINSGDKVDSALKDMAVVMKQLDRSDEAIEAIRSFRSLCSKQS 98

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCGK++EQIEMLKRKL+LIYQGEAFNGK TKTARSHGKKFQVS++QE
Sbjct: 99  QESLDNVLIDLYKKCGKIDEQIEMLKRKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQE 158

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSRLLGNL WAYMQK N+M AEVVY+KAQ+IDPD NKACNLGLCLI++ RY EA+ VLED
Sbjct: 159 TSRLLGNLGWAYMQKMNYMMAEVVYRKAQIIDPDCNKACNLGLCLIRQARYEEAQLVLED 218

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPS 241
           VL G +PG +D + RKRA++L  EL S  PPP  SDLLGL+  DEF+ GLE+++  W P 
Sbjct: 219 VLKGNLPGSDDSKARKRAQDLRTELRSMLPPPHFSDLLGLD--DEFIKGLEQLMNEWGPI 276

Query: 242 RSKRLPIFEEISSFRDRIAC 261
           RSKRLPIFEEISSFRD++AC
Sbjct: 277 RSKRLPIFEEISSFRDQLAC 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491310|gb|AFK33721.1| unknown [Lotus japonicus]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/260 (75%), Positives = 229/260 (88%), Gaps = 2/260 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLV+KDPE AI LFW+AIN GD+VDSALKDMAVVMKQLDRSEEAIEAI SFRGLCSKQS
Sbjct: 44  AQLVEKDPEGAIALFWRAINTGDKVDSALKDMAVVMKQLDRSEEAIEAICSFRGLCSKQS 103

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCGK++EQIE+LKRKL+LIY+GEAFNGK TKTARSHGKKFQVS++QE
Sbjct: 104 QESLDNVLIDLYKKCGKIDEQIELLKRKLKLIYEGEAFNGKLTKTARSHGKKFQVSIKQE 163

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSRLLGNL WAYMQK N++ AE VY+KAQMIDPD NKACNLGLCLIK+ RY EA++++ED
Sbjct: 164 TSRLLGNLGWAYMQKMNYVMAEAVYRKAQMIDPDCNKACNLGLCLIKQARYEEAQTIIED 223

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPS 241
           VL G  PG +D +++KRA++LL EL S  PPP  SDLLG  L+DEF+ GLE+++  W P 
Sbjct: 224 VLRGNYPGSDDSKSKKRAQDLLTELRSMLPPPHFSDLLG--LDDEFIKGLEQLINEWGPI 281

Query: 242 RSKRLPIFEEISSFRDRIAC 261
           RS+RLPIFEEISSFRD++AC
Sbjct: 282 RSRRLPIFEEISSFRDQLAC 301

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147814975|emb|CAN74743.1| hypothetical protein VITISV_025585 [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/261 (74%), Positives = 233/261 (89%), Gaps = 1/261 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLV+KDPE AIVLFWKAINAGDRVDSALKDMAVVMKQLDR+EEAIEAIKSFR LCSKQ+
Sbjct: 37  AQLVEKDPEVAIVLFWKAINAGDRVDSALKDMAVVMKQLDRTEEAIEAIKSFRSLCSKQA 96

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCG+++EQI++LK+KLRLIYQGEAFNGKPTKTARSHGKKFQVS++QE
Sbjct: 97  QESLDNVLIDLYKKCGRIDEQIDLLKQKLRLIYQGEAFNGKPTKTARSHGKKFQVSIKQE 156

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSR+LGNL WAYMQK+N+MAAEVVY+KAQMIDPDANKACNL LCLIK+ R +EARS+L +
Sbjct: 157 TSRILGNLGWAYMQKSNYMAAEVVYKKAQMIDPDANKACNLALCLIKQARNSEARSILNE 216

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLS-DLLGLNLEDEFVNGLEEMVRVWAP 240
           VL G IPG ED + + RA+EL+LE+E +  PP     +   +LED+ ++GLE+++  WAP
Sbjct: 217 VLQGNIPGSEDCKAQNRAQELMLEVEPRWLPPSTKMKIARFDLEDDLIDGLEKLLNEWAP 276

Query: 241 SRSKRLPIFEEISSFRDRIAC 261
           SR+KRLPIFEEISS+R+++AC
Sbjct: 277 SRTKRLPIFEEISSYRNQLAC 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464225|ref|XP_002265748.1| PREDICTED: uncharacterized protein LOC100252818 [Vitis vinifera] gi|297744303|emb|CBI37273.3| unnamed protein product [Vitis vinifera]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/261 (74%), Positives = 233/261 (89%), Gaps = 1/261 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLV+KDPE AIVLFWKAINAGDRVDSALKDMAVVMKQLDR+EEAIEAIKSFR LCSKQ+
Sbjct: 37  AQLVEKDPEVAIVLFWKAINAGDRVDSALKDMAVVMKQLDRTEEAIEAIKSFRSLCSKQA 96

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCG+++EQI++LK+KLRLIYQGEAFNGKPTKTARSHGKKFQVS++QE
Sbjct: 97  QESLDNVLIDLYKKCGRIDEQIDLLKQKLRLIYQGEAFNGKPTKTARSHGKKFQVSIKQE 156

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSR+LGNL WAYMQK+N+MAAEVVY+KAQMIDPDANKACNL LCLIK+ R +EARS+L +
Sbjct: 157 TSRILGNLGWAYMQKSNYMAAEVVYKKAQMIDPDANKACNLALCLIKQARNSEARSILNE 216

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLS-DLLGLNLEDEFVNGLEEMVRVWAP 240
           VL G IPG ED + + RA+EL++E+E +  PP     +   +LED+ ++GLE+++  WAP
Sbjct: 217 VLQGNIPGSEDCKAQNRAQELMVEVEPRWLPPSTKMKIARFDLEDDLIDGLEKLLNEWAP 276

Query: 241 SRSKRLPIFEEISSFRDRIAC 261
           SR+KRLPIFEEISS+R+++AC
Sbjct: 277 SRTKRLPIFEEISSYRNQLAC 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567886|ref|XP_003552146.1| PREDICTED: uncharacterized protein LOC100805731 [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/260 (73%), Positives = 228/260 (87%), Gaps = 2/260 (0%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
            QLV KDPEAAIVLFWKAINAGD+VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK S
Sbjct: 39  AQLVDKDPEAAIVLFWKAINAGDKVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKHS 98

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVL+DLYKKCGK+EEQIE+LKRKLRLIYQGEAFNG+ T+TARSHGKKFQVS++QE
Sbjct: 99  QESLDNVLLDLYKKCGKIEEQIELLKRKLRLIYQGEAFNGRTTRTARSHGKKFQVSIKQE 158

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           T+RLLGNL WAYMQK N+M AEVV++KAQM+D DANKACNLGLCL+++ RY EA  +LE+
Sbjct: 159 TARLLGNLGWAYMQKENYMMAEVVFKKAQMVDADANKACNLGLCLMRQCRYEEAYYILEE 218

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPS 241
           VL G+  G ++ ++RKRAEELL EL +  P P+   +  L+L+D+FV G+++M+  W  +
Sbjct: 219 VLQGKHQGSDEIKSRKRAEELLEELNANLPQPEF--MADLDLDDDFVKGIDDMLDAWNTN 276

Query: 242 RSKRLPIFEEISSFRDRIAC 261
           RS+RLPIFEEISSFRD++AC
Sbjct: 277 RSRRLPIFEEISSFRDQLAC 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524529|ref|XP_003530881.1| PREDICTED: uncharacterized protein LOC100788542 [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/260 (73%), Positives = 228/260 (87%), Gaps = 3/260 (1%)

Query: 3   QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
           QLV KDPEAAIVLFWKAIN GD+VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK SQ
Sbjct: 40  QLVDKDPEAAIVLFWKAINCGDKVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKHSQ 99

Query: 63  ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122
           ESLDNVL+DLYKKCGK+EEQIE+LKRKLRLIYQGEAFNG+ T+TARSHGKKFQVS++QET
Sbjct: 100 ESLDNVLLDLYKKCGKIEEQIELLKRKLRLIYQGEAFNGRTTRTARSHGKKFQVSIKQET 159

Query: 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDV 182
           +RLLGNL WAYMQK N+M AEVV++KAQM+D DANKACNLGLCL++++RY EA  +LE+V
Sbjct: 160 ARLLGNLGWAYMQKENYMMAEVVFKKAQMVDADANKACNLGLCLMRQSRYKEAYYILEEV 219

Query: 183 LYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVW-APS 241
           L G IPG ++ ++RKRAEELL EL +  P P+  D LGL+  D+FV G+++++  W   +
Sbjct: 220 LMGIIPGSDEIKSRKRAEELLEELNANLPQPEFMDALGLD--DDFVKGIDDLLDAWNTNN 277

Query: 242 RSKRLPIFEEISSFRDRIAC 261
           R +RLPIFEEISSFRD++AC
Sbjct: 278 RPRRLPIFEEISSFRDQLAC 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072650|ref|XP_002303823.1| predicted protein [Populus trichocarpa] gi|222841255|gb|EEE78802.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/260 (72%), Positives = 226/260 (86%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
           VQLV+KDP AAI LFWKAINAGDRVDSALKDMAVVMKQ DR+EEAIEAIK+FR  CSKQ+
Sbjct: 32  VQLVEKDPGAAIALFWKAINAGDRVDSALKDMAVVMKQQDRAEEAIEAIKAFRDRCSKQA 91

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
           QESLDNVLIDLYKKCG +EEQIE+LK+KLR+I+QGEAFNGK TKTARSHG+KFQV+V+QE
Sbjct: 92  QESLDNVLIDLYKKCGNIEEQIELLKQKLRMIHQGEAFNGKATKTARSHGRKFQVTVKQE 151

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
           TSR+LGNL WAYMQK N++AAEVVY+KAQ IDPDANKACNLGLCLIK+TRY EA++VL+D
Sbjct: 152 TSRILGNLGWAYMQKGNYLAAEVVYRKAQSIDPDANKACNLGLCLIKQTRYAEAQAVLDD 211

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPS 241
           +  G++ G ++ ++R RA+ELL ELE+ Q     S+  G +LED FV GL+++   W P 
Sbjct: 212 IFRGKLLGSDEPKSRNRAQELLCELETSQSSSMFSEPSGSSLEDVFVEGLDQLTSQWTPY 271

Query: 242 RSKRLPIFEEISSFRDRIAC 261
           RS+RLPIFEEISSFRD++AC
Sbjct: 272 RSRRLPIFEEISSFRDQLAC 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505367|ref|XP_003622972.1| Male sterility 5 family protein [Medicago truncatula] gi|355497987|gb|AES79190.1| Male sterility 5 family protein [Medicago truncatula]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/259 (73%), Positives = 228/259 (88%), Gaps = 2/259 (0%)

Query: 3   QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
           QLV+KDPEAAIVLFWKAINAGD+VDSALKDMAVVMKQLDRSEEAIEAI SFRGLCSKQSQ
Sbjct: 44  QLVEKDPEAAIVLFWKAINAGDKVDSALKDMAVVMKQLDRSEEAIEAISSFRGLCSKQSQ 103

Query: 63  ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122
           ESLDNVLIDLYKKCGK++E+I++LK+KL+LIYQGEAFNGK TKTARSHGKKFQVS++QET
Sbjct: 104 ESLDNVLIDLYKKCGKIDEEIDLLKQKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQET 163

Query: 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDV 182
           SRLLGNL WAYMQK N++ AE VY+KAQMIDPD NKACNLGLCLI++ RY EA+ +++D+
Sbjct: 164 SRLLGNLGWAYMQKMNYVMAEAVYRKAQMIDPDCNKACNLGLCLIRQARYEEAQLIIDDI 223

Query: 183 LYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSR 242
           L G +PG +D +++KRA++LL EL S  P P   D+L ++  DEF+ G+E+++  W P R
Sbjct: 224 LKGELPGSDDIKSKKRAQDLLEELRSLLPTPCPLDILVMD--DEFIKGIEQLMNEWGPVR 281

Query: 243 SKRLPIFEEISSFRDRIAC 261
           SKRLPIFEEISS RD++AC
Sbjct: 282 SKRLPIFEEISSCRDQLAC 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2156574	306	ATSDI1 "SULPHUR DEFICIENCY-IND	0.984	0.839	0.679	3.1e-90
TAIR|locus:2010612	303	AT1G04770 "AT1G04770" [Arabido	0.996	0.858	0.615	1.4e-78
TAIR|locus:2080858	430	AT3G51280 "AT3G51280" [Arabido	0.693	0.420	0.685	1e-61
TAIR|locus:2158750	469	AT5G44330 [Arabidopsis thalian	0.689	0.383	0.538	9.8e-48
TAIR|locus:2133099	450	MS5 "MALE-STERILE 5" [Arabidop	0.689	0.4	0.5	3.4e-45
TAIR|locus:4515103601	237	AT5G22794 "AT5G22794" [Arabido	0.256	0.282	0.716	3e-21
TAIR|locus:2031035	230	AT1G49940 "AT1G49940" [Arabido	0.114	0.130	0.6	0.00012

TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 178/262 (67%), Positives = 212/262 (80%)

Query:     3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
             QL++K+PE AIV FWKAIN GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR  CSK SQ
Sbjct:    47 QLIEKNPEMAIVWFWKAINTGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRPRCSKNSQ 106

Query:    63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122
             +SLDNVLIDLYKKCG++EEQ+E+LKRKLR IYQGEAFNGKPTKTARSHGKKFQV+V+QE 
Sbjct:   107 DSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGEAFNGKPTKTARSHGKKFQVTVQQEI 166

Query:   123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDV 182
             SRLLGNL WAYMQ+  +++AE VY+KAQM++PDANK+CNL +CLIK+ R+ E R VL+DV
Sbjct:   167 SRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKSCNLAMCLIKQGRFEEGRLVLDDV 226

Query:   183 LYGRIPGCEDGRTRKRAXXXXXXXXSKQP---PPDLSDLLGLNLEDEFVNGLEEMVRVWA 239
             L  R+ G +D RTR+RA        S  P     ++ D+LG  L+D+FV GLEEM     
Sbjct:   227 LEYRVLGADDCRTRQRAEELLSELESSLPRMRDAEMEDVLGNILDDDFVLGLEEMTST-- 284

Query:   240 PSRSKRLPIFEEISSFRDRIAC 261
               +SKRLPIFE+ISSFR+ + C
Sbjct:   285 SFKSKRLPIFEQISSFRNTLVC 306

GO:0005634 "nucleus" evidence=ISM

GO:0006792 "regulation of sulfur utilization" evidence=IMP

GO:0010438 "cellular response to sulfur starvation" evidence=IEP

TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 163/265 (61%), Positives = 201/265 (75%)

Query:     2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
             VQLV+KD EAAI LFW AI A DRVDSALKDMA++MKQ +R+EEAI+AI+SFR LCS+Q+
Sbjct:    39 VQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLMKQQNRAEEAIDAIQSFRDLCSRQA 98

Query:    62 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
             QESLDNVLIDLYKKCG++EEQ+E+LK+KL +IYQGEAFNGKPTKTARSHGKKFQV+V +E
Sbjct:    99 QESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNGKPTKTARSHGKKFQVTVEKE 158

Query:   122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVL-E 180
             TSR+LGNL WAYMQ  ++ AAE VY+KAQ+I+PDANKACNL  CLIK+ +++EARS+L  
Sbjct:   159 TSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNLCTCLIKQGKHDEARSILFR 218

Query:   181 DVLYGRIPGCEDGRTRKRAXXXXXXXXSKQPPPDLSDLLGLNLE-DEF--VNGLEEMVRV 237
             DVL     G  D R   R          ++     S  +   +  DE   V GL+E V+ 
Sbjct:   219 DVLMENKEGSGDPRLMARVQELLSELKPQEEEAAASVSVECEVGIDEIAVVEGLDEFVKE 278

Query:   238 WA-PSRSKRLPIFEEISSFRDRIAC 261
             W  P R++RLPIFEEI   RD++AC
Sbjct:   279 WRRPYRTRRLPIFEEILPLRDQLAC 303

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 124/181 (68%), Positives = 148/181 (81%)

Query:     2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
             VQLV+KDPE AI LFWKAINAGDRVDSALKDMA+VMKQ +R+EEAIEAIKS R  CS Q+
Sbjct:    49 VQLVEKDPERAIPLFWKAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRVRCSDQA 108

Query:    62 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
             QESLDN+L+DLYK+CG++++QI +LK KL LI +G AFNGK TKTARS GKKFQVSV QE
Sbjct:   109 QESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQKGLAFNGKRTKTARSQGKKFQVSVEQE 168

Query:   122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 181
              +RLLGNL WA MQ+ NF+ AE  Y++A  I PD NK CNLG+CL+K+ R +EA+  L  
Sbjct:   169 ATRLLGNLGWALMQRDNFVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIDEAKETLRR 228

Query:   182 V 182
             V
Sbjct:   229 V 229

GO:0005575 "cellular_component" evidence=ND

GO:0042802 "identical protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 97/180 (53%), Positives = 131/180 (72%)

Query:     3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
             QLV KDP  AI LFW AINAGDRVDSALKDM VV+KQL+R +E IEAIKSFR LC  +SQ
Sbjct:    64 QLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGIEAIKSFRYLCPFESQ 123

Query:    63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122
             +S+DN+L++LY K G++ E  E+L+ KLR + Q + + G+     RSH ++   ++ QE 
Sbjct:   124 DSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAKRSHEEQNNKTIEQEK 183

Query:   123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDV 182
             +R+LGNLAW ++Q  N+  AE  Y+ A  ++PD NK CNL +CLI+  R +EA+S+LEDV
Sbjct:   184 ARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMERTHEAKSLLEDV 243

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 98/196 (50%), Positives = 135/196 (68%)

Query:     3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 62
             QL+ KDP  AI LFW AINAGDRVDSALKDMAVVMKQL RS+E IEAIKSFR LCS +SQ
Sbjct:    71 QLIDKDPNRAISLFWTAINAGDRVDSALKDMAVVMKQLGRSDEGIEAIKSFRYLCSFESQ 130

Query:    63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 122
             +S+DN+L++LYKK G++EE+  +L+ KL+ + QG  F G+ ++  R  GK   +++ QE 
Sbjct:   131 DSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQGMGFGGRVSRAKRVQGKHVIMTIEQEK 190

Query:   123 SRLLGNLAWAYMQKTNFMAAEVVYQ----------------KAQMIDPDANKACNLGLCL 166
             +R+LGNL W ++Q  N+  AE  Y+                +A  ++ D NK CNL +CL
Sbjct:   191 ARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIPNIDYCLVMRALGLERDKNKLCNLAICL 250

Query:   167 IKRTRYNEARSVLEDV 182
             ++ +R  EA+S+L+DV
Sbjct:   251 MRMSRIPEAKSLLDDV 266

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009556 "microsporogenesis" evidence=IMP

TAIR|locus:4515103601 AT5G22794 "AT5G22794" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/67 (71%), Positives = 59/67 (88%)

Query:    60 QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119
             Q+QESL+NVLIDLYKK G+ EEQ+E+LK +L +IYQ EAFNGKP K ARSHG+KFQV+V 
Sbjct:    71 QAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVE 130

Query:   120 QETSRLL 126
             +ETSR+L
Sbjct:   131 KETSRML 137

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031035 AT1G49940 "AT1G49940" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query:    92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
             +IYQ EAFNGKP K ARSHG+ F+   R++
Sbjct:     1 MIYQEEAFNGKPAKIARSHGRNFRSRSRRK 30

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II002416 hypothetical protein (309 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 183
           NL   Y +  ++  A   Y+KA  +DPD   A  NL     K  +Y EA    E  L
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVL 179
           + +    NLA AY +   +  A   Y+KA  +DPD  KA  NLGL   K  +Y EA    
Sbjct: 32  DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 180 EDVL 183
           E  L
Sbjct: 92  EKAL 95

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
PRK12370	553	invasion protein regulator; Provisional	99.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.78
PRK12370	553	invasion protein regulator; Provisional	99.78
PRK15359	144	type III secretion system chaperone protein SscB;	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
PRK11189	296	lipoprotein NlpI; Provisional	99.74
KOG1125	579	consensus TPR repeat-containing protein [General f	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.73
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.72
KOG1126	638	consensus DNA-binding cell division cycle control	99.71
KOG1126	638	consensus DNA-binding cell division cycle control	99.71
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.71
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.7
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.66
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.66
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.65
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.65
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.56
PRK14574	822	hmsH outer membrane protein; Provisional	99.56
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.55
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.54
PLN02789	320	farnesyltranstransferase	99.54
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.53
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.51
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.51
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.5
KOG0553	304	consensus TPR repeat-containing protein [General f	99.49
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.49
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.46
PLN02789	320	farnesyltranstransferase	99.44
KOG2003	840	consensus TPR repeat-containing protein [General f	99.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
KOG1125	579	consensus TPR repeat-containing protein [General f	99.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.38
KOG0553	304	consensus TPR repeat-containing protein [General f	99.34
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.33
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.32
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.3
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.3
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.29
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.28
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.27
KOG1129	478	consensus TPR repeat-containing protein [General f	99.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.26
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.26
KOG1129	478	consensus TPR repeat-containing protein [General f	99.25
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.25
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.23
PRK14574	822	hmsH outer membrane protein; Provisional	99.23
KOG2076	895	consensus RNA polymerase III transcription factor	99.19
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.16
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.15
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.14
KOG2076	895	consensus RNA polymerase III transcription factor	99.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.11
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
PF12688	120	TPR_5: Tetratrico peptide repeat	99.09
KOG2003	840	consensus TPR repeat-containing protein [General f	99.08
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
PRK15331	165	chaperone protein SicA; Provisional	99.07
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.06
PLN03218	1060	maturation of RBCL 1; Provisional	99.06
PRK10803	263	tol-pal system protein YbgF; Provisional	99.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.04
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.04
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.02
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.01
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.0
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.0
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.0
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.98
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.98
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.98
PLN03218	1060	maturation of RBCL 1; Provisional	98.98
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.97
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.97
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.95
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.94
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.94
PF12688	120	TPR_5: Tetratrico peptide repeat	98.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.93
PRK10803	263	tol-pal system protein YbgF; Provisional	98.93
PRK11906	458	transcriptional regulator; Provisional	98.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.91
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.91
PLN03077	857	Protein ECB2; Provisional	98.91
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.9
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.9
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.89
PRK15331	165	chaperone protein SicA; Provisional	98.88
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.87
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.85
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.83
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.81
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.79
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.79
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.78
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.69
PRK04841	903	transcriptional regulator MalT; Provisional	98.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.68
PLN03077	857	Protein ECB2; Provisional	98.65
PRK04841	903	transcriptional regulator MalT; Provisional	98.62
PF13512	142	TPR_18: Tetratricopeptide repeat	98.62
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.59
PRK11906	458	transcriptional regulator; Provisional	98.58
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.55
PF13428	44	TPR_14: Tetratricopeptide repeat	98.53
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.46
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.38
PF13512	142	TPR_18: Tetratricopeptide repeat	98.38
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.35
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.34
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.31
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.31
PF13431	34	TPR_17: Tetratricopeptide repeat	98.3
KOG4234	271	consensus TPR repeat-containing protein [General f	98.29
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.28
PF13431	34	TPR_17: Tetratricopeptide repeat	98.28
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.27
KOG4234	271	consensus TPR repeat-containing protein [General f	98.27
KOG4555	175	consensus TPR repeat-containing protein [Function	98.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.22
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.2
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.15
KOG4555	175	consensus TPR repeat-containing protein [Function	98.14
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.08
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.04
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.01
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.98
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.98
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.97
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.96
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.94
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.94
KOG1586	288	consensus Protein required for fusion of vesicles	97.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.92
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.89
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.86
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.85
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.83
PF13428	44	TPR_14: Tetratricopeptide repeat	97.78
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.77
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.75
KOG1585	308	consensus Protein required for fusion of vesicles	97.73
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.69
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.65
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.63
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.59
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.54
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.5
KOG1585	308	consensus Protein required for fusion of vesicles	97.48
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.46
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.42
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.37
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.37
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.37
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.36
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.31
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.27
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.26
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.19
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.17
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.14
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.13
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.08
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.02
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.02
KOG1586	288	consensus Protein required for fusion of vesicles	97.0
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.98
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.98
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.94
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.92
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.86
KOG2471	696	consensus TPR repeat-containing protein [General f	96.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.82
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.81
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.78
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.74
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.71
PRK10941	269	hypothetical protein; Provisional	96.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.63
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.56
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.53
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.33
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.29
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.26
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.12
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.99
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.94
PRK10941	269	hypothetical protein; Provisional	95.86
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.83
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.81
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.68
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.64
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.59
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.59
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.49
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.43
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.38
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.26
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	95.05
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.83
KOG2471	696	consensus TPR repeat-containing protein [General f	94.72
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.64
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.48
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.37
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.35
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.2
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.11
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.02
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	93.98
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.7
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.61
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.58
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.5
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.36
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.3
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.19
KOG3364	149	consensus Membrane protein involved in organellar	93.17
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.16
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.7
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.5
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.42
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.11
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.92
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.88
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.65
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.62
PF12854	34	PPR_1: PPR repeat	91.43
PF12854	34	PPR_1: PPR repeat	91.31
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.3
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.22
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	91.16
COG2912	269	Uncharacterized conserved protein [Function unknow	91.11
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.99
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	90.92
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.86
COG2912	269	Uncharacterized conserved protein [Function unknow	90.7
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.69
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.56
KOG2300	629	consensus Uncharacterized conserved protein [Funct	90.53
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	90.4
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.37
KOG1310	758	consensus WD40 repeat protein [General function pr	89.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.07
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.74
COG3947	361	Response regulator containing CheY-like receiver a	88.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	88.29
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.06
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	87.77
KOG1258	577	consensus mRNA processing protein [RNA processing	87.72
KOG2581	493	consensus 26S proteasome regulatory complex, subun	87.33
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.2
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	87.15
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.72
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	86.16
PF13041	50	PPR_2: PPR repeat family	85.91
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	85.7
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.53
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	85.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.33
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	85.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.0
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.92
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	84.67
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.56
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	84.53
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.14
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	84.04
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.76
KOG3364	149	consensus Membrane protein involved in organellar	83.38
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	83.38
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.22
smart00299	140	CLH Clathrin heavy chain repeat homology.	81.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	81.72
PF13041	50	PPR_2: PPR repeat family	80.96
COG3947	361	Response regulator containing CheY-like receiver a	80.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	80.76

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2e-23  Score=190.25  Aligned_cols=176  Identities=22%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      +.+++|+.+|.+|+...|+++.++-+||.+|..+|..+-||..|++++.+.|+.  ....++|++.+...|+..||+.+|
T Consensus       266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF--PDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHHhccchHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555552  223444555555555555555555


Q ss_pred             HHHHHhhcch-hhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           87 KRKLRLIYQG-EAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        87 ~~al~l~~~~-~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      .++|.+.|.- .+.+ +.....+..++      .+.  +++.|+++.+++|||.+|.++|++++|+.+|++|+.++|..+
T Consensus       344 nkaL~l~p~hadam~-NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA  422 (966)
T KOG4626|consen  344 NKALRLCPNHADAMN-NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA  422 (966)
T ss_pred             HHHHHhCCccHHHHH-HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence            5555554321 1111 01111111111      011  345566677777777777777777777777777777777777


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      + +.|+|++|-++|+.++|++.|.+++..
T Consensus       423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             HHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            7 667777777777777777777777776

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=7.8e-24  Score=192.85  Aligned_cols=179  Identities=19%  Similarity=0.158  Sum_probs=96.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      .+|++.+|..+|.+||..+|..+-+|.+||.++..+|...+||..|+++++++|..  ...+.+||++|.+.+++++|+.
T Consensus       196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f--~dAYiNLGnV~ke~~~~d~Avs  273 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF--LDAYINLGNVYKEARIFDRAVS  273 (966)
T ss_pred             hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc--hHHHhhHHHHHHHHhcchHHHH
Confidence            45666666666666666666666666666666666666666666666666666653  2234446666666666666666


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      +|.+++.+.|......|+..-....+|      ..+.  +++.|+++++++|||.++...|+..||+.+|.+||.+.|++
T Consensus       274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h  353 (966)
T KOG4626|consen  274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH  353 (966)
T ss_pred             HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence            666666654422111111000000000      1111  44555555555555555555555555555555555555555


Q ss_pred             hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++ .+|||+++.++|.+++|..+|++++..
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v  383 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEV  383 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            55 555555555555555555555555554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=2.8e-19  Score=171.45  Aligned_cols=227  Identities=15%  Similarity=0.100  Sum_probs=163.2

Q ss_pred             cCCHHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            6 QKDPEAAIVLFWKAINA---GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~---~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+++++|+.+|++++..   +|....++..+|.++..+|++++|+..+++++.++|+..  ..+..+|.+|...|++++|
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHCCCHHHH
Confidence            46788888888888865   477777888888888888888888888888888888743  3445578888888888888


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      +..|++++++.|... .+.. ........+      ..+.  +.+.|++..++.++|.++.++|++++|+..|++++...
T Consensus       385 ~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       385 EEDFDKALKLNSEDPDIYYH-RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            888888888765332 1110 000000001      1111  56788999999999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----------------chhhHHHHHHHHHHHHhcCC-CCc
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-----------------DGRTRKRAEELLLELESKQP-PPD  214 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~-----------------~~~~~~~a~~~l~~l~~~~~-~~~  214 (261)
                      |+++. +.++|.++..+|++++|+..|++++...+....                 ....++.|...+.......| +..
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~  543 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI  543 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            99998 889999999999999999999999997432111                 02455566666666433333 333


Q ss_pred             hhhhcccch-----hHHHHHHHHHHH
Q 024858          215 LSDLLGLNL-----EDEFVNGLEEMV  235 (261)
Q Consensus       215 ~~~~~~~~~-----~d~~~~~~~~~l  235 (261)
                      +...+|..+     +++++..|+..+
T Consensus       544 a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       544 AVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            444556555     366666666654

>PRK12370 invasion protein regulator; Provisional

Probab=99.80  E-value=3.1e-18  Score=162.27  Aligned_cols=176  Identities=10%  Similarity=-0.037  Sum_probs=107.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC   76 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~---------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~   76 (261)
                      .+++++|+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++  ..+..+|.++...
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~  351 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHc
Confidence            34577899999999999999999999998877643         347899999999999999854  3456688888999


Q ss_pred             CCHHHHHHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           77 GKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        77 g~~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      |++++|+..|+++++++|... ++.. ........++      .+.  +.++|+++.++..++.++..+|++++|+..++
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYY-YGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            999999999999998865221 1100 0000000000      000  33444444444444444444555555555555


Q ss_pred             HHHhhC-CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          148 KAQMID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       148 ~al~~~-P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +++... |+++. +.++|.+|..+|++++|...+++++.
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence            555443 34444 44455555555555555555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=1.2e-17  Score=161.13  Aligned_cols=236  Identities=14%  Similarity=0.089  Sum_probs=171.3

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      .++..|++++|+..|++++..+|+++.++..+|.++.++|++++|+..++++++++|++.  .....++.+|...|++++
T Consensus        85 ~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--~a~~~la~~l~~~g~~~e  162 (656)
T PRK15174         85 SPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--QIFALHLRTLVLMDKELQ  162 (656)
T ss_pred             hHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCChHH
Confidence            356789999999999999999999999999999999999999999999999999999843  355668888999999999


Q ss_pred             HHHHHHHHHHhhcchh-hhc--------CcchH-------------------------HHhhchh------hhh--hhcC
Q 024858           82 QIEMLKRKLRLIYQGE-AFN--------GKPTK-------------------------TARSHGK------KFQ--VSVR  119 (261)
Q Consensus        82 A~~~~~~al~l~~~~~-~~~--------~~~~~-------------------------~~~~~~~------~~~--~~l~  119 (261)
                      |+..+++++...|... ++.        +....                         .....+.      .+.  +.+.
T Consensus       163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~  242 (656)
T PRK15174        163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG  242 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999988877654321 110        10000                         0000010      011  4678


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---
Q 024858          120 QETSRLLGNLAWAYMQKTNFMA----AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---  191 (261)
Q Consensus       120 p~~~~~~~~Lg~~~~~~g~~~e----A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~---  191 (261)
                      |+++.++.+||.+|..+|++++    |+..|+++++++|++.. +.++|.++..+|++++|+.++++++...+..+.   
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999986    89999999999999998 889999999999999999999999997432221   


Q ss_pred             -------chhhHHHHHHHHHHHHhcCCCC-chhhhcccch-----hHHHHHHHHHHHHhhc
Q 024858          192 -------DGRTRKRAEELLLELESKQPPP-DLSDLLGLNL-----EDEFVNGLEEMVRVWA  239 (261)
Q Consensus       192 -------~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~-----~d~~~~~~~~~l~~~~  239 (261)
                             ..+.++.|...+..+....|.. ......|..+     .++..+.|+..+...+
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence                   2355566777776665444432 2222122222     4777777777665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=2.2e-17  Score=136.65  Aligned_cols=157  Identities=22%  Similarity=0.202  Sum_probs=141.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+..+.+++..+|++..++..+|.++..+|++++|++.+++++...|.+.  .....++.+|...|++++|
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~A  118 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQA  118 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHHH
Confidence            45689999999999999999999999999999999999999999999999999999843  3556689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +..+++++...+                        .|.....+.++|.++...|++++|...|.+++..+|++.. +..
T Consensus       119 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  174 (234)
T TIGR02521       119 MQQFEQAIEDPL------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE  174 (234)
T ss_pred             HHHHHHHHhccc------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence            999999987521                        1224567899999999999999999999999999999998 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|.++...|++++|..++++++..
T Consensus       175 la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       175 LAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999986

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.80  E-value=1.8e-17  Score=135.96  Aligned_cols=157  Identities=23%  Similarity=0.143  Sum_probs=144.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      +|..||+..|...+++||+.||++..+|..++.+|..+|..+-|-+.|+++++++|++  ..+.|+.|..+..+|++++|
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--GDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--cchhhhhhHHHHhCCChHHH
Confidence            5789999999999999999999999999999999999999999999999999999994  45677789999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      .+.|++++.. |.                       -|+.++++-|+|+|-.++|+++.|...|+++|+++|+++. ...
T Consensus       123 ~q~F~~Al~~-P~-----------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~  178 (250)
T COG3063         123 MQQFERALAD-PA-----------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE  178 (250)
T ss_pred             HHHHHHHHhC-CC-----------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence            9999999984 30                       1345679999999999999999999999999999999998 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++....+.|+|-+|..++++....
T Consensus       179 ~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         179 LARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhc
Confidence            999999999999999999998875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.79  E-value=1.6e-17  Score=159.34  Aligned_cols=192  Identities=16%  Similarity=0.087  Sum_probs=146.0

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHH---HcCCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           13 IVLFWKAINAGDRVDSALKDMAVVMK---QLDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus        13 ~~~~~~al~~~p~~~~al~~Lg~~~~---~~g~~~eAi~~~~~~~~~~---P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      ...+...+..+|.....+..+|....   ..+++++|++.|++++..+   |.  ....++.+|.+|..+|++++|+..|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~--~a~a~~~lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK--EAIALNLRGTFKCLKGKHLEALADL  354 (615)
T ss_pred             hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34456677788888888888887654   4589999999999999864   55  3345677899999999999999999


Q ss_pred             HHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           87 KRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        87 ~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      ++++++.|... .+... .......+      ..+.  +.+.|++++++.++|.++..+|++++|+..|++++.++|++.
T Consensus       355 ~kal~l~P~~~~~~~~l-a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       355 SKSIELDPRVTQSYIKR-ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHHcCCCcHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            99999876422 22100 00000001      1111  578899999999999999999999999999999999999999


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHH
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELE  207 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~  207 (261)
                      . +.++|.++.++|++++|+..|++++...+..+.          ..+.++.|...+....
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            8 999999999999999999999999987332221          2345566666666543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.78  E-value=2.9e-17  Score=163.12  Aligned_cols=179  Identities=12%  Similarity=0.063  Sum_probs=144.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...|++++|+..|++++...|.. .++..+|.++.+.|++++|+.+++++++.+|+..  .+...++..+...|++++|+
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~--~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN--ALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhCCCHHHHH
Confidence            46899999999999988776664 4578899999999999999999999999998842  23333454455669999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      ..|++++++.|....+.+. .......+.      .+.  +.+.|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus       597 ~~~~~AL~l~P~~~a~~~L-A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        597 NDLTRSLNIAPSANAYVAR-ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999999988753333210 011111111      121  6889999999999999999999999999999999999999


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      ++. +.++|.++..+|++++|+..|++++...
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999 9999999999999999999999999984

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.78  E-value=4.3e-17  Score=157.18  Aligned_cols=197  Identities=15%  Similarity=0.053  Sum_probs=128.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH-
Q 024858            4 LVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE-   81 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e-   81 (261)
                      +..|++++|+..|++++..+| ........++.++...|++++|+..+++++..+|+++  ...+.+|.+|...|++++ 
T Consensus       188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--ALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCchhh
Confidence            456777777777777666654 2233334456666677777777777777777777632  344456777777777764 


Q ss_pred             ---HHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           82 ---QIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        82 ---A~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                         |+..|++++++.|... ++.. ........+      ..+.  +.+.|+++.++.++|.+|.++|++++|+..|+++
T Consensus       266 ~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        266 KLQAAEHWRHALQFNSDNVRIVTL-YADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               6777777777654321 1110 000000000      0011  4556788889999999999999999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  205 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~  205 (261)
                      +..+|++.. ...+|.++...|++++|+..|++++...+...  +..++.+...+..
T Consensus       345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~  399 (656)
T PRK15174        345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDG  399 (656)
T ss_pred             HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHH
Confidence            999999887 66778999999999999999999998733222  3334445544444

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=2.7e-17  Score=155.87  Aligned_cols=175  Identities=14%  Similarity=-0.039  Sum_probs=142.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .+++++|+..++++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++  ..+..+|.+|...|++++|+..
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence            46689999999999999999999999999999999999999999999999999954  3556689999999999999999


Q ss_pred             HHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           86 LKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSV-RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        86 ~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l-~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      ++++++++|... +...... .....++      .+.  +.. .|+++.++.++|.+|..+|++++|...++++....|+
T Consensus       395 ~~~Al~l~P~~~~~~~~~~~-~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~  473 (553)
T PRK12370        395 INECLKLDPTRAAAGITKLW-ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT  473 (553)
T ss_pred             HHHHHhcCCCChhhHHHHHH-HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence            999999987532 1110000 0000111      111  222 4788999999999999999999999999999999999


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.. +..|+.+|...|  ++|...+++++..
T Consensus       474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             hHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            888 888999999988  4888888887774

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.77  E-value=1.1e-17  Score=131.50  Aligned_cols=127  Identities=8%  Similarity=-0.105  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      -+.+|+++++.+|++   +..+|.++.+.|++++|+..|++++..+|.+  ...+..+|.++...|++++|+..|+++++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            467899999999886   5568999999999999999999999999984  34566689999999999999999999988


Q ss_pred             hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858           92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  169 (261)
Q Consensus        92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~  169 (261)
                      +.                          |+++.+++++|.++..+|++++|+..|++++.+.|+++. +.++|.+....
T Consensus        87 l~--------------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         87 LD--------------------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            74                          467789999999999999999999999999999999998 77888776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=1.6e-16  Score=157.91  Aligned_cols=230  Identities=14%  Similarity=0.069  Sum_probs=171.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..+++++|+..|.+++...|+.. ....+|.++.+.|++++|+..++++....|.+  .. ...+|.++.+.|++++|+.
T Consensus       488 ~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~--~a-~~~la~all~~Gd~~eA~~  563 (987)
T PRK09782        488 RDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN--ED-LLAAANTAQAAGNGAARDR  563 (987)
T ss_pred             HhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--HH-HHHHHHHHHHCCCHHHHHH
Confidence            34789999999999999999754 46667888889999999999999988776653  22 3457888999999999999


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      .|++++++.|................+.      .+.  +.+.|+ +.++.++|.++.++|++++|+..|++++.++|++
T Consensus       564 ~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~  642 (987)
T PRK09782        564 WLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN  642 (987)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999865332111000000000011      111  578897 8999999999999999999999999999999999


Q ss_pred             hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCC-CCchhhhcccch-
Q 024858          157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-  223 (261)
Q Consensus       157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~-  223 (261)
                      +. +.++|.++..+|++++|+.+|++++...|.++.          ..+.++.|...+.......| .+...+.+|..+ 
T Consensus       643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            99 999999999999999999999999998432221          24556677777777544444 577788888776 


Q ss_pred             -hHHHHHHHHHHHHhhc
Q 024858          224 -EDEFVNGLEEMVRVWA  239 (261)
Q Consensus       224 -~d~~~~~~~~~l~~~~  239 (261)
                       ..+|-...+.+-++|.
T Consensus       723 ~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        723 QRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence             2344444444544553

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.75  E-value=4.4e-16  Score=140.77  Aligned_cols=233  Identities=17%  Similarity=0.132  Sum_probs=157.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHcCCHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~~~~~~~~L~~ly~~~g~~~   80 (261)
                      .+..|++++|+..|++++..+|++..++..+|.++..+|++++|+..+++++...+..  ........+|.+|...|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            3567999999999999999999999999999999999999999999999988753321  12234567899999999999


Q ss_pred             HHHHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           81 EQIEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQET-----SRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~-----~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      +|+..|+++++..+... ++.. ........++      .+.  +...|++     ...+.++|.++..+|++++|+..|
T Consensus       125 ~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEGDFAEGALQQ-LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCCcchHHHHHH-HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999998644321 1110 0000000000      111  2233433     224567888888888888888888


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----------chhhHHHHHHHHHHHHhcCCCCc
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-----------DGRTRKRAEELLLELESKQPPPD  214 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~-----------~~~~~~~a~~~l~~l~~~~~~~~  214 (261)
                      +++++.+|++.. +..+|.++...|++++|+.++++++..++....           ..+..+.+...+..+....|+..
T Consensus       204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            888888888887 778888888888888888888888875221100           12345556666666544444433


Q ss_pred             hhhhcccch-----hHHHHHHHHHHHH
Q 024858          215 LSDLLGLNL-----EDEFVNGLEEMVR  236 (261)
Q Consensus       215 ~~~~~~~~~-----~d~~~~~~~~~l~  236 (261)
                      ....++..+     ++++...|...+.
T Consensus       284 ~~~~la~~~~~~g~~~~A~~~l~~~l~  310 (389)
T PRK11788        284 LLLALAQLLEEQEGPEAAQALLREQLR  310 (389)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            333334333     3455555555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=2.4e-16  Score=160.84  Aligned_cols=182  Identities=14%  Similarity=0.124  Sum_probs=135.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH------------HHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE------------SLDNVLI   70 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~------------~~~~~L~   70 (261)
                      .+..|++++|+..|+++++.+|++++++..||.++.++|++++|+..++++++.+|++...            .....++
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            4567999999999999999999999999999999999999999999999999999974211            1123457


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHH--------
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAY--------  133 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~--------  133 (261)
                      .++.+.|++++|+..|++++++.|... ++.+ ........+      ..+.  +.+.|+++.++.+++.+|        
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~-Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNTDSYAVLG-LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence            888999999999999999999865322 1110 001111111      1111  466677777777666554        


Q ss_pred             ----------------------------------HHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHH
Q 024858          134 ----------------------------------MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV  178 (261)
Q Consensus       134 ----------------------------------~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~  178 (261)
                                                        ..+|++++|+..|+++++++|+++. ++.+|.+|..+|++++|+..
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~  517 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL  517 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                              2467777777778888888887777 77777778888888888888


Q ss_pred             HHHHHhC
Q 024858          179 LEDVLYG  185 (261)
Q Consensus       179 ~~~~l~~  185 (261)
                      |++++..
T Consensus       518 l~~al~~  524 (1157)
T PRK11447        518 MRRLAQQ  524 (1157)
T ss_pred             HHHHHHc
Confidence            8777775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.74  E-value=1.3e-16  Score=139.87  Aligned_cols=180  Identities=11%  Similarity=-0.056  Sum_probs=133.6

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +....|++++|+..|.++++.+|+++.++.++|.++...|++++|++.++++++++|++.  .....+|.+|...|++++
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~e  150 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAYLNRGIALYYGGRYEL  150 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHH
Confidence            345679999999999999999999999999999999999999999999999999999953  345568999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhch------hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA------  149 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a------  149 (261)
                      |++.+++++++.|.+.... .........+      ..+...+...+++.|. .+.++...|+..++ ..+..+      
T Consensus       151 A~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~  227 (296)
T PRK11189        151 AQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATD  227 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCC
Confidence            9999999999876432110 0000000000      0111111222233333 46666777777554 233333      


Q ss_pred             -HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          150 -QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       150 -l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                       .+++|+... +++||.++.++|++++|+.+|++++..+
T Consensus       228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence             366677777 9999999999999999999999999983

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=4.9e-17  Score=147.87  Aligned_cols=182  Identities=17%  Similarity=0.138  Sum_probs=145.5

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ..+.+|++.+|.-+|+.|++.+|.+.++|..||.+....+.-..||.+++++++++|+  +..+...|+..|...|--.+
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT--NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--cHHHHHHHHHHHhhhhhHHH
Confidence            4678999999999999999999999999999999999999999999999999999999  45567789999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhc-----Cc-------chHHHhhch-hhhh--hhcCC--CcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           82 QIEMLKRKLRLIYQGEAFN-----GK-------PTKTARSHG-KKFQ--VSVRQ--ETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~-----~~-------~~~~~~~~~-~~~~--~~l~p--~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      |..++.+-++..|+-....     ..       .......+- ..|.  ....|  .++++...||.+|...|+|+.|+.
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            9999999998765321111     00       000000000 0111  23345  567888888888888888888888


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|+.||..+|++.. |..||-++....+.+||+..|.+++..
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL  493 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL  493 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence            88888888888888 888888888888888888888888887

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.73  E-value=1.6e-15  Score=148.57  Aligned_cols=180  Identities=18%  Similarity=0.128  Sum_probs=125.4

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...|++++|+..|.++++.+|++..++..+|.++...|++++|++.+++++..+|++  ......++.+|...|++++|+
T Consensus       476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~  553 (899)
T TIGR02917       476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--LRAILALAGLYLRTGNEEEAV  553 (899)
T ss_pred             HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHcCCHHHHH
Confidence            445677777777777777777777777777777777777777777777777777763  234445677777777777777


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      ..++++++..|................+.      .+.  +...|+++.++..+|.+|...|++++|+..|+++++.+|+
T Consensus       554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  633 (899)
T TIGR02917       554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD  633 (899)
T ss_pred             HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            77777776644321100000000000110      111  3456788888889999999999999999999999998888


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++. +..+|.++...|++++|+.+|++++..
T Consensus       634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  664 (899)
T TIGR02917       634 SALALLLLADAYAVMKNYAKAITSLKRALEL  664 (899)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            888 888899999999999999999888886

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.72  E-value=4.8e-16  Score=152.31  Aligned_cols=178  Identities=16%  Similarity=0.163  Sum_probs=118.4

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...|++++|+..+.......|..+..+..+|.++...|++++|++.|++++...|++  . ....++.+|.+.|++++|+
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--Q-NAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--h-HHHHHHHHHHHCCCHHHHH
Confidence            456777777777777777777777777777777777777777777777777777763  2 2334667777777777777


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      +.++++++..|................+      ..+.  +...|+++.++.++|+++...|+ .+|+..+++++.+.|+
T Consensus       757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence            7777777765432211000000000001      1111  35567777777788888888777 7788888888888887


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++. +.++|.++...|++++|+.+|++++..
T Consensus       836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       836 IPAILDTLGWLLVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            777 777788888888888888888887776

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1e-16  Score=147.74  Aligned_cols=179  Identities=16%  Similarity=0.132  Sum_probs=146.1

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch
Q 024858           17 WKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG   96 (261)
Q Consensus        17 ~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~   96 (261)
                      +..+..+|+.|++|..+|.++.-|++++.||+.+++++.++|+.++  .+-++|.=+.....+|+|...|++||.++|  
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~--  486 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAMKSFRKALGVDP--  486 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHHHHHHhhhcCCc--
Confidence            3456789999999999999999999999999999999999998543  455678778889999999999999998754  


Q ss_pred             hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858           97 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA  175 (261)
                                              .+-.+|+.||.+|.++++++.|+-+|++|++++|.+.. .+.+|.++.+.|+.|+|
T Consensus       487 ------------------------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A  542 (638)
T KOG1126|consen  487 ------------------------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA  542 (638)
T ss_pred             ------------------------hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence                                    23468999999999999999999999999999999998 88999999999999999


Q ss_pred             HHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cchhhhcccch
Q 024858          176 RSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-PDLSDLLGLNL  223 (261)
Q Consensus       176 ~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~  223 (261)
                      +..|++|+..++.++.          -...++.|...|+++....|+ +....-+|.++
T Consensus       543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~  601 (638)
T KOG1126|consen  543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY  601 (638)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            9999999998544431          145566677777777765554 44555566655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.1e-16  Score=147.48  Aligned_cols=154  Identities=21%  Similarity=0.163  Sum_probs=144.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ..++|.+.|+++|.+|+.+||++..++..+|.=+.....+|.|...|+.++..+|++  -.++.-||.+|.++++++.|.
T Consensus       432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh--YnAwYGlG~vy~Kqek~e~Ae  509 (638)
T KOG1126|consen  432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH--YNAWYGLGTVYLKQEKLEFAE  509 (638)
T ss_pred             hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--hHHHHhhhhheeccchhhHHH
Confidence            468999999999999999999999999999999999999999999999999999994  445666999999999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  162 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L  162 (261)
                      -.|++|++++|                          .+.-+...+|.++.+.|+.++|+.+|++|+.+||.++- .++.
T Consensus       510 ~~fqkA~~INP--------------------------~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  510 FHFQKAVEINP--------------------------SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             HHHHhhhcCCc--------------------------cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            99999999865                          45568899999999999999999999999999999998 9999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Q 024858          163 GLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       163 ~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.++...|++++|...++++...
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHh
Confidence            99999999999999999998887

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6.5e-16  Score=137.46  Aligned_cols=154  Identities=18%  Similarity=0.156  Sum_probs=141.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...++.++|+.+|++|+++||+...+|..||.=+..++....||+.|++++.++|.|  -..+.-||..|.-.+-+.=|+
T Consensus       341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRAWYGLGQaYeim~Mh~YaL  418 (559)
T KOG1155|consen  341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRAWYGLGQAYEIMKMHFYAL  418 (559)
T ss_pred             HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHHHhhhhHHHHHhcchHHHH
Confidence            456788999999999999999999999999999999999999999999999999985  334556999999999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  162 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L  162 (261)
                      -+|++|+++                          +|+++.+|..||.||.+.++.+||+++|++|+...-.+.. ...|
T Consensus       419 yYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L  472 (559)
T KOG1155|consen  419 YYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL  472 (559)
T ss_pred             HHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence            999999886                          4678999999999999999999999999999999888888 8899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Q 024858          163 GLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       163 ~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.+|.+.++..+|..+|++-+..
T Consensus       473 akLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  473 AKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999999999998884

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.70  E-value=3.3e-15  Score=135.00  Aligned_cols=207  Identities=16%  Similarity=0.130  Sum_probs=153.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~   78 (261)
                      ....|++++|+..+++++..++..    ..++..+|.++...|++++|+..+++++...|.+  ....+.++.+|.+.|+
T Consensus        79 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~  156 (389)
T PRK11788         79 FRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA--EGALQQLLEIYQQEKD  156 (389)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHhch
Confidence            467899999999999988854432    3568889999999999999999999999888873  3456678999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhh-----hcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           79 VEEQIEMLKRKLRLIYQGEA-----FNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~-----~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      +++|++.++++++..+....     +...........+      ..+.  +.+.|++..++..+|.+|..+|++++|+..
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  236 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA  236 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999887543210     0000000000011      1111  456788889999999999999999999999


Q ss_pred             HHHHHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCCC
Q 024858          146 YQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP  212 (261)
Q Consensus       146 ~~~al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~~  212 (261)
                      |++++..+|++..  +..++.+|...|++++|+..+++++...+ ++.          ..+.++.|...+.......|+
T Consensus       237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~  314 (389)
T PRK11788        237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQALLREQLRRHPS  314 (389)
T ss_pred             HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence            9999999998754  67899999999999999999999998732 221          134556677777654443443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=8.1e-16  Score=120.88  Aligned_cols=109  Identities=15%  Similarity=0.091  Sum_probs=99.3

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHH
Q 024858           47 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  126 (261)
Q Consensus        47 i~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~  126 (261)
                      ..+++++++++|++    +. .+|.++...|++++|+..|++++.+.                          |++..++
T Consensus        13 ~~~~~~al~~~p~~----~~-~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~   61 (144)
T PRK15359         13 EDILKQLLSVDPET----VY-ASGYASWQEGDYSRAVIDFSWLVMAQ--------------------------PWSWRAH   61 (144)
T ss_pred             HHHHHHHHHcCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHH
Confidence            46789999999983    22 36888899999999999999999874                          4678899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      .++|.++..+|++++|+..|++++.++|+++. ++++|.++..+|++++|+..|++++...
T Consensus        62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999 9999999999999999999999999983

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.70  E-value=2.2e-15  Score=132.17  Aligned_cols=150  Identities=13%  Similarity=0.014  Sum_probs=128.3

Q ss_pred             CCHHHHHHHHHHHHHc---CC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            7 KDPEAAIVLFWKAINA---GD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~---~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      +..+.++.-+.++|..   +| ..+..++.+|.++...|++++|+..|+++++++|+++  ..++.+|.+|...|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCHHHH
Confidence            4567789999999963   33 3478899999999999999999999999999999953  4667799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      ++.|++++++.                          |++..++.++|.++...|++++|+..|+++++++|+++. ...
T Consensus       118 ~~~~~~Al~l~--------------------------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  171 (296)
T PRK11189        118 YEAFDSVLELD--------------------------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW  171 (296)
T ss_pred             HHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999974                          467789999999999999999999999999999999985 222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                       ..+....+++++|+..+++.+..
T Consensus       172 -~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        172 -LYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             -HHHHHccCCHHHHHHHHHHHHhh
Confidence             23345678999999999877654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=3.9e-15  Score=123.13  Aligned_cols=158  Identities=13%  Similarity=-0.018  Sum_probs=137.3

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +....|++++|+.+|++++..+|.++.++.++|.++..+|++++|+..+++++...+..........++.+|...|++++
T Consensus        74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  153 (234)
T TIGR02521        74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK  153 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence            34568999999999999999999999999999999999999999999999999864321122345558999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |+..++++++..|                          +++.++..+|.++..+|++++|...+++++...|+++. +.
T Consensus       154 A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  207 (234)
T TIGR02521       154 AEKYLTRALQIDP--------------------------QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW  207 (234)
T ss_pred             HHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999998743                          45678899999999999999999999999999998887 77


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++.++...|+.++|..+.+.+...
T Consensus       208 ~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       208 LGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            8899999999999999988876653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.69  E-value=6.1e-15  Score=150.58  Aligned_cols=231  Identities=12%  Similarity=0.044  Sum_probs=169.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +..|++++|+.+|+++++.+|+++.++..+|.++.++|++++|+..++++++..|+++.  ....++.++.+.|++++|+
T Consensus       472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~--~~~a~al~l~~~~~~~~Al  549 (1157)
T PRK11447        472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE--QVYAYGLYLSGSDRDRAAL  549 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhCCCHHHHH
Confidence            35799999999999999999999999999999999999999999999999999998543  3445677788999999999


Q ss_pred             HHHHHHHHhhcchh--hhcC--------cchHHHhhchhh----hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           84 EMLKRKLRLIYQGE--AFNG--------KPTKTARSHGKK----FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        84 ~~~~~al~l~~~~~--~~~~--------~~~~~~~~~~~~----~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      ..++++........  .+..        .........+..    -.+...|+++.++.+||.+|.++|++++|+..|+++
T Consensus       550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a  629 (1157)
T PRK11447        550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRV  629 (1157)
T ss_pred             HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99987543211000  0000        000000011110    114567899999999999999999999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cc---
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-PD---  214 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~~-~~---  214 (261)
                      ++.+|+++. +.+++.+|...|++++|+.++++++...+..+.          ..+.++.|.+.+..+....++ +.   
T Consensus       630 l~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~  709 (1157)
T PRK11447        630 LTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME  709 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence            999999999 999999999999999999999999886322211          245566777777776544322 11   


Q ss_pred             ---hhhhcccch-----hHHHHHHHHHHHH
Q 024858          215 ---LSDLLGLNL-----EDEFVNGLEEMVR  236 (261)
Q Consensus       215 ---~~~~~~~~~-----~d~~~~~~~~~l~  236 (261)
                         .....+..+     .++.++.|+..+.
T Consensus       710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        710 SALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence               111112222     4677777777764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=5.6e-16  Score=134.63  Aligned_cols=180  Identities=20%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +..+++++|...++++.+..+ ++..+..+..++...|+++++...++++....+..........+|.++.+.|++++|+
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  166 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL  166 (280)
T ss_dssp             -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred             ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            467888889988888887554 4566777778888889999999998887764421112345566888899999999999


Q ss_pred             HHHHHHHHhhcchhh-hcC------cchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           84 EMLKRKLRLIYQGEA-FNG------KPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        84 ~~~~~al~l~~~~~~-~~~------~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      ..|++++++.|.+.. .+.      ...+... ....+.  ....|+++.++..+|.+|..+|++++|+.+|++++..+|
T Consensus       167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~-~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  167 RDYRKALELDPDDPDARNALAWLLIDMGDYDE-AREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            999999998775321 110      0000000 000111  122367778889999999999999999999999999999


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++. ..++|.++...|+.++|..++++++..
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             T-HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            9998 889999999999999999999988763

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=5.8e-15  Score=131.45  Aligned_cols=154  Identities=20%  Similarity=0.146  Sum_probs=135.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCCh---HHHHHH-------------------------------HHHHHHHcCCcHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRV---DSALKD-------------------------------MAVVMKQLDRSEEAIEA   49 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~---~~al~~-------------------------------Lg~~~~~~g~~~eAi~~   49 (261)
                      -...|+++|+..|+.+.+.+|=.   -+.+.+                               .|.-|.-.++++.|+.+
T Consensus       273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y  352 (559)
T KOG1155|consen  273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY  352 (559)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence            34689999999999999988842   111111                               56666778899999999


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHH
Q 024858           50 IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL  129 (261)
Q Consensus        50 ~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~L  129 (261)
                      ++++++++|+  ...++.+.|.=|.+++....||+.|++|++++|                          -+-++|+.|
T Consensus       353 FkRALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--------------------------~DyRAWYGL  404 (559)
T KOG1155|consen  353 FKRALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP--------------------------RDYRAWYGL  404 (559)
T ss_pred             HHHHHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--------------------------hhHHHHhhh
Confidence            9999999999  455677789999999999999999999999865                          345799999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          130 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       130 g~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.+|.-++.+.=|+-+|++|+.+.|++.. |..||.||.+.++.+||+..|++++..
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999 999999999999999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.66  E-value=5.2e-15  Score=122.35  Aligned_cols=149  Identities=15%  Similarity=0.114  Sum_probs=120.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+.-|+++....+.++..  +|..         -+...++.++++..++++++.+|+++  ..+..||.+|...|++++|
T Consensus        26 Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         26 YLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHH
Confidence            455677777666653321  2221         11236788999999999999999954  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCchh-
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTN--FMAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~--~~eA~~~~~~al~~~P~~~~-  158 (261)
                      +.+|++++++.                          |++++++.++|.++ .+.|+  +++|...++++++++|++.. 
T Consensus        93 ~~a~~~Al~l~--------------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a  146 (198)
T PRK10370         93 LLAYRQALQLR--------------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA  146 (198)
T ss_pred             HHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence            99999999974                          56788999999975 77787  59999999999999999999 


Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858          159 ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  190 (261)
Q Consensus       159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~  190 (261)
                      +.+||.++.++|++++|+..+++++...+++.
T Consensus       147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999854443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.66  E-value=1.3e-14  Score=139.45  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=127.6

Q ss_pred             HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858           21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN  100 (261)
Q Consensus        21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~  100 (261)
                      ..-|..++++.+||.+..++|+++||...++.++.+.|++  ..+...++.++.+.+++++|...+++++...       
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------  150 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------  150 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------
Confidence            4568889999999999999999999999999999999994  3455668999999999999999999999874       


Q ss_pred             CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHH
Q 024858          101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVL  179 (261)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~  179 (261)
                                         |+++.+++++|.++.+.|++++|+.+|++++..+|+++. +.++|.++.+.|+.++|...|
T Consensus       151 -------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        151 -------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             -------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                               578899999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHhC
Q 024858          180 EDVLYG  185 (261)
Q Consensus       180 ~~~l~~  185 (261)
                      ++++..
T Consensus       212 ~~a~~~  217 (694)
T PRK15179        212 QAGLDA  217 (694)
T ss_pred             HHHHHh
Confidence            999996

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.65  E-value=5.9e-15  Score=122.03  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=113.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHcCC--HHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGK--VEEQ   82 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y~~~g~--~~eA   82 (261)
                      .++.++++..++++++.+|+++++|..||.++...|++++|+.+|++++++.|+++  .+...+|.+ |...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence            46778899999999999999999999999999999999999999999999999954  455567875 578888  5999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      ++.+++++++.                          |+++.++.+||.++.++|++++|+.+|+++++++|.+.+
T Consensus       130 ~~~l~~al~~d--------------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        130 REMIDKALALD--------------------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHhC--------------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999974                          689999999999999999999999999999999998776

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.65  E-value=1.3e-14  Score=134.13  Aligned_cols=165  Identities=25%  Similarity=0.227  Sum_probs=136.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cch-hHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-SQESLDNV   68 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~--------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~~-~~~~~~~~   68 (261)
                      ...+|++++|+.+|..++..        .|.....+..+|.+|..++++.+|+.+|++++.+.     +++ +.....+.
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n  288 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN  288 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35689999999999999987        67778888889999999999999999999987642     332 23345677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      |+.+|.+.|+++||..++++++++...         ...         ...|+.+..+.+++.++..++++++|+.+|++
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~---------~~~---------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEK---------LLG---------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHH---------hhc---------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            999999999999999999999998531         001         11133456889999999999999999999999


Q ss_pred             HHhhC-----CCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~-----P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++-     ++++   . ..+||.+|..+|+++||.++|++++..
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI  396 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            99864     3442   3 579999999999999999999999996

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.65  E-value=1.4e-14  Score=142.16  Aligned_cols=182  Identities=11%  Similarity=0.041  Sum_probs=140.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHcCCH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--~~~~~~~L~~ly~~~g~~   79 (261)
                      .+..|++++|+..|+++++.+|.. ..+...+|.++..+|++++|+..|++++...|.++  .......|+.++.++|++
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            356689999999999999876442 23445579999999999999999999998887641  122334466678999999


Q ss_pred             HHHHHHHHHHHHhhcch-------------h---hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHH
Q 024858           80 EEQIEMLKRKLRLIYQG-------------E---AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQ  135 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~-------------~---~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~  135 (261)
                      ++|+..+++++...|+.             .   +.. .........+      ..+.  +...|+++.++.++|.++..
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~-~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS-LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999875521             0   000 0000000011      1121  56789999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          136 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       136 ~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++++|+..+++++.++|++.. .+.+|.++..+|++++|...+++++..
T Consensus       406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999 889999999999999999999999997

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.64  E-value=2.5e-14  Score=117.57  Aligned_cols=132  Identities=20%  Similarity=0.183  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      ..+...||.-|.++|++..|.+-++++++.+|++  ...+..++.+|.+.|+.+.|-+.|++++.+.             
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------------   99 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY--YLAHLVRAHYYQKLGENDLADESYRKALSLA-------------   99 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------------
Confidence            4566779999999999999999999999999994  4456679999999999999999999999985             


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA---NK-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                                   |++.++++|.|+.+..+|+|++|...|++|+. +|..   .. +.|+|.|-.++|+++.|...|+++
T Consensus       100 -------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra  165 (250)
T COG3063         100 -------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA  165 (250)
T ss_pred             -------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence                         45678999999999999999999999999997 4544   45 789999999999999999999999


Q ss_pred             HhCCC
Q 024858          183 LYGRI  187 (261)
Q Consensus       183 l~~~~  187 (261)
                      +...+
T Consensus       166 L~~dp  170 (250)
T COG3063         166 LELDP  170 (250)
T ss_pred             HHhCc
Confidence            99843

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.63  E-value=2e-14  Score=121.45  Aligned_cols=174  Identities=16%  Similarity=0.044  Sum_probs=135.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHc--
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKC--   76 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~---~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~--   76 (261)
                      .+..|++++|+..|++++...|+.+   .++..+|.++.++|++++|+..++++++..|+++.. .....+|.+|.+.  
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~  122 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID  122 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence            4567999999999999999988765   678999999999999999999999999999974321 2345578888776  


Q ss_pred             ------CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           77 ------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        77 ------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                            |++++|+..|+++++..|.............         .+.........++|.+|..+|++.+|+..|++++
T Consensus       123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~---------~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  193 (235)
T TIGR03302       123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD---------YLRNRLAGKELYVARFYLKRGAYVAAINRFETVV  193 (235)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                  8999999999999998653211000000000         0001122345689999999999999999999999


Q ss_pred             hhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          151 MIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ...|+++   . ++.+|.++..+|++++|..+++.+...
T Consensus       194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9988754   5 789999999999999999988887664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.59  E-value=8e-14  Score=136.92  Aligned_cols=153  Identities=13%  Similarity=0.112  Sum_probs=139.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+-.|+.++|+..|.+++..+|..+.++..+|.++...|++++|+.++++++.++|+++  .+...++.++...|++++|
T Consensus        25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~l~~~g~~~eA  102 (765)
T PRK10049         25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQRGLILTLADAGQYDEA  102 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHH
Confidence            45679999999999999988999999999999999999999999999999999999853  3455688999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +..++++++..                          |+++. +..+|.++..+|++++|+..|+++++++|++.. +..
T Consensus       103 ~~~l~~~l~~~--------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~  155 (765)
T PRK10049        103 LVKAKQLVSGA--------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE  155 (765)
T ss_pred             HHHHHHHHHhC--------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999874                          46677 999999999999999999999999999999999 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +|.++...|+.++|+..++++..
T Consensus       156 la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        156 YVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHHHCCChHHHHHHHHhCCC
Confidence            99999999999999999986554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.58  E-value=4.8e-14  Score=108.85  Aligned_cols=116  Identities=13%  Similarity=-0.005  Sum_probs=77.8

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858           15 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        15 ~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~   94 (261)
                      .|++++..+|++..+...+|..+.+.|++++|+..+++++..+|++  ..+...+|.+|...|++++|+..+++++++. 
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            5666777777777777777777777777777777777777776663  2344456667777777777777777766653 


Q ss_pred             chhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           95 QGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                               |+++..+.++|.+|...|++++|+..|+++++++|++..
T Consensus        82 -------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        82 -------------------------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             -------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                                     344556667777777777777777777777777776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00540 hemY_coli hemY protein

Probab=99.57  E-value=1.6e-13  Score=125.56  Aligned_cols=184  Identities=15%  Similarity=0.093  Sum_probs=143.1

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-------------------------
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL-------------------------   56 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~-------------------------   56 (261)
                      +++..|+++.|...++..++..|+++.++..++.++.++|++++|++.+++..+.                         
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~  241 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA  241 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3566899999999999999999999999999999999999999988876665543                         


Q ss_pred             -------------CCch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhh-----hc--Ccch-HHHhhchhh
Q 024858           57 -------------CSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-----FN--GKPT-KTARSHGKK  113 (261)
Q Consensus        57 -------------~P~~--~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~-----~~--~~~~-~~~~~~~~~  113 (261)
                                   .|+.  ....+...++.++...|++++|++.++++++..|+...     +.  .... .........
T Consensus       242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~  321 (409)
T TIGR00540       242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL  321 (409)
T ss_pred             hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence                         2210  01234455778899999999999999999998765541     11  0000 000000111


Q ss_pred             hh--hhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          114 FQ--VSVRQETS--RLLGNLAWAYMQKTNFMAAEVVYQ--KAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       114 ~~--~~l~p~~~--~~~~~Lg~~~~~~g~~~eA~~~~~--~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.  +...|+++  .++..+|+++.++|++++|.++|+  ++++.+|++.....||.++.++|+.++|.++|++++..
T Consensus       322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            21  57789999  899999999999999999999999  68889999988669999999999999999999998774

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.57  E-value=1.7e-13  Score=107.52  Aligned_cols=117  Identities=15%  Similarity=0.037  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|..+...|++++|+..|+-+..++                          |.+++.|.|||.|+..+|++.+|+.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--------------------------p~~~~y~~gLG~~~Q~~g~~~~AI~   90 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--------------------------AWSFDYWFRLGECCQAQKHWGEAIY   90 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHHhhHHHHHH
Confidence            34557888899999999999999988764                          4678899999999999999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  207 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~  207 (261)
                      .|.+|+.++|+++. .+++|.|+...|+.++|...|+.++......+.+..-.++|..+|..+.
T Consensus        91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363         91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence            99999999999999 9999999999999999999999999964223444455566777777664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.56  E-value=5e-14  Score=122.37  Aligned_cols=202  Identities=21%  Similarity=0.154  Sum_probs=91.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..++++.|+..|++.+..++..+..+..++.+ ...+++++|+.++++.....++  .. .....+.+|...|+++++..
T Consensus        56 ~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~--~~-~l~~~l~~~~~~~~~~~~~~  131 (280)
T PF13429_consen   56 SLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD--PR-YLLSALQLYYRLGDYDEAEE  131 (280)
T ss_dssp             ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccccccccccc--cc-hhhHHHHHHHHHhHHHHHHH
Confidence            46889999999999999999999999899888 7999999999999988876655  22 23346678899999999999


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLG  163 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~  163 (261)
                      .++++.....                        -|+++.++..+|.++.+.|++++|+..|+++++.+|+++. ...++
T Consensus       132 ~l~~~~~~~~------------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  132 LLEKLEELPA------------------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             HHHHHHH-T---------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHhccC------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9999876421                        0235678888999999999999999999999999999998 88899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCC-CCchhhhcccch--hHHHHHH
Q 024858          164 LCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL--EDEFVNG  230 (261)
Q Consensus       164 ~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~--~d~~~~~  230 (261)
                      .+++..|+++++..+++.+....+.++.          ..+..+.|.+.+.......| ++.....|+-.+  .+++.++
T Consensus       188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred             HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999988888877775322221          24566677777777655444 555555555554  3555555


Q ss_pred             HHHH
Q 024858          231 LEEM  234 (261)
Q Consensus       231 ~~~~  234 (261)
                      ++-.
T Consensus       268 ~~~~  271 (280)
T PF13429_consen  268 LRLR  271 (280)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.56  E-value=2.1e-13  Score=133.52  Aligned_cols=157  Identities=10%  Similarity=0.077  Sum_probs=124.9

Q ss_pred             CchhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858            1 MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         1 ~~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      |+...+|+++.|+..|+++++.+|+++.++..+..++...|+.++|+..+++++  .|.+........+|.+|..+|+++
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence            356789999999999999999999997666699999999999999999999999  554323333444588999999999


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhh
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC  160 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~  160 (261)
                      +|++.|+++++..|                          ++++++..|+.+|...++.++|+..+++++..+|++....
T Consensus       120 ~Aiely~kaL~~dP--------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l  173 (822)
T PRK14574        120 QALALWQSSLKKDP--------------------------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYM  173 (822)
T ss_pred             HHHHHHHHHHhhCC--------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHH
Confidence            99999999999754                          5566777777888888888888888888888888754444


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++.++..+++..+|+..|++++..
T Consensus       174 ~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        174 TLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHh
Confidence            4455555567776688888888876

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.55  E-value=3.7e-13  Score=122.78  Aligned_cols=182  Identities=16%  Similarity=0.154  Sum_probs=134.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch---h------------------
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---S------------------   61 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~---~------------------   61 (261)
                      ++..|++++|...+++.++.+|+++.++..++.++.+.|++++|++.+.+..+..+.+   .                  
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888888888888888888888888888888888888888886666555432210   0                  


Q ss_pred             -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh---cCcc-hHHHhhchhhhh--h
Q 024858           62 -------------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF---NGKP-TKTARSHGKKFQ--V  116 (261)
Q Consensus        62 -------------------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~---~~~~-~~~~~~~~~~~~--~  116 (261)
                                         ...+...++..+...|+.++|...++++++. +++...   .+.. .......-..+.  +
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~l  321 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQI  321 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence                               1112344577778888888888888888884 333211   0100 000000001111  4


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ...|+++..+..+|.++.++|++++|..+|+++++.+|++..+..|+.++.++|+.++|..+|++.+..
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            667999999999999999999999999999999999999988788999999999999999999999875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.2e-13  Score=123.90  Aligned_cols=194  Identities=19%  Similarity=0.109  Sum_probs=152.6

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +--|...+|..+|.|+..+||....+|...|..+...|..++|+.+|..+.++.|+-. ... ..+|.=|...+.++-|.
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~-LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPS-LYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chH-HHHHHHHHHhccHHHHH
Confidence            3448899999999999999999999999999999999999999999999999999832 222 33788889999999999


Q ss_pred             HHHHHHHHhhcchhhh-c--Ccc---hHHHhhchhhhh--h----hcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           84 EMLKRKLRLIYQGEAF-N--GKP---TKTARSHGKKFQ--V----SVRQ---ETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~-~--~~~---~~~~~~~~~~~~--~----~l~p---~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ..|.+|+.+.|.+... +  |..   .+....-...|+  +    .+.+   -...++.|||.+|..++++++|+..|++
T Consensus       401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~  480 (611)
T KOG1173|consen  401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK  480 (611)
T ss_pred             HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            9999999998765322 1  100   000000001111  1    1222   2455789999999999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  206 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l  206 (261)
                      +|.+.|.++. +..+|.+|..+|+++.|+..|.++|..   .|++.-    +.++|...
T Consensus       481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~----~~~lL~~a  532 (611)
T KOG1173|consen  481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIF----ISELLKLA  532 (611)
T ss_pred             HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHH----HHHHHHHH
Confidence            9999999999 999999999999999999999999998   444422    55666543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.55  E-value=1e-12  Score=110.99  Aligned_cols=140  Identities=18%  Similarity=0.102  Sum_probs=119.4

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      ++..++.+..+|..+...|++++|+..+++++..+|+++. ......+|.+|.+.|++++|+..|+++++..|.+     
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----  103 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-----  103 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-----
Confidence            3456888999999999999999999999999999997532 2345678999999999999999999999986521     


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCchh-h-------------
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------TNFMAAEVVYQKAQMIDPDANK-A-------------  159 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~--------g~~~eA~~~~~~al~~~P~~~~-~-------------  159 (261)
                                        |..+.+++.+|.++...        |++++|+..|++++..+|++.. +             
T Consensus       104 ------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~  165 (235)
T TIGR03302       104 ------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL  165 (235)
T ss_pred             ------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence                              12235788999999876        8999999999999999999863 2             


Q ss_pred             ----hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          160 ----CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       160 ----~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                          ..+|.++..+|++.+|+..|++++..
T Consensus       166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  195 (235)
T TIGR03302       166 AGKELYVARFYLKRGAYVAAINRFETVVEN  195 (235)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                26788999999999999999999997

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.54  E-value=3.2e-13  Score=104.25  Aligned_cols=110  Identities=20%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858           48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  127 (261)
Q Consensus        48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~  127 (261)
                      +.+++++..+|++.  .....++..+...|++++|+..+++++.+.                          |+++.++.
T Consensus         4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~~~~   55 (135)
T TIGR02552         4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------PYNSRYWL   55 (135)
T ss_pred             hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCcHHHHH
Confidence            46788999999853  445668999999999999999999988864                          45678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|.++..+|++++|+..|++++..+|+++. ++++|.++...|++++|+..+++++..
T Consensus        56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999 999999999999999999999999998

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=99.54  E-value=1.2e-12  Score=115.81  Aligned_cols=156  Identities=12%  Similarity=0.055  Sum_probs=131.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH--
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV--   79 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~--   79 (261)
                      +...+..++|+.++.++|..+|++..+|+..|.++..+| ++++++..+++++..+|++..  +++..+.++.+.|+.  
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--aW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--IWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--HhHHHHHHHHHcCchhh
Confidence            345678899999999999999999999999999999998 579999999999999998532  344456666777874  


Q ss_pred             HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858           80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-  158 (261)
                      ++++.+++++++++                          |++..+|.+.|+++...|++++|+..+.++++.+|+|.. 
T Consensus       125 ~~el~~~~kal~~d--------------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789        125 NKELEFTRKILSLD--------------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence            67888888888864                          456789999999999999999999999999999999999 


Q ss_pred             hhhHHHHHHHc---CCH----HHHHHHHHHHHhCC
Q 024858          159 ACNLGLCLIKR---TRY----NEARSVLEDVLYGR  186 (261)
Q Consensus       159 ~~~L~~~l~~~---g~~----~eA~~~~~~~l~~~  186 (261)
                      |.+.+.++.+.   |++    ++++.+..+++..+
T Consensus       179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~  213 (320)
T PLN02789        179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN  213 (320)
T ss_pred             HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence            99999998876   334    47888888988873

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.53  E-value=5.1e-13  Score=111.75  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      +...+-+....+|++.++ .+++..+...|+-+.+..+..++....|.+  ..+...+|......|++.+|+..++++..
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--RELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--HHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            444444455566666666 666666666666666666666666555653  22333356666666777777777776666


Q ss_pred             hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858           92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  170 (261)
Q Consensus        92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g  170 (261)
                      +.                          |++.++|+.+|.+|.+.|++++|...|.+++++.|.++. ..|||..|.-.|
T Consensus       129 l~--------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         129 LA--------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             cC--------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            53                          345566666666666666666666666666666666666 666666666666


Q ss_pred             CHHHHHHHHHHHHhC
Q 024858          171 RYNEARSVLEDVLYG  185 (261)
Q Consensus       171 ~~~eA~~~~~~~l~~  185 (261)
                      +++.|..++..+...
T Consensus       183 d~~~A~~lll~a~l~  197 (257)
T COG5010         183 DLEDAETLLLPAYLS  197 (257)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            666666666666654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=4.1e-13  Score=120.47  Aligned_cols=160  Identities=16%  Similarity=0.191  Sum_probs=123.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .++-+++++|+.-|++++.++|++.-++..++..+.++++++++...++.+++.+|+-  ....++.+.++..+++|++|
T Consensus       404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHH
Confidence            3556778888888888888888888888888888888888888888888888888873  34566677888888888888


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchh-h
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-QKTNFMAAEVVYQKAQMIDPDANK-A  159 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~-~  159 (261)
                      ++.|.+++++.|... .+.                     ++..+.+-|.+.. =.+++..|+.++++|+++||.+.. .
T Consensus       482 ~k~YD~ai~LE~~~~~~~v---------------------~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~  540 (606)
T KOG0547|consen  482 VKQYDKAIELEPREHLIIV---------------------NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY  540 (606)
T ss_pred             HHHHHHHHhhccccccccc---------------------cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence            888888888754210 000                     1222333333322 238999999999999999999998 8


Q ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          160 CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       160 ~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..||.+...+|+.++|+++|+++...
T Consensus       541 ~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  541 ETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            89999999999999999999998875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.3e-12  Score=112.78  Aligned_cols=205  Identities=19%  Similarity=0.165  Sum_probs=165.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+-.+++..|+.+-.++|..+|++.+++..-|.++++.||.++|+-+|+.+..+.|-  ....+.-|...|...|++.||
T Consensus       310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~--rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY--RLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh--hHHHHHHHHHHHHhhchHHHH
Confidence            345789999999999999999999999999999999999999999999999999997  344566688999999999999


Q ss_pred             HHHHHHHHHhhcchh-hh--cC----cchHHHhhchhhhh---hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           83 IEMLKRKLRLIYQGE-AF--NG----KPTKTARSHGKKFQ---VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~--~~----~~~~~~~~~~~~~~---~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      ...-+.+.+..+... .+  .|    ...-..+.-.++|.   +.++|....+...++..+...|+++++++.++++|..
T Consensus       388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII  467 (564)
T ss_pred             HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence            999999888765321 11  11    00111111223333   7899999999999999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCCCchh
Q 024858          153 DPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLS  216 (261)
Q Consensus       153 ~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~  216 (261)
                      .||+.-+..||.++..++.+.+|..+|..++..   +|.+.+    +.+=+..+++...++++-
T Consensus       468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~~----sl~Gl~~lEK~~~~~DAT  524 (564)
T KOG1174|consen  468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSKR----TLRGLRLLEKSDDESDAT  524 (564)
T ss_pred             ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CccchH----HHHHHHHHHhccCCCCcc
Confidence            999998999999999999999999999999998   454433    555566666555554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.50  E-value=3.6e-12  Score=106.70  Aligned_cols=151  Identities=16%  Similarity=0.191  Sum_probs=135.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..|+-+.+.....++....|.+.+.++.+|......|++.+|+..++++..+.|+++  ..++.+|-+|.+.|++++|-.
T Consensus        78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--~~~~~lgaaldq~Gr~~~Ar~  155 (257)
T COG5010          78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--EAWNLLGAALDQLGRFDEARR  155 (257)
T ss_pred             hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--hhhhHHHHHHHHccChhHHHH
Confidence            456777777777787788899999999999999999999999999999999999964  467889999999999999999


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLG  163 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~  163 (261)
                      .|.+++++.                          |+.+.+.+|||..|.-.|+++.|..++.++....+.+.. ..||+
T Consensus       156 ay~qAl~L~--------------------------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA  209 (257)
T COG5010         156 AYRQALELA--------------------------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA  209 (257)
T ss_pred             HHHHHHHhc--------------------------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            999999984                          456789999999999999999999999999999888888 89999


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 024858          164 LCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       164 ~~l~~~g~~~eA~~~~~~~l  183 (261)
                      .+...+|++++|.....+-+
T Consensus       210 l~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         210 LVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHhhcCChHHHHhhccccc
Confidence            99999999999987665433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=4.8e-13  Score=113.92  Aligned_cols=130  Identities=20%  Similarity=0.220  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      ++.+..-|.-+.+.++|.+|+..|.++|.++|.++  .++.+-+.+|.+.|.++.|++-++.+|.++|            
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------------  146 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDP------------  146 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------------
Confidence            45577788888999999999999999999999964  3556678899999999999999999999754            


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHH---HHHHHHHHH
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYN---EARSVLEDV  182 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~---eA~~~~~~~  182 (261)
                                    ....+|..||.+|..+|++++|+..|++||.++|+|.. +.+|..+-.+.+..+   .+...++-+
T Consensus       147 --------------~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~  212 (304)
T KOG0553|consen  147 --------------HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA  212 (304)
T ss_pred             --------------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence                          45678999999999999999999999999999999998 888888887777666   444444443


Q ss_pred             Hh
Q 024858          183 LY  184 (261)
Q Consensus       183 l~  184 (261)
                      ..
T Consensus       213 ~~  214 (304)
T KOG0553|consen  213 GL  214 (304)
T ss_pred             hh
Confidence            33

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.49  E-value=1.1e-12  Score=126.41  Aligned_cols=128  Identities=13%  Similarity=0.009  Sum_probs=117.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+++.+++..|++..++.+++.++.++++++||...+++++...|+++  ...+.+|.++.+.|++++|
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l~~~g~~~~A  173 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REILLEAKSWDEIGQSEQA  173 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcchHHH
Confidence            35679999999999999999999999999999999999999999999999999999954  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      +++|+++++..                          |+++.++.++|.+++..|+.++|...|++|++...+-..
T Consensus       174 ~~~y~~~~~~~--------------------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        174 DACFERLSRQH--------------------------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             HHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence            99999999842                          467889999999999999999999999999999877665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.48  E-value=1.9e-12  Score=115.73  Aligned_cols=153  Identities=14%  Similarity=0.083  Sum_probs=104.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~   79 (261)
                      ...|++++|...+++++..+|++..++.. +..+...    |+..++.+.+.......|..  .....+++.++..+|++
T Consensus        54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHHcCCH
Confidence            45567777777777777777776665553 3333333    33333444333322333332  12333466677777777


Q ss_pred             HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858           80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-  158 (261)
                      ++|+..+++++++.                          |+++.++..+|.+|.++|++++|+.++++++...|.++. 
T Consensus       131 ~~A~~~~~~al~~~--------------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~  184 (355)
T cd05804         131 DRAEEAARRALELN--------------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML  184 (355)
T ss_pred             HHHHHHHHHHHhhC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence            77777777777764                          456678889999999999999999999999998875432 


Q ss_pred             ----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          159 ----ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       159 ----~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                          +..+|.++..+|++++|+.+|++++..
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence                347899999999999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.5e-12  Score=115.55  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=120.3

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      .+++.|++-.|...|.++|+++|.+.+.+-.+|.+|.+.++.++-...+.++..++|.++.  ++.--|.++.-.+++++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHH
Confidence            3678899999999999999999999998999999999999999999999999999999654  34446788888899999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |+.-|++++.++|                          ++.-.+..++.+..++++++++...|+.+....|+.+. ..
T Consensus       413 A~aDF~Kai~L~p--------------------------e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~  466 (606)
T KOG0547|consen  413 AIADFQKAISLDP--------------------------ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN  466 (606)
T ss_pred             HHHHHHHHhhcCh--------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence            9999999999854                          34445555666666666666666666666666666666 44


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      -.|.++..+++|+.|.+.|.+++..
T Consensus       467 ~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  467 LFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            4466666666666666666666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.46  E-value=3.8e-12  Score=117.87  Aligned_cols=165  Identities=20%  Similarity=0.241  Sum_probs=128.4

Q ss_pred             chhhcCCHHHHHHHHHHHHH--------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-------CchhHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAIN--------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-------SKQSQESLD   66 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~--------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-------P~~~~~~~~   66 (261)
                      +.+..+++++|+.+|++|+.        .+|..+.++.+||.+|..+|+++||..++++++.+.       +... ....
T Consensus       250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v-~~~l  328 (508)
T KOG1840|consen  250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV-AAQL  328 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH-HHHH
Confidence            45678999999999999995        345667889999999999999999999998876542       1222 2234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..++.++..++++++|+.+|++++++....             .+     .-.|..+.+..|||.+|..+|+|+||..+|
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~-------------~g-----~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~  390 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDA-------------PG-----EDNVNLAKIYANLAELYLKMGKYKEAEELY  390 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhh-------------cc-----ccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            568899999999999999999999985300             00     001223568899999999999999999999


Q ss_pred             HHHHhhC--------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMID--------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~--------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|+.+.        +.... ..+||..+.+.+++.+|...|.++...
T Consensus       391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            9999875        22223 568899999999999999998877664

>PLN02789 farnesyltranstransferase

Probab=99.44  E-value=1e-11  Score=109.85  Aligned_cols=165  Identities=13%  Similarity=0.029  Sum_probs=136.4

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS--EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~--~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      ++++++.++.+++..+|++..+|+..+.++...|+.  ++++..+++++..+|++  ..+++..+.++...|++++|++.
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN--y~AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN--YHAWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhhhHHHHHHH
Confidence            689999999999999999999999999999999874  78899999999999985  33455577888999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCchh
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK---TNF----MAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~---g~~----~eA~~~~~~al~~~P~~~~  158 (261)
                      +.++|++++                          .+..+|++.|.++...   |.+    ++++.+..+++.++|+|.+
T Consensus       165 ~~~~I~~d~--------------------------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S  218 (320)
T PLN02789        165 CHQLLEEDV--------------------------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES  218 (320)
T ss_pred             HHHHHHHCC--------------------------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence            999999753                          5667999999998776   333    5788888999999999999


Q ss_pred             -hhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858          159 -ACNLGLCLIK----RTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  207 (261)
Q Consensus       159 -~~~L~~~l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~  207 (261)
                       |..++.++..    .++..+|+..+.+++..   .+...    .|.+.|..+-
T Consensus       219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~----~al~~l~d~~  265 (320)
T PLN02789        219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHV----FALSDLLDLL  265 (320)
T ss_pred             HHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcH----HHHHHHHHHH
Confidence             9999999988    45678899999998775   22222    2666666654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=5.4e-11  Score=106.37  Aligned_cols=180  Identities=19%  Similarity=0.253  Sum_probs=138.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...||+++|...|+.|+..+....++++++|..+..+|+.++|.+.+-+.-.+--+++  .+..-++++|.-..+...||
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--EVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhhCHHHHH
Confidence            3579999999999999999999999999999999999999999999877655443432  23445899999999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhh---hh-----hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKK---FQ-----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~---~~-----~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      +.|-++..+.|.+.+...+...+....+.+   |+     ..--|-+-++.--||..|....=+++|+.+|++|--+.|+
T Consensus       579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~  658 (840)
T KOG2003|consen  579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN  658 (840)
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence            999999998775544332222222222222   11     2333566667777888888888888888888888888888


Q ss_pred             chhh-hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANKA-CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~~-~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ...| ..++.|+.+.|.|..|...|+.+-..
T Consensus       659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            8884 56788888888888888888887764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=1.2e-11  Score=97.08  Aligned_cols=109  Identities=11%  Similarity=-0.030  Sum_probs=96.9

Q ss_pred             HcC-CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh
Q 024858           21 NAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF   99 (261)
Q Consensus        21 ~~~-p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~   99 (261)
                      ... ++.-+.++.+|..+.+.|++++|+..|+-+..++|.++  ..+..||.++..+|++.+||.+|.+++.+.      
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------   99 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIK------   99 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            456 77788899999999999999999999999999999853  455669999999999999999999998874      


Q ss_pred             cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858          100 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                                          |++|..+.|+|.||...|+.++|.+.|+.|+..--+++
T Consensus       100 --------------------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        100 --------------------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             --------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence                                57889999999999999999999999999999864443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=3.6e-12  Score=116.39  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             HHHHHHHHHcCC--ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           13 IVLFWKAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL   90 (261)
Q Consensus        13 ~~~~~~al~~~p--~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al   90 (261)
                      ..+|-.+....|  .+++....||++|.-.|.|+.|+++|+.++...|+  +..++|-||-.+..-.+.+|||..|++||
T Consensus       414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn--d~~lWNRLGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN--DYLLWNRLGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc--hHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence            344445555555  56666666777777777777777777777777776  33455556666666677777777777776


Q ss_pred             HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           91 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      .+.                          |++.++++|||..|+.+|.|+||.++|-.||.+.+.
T Consensus       492 qLq--------------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  492 QLQ--------------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hcC--------------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            663                          344556677777777777777777777777766654

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=1.4e-10  Score=106.31  Aligned_cols=221  Identities=12%  Similarity=0.044  Sum_probs=135.3

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ..+.+||++.|.+...++.+..|+..-++...|.+..++|++++|..+++++.+..|++. ..+....+.++...|++++
T Consensus        93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHHCCCHHH
Confidence            456789999999999999998888777777889999999999999999999998888731 2244446888899999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhc---CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSV---RQETS-RLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l---~p~~~-~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |.+.++++++..|................+      ..+.  ...   .|... .+....+.-+..++..+++...+.++
T Consensus       172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999998876532211000000000000      0000  000   11111 11112222223444444455566666


Q ss_pred             HhhCC----Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc------------chhhHHHHHHHHHHH-HhcCC
Q 024858          150 QMIDP----DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE------------DGRTRKRAEELLLEL-ESKQP  211 (261)
Q Consensus       150 l~~~P----~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~------------~~~~~~~a~~~l~~l-~~~~~  211 (261)
                      ....|    +++. +..++..+...|++++|...+++++...+.+..            .+.+...+...++.. ...+.
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~  331 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD  331 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence            66666    3555 677888888888888888888888886332221            122233344444433 33333


Q ss_pred             CC--chhhhcccch
Q 024858          212 PP--DLSDLLGLNL  223 (261)
Q Consensus       212 ~~--~~~~~~~~~~  223 (261)
                      ++  ...+.+|..+
T Consensus       332 ~~~~~ll~sLg~l~  345 (409)
T TIGR00540       332 KPKCCINRALGQLL  345 (409)
T ss_pred             ChhHHHHHHHHHHH
Confidence            45  5666777766

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=6.4e-12  Score=114.56  Aligned_cols=137  Identities=20%  Similarity=0.216  Sum_probs=118.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCch-hHHHHHHHHHHHHHHcCC
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----CSKQ-SQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~----~P~~-~~~~~~~~L~~ly~~~g~   78 (261)
                      .+-+++.-|..+|.+|+.+.|.+|-.++.+|++....+.+.+|+..++.++..    .+.. .|....++||.+|+++++
T Consensus       391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            34678889999999999999999999999999999999999999999988733    2221 256667889999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      +++||..|+++|.+.                          |.+++++..+|.+|.-+|+++.|+.+|.++|.++|++..
T Consensus       471 ~~eAI~~~q~aL~l~--------------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLS--------------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHHHHHHHHHHcC--------------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            999999999999985                          457889999999999999999999999999999999976


Q ss_pred             -hhhHHHHH
Q 024858          159 -ACNLGLCL  166 (261)
Q Consensus       159 -~~~L~~~l  166 (261)
                       ..-|+.+.
T Consensus       525 ~~~lL~~ai  533 (611)
T KOG1173|consen  525 ISELLKLAI  533 (611)
T ss_pred             HHHHHHHHH
Confidence             54555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.38  E-value=1.9e-10  Score=105.01  Aligned_cols=89  Identities=9%  Similarity=0.060  Sum_probs=49.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHH-HHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDM-AVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~L-g~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      .+.+||+++|++...++-+..+. +.....+ +....++|++++|..+++++.+..|+.. .......+.++...|++++
T Consensus        94 a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         94 KLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRIQLARNENHA  171 (398)
T ss_pred             HHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHCCCHHH
Confidence            34566777666665554443322 3333333 3333666777777777777666666631 1122234566666777777


Q ss_pred             HHHHHHHHHHhh
Q 024858           82 QIEMLKRKLRLI   93 (261)
Q Consensus        82 A~~~~~~al~l~   93 (261)
                      |++.++++++..
T Consensus       172 Al~~l~~~~~~~  183 (398)
T PRK10747        172 ARHGVDKLLEVA  183 (398)
T ss_pred             HHHHHHHHHhcC
Confidence            777776666654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.38  E-value=1.2e-10  Score=104.10  Aligned_cols=186  Identities=13%  Similarity=0.065  Sum_probs=134.3

Q ss_pred             cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-hh
Q 024858           22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AF   99 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-~~   99 (261)
                      .||+.+.++..+|.++...|+.++|...+.++....|.+. ......+.+.++...|++++|++.++++++..|.+. +.
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence            3788899999999999999999999888888887777531 123344567788889999999999999998866442 11


Q ss_pred             c--------CcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858          100 N--------GKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  168 (261)
Q Consensus       100 ~--------~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~  168 (261)
                      .        +............+.  ....|+...++.++|.++..+|++++|+..++++++++|++.. +..+|.++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          81 KLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            1        100000000000010  1234555667788999999999999999999999999999998 8899999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCc--------------chhhHHHHHHHHHHHH
Q 024858          169 RTRYNEARSVLEDVLYGRIPGCE--------------DGRTRKRAEELLLELE  207 (261)
Q Consensus       169 ~g~~~eA~~~~~~~l~~~~~~~~--------------~~~~~~~a~~~l~~l~  207 (261)
                      .|++++|+.++++++...+..+.              ..+.++.|.+.+....
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999986332211              1345556666666653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=104.79  Aligned_cols=109  Identities=22%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.+++|.+|+..|.+||+++|+++-.+.+-+.+|.++|.++.||+-++.++.++|..  ...+.-||.+|..+|++++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHHHHH
Confidence            457899999999999999999999999999999999999999999999999999994  334555999999999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  140 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~  140 (261)
                      +.|+++|++.                          |+++....||.++-..++...
T Consensus       170 ~aykKaLeld--------------------------P~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  170 EAYKKALELD--------------------------PDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHhhhccC--------------------------CCcHHHHHHHHHHHHHhcCCC
Confidence            9999999974                          466777788888877776665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.33  E-value=3.7e-11  Score=108.04  Aligned_cols=112  Identities=16%  Similarity=0.107  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  109 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~  109 (261)
                      +...|..+...|++++|+..|++++.++|+++  .++..+|.+|...|++++|+..+++++.+.                
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----------------   66 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELD----------------   66 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence            45568888899999999999999999999853  456668999999999999999999999874                


Q ss_pred             chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858          110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  169 (261)
Q Consensus       110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~  169 (261)
                                |+++.+++++|.+|..+|++++|+..|++++.++|++.. ...++.|....
T Consensus        67 ----------P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         67 ----------PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             ----------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                      456788999999999999999999999999999999998 66777775444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=1.3e-10  Score=104.63  Aligned_cols=135  Identities=18%  Similarity=0.062  Sum_probs=122.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      +|.-..+++..+....+.|++++|...+...++..|+++  .+.-..++++.+.|+.++|++.+++++.+.|        
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P--------  371 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDP--------  371 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------
Confidence            378888999999999999999999999999999999964  3556689999999999999999999999854        


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                                        +.+-++.|+|.+|.+.|++.+|+..+.+.+..+|+++. |..|+.+|..+|+..+|...+.+
T Consensus       372 ------------------~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         372 ------------------NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             ------------------CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence                              44568899999999999999999999999999999999 99999999999999999998888


Q ss_pred             HHhC
Q 024858          182 VLYG  185 (261)
Q Consensus       182 ~l~~  185 (261)
                      ....
T Consensus       434 ~~~~  437 (484)
T COG4783         434 GYAL  437 (484)
T ss_pred             HHHh
Confidence            7775

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.33  E-value=7.2e-11  Score=94.90  Aligned_cols=128  Identities=10%  Similarity=0.016  Sum_probs=96.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~--~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +++.+..+...+...++..+..  ..++..+|.++..+|++++|+..+++++.+.|+.. .......+|.+|...|++++
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e   90 (168)
T CHL00033         11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK   90 (168)
T ss_pred             cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence            4566777777776665655554  67789999999999999999999999999877621 12355669999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHH
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-------QKTNFM-------AAEVVYQ  147 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~-------~~g~~~-------eA~~~~~  147 (261)
                      |+..|++++.+.|                          +....+.++|.+|.       .+|+++       +|+.+|+
T Consensus        91 A~~~~~~Al~~~~--------------------------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         91 ALEYYFQALERNP--------------------------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHHHHHHhCc--------------------------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999999998743                          23345556666665       777766       6666667


Q ss_pred             HHHhhCCCchh
Q 024858          148 KAQMIDPDANK  158 (261)
Q Consensus       148 ~al~~~P~~~~  158 (261)
                      +++..+|++..
T Consensus       145 ~a~~~~p~~~~  155 (168)
T CHL00033        145 QAIALAPGNYI  155 (168)
T ss_pred             HHHHhCcccHH
Confidence            77778887653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.32  E-value=1.3e-11  Score=118.37  Aligned_cols=154  Identities=23%  Similarity=0.303  Sum_probs=131.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .+..++|+++|.++|..+|.+..|-+.+|.|+...|++.+|+..|.++...-.+..  ..+.++|++|..+|+|-.||+.
T Consensus       625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--dv~lNlah~~~e~~qy~~AIqm  702 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--DVWLNLAHCYVEQGQYRLAIQM  702 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--ceeeeHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999998876543321  2344589999999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  164 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~  164 (261)
                      |+.+++...                        +.++..++..||.+|.+.|.+.+|..+..+|+...|.++. .+|+|.
T Consensus       703 Ye~~lkkf~------------------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~  758 (1018)
T KOG2002|consen  703 YENCLKKFY------------------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL  758 (1018)
T ss_pred             HHHHHHHhc------------------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence            999998742                        1245779999999999999999999999999999999999 899998


Q ss_pred             HHHHc-------------------CCHHHHHHHHHHHHhC
Q 024858          165 CLIKR-------------------TRYNEARSVLEDVLYG  185 (261)
Q Consensus       165 ~l~~~-------------------g~~~eA~~~~~~~l~~  185 (261)
                      ++.+.                   +..++|.++|+.+...
T Consensus       759 v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~  798 (1018)
T KOG2002|consen  759 VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN  798 (1018)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88665                   5667777777776664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=5e-10  Score=101.82  Aligned_cols=179  Identities=20%  Similarity=0.155  Sum_probs=138.8

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch---hHH--HHHHHHHHHHHHcCC
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQE--SLDNVLIDLYKKCGK   78 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~---~~~--~~~~~L~~ly~~~g~   78 (261)
                      ..+++++.|++.|.+++.++ .+...+++.+.++...|.+.+.+.....++..+-..   .+.  -....+|..|.+.|+
T Consensus       235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~  313 (539)
T KOG0548|consen  235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED  313 (539)
T ss_pred             HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence            35678999999999999999 888889999999999999999999998888766531   111  011225678999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhh--hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK--FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      ++.|+..|.++|.-.-..+..+.  .+......+.  -...+.|+.+.--..-|..++..|+|.+|+..|.+|+..+|++
T Consensus       314 ~~~ai~~~~kaLte~Rt~~~ls~--lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D  391 (539)
T KOG0548|consen  314 YEGAIKYYQKALTEHRTPDLLSK--LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED  391 (539)
T ss_pred             HHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence            99999999998875311111110  0000000000  0135667777777788999999999999999999999999999


Q ss_pred             hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +. +.|.|.||.++|.+..|+.-.+.++..
T Consensus       392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            99 899999999999999999999999998

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.30  E-value=3.3e-10  Score=102.17  Aligned_cols=146  Identities=23%  Similarity=0.128  Sum_probs=127.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..++..++..|+++..+...+.++...|+.++|++.+++++.++|+.  ..+..++|..|.+.|++.+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHH
Confidence            4567899999999999999999999999999999999999999999999999999995  34667799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhH
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL  162 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L  162 (261)
                      |..+++.+.-+                          |+++..|..||.+|..+|+..+|...+                
T Consensus       394 i~~L~~~~~~~--------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~----------------  431 (484)
T COG4783         394 IRILNRYLFND--------------------------PEDPNGWDLLAQAYAELGNRAEALLAR----------------  431 (484)
T ss_pred             HHHHHHHhhcC--------------------------CCCchHHHHHHHHHHHhCchHHHHHHH----------------
Confidence            99999987753                          578999999999999999999987755                


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCcc
Q 024858          163 GLCLIKRTRYNEARSVLEDVLYGRIPGCED  192 (261)
Q Consensus       163 ~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~  192 (261)
                      +..|.-.|++++|+..+.++......+..+
T Consensus       432 AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~  461 (484)
T COG4783         432 AEGYALAGRLEQAIIFLMRASQQVKLGFPD  461 (484)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence            445666899999999999998874334433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.29  E-value=4.1e-10  Score=97.78  Aligned_cols=185  Identities=12%  Similarity=0.063  Sum_probs=152.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +..|++..|+.-|..|+..+|++-.+++.-|.+|..+|+..-|+.-+.+++.+-|+..-  ...--|.++.++|+++.|+
T Consensus        49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~--ARiQRg~vllK~Gele~A~  126 (504)
T KOG0624|consen   49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA--ARIQRGVVLLKQGELEQAE  126 (504)
T ss_pred             HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH--HHHHhchhhhhcccHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999432  3333577889999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHH---------------Hh---hchhhh-----hhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKT---------------AR---SHGKKF-----QVSVRQETSRLLGNLAWAYMQKTNFM  140 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~---------------~~---~~~~~~-----~~~l~p~~~~~~~~Lg~~~~~~g~~~  140 (261)
                      .-|+++|.-.|+.....-...++               .-   .+...+     .+++.|=++..+...+.||...|++.
T Consensus       127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k  206 (504)
T KOG0624|consen  127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPK  206 (504)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHH
Confidence            99999999866332111000000               00   001111     15778888888999999999999999


Q ss_pred             HHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcch
Q 024858          141 AAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG  193 (261)
Q Consensus       141 eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~  193 (261)
                      .|+.-++.+-++..|++. ++.++..+...|+.+.++...++.|..   +|+|.
T Consensus       207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK  257 (504)
T KOG0624|consen  207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHK  257 (504)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---Ccchh
Confidence            999999999999999999 999999999999999999999999998   66663

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.1e-09  Score=94.45  Aligned_cols=181  Identities=13%  Similarity=0.125  Sum_probs=110.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHcCCHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK---QSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~---~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      |+..++++|+..|...++.+|..-+++..||.++.+.|..+.||.+-...+.. |+   +-...+..-||.=|...|-+|
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            56788999999999999999999999999999999999999999764443322 32   001111222444444445555


Q ss_pred             HHHHHHHH----------------------------------HHHhhcchhhhcC------c-chHHHhhc-hh---hhh
Q 024858           81 EQIEMLKR----------------------------------KLRLIYQGEAFNG------K-PTKTARSH-GK---KFQ  115 (261)
Q Consensus        81 eA~~~~~~----------------------------------al~l~~~~~~~~~------~-~~~~~~~~-~~---~~~  115 (261)
                      .|+.+|..                                  .+++.++...+.-      . ......+. .+   .+.
T Consensus       125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            55444444                                  4444221110000      0 00000000 00   000


Q ss_pred             --hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          116 --VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       116 --~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                        +..+|+..++-..+|.++..+|+|..|++.++.+++.||+...  ...|..||..+|+.++.+..+.++...
T Consensus       205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence              3555666666666777777777777777777777777777765  446677777777777777777776665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.27  E-value=2.5e-10  Score=91.75  Aligned_cols=118  Identities=12%  Similarity=0.007  Sum_probs=89.8

Q ss_pred             cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCc
Q 024858           43 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET  122 (261)
Q Consensus        43 ~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~  122 (261)
                      +..+...+...++..+.+........+|.++...|++++|+..|++++.+.+..                       ++.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------------~~~   71 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------------YDR   71 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------------hhh
Confidence            444444554444555543344556678999999999999999999999874310                       013


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHH-------HcCCHHHHHHHHHHHH
Q 024858          123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLI-------KRTRYNEARSVLEDVL  183 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~-------~~g~~~eA~~~~~~~l  183 (261)
                      +.++.++|.+|..+|++++|+..|++++.++|++.. +.++|.++.       .+|++++|...+.+++
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            458999999999999999999999999999999998 889999998       7788775555555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=4e-10  Score=97.26  Aligned_cols=178  Identities=15%  Similarity=0.144  Sum_probs=142.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .++-|-+.+|++-++.+++..|. ++.+..|+.+|...++...|...|...+...|.+  .....-.+.++...|++++|
T Consensus       233 ylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~--VT~l~g~ARi~eam~~~~~a  309 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD--VTYLLGQARIHEAMEQQEDA  309 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch--hhhhhhhHHHHHHHHhHHHH
Confidence            35668889999999999987665 6688999999999999999999999999999984  44555578999999999999


Q ss_pred             HHHHHHHHHhhcch-hhh---------cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           83 IEMLKRKLRLIYQG-EAF---------NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        83 ~~~~~~al~l~~~~-~~~---------~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      .++|+.++++.+.+ ++.         .+++.-..+...+.  +.+--.+++.+.|+|.|++--++++-++..|++|+..
T Consensus       310 ~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi--LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst  387 (478)
T KOG1129|consen  310 LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI--LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST  387 (478)
T ss_pred             HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH--HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence            99999999986532 111         12221111111111  2233457889999999999999999999999999986


Q ss_pred             C--CCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 D--PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~--P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .  |+.. + |+|||.+....|++.-|.+.|+-+|..
T Consensus       388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS  424 (478)
T ss_pred             ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence            4  5544 5 999999999999999999999999987

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.26  E-value=2.4e-11  Score=82.83  Aligned_cols=64  Identities=30%  Similarity=0.384  Sum_probs=61.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC-CHHHHHHHHHHHHhC
Q 024858          122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT-RYNEARSVLEDVLYG  185 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g-~~~eA~~~~~~~l~~  185 (261)
                      ++.+|.++|.++..+|++++|+..|+++++++|+++. ++++|.++..+| ++++|+..+++++..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            5679999999999999999999999999999999999 999999999999 799999999999986

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.26  E-value=4.4e-10  Score=90.75  Aligned_cols=99  Identities=17%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      .....+|..|...|++++|+..|++++++.+..                       ++...++.++|.++...|++++|+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~~~~~~~~~la~~~~~~g~~~~A~   92 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------------NDRSYILYNMGIIYASNGEHDKAL   92 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------------chHHHHHHHHHHHHHHcCCHHHHH
Confidence            345567777778888888888888877753210                       012356778888888888888888


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCC--------------HHHHHHHHHHHHhC
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTR--------------YNEARSVLEDVLYG  185 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~--------------~~eA~~~~~~~l~~  185 (261)
                      ..|++++..+|++.. +.++|.++...|+              +++|++++++++..
T Consensus        93 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~  149 (172)
T PRK02603         93 EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL  149 (172)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888777 7777888877776              45566666666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=2.2e-11  Score=104.99  Aligned_cols=180  Identities=16%  Similarity=0.119  Sum_probs=136.4

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      -+-+++..|+..|...+...|.+...+..++.++..++++++|.++|+.+++++|.+  .......+.-|.=-|+.+-|.
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~Al  344 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMAL  344 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHH
Confidence            345678888999999998889988888889999999999999999999999998874  223333555666778899999


Q ss_pred             HHHHHHHHhh-cchhhhcCcc---------hHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           84 EMLKRKLRLI-YQGEAFNGKP---------TKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        84 ~~~~~al~l~-~~~~~~~~~~---------~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      .+|++.|.+- ..++.|++..         .-...+..+.....-.|+ -+++|+|||.+...-|++.-|..+|+-+|.-
T Consensus       345 ryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  345 RYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS  424 (478)
T ss_pred             HHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence            9999988873 2223333100         000000000010111122 4789999999999999999999999999999


Q ss_pred             CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ||++.. ..|||..-.+.|+.++|..++..+-..
T Consensus       425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            999999 999999999999999999999988776

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.25  E-value=2.4e-10  Score=85.55  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      +++..+|..+..+|++++|+..+++++..+|++. .......+|.++.+.|++++|+..|++++...|.+          
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS----------   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC----------
Confidence            4566777777777777777777777777777531 12244557777777777777777777777654310          


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                   |..+.++.++|.++..+|++++|+..|++++...|++..
T Consensus        73 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        73 -------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             -------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence                         112456777777777777777777777777777777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.25  E-value=2.7e-10  Score=92.02  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      |....++..+|..+...|++++|+..+++++...|+... ......+|.+|...|++++|+..|++++.+.|        
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------  103 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------  103 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------
Confidence            356677899999999999999999999999988776321 24566799999999999999999999998743        


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCch
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--------------FMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~  157 (261)
                                        ++...+.++|.+|..+|+              +++|++++++++..+|++.
T Consensus       104 ------------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        104 ------------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             ------------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence                              456788899999999887              6888899999999999874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.25  E-value=1.5e-10  Score=104.17  Aligned_cols=91  Identities=20%  Similarity=0.161  Sum_probs=85.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      .|..+...|++++|+..|++++++.                          |+++.++.++|.+|..+|++++|+..+++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--------------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~   61 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD--------------------------PNNAELYADRAQANIKLGNFTEAVADANK   61 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4666788999999999999999974                          46778999999999999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus        62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999998

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.25  E-value=1.7e-10  Score=112.64  Aligned_cols=160  Identities=14%  Similarity=0.041  Sum_probs=129.2

Q ss_pred             HHHHHHH-HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           14 VLFWKAI-NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        14 ~~~~~al-~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      .|-|..+ +.+|.+..++..|...+...|++++|++.++..+...|+.  ..+...+|.+|.+.+++.++.-.  +++.+
T Consensus        17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            3444444 4789999999999999999999999999999999999994  44666788899999999999888  77776


Q ss_pred             hcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC
Q 024858           93 IYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR  171 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~  171 (261)
                      .+....... ....+..      +---+++..+++.||.||.++|++++|...|+++|+++|+|+. ..++|..|... +
T Consensus        93 ~~~~~~~~~-ve~~~~~------i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         93 FSQNLKWAI-VEHICDK------ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             cccccchhH-HHHHHHH------HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence            442211110 0000000      1112456679999999999999999999999999999999999 99999999999 9


Q ss_pred             HHHHHHHHHHHHhC
Q 024858          172 YNEARSVLEDVLYG  185 (261)
Q Consensus       172 ~~eA~~~~~~~l~~  185 (261)
                      +++|+.++.+++..
T Consensus       165 L~KA~~m~~KAV~~  178 (906)
T PRK14720        165 KEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999996

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=3.3e-09  Score=91.42  Aligned_cols=151  Identities=18%  Similarity=0.092  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            7 KDPEAAIVLFWKAINAGDR-----VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~-----~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ++|++|+..-++..+.+|.     .+..+..|+..+....+.+.|+..+++++..+|+  ...+..++|+++...|+|..
T Consensus       155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~--cvRAsi~lG~v~~~~g~y~~  232 (389)
T COG2956         155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK--CVRASIILGRVELAKGDYQK  232 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--ceehhhhhhHHHHhccchHH
Confidence            4445555554444444433     1233334555555555555555555555555555  23344455555555555555


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~  160 (261)
                      |++.++.+++.+|                          + .+.++..|-.||.++|+.++.+..++++.+..+......
T Consensus       233 AV~~~e~v~eQn~--------------------------~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l  286 (389)
T COG2956         233 AVEALERVLEQNP--------------------------EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL  286 (389)
T ss_pred             HHHHHHHHHHhCh--------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence            5555555555432                          2 256888999999999999999999999999988877666


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++..-..+.-.++|..+..+-+..
T Consensus       287 ~l~~lie~~~G~~~Aq~~l~~Ql~r  311 (389)
T COG2956         287 MLADLIELQEGIDAAQAYLTRQLRR  311 (389)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHhh
Confidence            6777777777778888777776665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.23  E-value=1.3e-09  Score=107.03  Aligned_cols=150  Identities=11%  Similarity=-0.005  Sum_probs=124.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|+.++|+.++++++...|.....+..+|.++..+|++++|+++|+++++.+|+++.  +...|+.+|...|+.++|
T Consensus        78 ~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~--~l~gLa~~y~~~~q~~eA  155 (822)
T PRK14574         78 AGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD--LISGMIMTQADAGRGGVV  155 (822)
T ss_pred             HHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHhhcCCHHHH
Confidence            345699999999999999544555666666688999999999999999999999999643  444678999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      ++.+++++...|                          ++.. ...++.++..+++..+|+..|+++++.+|++.. ...
T Consensus       156 l~~l~~l~~~dp--------------------------~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~  208 (822)
T PRK14574        156 LKQATELAERDP--------------------------TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKN  208 (822)
T ss_pred             HHHHHHhcccCc--------------------------chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999988754                          1112 244566666788888899999999999999999 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 024858          162 LGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~  181 (261)
                      +..++...|-...|.+..++
T Consensus       209 ~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        209 HLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             HHHHHHHcCCcHHHHHHHHh
Confidence            99999999999999887775

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.19  E-value=2.4e-09  Score=102.35  Aligned_cols=154  Identities=18%  Similarity=0.170  Sum_probs=133.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...|++++|+..+..+|+.+|.++.++..||.+|.++|+.+++....-.+..++|.+.  ..+..++++..++|.++.|+
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHH
Confidence            4569999999999999999999999999999999999999999999999999999864  45566899999999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----h
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-----K  158 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-----~  158 (261)
                      -+|.+|+...|                          .+-......+.+|.++|+...|...|.+++.+.|...     .
T Consensus       228 ~cy~rAI~~~p--------------------------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d  281 (895)
T KOG2076|consen  228 YCYSRAIQANP--------------------------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED  281 (895)
T ss_pred             HHHHHHHhcCC--------------------------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence            99999999864                          3345678889999999999999999999999999322     1


Q ss_pred             -hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          159 -ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       159 -~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                       ....+..+...++-+.|+..++.++..
T Consensus       282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  282 LIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence             234577888889889999999998883

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=2.1e-09  Score=89.80  Aligned_cols=177  Identities=17%  Similarity=0.193  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            8 DPEAAIVLFWKAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         8 ~~~~A~~~~~~al~------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +.++-.+.....+.      .+|+.-..+-.+.++....|+.+-|...++......|+.  ..+..+-|.++...|++++
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S--~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS--KRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhchhh
Confidence            44444444444442      556656566666777777888888888888877777873  2344556777788888888


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh--------hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--------VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~--------~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      |+++|+..|+-+|.+.+..-+........|+...        +..=++++++|..|+.+|...|+|+.|.-+|++.+-+.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            8888888887655333221000000111121110        23446889999999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcC---CHHHHHHHHHHHHhCC
Q 024858          154 PDANK-ACNLGLCLIKRT---RYNEARSVLEDVLYGR  186 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g---~~~eA~~~~~~~l~~~  186 (261)
                      |-++- +..||.++.-+|   +++-|..+|.+++..+
T Consensus       185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            99998 889999998887   6777899999999983

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.18  E-value=1.8e-09  Score=105.69  Aligned_cols=140  Identities=13%  Similarity=0.095  Sum_probs=115.1

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-----------------HHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-----------------QESLD   66 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-----------------~~~~~   66 (261)
                      ..++++++|+..++.++...|+....+..+|.++.+.+++.++.-.  .++...+.+.                 +..+.
T Consensus        42 ~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         42 KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence            4689999999999999999999999999999999999999988766  5555444321                 11356


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..||.+|.+.|++++|...|+++|+++                          |+++.+++|+|..|... +.++|+.++
T Consensus       120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------------------~~n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720        120 RTLAEAYAKLNENKKLKGVWERLVKAD--------------------------RDNPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            679999999999999999999999974                          46788999999999999 999999999


Q ss_pred             HHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+|+..             ++..+++.++..+..+.+..
T Consensus       173 ~KAV~~-------------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        173 KKAIYR-------------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHH-------------HHhhhcchHHHHHHHHHHhc
Confidence            999987             44445555666655555554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.7e-09  Score=104.14  Aligned_cols=181  Identities=18%  Similarity=0.159  Sum_probs=129.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---cCCH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK---CGKV   79 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~---~g~~   79 (261)
                      +..||+-.|+.+|++++..+|.. ++....+|.++.++|+.+.|+.++.+++.++|...  .....||.+-..   ...+
T Consensus       175 ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v--~alv~L~~~~l~~~d~~s~  252 (1018)
T KOG2002|consen  175 YNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV--SALVALGEVDLNFNDSDSY  252 (1018)
T ss_pred             hccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH--HHHHHHHHHHHHccchHHH
Confidence            45788999999999999888764 34455678888899999999999999999999742  333334443333   3447


Q ss_pred             HHHHHHHHHHHHhhcchh-hhc---------CcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           80 EEQIEMLKRKLRLIYQGE-AFN---------GKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~-~~~---------~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ..+...+.++...++.+. +.+         +.......--...+. -..++--++..+.+|.+|..+|+|++|..+|.+
T Consensus       253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~  332 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME  332 (1018)
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            778888888888754322 111         000000000000011 012223456789999999999999999999999


Q ss_pred             HHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          149 AQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       149 al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      +++.+|++. - ++.||..|+..|++++|+..|++++...
T Consensus       333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~  372 (1018)
T KOG2002|consen  333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL  372 (1018)
T ss_pred             HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence            999999994 3 8899999999999999999999999973

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.17  E-value=2.5e-09  Score=83.90  Aligned_cols=121  Identities=18%  Similarity=0.103  Sum_probs=94.1

Q ss_pred             HcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           39 QLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        39 ~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      ..++...+...++.++..+|+... ......++.++...|++++|+..|++++...+...                +   
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~----------------l---   83 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE----------------L---   83 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH----------------H---
Confidence            678888888899999999997422 23456689999999999999999999988532100                0   


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                          .+.+...||.++..+|++++|+..++.+ .-.+-.+. +..+|.+|..+|++++|+..|++++
T Consensus        84 ----~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   84 ----KPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                1346788999999999999999999762 22222333 5678999999999999999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=5.8e-10  Score=77.99  Aligned_cols=61  Identities=26%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      +..+|.++..+|++++|+..++++++..|.+.  .+...++.+|...|++++|+..+++++.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34455555555555555555555555555421  22333455555555555555555555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=5.8e-10  Score=98.69  Aligned_cols=160  Identities=16%  Similarity=0.098  Sum_probs=137.8

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH----------HHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE----------SLDNVLIDLY   73 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~----------~~~~~L~~ly   73 (261)
                      ...|++++|...--.++++++.+.+++..-|.++.-.+..+.|+..+.+++.++|+.-..          .....-|+-.
T Consensus       180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            467899999999999999999999999999999999999999999999999999972100          0112234555


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      .+.|++.+|.+.|..+|.++|...                      ..++..+.|.+.+..+.|+..||+.-...|+++|
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~----------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNK----------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKID  317 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCcccc----------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence            789999999999999999976311                      0135578999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.... +..-|.|+..++++++|.+.|+++.+.
T Consensus       318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99998 778899999999999999999999997

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.16  E-value=1.7e-10  Score=81.92  Aligned_cols=83  Identities=31%  Similarity=0.406  Sum_probs=70.7

Q ss_pred             HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .+|++++|+..++++++..|.+                       | +..++.++|.+|.++|++++|+..+++ +..+|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~-----------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~   55 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTN-----------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP   55 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGT-----------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCC-----------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence            3689999999999999985410                       0 345788899999999999999999999 99999


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      .+.. ++.+|.|+.++|++++|+.+++++
T Consensus        56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   56 SNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            9987 788899999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.16  E-value=1.7e-09  Score=84.87  Aligned_cols=120  Identities=17%  Similarity=0.093  Sum_probs=97.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~   79 (261)
                      +..++...+...+...+...|+.   ..+...+|.++...|++++|+..|+.++...|+.. .......|+.++...|++
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            35788999999999999988887   45577799999999999999999999999877631 122345589999999999


Q ss_pred             HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      ++|+..++....-                           +-.+.++..+|.+|..+|++++|...|++||
T Consensus       102 d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999662110                           0124567789999999999999999999985

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.15  E-value=2.6e-10  Score=76.77  Aligned_cols=63  Identities=21%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      +|..+.+.|++++|+..|+++++..                          |++++++..+|.++.++|++++|+..|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD--------------------------PDNPEAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS--------------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5666677777777777777777653                          34566777777777777777777777777


Q ss_pred             HHhhCCCch
Q 024858          149 AQMIDPDAN  157 (261)
Q Consensus       149 al~~~P~~~  157 (261)
                      +++++|+++
T Consensus        57 a~~~~P~~p   65 (65)
T PF13432_consen   57 ALELDPDNP   65 (65)
T ss_dssp             HHHHSTT-H
T ss_pred             HHHHCcCCC
Confidence            777777764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.2e-09  Score=97.74  Aligned_cols=144  Identities=19%  Similarity=0.210  Sum_probs=120.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .++++.|+.+|.+++.-.-.        ..++.+....+++....+...-.+|.-+.  -...-|+-+.+.|+|.+|+..
T Consensus       311 ~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~--e~r~kGne~Fk~gdy~~Av~~  380 (539)
T KOG0548|consen  311 REDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAE--EEREKGNEAFKKGDYPEAVKH  380 (539)
T ss_pred             HHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHH--HHHHHHHHHHhccCHHHHHHH
Confidence            37788888888887752211        45666677778888888777778887322  233357888999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  164 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~  164 (261)
                      |.++++.+                          |+++.++.|.|.||...|.+.+|++-.+++++++|++.. +..-|.
T Consensus       381 YteAIkr~--------------------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~  434 (539)
T KOG0548|consen  381 YTEAIKRD--------------------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA  434 (539)
T ss_pred             HHHHHhcC--------------------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            99998874                          578889999999999999999999999999999999999 888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhC
Q 024858          165 CLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       165 ~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++..+.+|++|++.|++++..
T Consensus       435 al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  435 ALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999997

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.14  E-value=6.7e-10  Score=104.18  Aligned_cols=140  Identities=12%  Similarity=-0.082  Sum_probs=82.6

Q ss_pred             HcCCChHHHHHH--HHHHHHHcCC---cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 024858           21 NAGDRVDSALKD--MAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC--------GKVEEQIEMLK   87 (261)
Q Consensus        21 ~~~p~~~~al~~--Lg~~~~~~g~---~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~--------g~~~eA~~~~~   87 (261)
                      ...|.+++++..  -|.-+...+.   +..|+.+++++++++|+++..  +..++.+|...        ++...+.+..+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a--~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYA--QAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            344555544332  3444444433   667777777777777774322  22223333221        23455566666


Q ss_pred             HHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858           88 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  166 (261)
Q Consensus        88 ~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l  166 (261)
                      +++.+..                        .|..+.++.-+|.++...|++++|...|++|+.++|+ .. +..+|.++
T Consensus       409 ~a~al~~------------------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~  463 (517)
T PRK10153        409 NIVALPE------------------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY  463 (517)
T ss_pred             Hhhhccc------------------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence            6555410                        1234456666777777777777777777777777774 44 66777777


Q ss_pred             HHcCCHHHHHHHHHHHHhCCC
Q 024858          167 IKRTRYNEARSVLEDVLYGRI  187 (261)
Q Consensus       167 ~~~g~~~eA~~~~~~~l~~~~  187 (261)
                      ...|++++|+..|++++..++
T Consensus       464 ~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        464 ELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHcCCHHHHHHHHHHHHhcCC
Confidence            777777777777777777643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.11  E-value=5.9e-09  Score=99.73  Aligned_cols=133  Identities=17%  Similarity=0.080  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      ...+...|..+..+|++++|+.++..+++.+|.+  ...+..||.+|.++|+.+++....-.|-.+              
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~--~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------------  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN--PIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------------  202 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------------
Confidence            3456667888899999999999999999999984  345677999999999999999877766554              


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                                  +|++.+.|..++....++|+++.|.-+|.+|++.+|++.. ...-+..|.++|++..|..-|.+++..
T Consensus       203 ------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~  270 (895)
T KOG2076|consen  203 ------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL  270 (895)
T ss_pred             ------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence                        4567789999999999999999999999999999999998 889999999999999999999999998


Q ss_pred             CC
Q 024858          186 RI  187 (261)
Q Consensus       186 ~~  187 (261)
                      .+
T Consensus       271 ~p  272 (895)
T KOG2076|consen  271 DP  272 (895)
T ss_pred             CC
Confidence            44

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.11  E-value=1.4e-09  Score=75.96  Aligned_cols=93  Identities=34%  Similarity=0.394  Sum_probs=84.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..+|.++...|++++|+..++++++..|                          +++.++..+|.++...|++++|+..|
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~   57 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDP--------------------------DNADAYYNLAAAYYKLGKYEEALEDY   57 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCC--------------------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478888999999999999999988743                          34568899999999999999999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++...|.+.. +..+|.++..+|++++|...+.+++..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          58 EKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            999999999998 899999999999999999999999875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=6.4e-09  Score=89.19  Aligned_cols=120  Identities=18%  Similarity=0.186  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCc
Q 024858           43 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET  122 (261)
Q Consensus        43 ~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~  122 (261)
                      .++-+.-++..+..+|+++..  +.+||.+|..+|+++.|...|++++++.                          |++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------------------------g~n  189 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLA--------------------------GDN  189 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCC
Confidence            445566778889999997533  3459999999999999999999999974                          567


Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858          123 SRLLGNLAWAYMQK---TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  190 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~---g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~  190 (261)
                      ++++..+|.++..+   ....++...+++++..||++.. ..-||..+.++|+|.+|+..++..+...+++.
T Consensus       190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            88999999998665   4567899999999999999999 88999999999999999999999999844333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=3e-09  Score=79.47  Aligned_cols=97  Identities=16%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ...+|..+.+.|++++|+..|++++...|..                       |..+.+++.+|.++...|++++|+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~   61 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKS-----------------------TYAPNAHYWLGEAYYAQGKYADAAKA   61 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------cccHHHHHHHHHHHHhhccHHHHHHH
Confidence            3457888899999999999999998864310                       11256889999999999999999999


Q ss_pred             HHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          146 YQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       146 ~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |++++..+|++.   . +..+|.++..+|++++|+.++++++..
T Consensus        62 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        62 FLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999999863   4 789999999999999999999999997

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.09  E-value=5.7e-09  Score=79.11  Aligned_cols=110  Identities=24%  Similarity=0.152  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ...++.++...|+.++|+..|++++..-.++                       +.-.+++..+|.+|..+|++++|+..
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-----------------------~~~~~a~i~lastlr~LG~~deA~~~   60 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG-----------------------ADRRRALIQLASTLRNLGRYDEALAL   60 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3447888899999999999999999863211                       01245889999999999999999999


Q ss_pred             HHHHHhhCCC---chh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHH
Q 024858          146 YQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL  204 (261)
Q Consensus       146 ~~~al~~~P~---~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~  204 (261)
                      +++++...|+   +.. ...++.++...|+++||+..+-.++..      +...++++.....
T Consensus        61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~------~~~~y~ra~~~ya  117 (120)
T PF12688_consen   61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAE------TLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            9999999898   556 678899999999999999999998885      2235666655543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=4.5e-09  Score=94.26  Aligned_cols=201  Identities=15%  Similarity=0.038  Sum_probs=135.3

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      +++..|-.+-..|+..+--++.++.+-|.+-...|++++|.+.|+.++.-+..  -.....+.|-.+..+|+.++|+++|
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f  547 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCF  547 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHH
Confidence            35556666666666666667777777777778888888888888888866554  3333444677788888888888888


Q ss_pred             HHHHHhhcch-hhhcCcchHHHhhchhhh-------h-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           87 KRKLRLIYQG-EAFNGKPTKTARSHGKKF-------Q-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        87 ~~al~l~~~~-~~~~~~~~~~~~~~~~~~-------~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      -+.-.+--.. ..+. .............       + ..+-|++|.++.-||.+|.+.|+...|..++-......|-|.
T Consensus       548 ~klh~il~nn~evl~-qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni  626 (840)
T KOG2003|consen  548 LKLHAILLNNAEVLV-QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI  626 (840)
T ss_pred             HHHHHHHHhhHHHHH-HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence            8765542111 1110 0011111111111       1 366688888888999999999999999988888888888888


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----------cchhhHHHHHHHHHHHHhcCC
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC-----------EDGRTRKRAEELLLELESKQP  211 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~-----------~~~~~~~~a~~~l~~l~~~~~  211 (261)
                      . ...||..|+...=.++|+.+++++--.. |..           ....++++|.+.++.+-...|
T Consensus       627 e~iewl~ayyidtqf~ekai~y~ekaaliq-p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp  691 (840)
T KOG2003|consen  627 ETIEWLAAYYIDTQFSEKAINYFEKAALIQ-PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP  691 (840)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence            7 6778888888888889999998876651 221           124566777777777644333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.08  E-value=3.1e-09  Score=102.49  Aligned_cols=178  Identities=18%  Similarity=0.206  Sum_probs=144.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .++...|...|-++++++|..+.++..||.+|+...+...|.+.|.++..++|.++  ......++.|.+...+++|...
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999854  3455689999999999999998


Q ss_pred             HHHHHHhhcchh----hhc-Cc-chHHHhhchh--hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           86 LKRKLRLIYQGE----AFN-GK-PTKTARSHGK--KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        86 ~~~al~l~~~~~----~~~-~~-~~~~~~~~~~--~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      .-.+-+..+...    +.- |. ..+....|+.  .|+  +.++|++-..|..||.+|...|++.-|++.|.+|..++|+
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            666655544321    111 10 0010111121  133  6888999999999999999999999999999999999999


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.. .+..+......|+|.+|...+..++..
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            998 888899999999999999999988874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.07  E-value=6.6e-10  Score=78.89  Aligned_cols=81  Identities=27%  Similarity=0.282  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~--~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      .|+++.|+.+|++++..+|.  +...+..+|.++.++|++++|+..+++ ...+|.+  .....++|.+|.++|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999999998884  567788899999999999999999999 7777763  334556799999999999999


Q ss_pred             HHHHHH
Q 024858           84 EMLKRK   89 (261)
Q Consensus        84 ~~~~~a   89 (261)
                      ++|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=5.2e-10  Score=75.32  Aligned_cols=59  Identities=31%  Similarity=0.323  Sum_probs=55.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+|..+.++|++++|+..|+++++.+|++.. +..+|.++..+|++++|+.+|++++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999 999999999999999999999999997

>PRK15331 chaperone protein SicA; Provisional

Probab=99.07  E-value=8.6e-09  Score=81.48  Aligned_cols=112  Identities=19%  Similarity=0.124  Sum_probs=96.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      .|.=+..+|++++|..+|+-+...+                          |.+++.+..||.|+..+++|++|+..|-.
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--------------------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~   96 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYD--------------------------FYNPDYTMGLAAVCQLKKQFQKACDLYAV   96 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555578999999999999876653                          34678899999999999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ  210 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~  210 (261)
                      +..++++++. .+..|.|++.+|+.++|...|+.++..    +.+..-.++|..+|..+....
T Consensus        97 A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~~~  155 (165)
T PRK15331         97 AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER----TEDESLRAKALVYLEALKTAE  155 (165)
T ss_pred             HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHccc
Confidence            9999999998 999999999999999999999999994    445555678888998887544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=7.3e-09  Score=88.87  Aligned_cols=125  Identities=17%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HHcC--CHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY-KKCG--KVEEQI   83 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly-~~~g--~~~eA~   83 (261)
                      -..+.-+.-.+..+..+|++++-|..||.+|..+|++..|..+|++++++.|+++..  ...++.++ ...|  ...++.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHH
Confidence            346777888889999999999999999999999999999999999999999996543  32345443 3333  356788


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhh
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA  159 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~  159 (261)
                      .+++++++++                          |++..+++.||..++++|+|.+|+..++..+...|.+..+
T Consensus       214 ~ll~~al~~D--------------------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         214 ALLRQALALD--------------------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHhcC--------------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            9999998874                          4677899999999999999999999999999999987763

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.06  E-value=5.2e-08  Score=98.31  Aligned_cols=203  Identities=11%  Similarity=0.078  Sum_probs=136.9

Q ss_pred             hhcCCHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858            4 LVQKDPEAAIVLFWKAIN----AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~----~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~   79 (261)
                      ...|++++|..+|.....    ..|+ ..++..|-..|.+.|++++|.+.++.+.+.+... ....++.++..|.+.|++
T Consensus       553 ~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~  630 (1060)
T PLN03218        553 GQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDW  630 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCH
Confidence            456889999999988765    3455 3467778888899999999999999888765321 233567788889999999


Q ss_pred             HHHHHHHHHHHHhh--cchhhhc---------CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           80 EEQIEMLKRKLRLI--YQGEAFN---------GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        80 ~eA~~~~~~al~l~--~~~~~~~---------~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ++|+.+|++..+..  |....++         +.......-+......-+.| +..+++.|..+|.+.|++++|+..|++
T Consensus       631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~e  709 (1060)
T PLN03218        631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYED  709 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999887652  2211222         11110000000000011122 356788899999999999999999998


Q ss_pred             HHh--hCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC----------cchhhHHHHHHHHHHHHhc
Q 024858          149 AQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGR-IPGC----------EDGRTRKRAEELLLELESK  209 (261)
Q Consensus       149 al~--~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~~-~~~~----------~~~~~~~~a~~~l~~l~~~  209 (261)
                      ...  +.|+...|..|...|.+.|++++|.+++++..... .|+.          ...+.++.|..++..+...
T Consensus       710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            865  45665558889999999999999999999887642 1221          1245566677777776543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.06  E-value=5.4e-09  Score=90.00  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+++.||.+|..+|++++|+..|++++...|+++   + ++.+|.++..+|++++|...|++++..
T Consensus       181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555543   2 344555555555555555555555554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.04  E-value=3.8e-08  Score=83.93  Aligned_cols=172  Identities=12%  Similarity=0.004  Sum_probs=126.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHcC-
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCG-   77 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~a---l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~g-   77 (261)
                      .+..|++++|+..|++++...|..+.+   ...+|.++.+++++++|+..++++++.+|+++.. .+...+|..+...+ 
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~  121 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD  121 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence            356799999999999999988876555   4789999999999999999999999999985322 23445665543333 


Q ss_pred             -----------------CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858           78 -----------------KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  140 (261)
Q Consensus        78 -----------------~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~  140 (261)
                                       ...+|+..+++.++..|... +..    .+.   ..+ ..++-..+.--..+|..|.+.|+|.
T Consensus       122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-ya~----~A~---~rl-~~l~~~la~~e~~ia~~Y~~~~~y~  192 (243)
T PRK10866        122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-YTT----DAT---KRL-VFLKDRLAKYELSVAEYYTKRGAYV  192 (243)
T ss_pred             hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-hHH----HHH---HHH-HHHHHHHHHHHHHHHHHHHHcCchH
Confidence                             14678899999999865322 110    000   000 0000011233457899999999999


Q ss_pred             HHHHHHHHHHhhCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          141 AAEVVYQKAQMIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       141 eA~~~~~~al~~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                      .|+.-++.+++-.|+.+.    ..-++.+|..+|..++|..+...+.
T Consensus       193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            999999999999998873    5678999999999999988776543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.04  E-value=3.2e-08  Score=86.27  Aligned_cols=184  Identities=24%  Similarity=0.258  Sum_probs=127.2

Q ss_pred             hcCCHHHHHHHHHHHHHc----CC--ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINA----GD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-----KQSQESLDNVLIDLY   73 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~----~p--~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-----~~~~~~~~~~L~~ly   73 (261)
                      ..|++++|...|.++...    +.  ....++...+.++.+. ++++|+..|++++.+.-     ..+ ......+|.+|
T Consensus        47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a-A~~~~~lA~~y  124 (282)
T PF14938_consen   47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA-AKCLKELAEIY  124 (282)
T ss_dssp             HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH-HHHHHHHHHHH
T ss_pred             HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHH
Confidence            457777788888777642    11  1244566677777665 99999999999877532     222 23456689999


Q ss_pred             HHc-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           74 KKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        74 ~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      ... |++++|++.|++|+++....              +...      .-...+.++|.++.+.|+|++|+..|+++...
T Consensus       125 e~~~~d~e~Ai~~Y~~A~~~y~~e--------------~~~~------~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  125 EEQLGDYEKAIEYYQKAAELYEQE--------------GSPH------SAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             CCTT--HHHHHHHHHHHHHHHHHT--------------T-HH------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHC--------------CChh------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            998 99999999999999984211              1000      01357789999999999999999999999875


Q ss_pred             CCCc------h-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCC
Q 024858          153 DPDA------N-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQP  211 (261)
Q Consensus       153 ~P~~------~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~  211 (261)
                      .-++      . . ++..+.|++..|+.-.|...+++..... |...+.....-+..++.++...++
T Consensus       185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-~~F~~s~E~~~~~~l~~A~~~~D~  250 (282)
T PF14938_consen  185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-PSFASSREYKFLEDLLEAYEEGDV  250 (282)
T ss_dssp             CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-TTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred             hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHhCCH
Confidence            4322      1 2 3567889999999999999999998862 233445566678888888875443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.02  E-value=1.8e-09  Score=73.50  Aligned_cols=67  Identities=27%  Similarity=0.182  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-~~~eA~~~~~~al~l~~   94 (261)
                      ++.++..+|.++...|++++|+..|++++.++|++  ..+...+|.+|..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            56789999999999999999999999999999995  346677999999999 79999999999999854

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.01  E-value=4.2e-08  Score=81.40  Aligned_cols=138  Identities=20%  Similarity=0.182  Sum_probs=107.1

Q ss_pred             ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      ..++.+...|..+.+.|++.+|+..+++++...|.. ........+|.+|.+.|++++|+..+++.++..|..       
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------   75 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------   75 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--------
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence            356788899999999999999999999999999963 223455678999999999999999999999986621       


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCchh-h------------
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-----------TNFMAAEVVYQKAQMIDPDANK-A------------  159 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~-----------g~~~eA~~~~~~al~~~P~~~~-~------------  159 (261)
                                      |..+.+++.+|.++..+           +...+|+..|+..+...|++.. .            
T Consensus        76 ----------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~  139 (203)
T PF13525_consen   76 ----------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR  139 (203)
T ss_dssp             ----------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH
T ss_pred             ----------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH
Confidence                            22356778888886554           4456999999999999999752 1            


Q ss_pred             -----hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          160 -----CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       160 -----~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                           +.+|..|.+.|.+..|+..++.++..
T Consensus       140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  140 LAEHELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                 34799999999999999999999996

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.01  E-value=4.6e-08  Score=85.29  Aligned_cols=135  Identities=21%  Similarity=0.215  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      +...|..+...|++++|..+|.++....-    ...........+.+|.+. ++++|+.+|++++.+.-           
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~-----------  105 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR-----------  105 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH-----------
Confidence            44458899999999999999998754321    111122334466776665 99999999999999731           


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--Cch----h-hhhHHHHHHHcCCHHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDP--DAN----K-ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~-g~~~eA~~~~~~al~~~P--~~~----~-~~~L~~~l~~~g~~~eA~~  177 (261)
                         ..+..-      .-+.++.++|.+|... |++++|+.+|++|+.+.-  +..    . ..++|.++...|+|++|+.
T Consensus       106 ---~~G~~~------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~  176 (282)
T PF14938_consen  106 ---EAGRFS------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE  176 (282)
T ss_dssp             ---HCT-HH------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ---hcCcHH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence               111110      0245889999999999 999999999999998732  221    2 4589999999999999999


Q ss_pred             HHHHHHhC
Q 024858          178 VLEDVLYG  185 (261)
Q Consensus       178 ~~~~~l~~  185 (261)
                      .|+++...
T Consensus       177 ~~e~~~~~  184 (282)
T PF14938_consen  177 IYEEVAKK  184 (282)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999885

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.00  E-value=4.1e-09  Score=92.12  Aligned_cols=149  Identities=18%  Similarity=0.156  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-------h
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-------A   98 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-------~   98 (261)
                      ++-.....|.++...|++++|++.+.+.     +  ......+...+|.+.+|++.|...++++-+.+++.-       |
T Consensus       101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~--~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw  173 (290)
T PF04733_consen  101 NEIVQLLAATILFHEGDYEEALKLLHKG-----G--SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW  173 (290)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T--CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C--cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3434444566666677777777766443     1  122334456677777777777777777655533210       1


Q ss_pred             hc---Cc--chHHHhhchhhhh-h-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858           99 FN---GK--PTKTARSHGKKFQ-V-SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  170 (261)
Q Consensus        99 ~~---~~--~~~~~~~~~~~~~-~-~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g  170 (261)
                      .+   |.  .....    -.|. + .--|..+.+++.++.+++++|+|+||+..+.+++..+|++++ ..|++.+...+|
T Consensus       174 v~l~~g~e~~~~A~----y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g  249 (290)
T PF04733_consen  174 VNLATGGEKYQDAF----YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG  249 (290)
T ss_dssp             HHHHHTTTCCCHHH----HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCchhHHHHH----HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence            11   10  00000    0011 1 111456778889999999999999999999999999999998 889999999999


Q ss_pred             CH-HHHHHHHHHHHhC
Q 024858          171 RY-NEARSVLEDVLYG  185 (261)
Q Consensus       171 ~~-~eA~~~~~~~l~~  185 (261)
                      +. +.+.++..++...
T Consensus       250 k~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  250 KPTEAAERYLSQLKQS  265 (290)
T ss_dssp             -TCHHHHHHHHHCHHH
T ss_pred             CChhHHHHHHHHHHHh
Confidence            88 4555666665554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.00  E-value=1.9e-07  Score=87.53  Aligned_cols=183  Identities=17%  Similarity=0.052  Sum_probs=134.5

Q ss_pred             CchhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc----
Q 024858            1 MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC----   76 (261)
Q Consensus         1 ~~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~----   76 (261)
                      |+....|++++|+..+......-.+....+...|.++.++|+++||...|+..+..+|++  ...+..|..+..-.    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn--~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN--YDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHhhhcccc
Confidence            355678999999999998888888888889999999999999999999999999999994  33444455444122    


Q ss_pred             -CCHHHHHHHHHHHHHhhcchhhh--------c------------------Ccc------hHHHhhchh------hhh--
Q 024858           77 -GKVEEQIEMLKRKLRLIYQGEAF--------N------------------GKP------TKTARSHGK------KFQ--  115 (261)
Q Consensus        77 -g~~~eA~~~~~~al~l~~~~~~~--------~------------------~~~------~~~~~~~~~------~~~--  115 (261)
                       ...+.-.++|++.-...|...+.        .                  |.+      ..+.....+      .+.  
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~  169 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY  169 (517)
T ss_pred             cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence             35677788888876655422111        0                  000      000000000      000  


Q ss_pred             ---h----h--------cCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHH
Q 024858          116 ---V----S--------VRQET--SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus       116 ---~----~--------l~p~~--~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~  177 (261)
                         +    .        .+|..  .++++.|+..|...|++++|+.+..+|++..|+.++ ++..|.+|-..|++.+|..
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~  249 (517)
T PF12569_consen  170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE  249 (517)
T ss_pred             HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence               0    0        11111  246678999999999999999999999999999999 8889999999999999999


Q ss_pred             HHHHHHhC
Q 024858          178 VLEDVLYG  185 (261)
Q Consensus       178 ~~~~~l~~  185 (261)
                      +++.+...
T Consensus       250 ~~~~Ar~L  257 (517)
T PF12569_consen  250 AMDEAREL  257 (517)
T ss_pred             HHHHHHhC
Confidence            99999997

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.00  E-value=1.5e-08  Score=88.13  Aligned_cols=178  Identities=18%  Similarity=0.160  Sum_probs=120.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .||...|+.+....|+..|=+++....-+.+|...|....||.-++.+-++..+  ++....-.+.++...|+.++++..
T Consensus       168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D--nTe~~ykis~L~Y~vgd~~~sL~~  245 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD--NTEGHYKISQLLYTVGDAENSLKE  245 (504)
T ss_pred             CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhhhhHHHHHHH
Confidence            566777777777777777776666666677777777777777777776666555  233444456666777777777777


Q ss_pred             HHHHHHhhcchh-hhc--CcchHH---Hhhchh------------hh--hhhcCCCcHHHH----HHHHHHHHHcCCHHH
Q 024858           86 LKRKLRLIYQGE-AFN--GKPTKT---ARSHGK------------KF--QVSVRQETSRLL----GNLAWAYMQKTNFMA  141 (261)
Q Consensus        86 ~~~al~l~~~~~-~~~--~~~~~~---~~~~~~------------~~--~~~l~p~~~~~~----~~Lg~~~~~~g~~~e  141 (261)
                      .+..|+++|... .|.  -+..+.   ..+-..            ..  .+.-+|+.+.+.    .-+-.|+..-|++.|
T Consensus       246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e  325 (504)
T KOG0624|consen  246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE  325 (504)
T ss_pred             HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence            777777765321 111  000000   000000            00  023334433333    346788999999999


Q ss_pred             HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          142 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       142 A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |+....++|.++|++.. ++.-+.+|+-...|++|+.-|+++...
T Consensus       326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            99999999999999999 999999999999999999999999997

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.00  E-value=1.6e-08  Score=91.57  Aligned_cols=118  Identities=22%  Similarity=0.265  Sum_probs=104.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  112 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~  112 (261)
                      |-..+...+++++|+..+++..+.+|+     ....++.+|...++-.+|++.+.++++..                   
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-------------------  230 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKEN-------------------  230 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------------------
Confidence            555667779999999999999999988     23458899999999999999999999764                   


Q ss_pred             hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858          113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       113 ~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                             |.+..++..-+..+..+++++.|+...++++.+.|++.. |..|+.+|..+|++++|+..+.-
T Consensus       231 -------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  231 -------PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence                   345678888999999999999999999999999999998 99999999999999999977663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.99  E-value=5.5e-08  Score=90.67  Aligned_cols=152  Identities=19%  Similarity=0.131  Sum_probs=87.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .||...|...+.+|+..+|+..+.|..--.+......+++|..++.++....|..   .+++--+.+..-+|..++|+.+
T Consensus       597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe---Rv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE---RVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---hhhHHHhHHHHHhhhHHHHHHH
Confidence            4566666666666666666666666555555555556666666665555555541   1222233444455566666666


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  164 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~  164 (261)
                      ++++|+..                          |+++..|..+|.++.++++.+.|...|..-++.=|.+.. |..|+.
T Consensus       674 lEe~lk~f--------------------------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  674 LEEALKSF--------------------------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             HHHHHHhC--------------------------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            66665553                          445556666666666666666666666666666666665 666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCC
Q 024858          165 CLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       165 ~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      +-.+.|..-.|..+++++.-.+
T Consensus       728 leEk~~~~~rAR~ildrarlkN  749 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKN  749 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcC
Confidence            6666666666666666555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.98  E-value=3.4e-08  Score=92.77  Aligned_cols=122  Identities=18%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcH----HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc------
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSE----EAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC------   76 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~----eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~------   76 (261)
                      ++..+|+.+|++|++.+|+++.++..++.++.....+.    ..+....+.......   .........+|...      
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a---l~~~~~~~~~~~ala~~~~~  432 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA---LPELNVLPRIYEILAVQALV  432 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh---cccCcCChHHHHHHHHHHHh
Confidence            45778999999999999999999999998886654332    112222222221111   00111123445444      


Q ss_pred             -CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           77 -GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        77 -g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                       |++++|...+++++.++|                           +..++..+|.++..+|++++|+..|++|+.++|.
T Consensus       433 ~g~~~~A~~~l~rAl~L~p---------------------------s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        433 KGKTDEAYQAINKAIDLEM---------------------------SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             cCCHHHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence             678888888888888743                           3568999999999999999999999999999999


Q ss_pred             chh
Q 024858          156 ANK  158 (261)
Q Consensus       156 ~~~  158 (261)
                      ++.
T Consensus       486 ~pt  488 (517)
T PRK10153        486 ENT  488 (517)
T ss_pred             Cch
Confidence            986

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.98  E-value=8.3e-09  Score=95.78  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=132.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..|++.+.+...+++++..|.+++++...|..+..+|+-+||....+..++.+|... .=|+ ++|-++..-.+|++||.
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~-vCwH-v~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH-VCWH-VLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc-hhHH-HHHHHHhhhhhHHHHHH
Confidence            356788889999999999999999999999999999999999999999999998743 3234 48899999999999999


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLG  163 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~  163 (261)
                      +|+.||++.                          |++..+|..|+....++|+++-....-.+.++..|.+.. |..++
T Consensus        97 cy~nAl~~~--------------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A  150 (700)
T KOG1156|consen   97 CYRNALKIE--------------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA  150 (700)
T ss_pred             HHHHHHhcC--------------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999999973                          467788888888888899999888888888898888887 88888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Q 024858          164 LCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       164 ~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++...|.+..|....+.....
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            8888889888888887766553

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.98  E-value=1.9e-08  Score=95.07  Aligned_cols=130  Identities=18%  Similarity=0.062  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      ..|...+......+..++|..++.++.+.+|-.  ...++..|.++..+|+++||.+.|..++.++              
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------------  714 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------------  714 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--------------
Confidence            345567888889999999999999999999984  3456678899999999999999999998874              


Q ss_pred             hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV--VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~--~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                                  |++..+...||.++.+.|+..-|.+  .++.++++||+|+. |+.||.++.++|+.++|...|..+++
T Consensus       715 ------------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  715 ------------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             ------------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence                        5677899999999999999999999  99999999999999 99999999999999999999999999


Q ss_pred             C
Q 024858          185 G  185 (261)
Q Consensus       185 ~  185 (261)
                      .
T Consensus       783 L  783 (799)
T KOG4162|consen  783 L  783 (799)
T ss_pred             h
Confidence            6

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.98  E-value=1.7e-07  Score=94.66  Aligned_cols=179  Identities=13%  Similarity=0.076  Sum_probs=89.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~-~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ..|+++.|..+|.+..+.+.. +..++..|-..|.+.|++++|.+.++++...+.. ++...++.++..|.+.|++++|+
T Consensus       449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl  527 (1060)
T PLN03218        449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAF  527 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHH
Confidence            456666677777666654322 2344556666666666666666666666554321 01223455666666666666666


Q ss_pred             HHHHHHHHhh--cchhhhcCcchHHHhh--c---hhhhh-h-----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           84 EMLKRKLRLI--YQGEAFNGKPTKTARS--H---GKKFQ-V-----SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        84 ~~~~~al~l~--~~~~~~~~~~~~~~~~--~---~~~~~-~-----~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      ++|++.....  |....++....-.++.  .   ...+. .     -+.|+ ..+++.|-.+|.+.|++++|.+.|++..
T Consensus       528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6666655432  2111221000000000  0   00000 0     12233 2455555566666666666666666666


Q ss_pred             hhCC-Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          151 MIDP-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P-~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+. .+.. +..+...|.+.|++++|..+|++....
T Consensus       607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            5542 2223 555566666666666666666655553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.97  E-value=2.4e-08  Score=97.54  Aligned_cols=171  Identities=12%  Similarity=0.039  Sum_probs=131.7

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ...|++++|...|.+..+  | +..+|+.|...|.+.|+.++|+++++++...  .|+  . ..++.+...+.+.|+.++
T Consensus       371 ~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd--~-~T~~~ll~a~~~~g~~~~  444 (697)
T PLN03081        371 SKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN--H-VTFLAVLSACRYSGLSEQ  444 (697)
T ss_pred             HHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--H-HHHHHHHHHHhcCCcHHH
Confidence            357999999999997654  3 4557999999999999999999999998764  455  2 235567788899999999


Q ss_pred             HHHHHHHHHHhh---cchhhhc---------CcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           82 QIEMLKRKLRLI---YQGEAFN---------GKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        82 A~~~~~~al~l~---~~~~~~~---------~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      |.++|+...+..   |....|+         |...+.    ...+. .-+.|+ ..+|..|..++...|+++.|...+++
T Consensus       445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA----~~~~~~~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~  519 (697)
T PLN03081        445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA----YAMIRRAPFKPT-VNMWAALLTACRIHKNLELGRLAAEK  519 (697)
T ss_pred             HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH----HHHHHHCCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            999999987632   2212222         111100    00111 122333 45799999999999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+.++|++.. +..|+..|.+.|++++|.+++++....
T Consensus       520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            9999999987 888999999999999999999998875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.2e-08  Score=90.58  Aligned_cols=130  Identities=17%  Similarity=0.128  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCC-------c------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCS-------K------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG   96 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-------~------~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~   96 (261)
                      ...-|..+.+.|+|..|+..|++++..-+       .      ......+++|+.+|.++++|.+|+....++|++.   
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---  287 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---  287 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence            45579999999999999999999876433       1      1122345779999999999999999999999874   


Q ss_pred             hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858           97 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA  175 (261)
                                             |++..+++.-|.+|..+|+|+.|+..|++|++++|+|.. ...|..+-.+..++.+.
T Consensus       288 -----------------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  288 -----------------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             -----------------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence                                   467789999999999999999999999999999999988 77888888877777666


Q ss_pred             -HHHHHHHHhC
Q 024858          176 -RSVLEDVLYG  185 (261)
Q Consensus       176 -~~~~~~~l~~  185 (261)
                       .+.|.+++..
T Consensus       345 ekk~y~~mF~k  355 (397)
T KOG0543|consen  345 EKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhc
Confidence             6788888875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.97  E-value=6.6e-08  Score=77.65  Aligned_cols=151  Identities=15%  Similarity=0.076  Sum_probs=115.7

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      |++.+..-..+.+...|.+.. ...||..+...||+.||...|++++. +.-+++..  ...++......+++.+|...+
T Consensus        71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~--lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          71 DPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM--LLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH--HHHHHHHHHhhccHHHHHHHH
Confidence            444444444445555555443 56799999999999999999999876 44454333  334778888999999999999


Q ss_pred             HHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHH
Q 024858           87 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCL  166 (261)
Q Consensus        87 ~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l  166 (261)
                      ++..+..|.+.                        .|+.+..+|.+|..+|++..|+..|+.++...|+....+..+..+
T Consensus       148 e~l~e~~pa~r------------------------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~L  203 (251)
T COG4700         148 EDLMEYNPAFR------------------------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEML  203 (251)
T ss_pred             HHHhhcCCccC------------------------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99888643111                        345677889999999999999999999999999987777779999


Q ss_pred             HHcCCHHHHHHHHHHHHhC
Q 024858          167 IKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       167 ~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++||.++|...|..+...
T Consensus       204 a~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         204 AKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             HHhcchhHHHHHHHHHHHH
Confidence            9999999998888776653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.95  E-value=3.8e-08  Score=96.08  Aligned_cols=173  Identities=13%  Similarity=0.055  Sum_probs=110.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ...|++++|...|...   .+.+..+|..|...|.+.|+.++|+.+|+++...  .|+  .. ..+.+...|.+.|++++
T Consensus       270 ~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd--~~-t~~~ll~a~~~~g~~~~  343 (697)
T PLN03081        270 SKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID--QF-TFSIMIRIFSRLALLEH  343 (697)
T ss_pred             HHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HH-HHHHHHHHHHhccchHH
Confidence            3567888888888754   3445667888888888888888888888887653  455  22 34556777788888888


Q ss_pred             HHHHHHHHHHhhcchh--hhcCcchHHHhhch------hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q 024858           82 QIEMLKRKLRLIYQGE--AFNGKPTKTARSHG------KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM--  151 (261)
Q Consensus        82 A~~~~~~al~l~~~~~--~~~~~~~~~~~~~~------~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~--  151 (261)
                      |.+++..+++...+.+  .++... ...-..+      ..|....+| +..+|+.|...|.+.|+.++|+..|++.+.  
T Consensus       344 a~~i~~~m~~~g~~~d~~~~~~Li-~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        344 AKQAHAGLIRTGFPLDIVANTALV-DLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHHHHHHhCCCCCeeehHHHH-HHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8888888777532111  111000 0000000      112212223 345677788888888888888888887765  


Q ss_pred             hCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          152 IDPDANKACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       152 ~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +.||...+..+..++.+.|+.++|..+|+....
T Consensus       422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~  454 (697)
T PLN03081        422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE  454 (697)
T ss_pred             CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            446655566677777777777777777777765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.94  E-value=7.6e-08  Score=79.88  Aligned_cols=165  Identities=22%  Similarity=0.165  Sum_probs=115.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHH---
Q 024858            3 QLVQKDPEAAIVLFWKAINAGD---RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKK---   75 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p---~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~---   75 (261)
                      .+..|++.+|+..|.+++...|   -.+.+...+|.++...|++++|+..++++++..|+++. ..+...+|..+.+   
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~   94 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP   94 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence            4678999999999999998655   46888999999999999999999999999999998421 2334456655443   


Q ss_pred             --------cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           76 --------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        76 --------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                              ++...+|+..++..++..|... +..    .+...-    ..+....+.--..+|..|.+.|.|..|+..|+
T Consensus        95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-y~~----~A~~~l----~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~  165 (203)
T PF13525_consen   95 GILRSDRDQTSTRKAIEEFEELIKRYPNSE-YAE----EAKKRL----AELRNRLAEHELYIARFYYKRGKYKAAIIRFQ  165 (203)
T ss_dssp             HHH-TT---HHHHHHHHHHHHHHHH-TTST-THH----HHHHHH----HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred             cchhcccChHHHHHHHHHHHHHHHHCcCch-HHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                    3445689999999998765322 110    000000    00011122344678999999999999999999


Q ss_pred             HHHhhCCCchh----hhhHHHHHHHcCCHHHHH
Q 024858          148 KAQMIDPDANK----ACNLGLCLIKRTRYNEAR  176 (261)
Q Consensus       148 ~al~~~P~~~~----~~~L~~~l~~~g~~~eA~  176 (261)
                      .+++..|+...    ..-|+.+|.++|..+.|.
T Consensus       166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  166 YVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999999873    567899999999998554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.94  E-value=6.7e-08  Score=89.89  Aligned_cols=225  Identities=16%  Similarity=0.078  Sum_probs=148.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      -|+.++|..+.+.++..|+...-.|+.+|.++...++|+|||+.|+.+++..|+  +..+..-|+.+-.+.|+++-....
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHH
Confidence            478899999999999999999999999999999999999999999999999999  455666788888999999999999


Q ss_pred             HHHHHHhhcchhhhc----------CcchHHHhhchhhhhhhc--CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           86 LKRKLRLIYQGEAFN----------GKPTKTARSHGKKFQVSV--RQET-----SRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        86 ~~~al~l~~~~~~~~----------~~~~~~~~~~~~~~~~~l--~p~~-----~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      -.+.|.++|...++.          |.... +-..-..+.-..  .|+.     ......-..+....|.+++|.+.+..
T Consensus       132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~-A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~  210 (700)
T KOG1156|consen  132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKM-ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD  210 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence            999999876433221          10000 000000111011  1222     22334456666777887777666554


Q ss_pred             HHhhCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHH-----------HHHHHHHhcCCCC
Q 024858          149 AQMIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAE-----------ELLLELESKQPPP  213 (261)
Q Consensus       149 al~~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~-----------~~l~~l~~~~~~~  213 (261)
                         ..|.-.+    ...-|..+.++|++++|..+|...+..+|........+..+.           .++..+....|-.
T Consensus       211 ---~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  211 ---NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             ---hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence               3444333    235689999999999999999999998432222111112222           2222233333434


Q ss_pred             chhhhcccch--hHHHHHHHHHHHH
Q 024858          214 DLSDLLGLNL--EDEFVNGLEEMVR  236 (261)
Q Consensus       214 ~~~~~~~~~~--~d~~~~~~~~~l~  236 (261)
                      ..+..++.++  +++|-+..+.++.
T Consensus       288 e~p~Rlplsvl~~eel~~~vdkyL~  312 (700)
T KOG1156|consen  288 ECPRRLPLSVLNGEELKEIVDKYLR  312 (700)
T ss_pred             ccchhccHHHhCcchhHHHHHHHHH
Confidence            4444444444  5777777777765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.94  E-value=3.9e-08  Score=74.54  Aligned_cols=101  Identities=21%  Similarity=0.125  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      .+++.+|.++...|+.++|+..|++++..+++.. .......+|..|...|++++|+..+++++...|.+.         
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~---------   72 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE---------   72 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence            4688899999999999999999999999766521 233455689999999999999999999887644111         


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                                    -+..+...++.++...|+++||+..+-.++.
T Consensus        73 --------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 --------------LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             --------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                          1345667789999999999999999988875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=1.8e-08  Score=95.17  Aligned_cols=128  Identities=16%  Similarity=0.083  Sum_probs=114.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..+..++|..++..+-+..|-.+..++..|.++..+|...||.+.|..++.++|++.  .....+|.+|.+.|+..-|
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle~G~~~la  737 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLELGSPRLA  737 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhCCcchH
Confidence            34567788888899999999999999999999999999999999999999999999953  3455689999999998888


Q ss_pred             HH--HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           83 IE--MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        83 ~~--~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      ..  .++.+++++                          |.++++|++||.++..+|+.++|..+|.-|+++++.+|-
T Consensus       738 ~~~~~L~dalr~d--------------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  738 EKRSLLSDALRLD--------------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHhhC--------------------------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            88  888888864                          568899999999999999999999999999999999985

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.93  E-value=3.7e-08  Score=84.85  Aligned_cols=109  Identities=15%  Similarity=0.163  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           27 DSALKDMAVVM-KQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        27 ~~al~~Lg~~~-~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      ....+..+..+ ...|++++|+..|+.+++.+|++.. ......+|.+|...|++++|+..|+++++..|.         
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------  212 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------  212 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence            45677777766 5679999999999999999998521 245677999999999999999999999987541         


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                    .|..++++..+|.++..+|++++|...|+++++..|++..
T Consensus       213 --------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        213 --------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             --------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence                          2577899999999999999999999999999999999874

>PRK11906 transcriptional regulator; Provisional

Probab=98.92  E-value=5.8e-08  Score=88.10  Aligned_cols=149  Identities=9%  Similarity=0.032  Sum_probs=119.6

Q ss_pred             CHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858            8 DPEAAIVLFWKAI---NAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK   75 (261)
Q Consensus         8 ~~~~A~~~~~~al---~~~p~~~~al~~Lg~~~~~~---------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~   75 (261)
                      +.+.|..+|.+++   .++|..+.++..++.++.+.         ....+|..+.++++.++|.|+..  ...+|.++.-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a--~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI--LAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHh
Confidence            4567899999999   89999999999999888654         23456677888999999997543  4457777778


Q ss_pred             cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      .|+++.|+..+++++.++                          |+.+.+++..|++..-.|+.++|....+++++++|.
T Consensus       351 ~~~~~~a~~~f~rA~~L~--------------------------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHS--------------------------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             hcchhhHHHHHHHHhhcC--------------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            899999999999998874                          578899999999999999999999999999999998


Q ss_pred             chh--hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          156 ANK--ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       156 ~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      -..  ...+-.-..-....++|+..|-+-.+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            765  44554423345678888888866433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.92  E-value=5.2e-09  Score=94.67  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+|+++.+++|+|.+|..+|+|++|+..|++|++++|++.   . |+|+|.+|..+|++++|+..+++++..
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56799999999999999999999999999999999999997   3 899999999999999999999999996

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=2.1e-08  Score=94.29  Aligned_cols=167  Identities=16%  Similarity=0.084  Sum_probs=114.0

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      |=...|...|++        .+.|.....+|...|+..+|..+.++-++..|+   ..++..||++....--|++|.++.
T Consensus       412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d---~~lyc~LGDv~~d~s~yEkawEls  480 (777)
T KOG1128|consen  412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD---PRLYCLLGDVLHDPSLYEKAWELS  480 (777)
T ss_pred             chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc---chhHHHhhhhccChHHHHHHHHHh
Confidence            344555555553        345777788888888888888888888875444   236666777766666666666666


Q ss_pred             HHHHHhh--cchhhhcCcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           87 KRKLRLI--YQGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        87 ~~al~l~--~~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +..-...  .-+.....  ........+.+.  ++++|-...+|+++|.+..+.+++..|..+|.+.+.++|++.. |.|
T Consensus       481 n~~sarA~r~~~~~~~~--~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnN  558 (777)
T KOG1128|consen  481 NYISARAQRSLALLILS--NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNN  558 (777)
T ss_pred             hhhhHHHHHhhcccccc--chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhh
Confidence            5543321  00000000  000111112222  5677777888999999999999999999999999999999988 899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      |+.+|++.|+..+|...+++++..+
T Consensus       559 ls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  559 LSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999888875

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.91  E-value=1.6e-07  Score=83.13  Aligned_cols=182  Identities=16%  Similarity=0.131  Sum_probs=137.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------------------------
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG---------------------------   55 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~---------------------------   55 (261)
                      ++..||+..|..-..+++...|.++..+...-.+|...|++.+...++.+..+                           
T Consensus       163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~  242 (400)
T COG3071         163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD  242 (400)
T ss_pred             HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence            56788999999999999999999999999999999999999888765433321                           


Q ss_pred             -----------cCCch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh--cC--cchHHHhhchhhhh--h
Q 024858           56 -----------LCSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF--NG--KPTKTARSHGKKFQ--V  116 (261)
Q Consensus        56 -----------~~P~~--~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~--~~--~~~~~~~~~~~~~~--~  116 (261)
                                 --|..  .+..+...++.=+..+|++++|.+..+++++...++...  .+  .+.+ .....+...  +
T Consensus       243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d-~~~l~k~~e~~l  321 (400)
T COG3071         243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGD-PEPLIKAAEKWL  321 (400)
T ss_pred             ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCC-chHHHHHHHHHH
Confidence                       11210  011222345556688999999999999999975433211  00  0000 000011111  4


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .--|++|.++..||..|...+.|.+|..+++.|++..|+..++..+|.++.++|+..+|.+++++++..
T Consensus       322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            566899999999999999999999999999999999999999999999999999999999999999875

>PLN03077 Protein ECB2; Provisional

Probab=98.91  E-value=6e-08  Score=96.80  Aligned_cols=170  Identities=12%  Similarity=0.068  Sum_probs=130.8

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ...|+.++|...|...    +.+..+|..|...|.+.|+.++|+++++++...  .|+.  . .++.+...|.+.|++++
T Consensus       535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~--~-T~~~ll~a~~~~g~v~e  607 (857)
T PLN03077        535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE--V-TFISLLCACSRSGMVTQ  607 (857)
T ss_pred             HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--c-cHHHHHHHHhhcChHHH
Confidence            3478999999999875    455678999999999999999999999998774  4662  2 34456678899999999


Q ss_pred             HHHHHHHHHHhh--cch-hhhc---------CcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           82 QIEMLKRKLRLI--YQG-EAFN---------GKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        82 A~~~~~~al~l~--~~~-~~~~---------~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      |..+|+...+..  .|+ ..|+         |...+.    ...+. ..++|+ +.+|..|-.++...|+.+.++...++
T Consensus       608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA----~~~~~~m~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~  682 (857)
T PLN03077        608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA----YNFINKMPITPD-PAVWGALLNACRIHRHVELGELAAQH  682 (857)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH----HHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999987432  122 2222         111110    01111 235565 56788888889999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++++|++.. +..|+++|...|++++|.++.+.....
T Consensus       683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            9999999998 889999999999999999999988775

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=1.1e-08  Score=96.09  Aligned_cols=173  Identities=17%  Similarity=0.114  Sum_probs=121.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      .-|+-.+|....++-++ .|+.+..+..+|-+..+..-++.|.++.+..-..        +...+|......++|.++..
T Consensus       436 ~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~  506 (777)
T KOG1128|consen  436 LLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADK  506 (777)
T ss_pred             HhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHH
Confidence            45677788888888877 6666667777777776666666665554332211        11223333345677777777


Q ss_pred             HHHHHHHhhcc--hhhhc-Ccch-HHHhhch--hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858           85 MLKRKLRLIYQ--GEAFN-GKPT-KTARSHG--KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        85 ~~~~al~l~~~--~~~~~-~~~~-~~~~~~~--~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      .++..++++|-  +.+|. |... +......  +.|+  +.++|++..+|+||+.+|...|+..+|...+++|++.+-++
T Consensus       507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            77777777542  23333 2110 0000111  1122  67789999999999999999999999999999999999777


Q ss_pred             hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      .. |.|.-.+..+.|.+++|++.|.+.+..+
T Consensus       587 w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  587 WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            78 9999999999999999999999998863

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.90  E-value=9.6e-08  Score=89.09  Aligned_cols=180  Identities=16%  Similarity=0.119  Sum_probs=146.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...++.++|..+++.+++.-|.....|..+|.++.++++.+.|.++|..-++.+|..  ..++..|+.+=.+.|..-.|-
T Consensus       662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--ipLWllLakleEk~~~~~rAR  739 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--IPLWLLLAKLEEKDGQLVRAR  739 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--chHHHHHHHHHHHhcchhhHH
Confidence            346788999999999999999999999999999999999999999999999999984  456777899888999999999


Q ss_pred             HHHHHHHHhhcchhhh----------cCcc-------hHHHhhchh------------------h-hh--hhcCCCcHHH
Q 024858           84 EMLKRKLRLIYQGEAF----------NGKP-------TKTARSHGK------------------K-FQ--VSVRQETSRL  125 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~----------~~~~-------~~~~~~~~~------------------~-~~--~~l~p~~~~~  125 (261)
                      ..+.++.-.+|.+..+          .|..       .+....++.                  + +.  +.--.+++.+
T Consensus       740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV  819 (913)
T KOG0495|consen  740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV  819 (913)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence            9999988877654322          0111       111111110                  0 00  1112357788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +..+|..+....+++.|.+.|.+|++.+||+.+ |..+-.++...|.-++-.++|.+....
T Consensus       820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999 999999999999999999999999987

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.89  E-value=4.6e-07  Score=77.31  Aligned_cols=137  Identities=17%  Similarity=0.076  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      .+..++..|..+.+.|++++|++.|++++...|.... ......+|.+|.+.|++++|+..+++.++..|.         
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---------  101 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------  101 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---------
Confidence            5667888999999999999999999999999997422 223456899999999999999999999998662         


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCCCchh--------
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT------------------NFMAAEVVYQKAQMIDPDANK--------  158 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g------------------~~~eA~~~~~~al~~~P~~~~--------  158 (261)
                                    .|+.+.+++.+|.++...+                  ...+|+..|++.+...|++.-        
T Consensus       102 --------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl  167 (243)
T PRK10866        102 --------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL  167 (243)
T ss_pred             --------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence                          1345678889998865554                  136799999999999998742        


Q ss_pred             ----------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          159 ----------ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       159 ----------~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                                -+..|..|.+.|+|..|+.-++.++..
T Consensus       168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~  204 (243)
T PRK10866        168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD  204 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence                      134788999999999999999999996

>PRK15331 chaperone protein SicA; Provisional

Probab=98.88  E-value=4e-08  Score=77.71  Aligned_cols=129  Identities=10%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC
Q 024858            8 DPEAAIVLFWKAINA----------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG   77 (261)
Q Consensus         8 ~~~~A~~~~~~al~~----------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g   77 (261)
                      +.++-...+..++..          .++.-+.+...|.-+.++|++++|..+|+-+...+|.++  .....||.++..+|
T Consensus         8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k   85 (165)
T PRK15331          8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKK   85 (165)
T ss_pred             hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHH
Confidence            444445555666653          344556677889999999999999999999999999854  34566999999999


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      +|++|+..|--+..+.                          +++|...+..|.||..+|+.++|..+|..++. .|.+.
T Consensus        86 ~y~~Ai~~Y~~A~~l~--------------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331         86 QFQKACDLYAVAFTLL--------------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHHHHHHHHHcc--------------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            9999999999988763                          35667789999999999999999999999999 56655


Q ss_pred             hhhhHHHH
Q 024858          158 KACNLGLC  165 (261)
Q Consensus       158 ~~~~L~~~  165 (261)
                      .....+..
T Consensus       139 ~l~~~A~~  146 (165)
T PRK15331        139 SLRAKALV  146 (165)
T ss_pred             HHHHHHHH
Confidence            43333333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=4.4e-08  Score=83.94  Aligned_cols=177  Identities=15%  Similarity=0.091  Sum_probs=135.9

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.+.++..|++++.--.+.+|.+-..+..||.+|....++.+|.+.|++.-.+.|..+.-  ...-+..+.+.+.+.+|+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY--rlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY--RLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH--HHHHHHHHHHhcccHHHH
Confidence            455678888888888888999888899999999999999999999999999999984333  333566667889999998


Q ss_pred             HHHHHHHHhhcchhhhcC--cchHHHh-hch----hhhhhhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           84 EMLKRKLRLIYQGEAFNG--KPTKTAR-SHG----KKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~--~~~~~~~-~~~----~~~~~~l~p--~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .+....... +  +..+.  ....... +.+    ....+.-.|  +.+++..|.|.+..+.|++++|.+-|+.|++...
T Consensus        99 rV~~~~~D~-~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen   99 RVAFLLLDN-P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHHhcCC-H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            877665442 1  00000  0000000 000    111133345  5788999999999999999999999999999999


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      -++- .+|++.+....|+++.|+.+..+++..
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            8888 999999999999999999999999886

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=6.5e-07  Score=75.13  Aligned_cols=129  Identities=9%  Similarity=-0.004  Sum_probs=89.4

Q ss_pred             hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH----Hhhchh---hhh--hhcCCCcHHH
Q 024858           55 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT----ARSHGK---KFQ--VSVRQETSRL  125 (261)
Q Consensus        55 ~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~----~~~~~~---~~~--~~l~p~~~~~  125 (261)
                      .+.|+.+ . +.-...-.....|+.+-|-.++++.-...| +...+++....    .....+   .+.  +.=+|.+.-+
T Consensus        46 ~~g~e~w-~-l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~  122 (289)
T KOG3060|consen   46 ALGDEIW-T-LYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI  122 (289)
T ss_pred             ccCchHH-H-HHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence            4566532 2 222233344678999999999999776653 32222111000    000001   111  3445777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      +..--.+...+|+..+|++....-++..|.+.+ |..|+..|...|+|++|.-+|++++-.+
T Consensus       123 ~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  123 RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            777777888899999999999999999999999 9999999999999999999999999983

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=7.8e-08  Score=85.43  Aligned_cols=182  Identities=21%  Similarity=0.116  Sum_probs=131.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh----------------------
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS----------------------   61 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~----------------------   61 (261)
                      ..++++.+|+..|..||...|+++..|.+-+.++...|++++|.--.++.+++.|+..                      
T Consensus        60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~  139 (486)
T KOG0550|consen   60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK  139 (486)
T ss_pred             HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence            3467889999999999999999999999999999999999988876666655554310                      


Q ss_pred             ----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch-hhh--cCcchHHHhhc
Q 024858           62 ----------------------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-EAF--NGKPTKTARSH  110 (261)
Q Consensus        62 ----------------------------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~-~~~--~~~~~~~~~~~  110 (261)
                                                  -..+-.+-+.++...|++++|+..=-..+++++.+ .+.  +|........+
T Consensus       140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~  219 (486)
T KOG0550|consen  140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA  219 (486)
T ss_pred             hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence                                        01111233567888999999998888888876432 111  12110000000


Q ss_pred             ---hhhhh--hhcCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-----hhhHHHHHHH
Q 024858          111 ---GKKFQ--VSVRQET------------SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-----ACNLGLCLIK  168 (261)
Q Consensus       111 ---~~~~~--~~l~p~~------------~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-----~~~L~~~l~~  168 (261)
                         ...++  +.+.|++            -..+..-|.-....|++.+|.+.|..+|.++|++..     +.|.+.+..+
T Consensus       220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r  299 (486)
T KOG0550|consen  220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR  299 (486)
T ss_pred             HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence               01121  3444443            335567788889999999999999999999999863     5689999999


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 024858          169 RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       169 ~g~~~eA~~~~~~~l~~  185 (261)
                      .|+..+|+.-+..++..
T Consensus       300 Lgrl~eaisdc~~Al~i  316 (486)
T KOG0550|consen  300 LGRLREAISDCNEALKI  316 (486)
T ss_pred             cCCchhhhhhhhhhhhc
Confidence            99999999999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.81  E-value=7.7e-09  Score=72.12  Aligned_cols=65  Identities=29%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~----~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +...++.++|.+|..+|++++|+.+|++++.+    .++++   . +.++|.++..+|++++|+.++++++..
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34578999999999999999999999999975    22332   3 579999999999999999999999874

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=7.5e-07  Score=79.37  Aligned_cols=171  Identities=11%  Similarity=0.035  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      +..++-.-...-|++.+.+..+|.++...|++++|+..|+++..++|..  ...--..|.++...|+++.-..+-...+.
T Consensus       217 ~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~--i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~  294 (564)
T KOG1174|consen  217 QTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN--VEAMDLYAVLLGQEGGCEQDSALMDYLFA  294 (564)
T ss_pred             hHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh--hhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence            3344444456778999999999999999999999999999999999973  22223356667899999999888888888


Q ss_pred             hhcch--hhhc-Ccc---hHH---HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           92 LIYQG--EAFN-GKP---TKT---ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        92 l~~~~--~~~~-~~~---~~~---~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +....  .|++ +..   .+.   +...+. -.|.++|.+..++..-|.++.+.|+.++|+-.||.|..+.|-... +..
T Consensus       295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e-K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G  373 (564)
T KOG1174|consen  295 KVKYTASHWFVHAQLLYDEKKFERALNFVE-KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG  373 (564)
T ss_pred             hhhcchhhhhhhhhhhhhhhhHHHHHHHHH-HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence            75322  3444 110   010   100000 016888999999999999999999999999999999999999998 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |-.+|...|++.||...-..+...
T Consensus       374 L~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  374 LFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHH
Confidence            999999999999999887766553

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.79  E-value=1.8e-08  Score=68.17  Aligned_cols=53  Identities=26%  Similarity=0.448  Sum_probs=49.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          133 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       133 ~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.++|++++|+..|++++..+|++.. ++.+|.+|.++|++++|..++++++..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999 999999999999999999999999997

...

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.79  E-value=1.9e-08  Score=83.05  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcC
Q 024858          132 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ  210 (261)
Q Consensus       132 ~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~  210 (261)
                      ...+.++.+.|.+.|.+++++-|+... |+.+|..-.+.|+++.|.+.|+++++.   ++++..   -+..-|+-+....
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l---dp~D~~---gaa~kLa~lg~~e   77 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL---DPEDHG---GAALKLAVLGRGE   77 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC---Cccccc---chhhhHHhhcCCC
Confidence            445789999999999999999999999 999999999999999999999999998   443322   3667777787767


Q ss_pred             CCCchhhhcccchhHHHHHHHHHHHHhhccCCC
Q 024858          211 PPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRS  243 (261)
Q Consensus       211 ~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~  243 (261)
                      .|..+++.|+..|||.|++.|+..+...++|+.
T Consensus        78 ~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v  110 (287)
T COG4976          78 TPEKPPSAYVETLFDQYAERFDHILVDKLGYSV  110 (287)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            778888899999999999999999877667763

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=4.9e-07  Score=83.48  Aligned_cols=184  Identities=19%  Similarity=0.172  Sum_probs=118.9

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----------------------------
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-----------------------------   54 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~-----------------------------   54 (261)
                      ..++++++|+.-..+.+...|+...+++---+.+++.++|++|...++.-.                             
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~  102 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL  102 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence            457889999999999999989988888776677777777777765433211                             


Q ss_pred             -hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh--hh-cCcchHHHhhchhhhh-hhcCCC-cHHHHHH
Q 024858           55 -GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE--AF-NGKPTKTARSHGKKFQ-VSVRQE-TSRLLGN  128 (261)
Q Consensus        55 -~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~--~~-~~~~~~~~~~~~~~~~-~~l~p~-~~~~~~~  128 (261)
                       .+++.+  ..+.-+-+.++.+.|+|++|..+|+..++-..++.  -. .+.............+ +-..|+ .-+.++|
T Consensus       103 ~~~~~~~--~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN  180 (652)
T KOG2376|consen  103 KGLDRLD--DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYN  180 (652)
T ss_pred             hcccccc--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHH
Confidence             111111  01223346667788888888888888776532110  00 0000000000010011 122233 5568899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-------CCCc--------hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 024858          129 LAWAYMQKTNFMAAEVVYQKAQMI-------DPDA--------NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG  189 (261)
Q Consensus       129 Lg~~~~~~g~~~eA~~~~~~al~~-------~P~~--------~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~  189 (261)
                      .+.++...|+|.+|++.+++|+.+       +-++        .. ...|+.+|..+|+.+||...|..++..++.+
T Consensus       181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999542       1111        12 4579999999999999999999999985443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.1e-07  Score=84.56  Aligned_cols=106  Identities=21%  Similarity=0.209  Sum_probs=85.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      -|+.|.+.|+|..|+..|++++...+....+...       ..+... .   -.-.++.||+.||..+++|.+|+....+
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e-------e~~~~~-~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE-------EQKKAE-A---LKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH-------HHHHHH-H---HHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            5677899999999999999999875321111100       000000 0   0123789999999999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|.++|+|.. .+.-|.++..+|+|+.|+..|++++..
T Consensus       283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.75  E-value=5.8e-08  Score=67.60  Aligned_cols=70  Identities=26%  Similarity=0.386  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      ...+.+|.+|..+|++++|+..|++++++..              ..+...     |+...++.++|.+|..+|++++|+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~-----~~~a~~~~~lg~~~~~~g~~~~A~   66 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEE--------------QLGDDH-----PDTANTLNNLGECYYRLGDYEEAL   66 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--------------HTTTHH-----HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------HHCCCC-----HHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3456799999999999999999999999731              111100     123468999999999999999999


Q ss_pred             HHHHHHHhh
Q 024858          144 VVYQKAQMI  152 (261)
Q Consensus       144 ~~~~~al~~  152 (261)
                      .+|++++++
T Consensus        67 ~~~~~al~i   75 (78)
T PF13424_consen   67 EYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999986

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=3.7e-08  Score=66.61  Aligned_cols=65  Identities=22%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI   70 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~   70 (261)
                      +..|++++|+..|++++..+|++.+++..+|.++...|++++|.+.+++++..+|++  ..+..+++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence            567999999999999999999999999999999999999999999999999999984  33444444

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=8.2e-08  Score=65.85  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=20.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      ++..+...|.+|..+|++.+|...|+++++..|++..
T Consensus        28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen   28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            3445555555555555555555555555555555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=7.8e-08  Score=65.98  Aligned_cols=57  Identities=32%  Similarity=0.407  Sum_probs=54.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          129 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       129 Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |..+|.+++++++|+.++++++.++|+++. +...|.++..+|++++|+..+++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999 999999999999999999999999997

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.71  E-value=7.4e-08  Score=87.30  Aligned_cols=71  Identities=10%  Similarity=0.047  Sum_probs=64.4

Q ss_pred             cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      .+|+++.++.++|.+|..+|++++|+..|+++++++|+++.. ..++++|.+|..+|++++|++.|++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999996422 34566999999999999999999999997

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.69  E-value=5.7e-07  Score=81.53  Aligned_cols=114  Identities=19%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..++++.|+.+|++..+.+|+   +...|+.++...++-.+|+..+.++++..|.+  ..+....+..+.+.|+++.|++
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHH
Confidence            457899999999999988876   44568999999999999999999999999985  3466678999999999999999


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      +.++++.+.|                          +.-..|..|+.+|..+|++++|+..+..+
T Consensus       256 iAk~av~lsP--------------------------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  256 IAKKAVELSP--------------------------SEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHhCc--------------------------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999854                          45579999999999999999999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.69  E-value=1.5e-06  Score=87.17  Aligned_cols=165  Identities=15%  Similarity=0.018  Sum_probs=123.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLY   73 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~-----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly   73 (261)
                      ....|++++|..++++++...|..     ..++..+|.++...|++++|...+++++.....    .........++.++
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            456899999999999999743332     245677999999999999999999998765332    11122345688999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ...|++++|...+++++.+...              .+..-    .+....++..+|.++..+|++++|...+++++.+.
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~--------------~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEE--------------QHLEQ----LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHH--------------hcccc----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            9999999999999999987321              00000    00012346678999999999999999999998864


Q ss_pred             CC----c-hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PD----A-NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~----~-~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..    . .. +..+|.++...|++++|...+.++...
T Consensus       604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            32    1 23 457899999999999999999988653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.68  E-value=4.2e-07  Score=77.22  Aligned_cols=106  Identities=15%  Similarity=0.070  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  108 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~  108 (261)
                      .++.+.-+...|+|.+|+..|...++.+|+.. .....+.||.++..+|++++|...|..+.+-.|.             
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-------------  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-------------  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence            67778888888888888888888888888631 1134556888888888888888888888875441             


Q ss_pred             hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                .|.-|++++-||.+...+|+.++|..+|+++++..|+...
T Consensus       211 ----------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         211 ----------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             ----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence                      1335678888888888888888888888888888888765

>PLN03077 Protein ECB2; Provisional

Probab=98.65  E-value=2.4e-06  Score=85.40  Aligned_cols=194  Identities=11%  Similarity=0.011  Sum_probs=134.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~-~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ..|+++.+...+..+++.+-. +......|-..|.+.|+.++|...++..   .|+   ...++.++..|.+.|+.++|+
T Consensus       501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d---~~s~n~lI~~~~~~G~~~~A~  574 (857)
T PLN03077        501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD---VVSWNILLTGYVAHGKGSMAV  574 (857)
T ss_pred             hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC---hhhHHHHHHHHHHcCCHHHHH
Confidence            457889999999998874432 2334566788999999999999999886   444   235677889999999999999


Q ss_pred             HHHHHHHHhh--cchhhhcCcchHHHhhch------hhhh-----hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           84 EMLKRKLRLI--YQGEAFNGKPTKTARSHG------KKFQ-----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        84 ~~~~~al~l~--~~~~~~~~~~~~~~~~~~------~~~~-----~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      ++|++..+..  |....|+..... +...+      ..|.     .-+.|+ ...+..+..+|.+.|+++||...+++. 
T Consensus       575 ~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-  651 (857)
T PLN03077        575 ELFNRMVESGVNPDEVTFISLLCA-CSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-  651 (857)
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHH-HhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence            9999988742  332233211000 00000      1111     123444 367888999999999999999999885 


Q ss_pred             hhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHH
Q 024858          151 MIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELE  207 (261)
Q Consensus       151 ~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~  207 (261)
                      .+.|+...|..|-..+...|+.+.+....+++++..+.+..          ..+.++.+..+...+.
T Consensus       652 ~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            46777555877777888899999999999999887333221          2344555666655554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.62  E-value=4.3e-06  Score=83.86  Aligned_cols=163  Identities=14%  Similarity=-0.037  Sum_probs=122.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-h--HHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-S--QESLDNVLI   70 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~---------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~--~~~~~~~L~   70 (261)
                      .+..|++++|..++..+...-+.         .......+|.++...|++++|...+++++...|.. .  .....+.++
T Consensus       419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg  498 (903)
T PRK04841        419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG  498 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence            35678999999999988753111         23445567889999999999999999998865542 1  122346688


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .++...|++++|...+++++....              ..+....      ...++.++|.++..+|++++|...+++++
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~--------------~~g~~~~------~~~~~~~la~~~~~~G~~~~A~~~~~~al  558 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMAR--------------QHDVYHY------ALWSLLQQSEILFAQGFLQAAYETQEKAF  558 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHh--------------hhcchHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            889999999999999999998632              1111000      12467889999999999999999999999


Q ss_pred             hhCC-----Cc---hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          151 MIDP-----DA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P-----~~---~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+-.     +.   .. +..+|.++..+|++++|...+++++..
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            8632     11   12 447799999999999999999998774

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.62  E-value=1.8e-06  Score=66.95  Aligned_cols=109  Identities=19%  Similarity=0.109  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      .+..+..-|.-..+.|+|.+|++.++.+....|-. ........|+.+|.+.|++++|+..+++-+++.|..        
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h--------   80 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH--------   80 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Confidence            45668888999999999999999999999999952 112355669999999999999999999999997621        


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCch
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN---------------FMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~---------------~~eA~~~~~~al~~~P~~~  157 (261)
                                     |+-+-+++..|.++..+..               ..+|...|++.+...|++.
T Consensus        81 ---------------p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   81 ---------------PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             ---------------CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence                           2345588888999988877               8888888888888888875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.59  E-value=2.7e-07  Score=82.18  Aligned_cols=179  Identities=22%  Similarity=0.210  Sum_probs=120.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHH----HHHHHHHHHHcCCcHHHHHHHHHHH----hcCCc--hhHHHHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSA----LKDMAVVMKQLDRSEEAIEAIKSFR----GLCSK--QSQESLDNVLIDLYK   74 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~a----l~~Lg~~~~~~g~~~eAi~~~~~~~----~~~P~--~~~~~~~~~L~~ly~   74 (261)
                      .-||....+.+|++|++.+.++-..    +..||..|.-+++|++|.++-..-+    .++..  .+. .-+| ||+++.
T Consensus        29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK-ssgN-LGNtlK  106 (639)
T KOG1130|consen   29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK-SSGN-LGNTLK  106 (639)
T ss_pred             hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc-cccc-ccchhh
Confidence            3578889999999999988876544    4458888888999999998643321    12221  221 1233 788889


Q ss_pred             HcCCHHHHHHHHHHHHHhhcc--------------hhhhc--CcchHH--H---hhch-----------hhhh--hhcCC
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQ--------------GEAFN--GKPTKT--A---RSHG-----------KKFQ--VSVRQ  120 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~--------------~~~~~--~~~~~~--~---~~~~-----------~~~~--~~l~p  120 (261)
                      ..|.|++|+.+..+-|.+...              ++.|.  |+....  .   ...+           +.+.  +++.-
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887421              11111  111000  0   0000           0011  11111


Q ss_pred             C------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          121 E------TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       121 ~------~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .      .-+++.|||..|.-+|+|+.|+.+.+.-|.+.....      . +.|||+|++-.|+++.|+++|++.+..
T Consensus       187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            1      123678999999999999999999999888765433      2 469999999999999999999987764

>PRK11906 transcriptional regulator; Provisional

Probab=98.58  E-value=1.6e-06  Score=78.92  Aligned_cols=116  Identities=10%  Similarity=0.129  Sum_probs=93.1

Q ss_pred             CcHHHHHHHHHHH---hcCCchhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858           42 RSEEAIEAIKSFR---GLCSKQSQESLDNVLIDLYKKC---------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  109 (261)
Q Consensus        42 ~~~eAi~~~~~~~---~~~P~~~~~~~~~~L~~ly~~~---------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~  109 (261)
                      ..+.|..++.+++   .++|+.+  ..+..++.++...         ....+|.+.-+++++                  
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a--~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve------------------  332 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKT--ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD------------------  332 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh------------------
Confidence            4567778899999   9999843  3444455555432         223344444444444                  


Q ss_pred             chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                              ++|+++.++..+|.++...|+++.|+..|++|+.++|+.+. ++..|.+..-.|+.++|.+..++++..
T Consensus       333 --------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        333 --------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             --------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                    45788999999999999999999999999999999999999 999999999999999999999999998

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.55  E-value=1.9e-05  Score=63.03  Aligned_cols=88  Identities=24%  Similarity=0.293  Sum_probs=72.5

Q ss_pred             hhcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHHHcCCHH
Q 024858            4 LVQKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID-LYKKCGKVE   80 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~--~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~-ly~~~g~~~   80 (261)
                      ...+++..+...+...+.  ..+.....+..++......+.+.+++..+..+....+....  ....... +|...|+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  147 (291)
T COG0457          70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL--AEALLALGALYELGDYE  147 (291)
T ss_pred             HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch--HHHHHHHHHHHHcCCHH
Confidence            456788899999998887  78888999999999999999999999999999998776311  2222344 789999999


Q ss_pred             HHHHHHHHHHHhh
Q 024858           81 EQIEMLKRKLRLI   93 (261)
Q Consensus        81 eA~~~~~~al~l~   93 (261)
                      +|+..|.+++...
T Consensus       148 ~a~~~~~~~~~~~  160 (291)
T COG0457         148 EALELYEKALELD  160 (291)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998853

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.53  E-value=1.6e-07  Score=58.22  Aligned_cols=41  Identities=27%  Similarity=0.205  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  164 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~  164 (261)
                      +++..+|.+|.++|++++|++.|+++++.+|+++. |..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            57899999999999999999999999999999999 888875

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.52  E-value=2.3e-05  Score=62.49  Aligned_cols=175  Identities=24%  Similarity=0.224  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~--~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      +....+...+...+...+.  ........+..+...+.+..++..+.....  ..+.  ........+..+...+.+.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  114 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN--LAEALLNLGLLLEALGKYEEA  114 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHHHhhHHHH
Confidence            4566677888888887776  367788889999999999999998888876  4554  233445577888888999999


Q ss_pred             HHHHHHHHHhhcchhh---hc--------CcchHHHhhchhhhhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           83 IEMLKRKLRLIYQGEA---FN--------GKPTKTARSHGKKFQVSVRQ---ETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~---~~--------~~~~~~~~~~~~~~~~~l~p---~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      +..+.+++...+....   ..        +......... ... +.+.|   ........++..+...+++++|+..+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELY-EKA-LELDPELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHH-HHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence            9999998876432100   00        0000000000 000 11222   2233334444444555555555555555


Q ss_pred             HHhhCCC-chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~-~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++...|+ ... ...++.++...+++++|...+.+++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  231 (291)
T COG0457         193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL  231 (291)
T ss_pred             HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence            5555555 343 445555555555555555555555553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.46  E-value=4e-06  Score=73.32  Aligned_cols=129  Identities=17%  Similarity=0.088  Sum_probs=92.8

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~   79 (261)
                      +.|..++++.|...+...-+.+++..-+....+.+....|  .+.+|.-.|+......|..  ..+.+.++.++..+|+|
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~~  217 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGHY  217 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCH
Confidence            3467788888888888877777665433333344444444  6888888888877776552  34566678888889999


Q ss_pred             HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCchh
Q 024858           80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-MAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~-~eA~~~~~~al~~~P~~~~  158 (261)
                      ++|+..+++++..                          +|++++++.|++.+...+|+. +++.++..+....+|+++-
T Consensus       218 ~eAe~~L~~al~~--------------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  218 EEAEELLEEALEK--------------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHHHHh--------------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            9999888887765                          356789999999999999999 6677788888889999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.40  E-value=7e-07  Score=51.85  Aligned_cols=34  Identities=35%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858          123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      +.+|.++|.+|..+|++++|+..|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3589999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.38  E-value=1.7e-05  Score=74.58  Aligned_cols=131  Identities=18%  Similarity=0.117  Sum_probs=98.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..|++++|+.+..+||...|..++.+...|.++...|++.+|.+.++.+..+++.|  ..+.+-.+.-+.+.|+.++|+.
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~  283 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEK  283 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHH
Confidence            46888999999999999999999999999999999999999999999999998873  4456667777788999999988


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      ....-.+-..  ....+ ...        .+      --+....-|.+|.++|++..|++.|..+.+..-
T Consensus       284 ~~~~Ftr~~~--~~~~~-L~~--------mQ------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  284 TASLFTREDV--DPLSN-LND--------MQ------CMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHhhcCCCC--CcccC-HHH--------HH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            7776443210  00000 000        00      012334579999999999999999999998654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.38  E-value=1.6e-05  Score=61.67  Aligned_cols=80  Identities=20%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      -|.-..+.|+|++|++.++.+....|.+.                       -.+.+...||.+|...|++++|+..+++
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-----------------------ya~qAqL~l~yayy~~~~y~~A~a~~~r   72 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGE-----------------------YAEQAQLDLAYAYYKQGDYEEAIAAYDR   72 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCc-----------------------ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            56666899999999999999877655321                       1245789999999999999999999999


Q ss_pred             HHhhCCCchh----hhhHHHHHHHcCC
Q 024858          149 AQMIDPDANK----ACNLGLCLIKRTR  171 (261)
Q Consensus       149 al~~~P~~~~----~~~L~~~l~~~g~  171 (261)
                      -++++|+++.    ++..|.++..+..
T Consensus        73 FirLhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   73 FIRLHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence            9999999984    4566887777665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.36  E-value=0.00028  Score=62.88  Aligned_cols=206  Identities=17%  Similarity=0.123  Sum_probs=134.9

Q ss_pred             CchhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858            1 MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         1 ~~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      |..+.+|||.+|+....++-+..+...-++..-+..-.++|+.+.|=.++.++.+..|++ ........+.++..+|++.
T Consensus        92 l~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~  170 (400)
T COG3071          92 LLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYP  170 (400)
T ss_pred             HHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCch
Confidence            356889999999999999888777766666666777789999999999999999885553 3445666788899999999


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM---------  151 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~---------  151 (261)
                      .|.....+++++.|                          .++.++.-.-.+|.+.|++.+......+.-+         
T Consensus       171 aA~~~v~~ll~~~p--------------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~  224 (400)
T COG3071         171 AARENVDQLLEMTP--------------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA  224 (400)
T ss_pred             hHHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence            99999999988754                          2344444445555555555544444433322         


Q ss_pred             -----------------------------hCCC----chh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCC--------
Q 024858          152 -----------------------------IDPD----ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG--------  189 (261)
Q Consensus       152 -----------------------------~~P~----~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~--------  189 (261)
                                                   --|+    ++. ...++.-+...|++++|.++.++++...+.+        
T Consensus       225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~  304 (400)
T COG3071         225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPR  304 (400)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhh
Confidence                                         1222    223 3456777788899999999999998863211        


Q ss_pred             --CcchhhHHHHHHHHHHHHhcCCCCchhhhcccch-----hHHHHHHHHHHH
Q 024858          190 --CEDGRTRKRAEELLLELESKQPPPDLSDLLGLNL-----EDEFVNGLEEMV  235 (261)
Q Consensus       190 --~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~l  235 (261)
                        +.++....++  +-..+...+.++.....+|+..     ++.+.+.|+..+
T Consensus       305 l~~~d~~~l~k~--~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl  355 (400)
T COG3071         305 LRPGDPEPLIKA--AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL  355 (400)
T ss_pred             cCCCCchHHHHH--HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              1111111111  1122333344456666677655     466666666555

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.35  E-value=8.3e-06  Score=65.37  Aligned_cols=50  Identities=24%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             hhcCCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858          116 VSVRQETSRLLGNLAWAYMQKTN-----------FMAAEVVYQKAQMIDPDANK-ACNLGLC  165 (261)
Q Consensus       116 ~~l~p~~~~~~~~Lg~~~~~~g~-----------~~eA~~~~~~al~~~P~~~~-~~~L~~~  165 (261)
                      +.|+|+.++++.++|.+|..++.           |++|..+|++|+..+|+|.. ...|..+
T Consensus        62 L~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   62 LKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            44567888999999999987665           78899999999999999987 5555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.34  E-value=7.5e-06  Score=69.66  Aligned_cols=98  Identities=16%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      .+--+.+.|+|.+|++.|+.-++..|.+.                       -.+++++-||.++..+|+|++|...|..
T Consensus       147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-----------------------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~  203 (262)
T COG1729         147 AALDLYKSGDYAEAEQAFQAFIKKYPNST-----------------------YTPNAYYWLGESLYAQGDYEDAAYIFAR  203 (262)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-----------------------ccchhHHHHHHHHHhcccchHHHHHHHH
Confidence            44455788999999999999999755211                       1356889999999999999999999999


Q ss_pred             HHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858          149 AQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  190 (261)
Q Consensus       149 al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~  190 (261)
                      +.+-.|+++   + .+.||.++..+|+.++|...+++++.. +|+.
T Consensus       204 ~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~-YP~t  248 (262)
T COG1729         204 VVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR-YPGT  248 (262)
T ss_pred             HHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence            999999886   4 789999999999999999999999998 4444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.3e-05  Score=70.55  Aligned_cols=173  Identities=20%  Similarity=0.154  Sum_probs=124.4

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~-~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      +...|+..|+.+++-....+.... +.-.-+|.++...|+|++|...|+-+...+  +++..++..|+-++.-.|.|.+|
T Consensus        33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHH
Confidence            567899999999998887665544 444458999999999999999998877632  22345666789899999999999


Q ss_pred             HHHHHHHHHhhcchh--hhc-----CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           83 IEMLKRKLRLIYQGE--AFN-----GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        83 ~~~~~~al~l~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      ..+-.++-+- |-..  .++     +...+..     .|+-.+ ++..+-...|+.+....-.|.||+..|+++|.-+|+
T Consensus       111 ~~~~~ka~k~-pL~~RLlfhlahklndEk~~~-----~fh~~L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  111 KSIAEKAPKT-PLCIRLLFHLAHKLNDEKRIL-----TFHSSL-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHH-----HHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            9887775442 2110  000     1111111     111111 122334566777877778999999999999999998


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ... -.+++.||.++.=++-+.++..--+..
T Consensus       184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence            888 778999999999999998888877775

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.31  E-value=1.7e-06  Score=50.04  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858          123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      +.++.++|.+|..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3579999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=9.6e-05  Score=62.71  Aligned_cols=154  Identities=18%  Similarity=0.140  Sum_probs=94.2

Q ss_pred             HHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           14 VLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        14 ~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ..++..+.... .+.-.+..-|.++...|++++|..+......+.     ..+.+  ..++.+..+++-|+..+++...+
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----~~Al~--VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE-----AAALN--VQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444443333 333344455788999999999999887733331     11222  34557889999999999999988


Q ss_pred             hcch------hhh-c---CcchHHHhhchhhhh----h-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           93 IYQG------EAF-N---GKPTKTARSHGKKFQ----V-SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        93 ~~~~------~~~-~---~~~~~~~~~~~~~~~----~-~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      +...      .++ .   |.. + .   ...|.    + .--|-.+.+++..+.|++.+|+|+||...++.+|.-+|+++
T Consensus       167 ded~tLtQLA~awv~la~gge-k-~---qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp  241 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGE-K-I---QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP  241 (299)
T ss_pred             chHHHHHHHHHHHHHHhccch-h-h---hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence            5321      111 1   100 0 0   00111    0 11233456677777778888888888888888888888777


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHH
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVL  179 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~  179 (261)
                      + ..|+-.+-..+|...++..-+
T Consensus       242 etL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  242 ETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHH
Confidence            7 777777777777766665444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.30  E-value=5.2e-07  Score=52.63  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=28.3

Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHH
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR  176 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~  176 (261)
                      +|++|++++|+++. +++||.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            47889999999998 899999999999999886

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=9.8e-06  Score=66.04  Aligned_cols=95  Identities=22%  Similarity=0.139  Sum_probs=81.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |+-+++.|+|++|..-|..||++.|+...      +               .-.-.+.|-|.++..++.++.|+.-..+|
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~------e---------------~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTST------E---------------ERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccH------H---------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            34447899999999999999999763210      0               01236789999999999999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++|.+.. ...-+.+|-++.+|++|+.-|++++..
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            999999998 777899999999999999999999997

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.28  E-value=0.00013  Score=61.79  Aligned_cols=179  Identities=15%  Similarity=0.100  Sum_probs=123.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHH---
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES-LDNVLIDLYKK---   75 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~---~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~-~~~~L~~ly~~---   75 (261)
                      .|..|++++|+..|++.....|.   ...+...++..+...+++++|+..+++.++++|.+++.. +..+.|..+..   
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence            46789999999999988876554   567788899999999999999999999999999743222 23334433332   


Q ss_pred             -----cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           76 -----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        76 -----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                           +.-..+|+..++..+...| +.-+.......    -..+.    -..+.-=..+|..|.+.|.+..|+.-+++++
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ryP-nS~Ya~dA~~~----i~~~~----d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~  194 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRYP-NSRYAPDAKAR----IVKLN----DALAGHEMAIARYYLKRGAYVAAINRFEEVL  194 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHCC-CCcchhhHHHH----HHHHH----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence                 3335677888888888654 22111000000    00000    0011223568999999999999999999999


Q ss_pred             hhCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc
Q 024858          151 MIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE  191 (261)
Q Consensus       151 ~~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~  191 (261)
                      +..|+...    +.-|..+|..+|-.++|... .+++..+.|++.
T Consensus       195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s~  238 (254)
T COG4105         195 ENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDSQ  238 (254)
T ss_pred             hccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCCc
Confidence            99887652    56789999999999999765 455555555544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.28  E-value=6.8e-07  Score=52.15  Aligned_cols=34  Identities=26%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHH
Q 024858           15 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE   48 (261)
Q Consensus        15 ~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~   48 (261)
                      +|++||+.+|+++.++++||.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999863

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.27  E-value=6.4e-05  Score=60.75  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=92.1

Q ss_pred             HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhc
Q 024858           39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV  118 (261)
Q Consensus        39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l  118 (261)
                      +.=+.+.+..-..+.+...|...+   ..-|++.+.+.||+.||...|++++.-..                        
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTvqn---r~rLa~al~elGr~~EA~~hy~qalsG~f------------------------  120 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTVQN---RYRLANALAELGRYHEAVPHYQQALSGIF------------------------  120 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhHHH---HHHHHHHHHHhhhhhhhHHHHHHHhcccc------------------------
Confidence            333333343334444555555211   23477888899999999999999987532                        


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch--h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       119 ~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                       -+++..+..++.+....+++.+|...+++..+.+|..-  + ...+|.+|..+|++.+|...++.++..
T Consensus       121 -A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         121 -AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             -CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence             13567889999999999999999999999999999754  4 677899999999999999999999996

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=1.7e-05  Score=64.72  Aligned_cols=105  Identities=22%  Similarity=0.145  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS---QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~---~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      ..+..-|.-+...|.|++|..-|..++.++|.-+   ..-++.+-+.+..+++.++.||..+-+++++.|          
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p----------  165 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP----------  165 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc----------
Confidence            4466689999999999999999999999999621   122334456778999999999999999999864          


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                      ....++...+.+|.++..|++|+.-|++.++.+|....
T Consensus       166 ----------------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  166 ----------------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             ----------------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence                            23457778899999999999999999999999998754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.26  E-value=4.2e-05  Score=58.28  Aligned_cols=88  Identities=19%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHcCCHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ..|+++.|++.|.++|.+-|..++++++-+..+.-+|+.++|.+-+++++.+..+.  .....+.--|.+|..+|+.+.|
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A  134 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA  134 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence            45899999999999999999999999999999999999999999999999876542  1122334457789999999999


Q ss_pred             HHHHHHHHHh
Q 024858           83 IEMLKRKLRL   92 (261)
Q Consensus        83 ~~~~~~al~l   92 (261)
                      -.-|+.+-++
T Consensus       135 R~DFe~AA~L  144 (175)
T KOG4555|consen  135 RADFEAAAQL  144 (175)
T ss_pred             HHhHHHHHHh
Confidence            9999988776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.22  E-value=9.7e-05  Score=68.96  Aligned_cols=155  Identities=20%  Similarity=0.204  Sum_probs=116.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH----------H--HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVM----------K--QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY   73 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~----------~--~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly   73 (261)
                      .||-+.++.+++++.+ .++.-..+..|..+.          .  .....++|.+++....+..|+.+  .+...-|.++
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~~  277 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFEGRLE  277 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence            5888999999999987 444333333222111          1  34567889999999999999953  3455689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ...|+.++|++.|++++....               .-+.+       ..-.++.+|+++.-+++|++|..+|.+.++.+
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~---------------~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQS---------------EWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchh---------------hHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            999999999999999886321               01111       12367889999999999999999999999987


Q ss_pred             CCchh--hhhHHHHHHHcCCH-------HHHHHHHHHHHhC
Q 024858          154 PDANK--ACNLGLCLIKRTRY-------NEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~~--~~~L~~~l~~~g~~-------~eA~~~~~~~l~~  185 (261)
                      .-+..  .+..|.|+...|+.       ++|...++++-..
T Consensus       336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            77665  55779999999999       8888888876664

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.20  E-value=4e-05  Score=74.88  Aligned_cols=180  Identities=14%  Similarity=0.050  Sum_probs=132.4

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---cCCH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK---CGKV   79 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~---~g~~   79 (261)
                      ++.+++++|++-..++++.+|++-.++..||..+...|. .++|.++|-.+.+++|++  ..++--|+++|.+   ...+
T Consensus        13 l~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn--lLAWkGL~nLye~~~dIl~l   90 (1238)
T KOG1127|consen   13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN--LLAWKGLGNLYERYNDILDL   90 (1238)
T ss_pred             HhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh--hHHHHHHHHHHHccchhhhh
Confidence            678999999999999999999999999999999999999 999999999999999994  3445558888876   5568


Q ss_pred             HHHHHHHHHHHHhhcchhhh-----c---CcchHH-------Hhhchhh-----hhhhcCCCcHHHHHHHHHHHHHcCCH
Q 024858           80 EEQIEMLKRKLRLIYQGEAF-----N---GKPTKT-------ARSHGKK-----FQVSVRQETSRLLGNLAWAYMQKTNF  139 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~-----~---~~~~~~-------~~~~~~~-----~~~~l~p~~~~~~~~Lg~~~~~~g~~  139 (261)
                      +++-.+|.+++.+.+..+..     .   +.....       ++.-++.     ...+.+|.-..++..|+.+...+..+
T Consensus        91 d~~~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~~k~~a~~rl~Qi~l~~~~w  170 (1238)
T KOG1127|consen   91 DRAAKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNPKKFWAFCRLGQIQLHQKKW  170 (1238)
T ss_pred             hHhHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCHHHHHhhCchHHHHhhhhhH
Confidence            99999999998876532210     0   000000       0000110     11233444556777889999888899


Q ss_pred             HHHHHHHHHHHhhCCCchh-hh-----hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          140 MAAEVVYQKAQMIDPDANK-AC-----NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       140 ~eA~~~~~~al~~~P~~~~-~~-----~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+-.....++--.|.+.. +-     ..+..|...|.+-.+...|.+.+..
T Consensus       171 ei~k~S~q~~lynq~~n~~l~D~irse~e~~ly~~~~m~l~~kkh~~~rik~  222 (1238)
T KOG1127|consen  171 EIAKQSLQHALYNQPTNSDLWDKIRSEAEGLLYQRLGMFLAAKKHYGRRIKL  222 (1238)
T ss_pred             HHHhcCHHHHHhcchhhhcchhhcchhHHHHHHHHhhhhHhhhhhHHHHHHH
Confidence            9999888888888887664 43     5677777777777777777665553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.16  E-value=0.00014  Score=66.60  Aligned_cols=140  Identities=17%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  112 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~  112 (261)
                      ||++..++|+.+|||+.++.+++.+|......+..+|...|...++|.++..++.+-=++.                   
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-------------------  325 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-------------------  325 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-------------------
Confidence            6666666666666666666666666542233445556666666666666665555521111                   


Q ss_pred             hhhhhcCCCcHHHHHHHHHHHHH-------------cC---CHHHHHHHHHHHHhhCCCchh-hhh---H---HHHHHHc
Q 024858          113 KFQVSVRQETSRLLGNLAWAYMQ-------------KT---NFMAAEVVYQKAQMIDPDANK-ACN---L---GLCLIKR  169 (261)
Q Consensus       113 ~~~~~l~p~~~~~~~~Lg~~~~~-------------~g---~~~eA~~~~~~al~~~P~~~~-~~~---L---~~~l~~~  169 (261)
                            .|+.+.+.++-+..-.+             .|   --..|.+..++|++.+|.-+. ...   |   -.-+.+.
T Consensus       326 ------lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkr  399 (539)
T PF04184_consen  326 ------LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKR  399 (539)
T ss_pred             ------CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCC
Confidence                  12223333332222211             11   123477899999999998886 321   1   2234555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858          170 TRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  205 (261)
Q Consensus       170 g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~  205 (261)
                      |+ .||+.+-.--+.       +.++.+.|.+.|..
T Consensus       400 GD-SEAiaYAf~hL~-------hWk~veGAL~lL~~  427 (539)
T PF04184_consen  400 GD-SEAIAYAFFHLQ-------HWKRVEGALNLLHC  427 (539)
T ss_pred             Cc-HHHHHHHHHHHH-------HHhcCHhHHHHHHH
Confidence            65 888877766555       34444445555543

The molecular function of this protein is uncertain.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=6.9e-05  Score=69.64  Aligned_cols=138  Identities=18%  Similarity=0.211  Sum_probs=97.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---------------------------C
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---------------------------C   57 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~---------------------------~   57 (261)
                      ..+..++|+..+.   ..++....+++.-|.++..+|+|++|.+.|+..++-                           .
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            4566777777776   456666778888999999999999999998876322                           2


Q ss_pred             C---chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHH
Q 024858           58 S---KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM  134 (261)
Q Consensus        58 P---~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~  134 (261)
                      |   .+.+. +.++.+-++...|+|.+|++.+++++++.-.  .+.         .++.-...+.-+...+...|+.++.
T Consensus       168 ~~v~e~sye-l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e--~l~---------~~d~~eEeie~el~~IrvQlayVlQ  235 (652)
T KOG2376|consen  168 PEVPEDSYE-LLYNTACILIENGKYNQAIELLEKALRICRE--KLE---------DEDTNEEEIEEELNPIRVQLAYVLQ  235 (652)
T ss_pred             cCCCcchHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--hhc---------ccccchhhHHHHHHHHHHHHHHHHH
Confidence            2   22233 3344788889999999999999999887310  000         0000000111122357889999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCch
Q 024858          135 QKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       135 ~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      .+|+..||...|...+..+|-+.
T Consensus       236 ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  236 LQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HhcchHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999998665

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.14  E-value=0.00011  Score=56.00  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858           32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  111 (261)
Q Consensus        32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~  111 (261)
                      .-|+.+...|+.++|++.|.+++.+.|.  ..+.+|+-+..|.-+|+.++|++-+++++++.-+       .++.     
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-------~trt-----  113 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGD-------QTRT-----  113 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-------cchH-----
Confidence            3455556666666666666666666665  2334555555666666666666666666665210       0000     


Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858          112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus       112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                                --.++...|.+|..+|+-+.|..-|..|-++....
T Consensus       114 ----------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  114 ----------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             ----------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence                      01244555666666666666666666655554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.11  E-value=0.00011  Score=57.20  Aligned_cols=108  Identities=25%  Similarity=0.277  Sum_probs=73.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch-HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT-KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .....|+.+.+++.+++++.+ ..|..+.+... .-.......+    ....-.++..++..+...|++++|+..+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~al~l-y~G~~l~~~~~~~W~~~~r~~l----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   15 AAARAGDPEEAIELLEEALAL-YRGDFLPDLDDEEWVEPERERL----RELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHTT-HHHHHHHHHHHHTT---SSTTGGGTTSTTHHHHHHHH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH-hCCCCCCCCCccHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            335678888888888888887 33332221000 0000000000    01123577889999999999999999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      ..+|.+.. +..|-.+|..+|+..+|+++|++...
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999 89999999999999999999998765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00078  Score=57.29  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  108 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~  108 (261)
                      +...++..+..-++.++-+.-..+.+...-...+..+...-+.+|..-|++++|.....+...+.-  .+.+..  -..+
T Consensus        74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~--~Al~Vq--I~lk  149 (299)
T KOG3081|consen   74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA--AALNVQ--ILLK  149 (299)
T ss_pred             HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH--HHHHHH--HHHH
Confidence            444555555555555555544443333222222333455567899999999999999888554421  111100  0000


Q ss_pred             hch-----hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHH
Q 024858          109 SHG-----KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV  178 (261)
Q Consensus       109 ~~~-----~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~  178 (261)
                      .|.     +.+.....-+...++..|+.+|..    .+.+.+|.-+|++.-+--|..+. ....+.|.+.+||++||..+
T Consensus       150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l  229 (299)
T KOG3081|consen  150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL  229 (299)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence            111     111112222344566778777743    46789999999998885555555 88999999999999999999


Q ss_pred             HHHHHhCC
Q 024858          179 LEDVLYGR  186 (261)
Q Consensus       179 ~~~~l~~~  186 (261)
                      ++.+|...
T Consensus       230 L~eaL~kd  237 (299)
T KOG3081|consen  230 LEEALDKD  237 (299)
T ss_pred             HHHHHhcc
Confidence            99999973

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.05  E-value=2.6e-05  Score=68.40  Aligned_cols=101  Identities=14%  Similarity=0.042  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  109 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~  109 (261)
                      +..-|.-|..+|+|+|||.+|.+.+.++|.++.  +..+-+..|.++.+|.-|+.-+..++.++.           .   
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV--~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-----------~---  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV--YHINRALAYLKQKSFAQAEEDCEAAIALDK-----------L---  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc--chhhHHHHHHHHHHHHHHHHhHHHHHHhhH-----------H---
Confidence            566799999999999999999999999997543  344467789999999999999999999842           0   


Q ss_pred             chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                  ...++...|.+-..+|+.+||-+-|+.+|++.|++..
T Consensus       164 ------------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  164 ------------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             ------------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence                        1247788899999999999999999999999999865

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.04  E-value=2.2e-05  Score=70.27  Aligned_cols=158  Identities=16%  Similarity=0.114  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---Cc-hhHHHHHHHHHHHHHHcC
Q 024858            8 DPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SK-QSQESLDNVLIDLYKKCG   77 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~---P~-~~~~~~~~~L~~ly~~~g   77 (261)
                      .++.|..+|..-+++-..      ...++-+||..|.-+|+|+.||..-+.-+.+.   .+ -+....+.+||++|.-.|
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence            356677777776654333      23456679999999999999998766543332   22 233455667999999999


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      +++.|++.|++.+.+.-              ..+...      .-+..-+.||..|.-..++.+||.++.+-|.+.-.-.
T Consensus       250 ~fe~A~ehYK~tl~LAi--------------elg~r~------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~  309 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAI--------------ELGNRT------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE  309 (639)
T ss_pred             ccHhHHHHHHHHHHHHH--------------Hhcchh------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988731              111110      0134567899999999999999999999887754221


Q ss_pred             ------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          158 ------K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       158 ------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                            . ...||+++...|..+.|+.+.+..+..
T Consensus       310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                  2 357999999999999999999988875

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.00016  Score=61.36  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  108 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~  108 (261)
                      ..+.+..+++..|.|.-...+++++++.+|.. ...+...|+.+-.+.|+.+-|..+++++-+...   ..++       
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---kL~~-------  247 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---KLDG-------  247 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---hhhc-------
Confidence            34457888899999999999999999999753 223556689999999999999999997654311   0010       


Q ss_pred             hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                         .+       ..--++.|.+.+|.-++++.+|...|.+.+..||.++. .+|-+.|++=.|+..+|++..+.++..
T Consensus       248 ---~q-------~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  248 ---LQ-------GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             ---cc-------hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               01       11237889999999999999999999999999999999 788999999999999999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.98  E-value=3.7e-05  Score=61.69  Aligned_cols=85  Identities=14%  Similarity=0.016  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD----------RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g----------~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~   78 (261)
                      ++.|.+.++.....+|.+++++.+-|.+|..+.          -+++||.-++.++.++|+..  .....+|+.|..++.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence            677889999999999999999999998886553          34567777888999999842  233446777765544


Q ss_pred             -----------HHHHHHHHHHHHHhhcc
Q 024858           79 -----------VEEQIEMLKRKLRLIYQ   95 (261)
Q Consensus        79 -----------~~eA~~~~~~al~l~~~   95 (261)
                                 |++|..+|++++...|.
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence                       56666666666666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.98  E-value=0.0024  Score=60.32  Aligned_cols=199  Identities=13%  Similarity=0.172  Sum_probs=144.1

Q ss_pred             chhhcCCHHHHHHHHHHHHH-cCCCh-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAIN-AGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLY   73 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~-~~p~~-----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly   73 (261)
                      |.+.+|+..+-+.-|..|++ .+|..     ...|..+|.+|-..|+.+.|..+++++.+..-.  +.-...+..-|..=
T Consensus       356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE  435 (835)
T KOG2047|consen  356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME  435 (835)
T ss_pred             hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence            55778888888888888885 66653     455778899999999999999999999886432  11123344456666


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhh---hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEA---FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~---~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .+..+++.|..+.++++.. |.+..   +.+...-..+-|          ....+|..++......|-++.-...|.+.+
T Consensus       436 lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlh----------rSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  436 LRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLH----------RSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHH----------HhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            7888899999999988876 43311   222111111111          235689999999999999999999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCc--------------chhhHHHHHHHHHHHHhcCC
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG-RIPGCE--------------DGRTRKRAEELLLELESKQP  211 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~-~~~~~~--------------~~~~~~~a~~~l~~l~~~~~  211 (261)
                      .+.--.+. ..|.|..+.+..-++++-++|++-+.. .+|+.-              .....++++.++..+...-|
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            99998898 899999999999999999999998885 233321              12445677777776654333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.7e-05  Score=66.26  Aligned_cols=90  Identities=19%  Similarity=0.199  Sum_probs=79.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |+-|..-.+|++||..|-+++.++|                          ..+..+.|-+.+|++..+++....--++|
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP--------------------------~~~~Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINP--------------------------TVASYYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCC--------------------------CcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            3445667899999999999998864                          44567889999999999999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++|+... ++.||.++.....|++|+.++.++...
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999999998 999999999999999999999999653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.96  E-value=1.7e-05  Score=69.56  Aligned_cols=179  Identities=12%  Similarity=-0.032  Sum_probs=126.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.+|.+++|+.+|.+++..+|.++-.+.+-+..|..++++..|..-++.++.++-.  +.-.+.--+..-...|...||.
T Consensus       108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~~EAK  185 (536)
T KOG4648|consen  108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNNMEAK  185 (536)
T ss_pred             hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhHHHHH
Confidence            46799999999999999999999999999999999999999999999999998765  3333333445556789999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-------cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-------TSRLL--GNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-------~~~~~--~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      +-++.+|++.|...-+.-....+.....+.+...-.|.       ...++  -.-|..+...|.++-++..|.+-...+-
T Consensus       186 kD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~  265 (536)
T KOG4648|consen  186 KDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATID  265 (536)
T ss_pred             HhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccC
Confidence            99999999966422111000000000000010111111       11111  2346677888999999999988887777


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.. ..+ +..+.+..++++++.-.-++...
T Consensus       266 ~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~  296 (536)
T KOG4648|consen  266 DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP  296 (536)
T ss_pred             ccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence            7776 556 88899999999999888777664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=0.00047  Score=58.62  Aligned_cols=157  Identities=14%  Similarity=0.058  Sum_probs=116.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHcCC
Q 024858            4 LVQKDPEAAIVLFWKAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~-p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~~~~~~~~~~L~~ly~~~g~   78 (261)
                      +--|.+.-...++.++++.+ |..+.....||.+-.|.|+.+-|..+++.+-+    ++.......++.+.+.+|.-+++
T Consensus       188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn  267 (366)
T KOG2796|consen  188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN  267 (366)
T ss_pred             hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence            34566777788999999877 56677778899999999999999999985543    33323344566667889999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-  157 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-  157 (261)
                      +.+|...|.+.+..++                          .++.+.+|-+.|++-.|+..+|++..+.++.+.|... 
T Consensus       268 ~a~a~r~~~~i~~~D~--------------------------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  268 FAEAHRFFTEILRMDP--------------------------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             hHHHHHHHhhccccCC--------------------------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            9999999999887643                          3556778999999999999999999999999999865 


Q ss_pred             --h-hhhHHHHHH-HcCCHHHHHHHHHHHHhCC
Q 024858          158 --K-ACNLGLCLI-KRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       158 --~-~~~L~~~l~-~~g~~~eA~~~~~~~l~~~  186 (261)
                        . .+||...|. .--+.-+-......|+...
T Consensus       322 ~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~  354 (366)
T KOG2796|consen  322 HESVLFNLTTMYELEYSRSMQKKQALLEAVAGK  354 (366)
T ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc
Confidence              2 456655432 1123333334455566653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.94  E-value=1.7e-05  Score=45.74  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      +++..+|.+|..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999964

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0011  Score=55.41  Aligned_cols=142  Identities=19%  Similarity=0.183  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCc-hhHHHHHHHHHHHHHHcCCHHHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSK-QSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~-~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+++|..+|.+|              |.+|.-.+.+..|-.+|.++..    .+.. ++ .+-+...+++| +.++..+|
T Consensus        29 k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDa-at~YveA~~cy-kk~~~~eA   92 (288)
T KOG1586|consen   29 KYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA-ATTYVEAANCY-KKVDPEEA   92 (288)
T ss_pred             chHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHh-hccChHHH
Confidence            456666666665              3344444455555555444422    2222 11 11222234444 45599999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCch----
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDPDAN----  157 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~-g~~~eA~~~~~~al~~~P~~~----  157 (261)
                      +.++++++++..          ..+     .|..     -+.-+..+|.+|..- .+++.|+.+|++|-+......    
T Consensus        93 v~cL~~aieIyt----------~~G-----rf~~-----aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   93 VNCLEKAIEIYT----------DMG-----RFTM-----AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHHH----------hhh-----HHHH-----HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            999999999842          111     1100     123466799999665 999999999999988654332    


Q ss_pred             --h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          158 --K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       158 --~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                        . ....+..-...|+|.+|+.+|+++...
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1 233466667779999999999998875

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.92  E-value=0.0023  Score=54.25  Aligned_cols=137  Identities=19%  Similarity=0.174  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      .++-|.+-|....+.|++++|+..|+++...+|..+ .......++-.+.+.|++++|+...++-+++.|..        
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~--------  104 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH--------  104 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--------
Confidence            456688899999999999999999999999999632 23345668889999999999999999999986521        


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCCCchh------------------
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYM--------QKTNFMAAEVVYQKAQMIDPDANK------------------  158 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~--------~~g~~~eA~~~~~~al~~~P~~~~------------------  158 (261)
                                     |+-+-+++..|.++.        .+.-..+|+..++..+...|++.-                  
T Consensus       105 ---------------~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105         105 ---------------PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             ---------------CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence                           223335555555553        344457899999999999998641                  


Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          159 ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      -+.+|..|.+.|.+..|+.-++.++..
T Consensus       170 Em~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         170 EMAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            135799999999999999999999997

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=0.002  Score=59.03  Aligned_cols=154  Identities=14%  Similarity=0.055  Sum_probs=126.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDR----VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~----~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~   78 (261)
                      .+..+|.+.+...|+..|.+=|.    .+..|..-|...+.+.+...|.+++-.++..+|.+-   +....+.+=.+.+.
T Consensus       376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K---lFk~YIelElqL~e  452 (677)
T KOG1915|consen  376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK---LFKGYIELELQLRE  452 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh---HHHHHHHHHHHHhh
Confidence            45678999999999999998886    567777788888999999999999999999999842   33334555678899


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-h
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-N  157 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-~  157 (261)
                      +|..-.+|++-|+-.                          |++..+|...|..-..+|+.+.|...|.-|+....-+ +
T Consensus       453 fDRcRkLYEkfle~~--------------------------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp  506 (677)
T KOG1915|consen  453 FDRCRKLYEKFLEFS--------------------------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP  506 (677)
T ss_pred             HHHHHHHHHHHHhcC--------------------------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence            999999999988864                          4556789999999999999999999999999865433 3


Q ss_pred             h--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          158 K--ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       158 ~--~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .  |-..-..-...|.++.|..+|++.|..
T Consensus       507 ellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  507 ELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            3  445566777889999999999999987

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.86  E-value=0.00037  Score=63.96  Aligned_cols=136  Identities=16%  Similarity=0.151  Sum_probs=91.7

Q ss_pred             cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcC
Q 024858           40 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR  119 (261)
Q Consensus        40 ~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (261)
                      ..+.+.-|++-++++.++|+  ......+|+.  ....-..||+++|+++++....   ..++. .....++........
T Consensus       181 ERnp~aRIkaA~eALei~pd--CAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~---~lg~s-~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPD--CADAYILLAE--EEASTIVEAEELLRQAVKAGEA---SLGKS-QFLQHHGHFWEAWHR  252 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhh--hhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH---hhchh-hhhhcccchhhhhhc
Confidence            34556677888999999998  3345555652  2345589999999999987421   11100 000111111000000


Q ss_pred             CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-h-h-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          120 QE---TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-N-K-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       120 p~---~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~-~-~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                      .+   ..-+...||.|..++|+.+||++.|+..++..|.. . . +.||..+|..+++|.++..++.+--
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            11   12355789999999999999999999999988853 3 4 7899999999999999998888743

The molecular function of this protein is uncertain.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.00025  Score=62.62  Aligned_cols=157  Identities=18%  Similarity=0.133  Sum_probs=109.3

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      ....+|.-||.+++-...++-.. ...+...++.+|...|+|++|...|.-+..-..                       
T Consensus        33 ls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-----------------------   88 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-----------------------   88 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-----------------------
Confidence            34578999999998887766542 124555689999999999999999998766321                       


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCC------------Cchh-hhhHHHHHHHcC
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM--------------IDP------------DANK-ACNLGLCLIKRT  170 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~--------------~~P------------~~~~-~~~L~~~l~~~g  170 (261)
                         -+.+++.||+.++.-.|.|.||...-.++-+              ++.            |... ...|+.+....-
T Consensus        89 ---~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~  165 (557)
T KOG3785|consen   89 ---APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM  165 (557)
T ss_pred             ---CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence               1345788999999999999999887665422              110            1112 345667777778


Q ss_pred             CHHHHHHHHHHHHhCCCCCC----------cchhhHHHHHHHHHHHHhcCCCCchhhhccc
Q 024858          171 RYNEARSVLEDVLYGRIPGC----------EDGRTRKRAEELLLELESKQPPPDLSDLLGL  221 (261)
Q Consensus       171 ~~~eA~~~~~~~l~~~~~~~----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  221 (261)
                      .|.||+.+|++++..++.-.          -...-++...++++-...+.|++....++-.
T Consensus       166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka  226 (557)
T KOG3785|consen  166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA  226 (557)
T ss_pred             HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999742100          0234455677788877777777666555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0012  Score=53.67  Aligned_cols=116  Identities=19%  Similarity=0.122  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcH
Q 024858           45 EAIEAIKSFRGLCSKQSQES-LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS  123 (261)
Q Consensus        45 eAi~~~~~~~~~~P~~~~~~-~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~  123 (261)
                      +.+...+++...+|...+.. ....++..+...|++++|+..++.++.. +.++               .+.       +
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De---------------~lk-------~  126 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDE---------------NLK-------A  126 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhH---------------HHH-------H
Confidence            55555666666665532222 2355788899999999999999999875 2111               000       1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      -+-.+||.+..++|.+++|+..+....  +++...  ...-|.++...|+.++|...|++++..
T Consensus       127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            245689999999999999999887642  233333  234599999999999999999999996

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.78  E-value=4.6e-05  Score=46.94  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI   70 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~   70 (261)
                      |.++..+|.+|..+|++++|++.|+++++.+|+++  .+...|+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~--~a~~~La   42 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP--EAWRALA   42 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH--HHHHHhh
Confidence            35788899999999999999999999999999854  3444454

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.77  E-value=0.00063  Score=66.09  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=103.0

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      -.+++.+|.....+.++..|+...+...-|.++.++|+.+||..+++..-...|++ ...+ -++-.+|..+|++++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tL-q~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTL-QFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHH-HHHHHHHHHHhhhhHHHH
Confidence            35678899999999999999999999999999999999999998887776666663 3334 458899999999999999


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh--hhhH
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNL  162 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--~~~L  162 (261)
                      +|++++..+|                          + .+.+..+=.+|.+-+.|.+=-++--+..+.-|.++.  |.-+
T Consensus        99 ~Ye~~~~~~P--------------------------~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~  151 (932)
T KOG2053|consen   99 LYERANQKYP--------------------------S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI  151 (932)
T ss_pred             HHHHHHhhCC--------------------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence            9999998765                          2 234555555666666666544444444456777775  5555


Q ss_pred             HHHHHHcCC
Q 024858          163 GLCLIKRTR  171 (261)
Q Consensus       163 ~~~l~~~g~  171 (261)
                      ...+.....
T Consensus       152 Slilqs~~~  160 (932)
T KOG2053|consen  152 SLILQSIFS  160 (932)
T ss_pred             HHHHHhccC
Confidence            555544433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00015  Score=60.62  Aligned_cols=86  Identities=21%  Similarity=0.162  Sum_probs=78.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      ..+.++.|+..|.+||..+|..+..+.+-+.++.+.++++.+..-.++++.+.|+.  .-...+||........|++||.
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI~   99 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAIK   99 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHHH
Confidence            45679999999999999999999999999999999999999999999999999983  3456678888899999999999


Q ss_pred             HHHHHHHh
Q 024858           85 MLKRKLRL   92 (261)
Q Consensus        85 ~~~~al~l   92 (261)
                      .+.++..+
T Consensus       100 ~Lqra~sl  107 (284)
T KOG4642|consen  100 VLQRAYSL  107 (284)
T ss_pred             HHHHHHHH
Confidence            99999766

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0018  Score=54.58  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQSQESLDNVLIDLY   73 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~~~~~~~~~~L~~ly   73 (261)
                      ..+++++|...+.+|++...++.      .++-..+.+......+.|++.+|+++..+.     |+-+...+.. -+.+ 
T Consensus        43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK-Aak~-  120 (308)
T KOG1585|consen   43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK-AAKA-  120 (308)
T ss_pred             hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHH-HHHH-
Confidence            34677788888888885444433      334457777888888899999988887654     3311111111 2222 


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      .+.-+.++|+++|++++.+-..+.          +.+-          --+.+...+.+|.+..+++||...+.+-..+.
T Consensus       121 lenv~Pd~AlqlYqralavve~~d----------r~~m----------a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  121 LENVKPDDALQLYQRALAVVEEDD----------RDQM----------AFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             hhcCCHHHHHHHHHHHHHHHhccc----------hHHH----------HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence            566788899999999888742110          0000          12356778999999999999998888755432


Q ss_pred             ------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 ------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 ------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                            |+.-. ......++.-..+|..|...|+..-+.
T Consensus       181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence                  22222 344556666677999999999986664

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00055  Score=57.65  Aligned_cols=107  Identities=13%  Similarity=0.057  Sum_probs=82.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      |+=+.+.|+|+||+..|+.|+..-.. -        ..+..+.... ++++.-....+.|...|+...|+|-|+++....
T Consensus       185 GN~lfk~~~ykEA~~~YreAi~~l~~-L--------~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  185 GNRLFKLGRYKEASSKYREAIICLRN-L--------QLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHH-H--------HhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            44457899999999999999886210 0        0000000000 122222345788999999999999999999999


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|..+|+|.. ++.-|.+.....+..||..-+.++|..
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            9999999999 889999999999999999999999997

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=8.2e-05  Score=42.71  Aligned_cols=33  Identities=27%  Similarity=0.159  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   59 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~   59 (261)
                      ++++..+|.++..+|++++|++.+++++.++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            356777788888888888888888888877776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.70  E-value=0.0035  Score=63.72  Aligned_cols=146  Identities=12%  Similarity=0.060  Sum_probs=95.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCchhHH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           13 IVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSKQSQE--SLDNVLIDLYKKCGKVEEQIEMLKRK   89 (261)
Q Consensus        13 ~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~-~~P~~~~~--~~~~~L~~ly~~~g~~~eA~~~~~~a   89 (261)
                      .+-|.+.+..+|+..-.|-.--.-+++.++.++|.+..++++. +++..-.+  .++..+-++-..-|.-+.-.+.|++|
T Consensus      1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence            3456667777888777776655666788888888888888776 55542111  22222334444556566666777776


Q ss_pred             HHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858           90 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  168 (261)
Q Consensus        90 l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~  168 (261)
                      -+...                           .-.++..|..+|...+.+++|.++|+..++-.-+... |..+|..+++
T Consensus      1524 cqycd---------------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1524 CQYCD---------------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred             HHhcc---------------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            66532                           1235667777777777777777777777776665555 7777777777


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 024858          169 RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       169 ~g~~~eA~~~~~~~l~~  185 (261)
                      +.+-++|..++.+++..
T Consensus      1577 ~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKS 1593 (1710)
T ss_pred             ccHHHHHHHHHHHHHhh
Confidence            77777777777777775

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=9.1e-05  Score=42.69  Aligned_cols=32  Identities=25%  Similarity=0.166  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   59 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~   59 (261)
                      .++.++|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.69  E-value=0.00089  Score=52.12  Aligned_cols=86  Identities=23%  Similarity=0.229  Sum_probs=67.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCC----------------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH
Q 024858            5 VQKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ   62 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~----------------------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~   62 (261)
                      ..++.+.++..+++++.+-.+                      ...++..++..+...|++++|+..+++++..+|-  +
T Consensus        18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--~   95 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY--D   95 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---
T ss_pred             HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--C
Confidence            457888899999999963211                      2344556888889999999999999999999998  4


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      +.++..+..+|...|++.+|+..|++..+.
T Consensus        96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   96 EEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            567777899999999999999999998765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0028  Score=54.75  Aligned_cols=153  Identities=22%  Similarity=0.121  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      -.+.-...+.-..+.|++.+|..++..++...|++.  .+...++.+|...|+.++|..++...-.- ..+.        
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~--------  201 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDK--------  201 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHhCccc-chhh--------
Confidence            334445567778899999999999999999999853  35556899999999999999888773211 0000        


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                        +.++           ..+..   ..+.+.....+. ..+.+.+..+|++.. .+.|+..|...||.++|.+.+-.++.
T Consensus       202 --~~~~-----------l~a~i---~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         202 --AAHG-----------LQAQI---ELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             --HHHH-----------HHHHH---HHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              0000           00111   122233333322 234566778999998 99999999999999999999999888


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHH
Q 024858          185 GRIPGCEDGRTRKRAEELLLELE  207 (261)
Q Consensus       185 ~~~~~~~~~~~~~~a~~~l~~l~  207 (261)
                      .+. +..+.....+..+++..++
T Consensus       265 ~d~-~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         265 RDR-GFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             hcc-cccCcHHHHHHHHHHHhcC
Confidence            631 2223333334555555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.65  E-value=0.0047  Score=62.86  Aligned_cols=176  Identities=16%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             hhhcCCHHHHHHHHHHHHH-cCCChH-------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAIN-AGDRVD-------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK   74 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~-~~p~~~-------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~   74 (261)
                      +|..++.++|....++|+. +++.-.       -|+.||-+.|   |.-+.-.+.|+++.+.+..  . ..+..|..+|.
T Consensus      1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~--~-~V~~~L~~iy~ 1541 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA--Y-TVHLKLLGIYE 1541 (1710)
T ss_pred             HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch--H-HHHHHHHHHHH
Confidence            4667889999999999996 655432       2333333333   4445556778888877643  2 35566788889


Q ss_pred             HcCCHHHHHHHHHHHHHhhcchh--hh-------cCcchHHHhhchhhhhhhcCC--CcHHHHHHHHHHHHHcCCHHHHH
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGE--AF-------NGKPTKTARSHGKKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~--~~-------~~~~~~~~~~~~~~~~~~l~p--~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      +.+++++|.++|+..++..-+..  |.       ..+..+.++..-... +..-|  ++-+...--+..-++.|+.+.+.
T Consensus      1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA-L~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA-LKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred             HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH-HhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence            99999999999998888632100  00       000000000000000 01111  13334444455555555555555


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..|+-.|.-+|.-.+ |.-+...-+++|+.+-+..+|++++..
T Consensus      1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            555555555555555 555555555555555666666665554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.003  Score=54.57  Aligned_cols=152  Identities=15%  Similarity=0.018  Sum_probs=105.7

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +..|++.+|...|..++...|++.++...|+.+|...|+.++|..++...    |.+.......         + ....+
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~---------~-l~a~i  210 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAH---------G-LQAQI  210 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHH---------H-HHHHH
Confidence            45789999999999999999999999999999999999999998887553    4321111110         1 12224


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh---hh
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK---AC  160 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---~~  160 (261)
                      +.+.++-.. |....             -.-.+.-+|++.++.+.|+..|...|+.++|+..+-..+..+-...+   .-
T Consensus       211 ~ll~qaa~~-~~~~~-------------l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk  276 (304)
T COG3118         211 ELLEQAAAT-PEIQD-------------LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK  276 (304)
T ss_pred             HHHHHHhcC-CCHHH-------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence            455554333 10000             00113456889999999999999999999999999999988754432   44


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHH
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                      .|-.++...|..+.+...|++-+
T Consensus       277 ~lle~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         277 TLLELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            56667766776555666665544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.60  E-value=0.01  Score=54.54  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=105.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE   84 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~   84 (261)
                      .+++...|...|++|+..+-.+...|..-+-.-........|.....+++.+-|.-  ..++.-...+=-..|+...|-+
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV--dqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV--DQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH--HHHHHHHHHHHHHhcccHHHHH
Confidence            45677788888888888777777777777777777788888888888888888862  1122112222345688888888


Q ss_pred             HHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHH
Q 024858           85 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGL  164 (261)
Q Consensus        85 ~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~  164 (261)
                      +|++-+...|+                           ..+|...-..-.+....+-|...|++-+-..|+-..|...+.
T Consensus       163 iferW~~w~P~---------------------------eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar  215 (677)
T KOG1915|consen  163 IFERWMEWEPD---------------------------EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR  215 (677)
T ss_pred             HHHHHHcCCCc---------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH
Confidence            88888777552                           235555555555666777777777777777777666777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhC
Q 024858          165 CLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       165 ~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .-.+.|...-|..+|++++..
T Consensus       216 FE~k~g~~~~aR~VyerAie~  236 (677)
T KOG1915|consen  216 FEEKHGNVALARSVYERAIEF  236 (677)
T ss_pred             HHHhcCcHHHHHHHHHHHHHH
Confidence            777777777777777777763

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.59  E-value=0.00012  Score=43.01  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858          125 LLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus       125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      ++.+||.+|.++|++++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4688999999999999999999996654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.0041  Score=50.66  Aligned_cols=99  Identities=12%  Similarity=0.045  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858           32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH  110 (261)
Q Consensus        32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~  110 (261)
                      .++......|++++|+..++.++..--+. -...+..-|+.+..++|++|+|...+.....-                  
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~------------------  155 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE------------------  155 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc------------------
Confidence            36788899999999999999988654331 11223345889999999999999877763321                  


Q ss_pred             hhhhhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          111 GKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       111 ~~~~~~~l~p~~~~-~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                ++.. .-...|.++..+|+.++|...|.+++..+++...
T Consensus       156 ----------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         156 ----------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             ----------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence                      1122 2345699999999999999999999999877664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.00055  Score=56.69  Aligned_cols=75  Identities=23%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858          116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  190 (261)
Q Consensus       116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~  190 (261)
                      +.|.|+.|++.+.||..+...|+|+.|.+.|..++++||.+.- +.|-|..+.=-||+.-|.+-+.+.-..++.+|
T Consensus        92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            4556777888888888888888888888888888888888887 77888888888888888877777666644333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.54  E-value=0.00016  Score=41.09  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      ++++++|.+|..+|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367899999999999999999999999999975

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0024  Score=55.40  Aligned_cols=163  Identities=15%  Similarity=0.010  Sum_probs=97.2

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC----cchHHHhhchhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG----KPTKTARSHGKK  113 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~----~~~~~~~~~~~~  113 (261)
                      +...||.+||+++.......|.+  ......||.+|....+|.+|.++|++.-.+.|.-.-+.-    ...+.+..-...
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~--rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRS--RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            66789999999999999999963  234456999999999999999999998777653221110    000000000000


Q ss_pred             hhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCC--Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          114 FQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQMIDP--DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       114 ~~~~l~p~~~~~~----~~Lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      -.+.+-.+++..+    .--+.+..+.+++.-+..    .++.-|  +... ..|.|-.+.+.|++++|.+-|+.++..+
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHH----HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence            0001111111111    112334444455444433    333456  3345 7899999999999999999999999964


Q ss_pred             CCCCc----------chhhHHHHHHHHHHH
Q 024858          187 IPGCE----------DGRTRKRAEELLLEL  206 (261)
Q Consensus       187 ~~~~~----------~~~~~~~a~~~l~~l  206 (261)
                      ...|.          ..+.+..|.....++
T Consensus       175 GyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  175 GYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             CCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33331          234455565555554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.50  E-value=0.0093  Score=51.87  Aligned_cols=146  Identities=16%  Similarity=0.073  Sum_probs=87.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC----
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG----   77 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g----   77 (261)
                      ..+..+|..+|+.+  .+..++.+.++||.++..    ..+..+|...|+++...+-..+ ......|+..|..-+    
T Consensus        90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~  166 (292)
T COG0790          90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALA  166 (292)
T ss_pred             cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhc
Confidence            34556666666633  334555666666666655    3366666666666666543321 111233444443321    


Q ss_pred             ---CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 024858           78 ---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQ  150 (261)
Q Consensus        78 ---~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al  150 (261)
                         +...|...|+++-..                            .++++..+||.+|..    ..++.+|...|.+|.
T Consensus       167 ~~~~~~~A~~~~~~aa~~----------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa  218 (292)
T COG0790         167 VAYDDKKALYLYRKAAEL----------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA  218 (292)
T ss_pred             ccHHHHhHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence               112344444443332                            256788999999855    458999999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcC---------------CHHHHHHHHHHHHhC
Q 024858          151 MIDPDANK-ACNLGLCLIKRT---------------RYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g---------------~~~eA~~~~~~~l~~  185 (261)
                      +...  .. .++++ ++...|               +...|...+.++-..
T Consensus       219 ~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         219 EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            9877  55 77888 666666               666666666665554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0042  Score=52.40  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-hHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQE---SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~~~---~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      .+.+..-++.+...+++++|-..+.++.+-.-++ ++.   -..--.+.+..+...+.|++.+|+++..+.-        
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~--------  102 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV--------  102 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------
Confidence            3445666888999999999999999988544331 000   1112234566888999999999999988731        


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHH
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA  175 (261)
                            .+|       .|+.+..-..-+.=....-++++|+.+|++++.+--.+.      + ....+++|.+..+|+||
T Consensus       103 ------E~G-------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  103 ------ECG-------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             ------HhC-------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence                  111       122222222333334566799999999999998754332      2 34678999999999999


Q ss_pred             HHHHHHHHh
Q 024858          176 RSVLEDVLY  184 (261)
Q Consensus       176 ~~~~~~~l~  184 (261)
                      ...+.+-..
T Consensus       170 a~a~lKe~~  178 (308)
T KOG1585|consen  170 ATAFLKEGV  178 (308)
T ss_pred             HHHHHHhhh
Confidence            988876433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.46  E-value=0.013  Score=52.55  Aligned_cols=70  Identities=16%  Similarity=0.049  Sum_probs=61.0

Q ss_pred             hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHH-HcCCHHHHHHHHHHHHhC
Q 024858          116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLI-KRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~-~~g~~~eA~~~~~~~l~~  185 (261)
                      ..++||+.+.....+..-..-|++..|...-+.+....|.-..+.-|+.+-. +.|+-.++..++-+++..
T Consensus       322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            4678999999999999999999999999999999999998877666666554 459999999999999986

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.0056  Score=53.91  Aligned_cols=57  Identities=9%  Similarity=-0.046  Sum_probs=28.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      -+.++-..|.+.+|....++.+.-.|.+  ......--+++.-.|+.+.-...+++.+-
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtD--lla~kfsh~a~fy~G~~~~~k~ai~kIip  165 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTD--LLAVKFSHDAHFYNGNQIGKKNAIEKIIP  165 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchh--hhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence            3444455566666655556666655553  11222233444555555555555555444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.37  E-value=0.033  Score=50.09  Aligned_cols=159  Identities=15%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSA-LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~a-l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      -+++|+++.|..-|+ +.-.+|+.-.. +..|-.--...|..+-|+.+-+.+....|.-++. +..+| .-....|+++.
T Consensus       130 al~eG~~~~Ar~kfe-AMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA-~~AtL-e~r~~~gdWd~  206 (531)
T COG3898         130 ALLEGDYEDARKKFE-AMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA-ARATL-EARCAAGDWDG  206 (531)
T ss_pred             HHhcCchHHHHHHHH-HHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH-HHHHH-HHHHhcCChHH
Confidence            367899999999998 44446654322 2223333356799999999999999998874333 22333 33478899999


Q ss_pred             HHHHHHHHHHhh--cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858           82 QIEMLKRKLRLI--YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        82 A~~~~~~al~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-  158 (261)
                      |+++........  .++.+-         ..           -+-.+..-+.... .-+...|...-.+++++.|+... 
T Consensus       207 AlkLvd~~~~~~vie~~~ae---------R~-----------rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPa  265 (531)
T COG3898         207 ALKLVDAQRAAKVIEKDVAE---------RS-----------RAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPA  265 (531)
T ss_pred             HHHHHHHHHHHHhhchhhHH---------HH-----------HHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchH
Confidence            999888766541  111000         00           0001111222222 23466667777777777777776 


Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          159 ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ...-+..|.+.|+.-++..+++.+-..
T Consensus       266 av~AAralf~d~~~rKg~~ilE~aWK~  292 (531)
T COG3898         266 AVVAARALFRDGNLRKGSKILETAWKA  292 (531)
T ss_pred             HHHHHHHHHhccchhhhhhHHHHHHhc
Confidence            666677777777777777777766664

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.37  E-value=0.0017  Score=46.62  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      .+..+++++..+|++.++.+.+|..+...|++++|++.+-.+++.+|+.........+..+....|.-+.-..-|++-|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~   86 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA   86 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999999988632233445566677777887767777776543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.37  E-value=0.027  Score=50.81  Aligned_cols=130  Identities=16%  Similarity=0.208  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhcchhh
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----CSKQSQESLDNVLIDLYKK---CGKVEEQIEMLKRKLRLIYQGEA   98 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~----~P~~~~~~~~~~L~~ly~~---~g~~~eA~~~~~~al~l~~~~~~   98 (261)
                      .++.+.+|=..|....+|+.=|.+.+.+-.+    .++..  .+....|-.+-+   .|+.++|+..+..++....    
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~--~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~----  213 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQH--NIKFQYAFALNRRNKPGDREKALQILLPVLESDE----  213 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcch--HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC----
Confidence            3566778888899999999999999887666    22321  233334555666   8999999999999766421    


Q ss_pred             hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHc
Q 024858           99 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ---------KTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR  169 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~---------~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~  169 (261)
                                           +.+++++.-+|.+|..         ....++|+..|+++.+++|+.-.-.|++.++.-.
T Consensus       214 ---------------------~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~  272 (374)
T PF13281_consen  214 ---------------------NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA  272 (374)
T ss_pred             ---------------------CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence                                 2356778888888743         2347899999999999997666678888888888


Q ss_pred             CCHHHHHHHHHHH
Q 024858          170 TRYNEARSVLEDV  182 (261)
Q Consensus       170 g~~~eA~~~~~~~  182 (261)
                      |...+.....+++
T Consensus       273 g~~~~~~~el~~i  285 (374)
T PF13281_consen  273 GHDFETSEELRKI  285 (374)
T ss_pred             CCcccchHHHHHH
Confidence            8655555444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.36  E-value=0.0022  Score=56.89  Aligned_cols=142  Identities=14%  Similarity=0.079  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~--~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      .++..||..+..++.++++.+.++++.+...+  |+  ...+...|+.++-...++++|.-+..++.++-..   + + .
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s---~-~-l  197 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS---Y-G-L  197 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh---c-C-c
Confidence            34555777777777777777777777665332  11  1122345677777777777777777777776210   0 0 0


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---Cc---hh-hhhHHHHHHHcCCHHHHH
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP---DA---NK-ACNLGLCLIKRTRYNEAR  176 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P---~~---~~-~~~L~~~l~~~g~~~eA~  176 (261)
                       +   .....+       ..-+++.++.+|..+|+...|.++.+++.++.-   |.   +. ..-+|.+|...|+.+-|.
T Consensus       198 -~---d~~~ky-------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af  266 (518)
T KOG1941|consen  198 -K---DWSLKY-------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF  266 (518)
T ss_pred             -C---chhHHH-------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence             0   000000       123778999999999999999999999988642   22   23 457899999999999999


Q ss_pred             HHHHHHHhC
Q 024858          177 SVLEDVLYG  185 (261)
Q Consensus       177 ~~~~~~l~~  185 (261)
                      .-|+.+...
T Consensus       267 ~rYe~Am~~  275 (518)
T KOG1941|consen  267 RRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHH
Confidence            999988774

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.31  E-value=0.026  Score=53.67  Aligned_cols=156  Identities=18%  Similarity=0.169  Sum_probs=110.8

Q ss_pred             hhcCCHHHHHHHHHHHHHcC-C---ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----------hHH-----
Q 024858            4 LVQKDPEAAIVLFWKAINAG-D---RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----------SQE-----   63 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~-p---~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----------~~~-----   63 (261)
                      -..|+++.|...|.++.+.+ +   +.++.|.+-|..-....+++.|..+.+.+... |..           ++.     
T Consensus       398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrS  476 (835)
T KOG2047|consen  398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRS  476 (835)
T ss_pred             HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHh
Confidence            35789999999999999854 2   33677888888888899999999999988754 221           111     


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858           64 -SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  142 (261)
Q Consensus        64 -~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA  142 (261)
                       .++...+++-...|=++.-..+|++.+.+.-                          -.|.+..|.|..+....-+++|
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLri--------------------------aTPqii~NyAmfLEeh~yfees  530 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------------------------ATPQIIINYAMFLEEHKYFEES  530 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------------------------CCHHHHHHHHHHHHhhHHHHHH
Confidence             1235567777778888888888888888731                          1466778888888888888888


Q ss_pred             HHHHHHHHhhCCCc--hh-hhh-HHHHHHHc--CCHHHHHHHHHHHHhCC
Q 024858          143 EVVYQKAQMIDPDA--NK-ACN-LGLCLIKR--TRYNEARSVLEDVLYGR  186 (261)
Q Consensus       143 ~~~~~~al~~~P~~--~~-~~~-L~~~l~~~--g~~~eA~~~~~~~l~~~  186 (261)
                      .+.|++-+.+.|--  .+ |.. |..+-.+-  -+.+-|..+|+++|...
T Consensus       531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C  580 (835)
T KOG2047|consen  531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC  580 (835)
T ss_pred             HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence            88888888876432  24 542 33332232  36778888888888863

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.31  E-value=0.0074  Score=54.37  Aligned_cols=134  Identities=17%  Similarity=0.095  Sum_probs=91.2

Q ss_pred             cCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAI-NAGDRVDSALKDMAVVMKQ---------LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK   75 (261)
Q Consensus         6 ~~~~~~A~~~~~~al-~~~p~~~~al~~Lg~~~~~---------~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~   75 (261)
                      .||.++|+..+..++ ..++..++++-.+|.+|..         ....++||..|+++..+.|+.   ..+.+++.++..
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~  271 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLML  271 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHH
Confidence            799999999999955 5777889999999999843         235789999999999999872   245557788888


Q ss_pred             cCCHHHHHHHHHHHH-HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           76 CGKVEEQIEMLKRKL-RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        76 ~g~~~eA~~~~~~al-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .|...+...-.++.. +++.    +.+...    ...       +-++-+.+..++.+..-.|++++|++.+++++++.|
T Consensus       272 ~g~~~~~~~el~~i~~~l~~----llg~kg----~~~-------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  272 AGHDFETSEELRKIGVKLSS----LLGRKG----SLE-------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             cCCcccchHHHHHHHHHHHH----HHHhhc----ccc-------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence            887666654455433 2210    000000    000       001234556777888888888888888888888876


Q ss_pred             Cch
Q 024858          155 DAN  157 (261)
Q Consensus       155 ~~~  157 (261)
                      ...
T Consensus       337 ~~W  339 (374)
T PF13281_consen  337 PAW  339 (374)
T ss_pred             cch
Confidence            554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.27  E-value=0.0058  Score=45.85  Aligned_cols=94  Identities=18%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhh---cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           74 KKCGKVEEQIEMLKRKLRLI---YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~---~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .+-|-|++|...+++++++.   |+.++|.         |.. |       ++-.+..|+.++..+|+|+|++..-.++|
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFD---------h~G-F-------DA~chA~Ls~A~~~Lgry~e~L~sA~~aL   82 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFD---------HDG-F-------DAFCHAGLSGALAGLGRYDECLQSADRAL   82 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS------------HHH-H-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcc---------ccc-H-------HHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45689999999999999984   4333332         110 1       23367789999999999999998888888


Q ss_pred             h-------hCCCchh-h----hhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          151 M-------IDPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       151 ~-------~~P~~~~-~----~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      .       ++.|... |    ++-+.++...|+.+||+..|+.+-.
T Consensus        83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            5       5666665 6    4678999999999999999997665

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.26  E-value=0.0071  Score=56.55  Aligned_cols=125  Identities=17%  Similarity=-0.058  Sum_probs=98.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ...+.+.|..++....+.-|+..--+...|.++...|+.++|++.+++++.....  +.......-++..+.-+++|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            4667888999999999999998888888999999999999999999988854433  21222334577888899999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-------MAAEVVYQKAQMIDP  154 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~-------~eA~~~~~~al~~~P  154 (261)
                      ...+.+.++.+...                         ..-..+..|.|+...|+.       ++|...|+++-.+-.
T Consensus       325 ~~~f~~L~~~s~WS-------------------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  325 AEYFLRLLKESKWS-------------------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHhccccH-------------------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            99999988864210                         112345679999999999       899999998876554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>smart00028 TPR Tetratricopeptide repeats

Probab=97.26  E-value=0.00046  Score=37.78  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      .++.++|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.25  E-value=0.00071  Score=61.79  Aligned_cols=88  Identities=19%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      ..+-+.|+.|+..|-+++++.|                          +.+..+.|.+.++...+++..|+.-..+|+++
T Consensus        14 ~l~~~~fd~avdlysKaI~ldp--------------------------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDP--------------------------NCAIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCC--------------------------cceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            3577999999999999999853                          44556677888999999999999999999999


Q ss_pred             CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          153 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       153 ~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      +|.... ++.-|.+.+..+++.+|...|+.+....
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~  102 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA  102 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence            999998 7788999999999999999999999973

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.0068  Score=53.43  Aligned_cols=161  Identities=16%  Similarity=0.040  Sum_probs=105.6

Q ss_pred             HHHHHHcCCChHHHHH-HHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           16 FWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        16 ~~~al~~~p~~~~al~-~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ..+....+|...-+.. .+|.+....++..+-++.++++..-.-.  ++.+.... -+.++-..|++-+|...+++.|.-
T Consensus        54 a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~-~aai~~~~g~~h~a~~~wdklL~d  132 (491)
T KOG2610|consen   54 AEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHA-KAAILWGRGKHHEAAIEWDKLLDD  132 (491)
T ss_pred             HHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhh-hHHHhhccccccHHHHHHHHHHHh
Confidence            3444557787666643 4688888888877777777665321111  11122221 223446789999999999999986


Q ss_pred             hcchh-hh---------cCcchHHHhhchhh-hhhhcCC----Cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           93 IYQGE-AF---------NGKPTKTARSHGKK-FQVSVRQ----ET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        93 ~~~~~-~~---------~~~~~~~~~~~~~~-~~~~l~p----~~---~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .|.+- +.         +|+.      .+.. ....|-|    +.   .-++..++..+...|-|++|++.-+++++++|
T Consensus       133 ~PtDlla~kfsh~a~fy~G~~------~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~  206 (491)
T KOG2610|consen  133 YPTDLLAVKFSHDAHFYNGNQ------IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINR  206 (491)
T ss_pred             CchhhhhhhhhhhHHHhccch------hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCC
Confidence            55331 11         1110      0000 0011222    22   33566789999999999999999999999999


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                      .+.- ...++.++...||+.|+.+.+.+--
T Consensus       207 ~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  207 FDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             cchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            8886 7788999999999999999988643

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.17  E-value=0.0043  Score=51.53  Aligned_cols=105  Identities=14%  Similarity=0.009  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      .+..++.-|+.|-..|-..-|.--+.+++.+.|+.  ..+.|.||--+...|+|+.|.+.+...++++|           
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m--~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-----------  130 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM--PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-----------  130 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc--HHHHHHHHHHHHhcccchHHHHHhhhHhccCC-----------
Confidence            45556677888888888888888888999999994  35778899888999999999999999999864           


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                     ...-++.|.|..+.--|+|.-|..-+.+-.+-||+++-
T Consensus       131 ---------------~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         131 ---------------TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ---------------cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence                           23346778888888888888888888888888888874

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0021  Score=56.37  Aligned_cols=96  Identities=21%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      .--|+-|.+.++|..|+..|.+.|+..-++                       |+ ++-.+.|.+.+..-.|+|.-|+.-
T Consensus        85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------------------~dlnavLY~NRAAa~~~l~NyRs~l~D  141 (390)
T KOG0551|consen   85 KEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------------------PDLNAVLYTNRAAAQLYLGNYRSALND  141 (390)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------------------ccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            345778899999999999999999974211                       11 244788999999999999999999


Q ss_pred             HHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          146 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       146 ~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..+|+.++|++.. .+.=+.|+.++.++++|..+++..+..
T Consensus       142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  142 CSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999 888899999999999999999877664

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.13  E-value=0.0031  Score=55.97  Aligned_cols=132  Identities=18%  Similarity=0.130  Sum_probs=97.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhcCC----chhH----HHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQ----ESLDNV   68 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~------al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~----~~~~~~   68 (261)
                      ++--+.++++++.|++|++...++.+      ....||.++.+..++++|.-...++..+-.    ++++    .....-
T Consensus       132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh  211 (518)
T KOG1941|consen  132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH  211 (518)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence            44456789999999999986554433      355699999999999999988777665432    2211    122344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ++..|..+|+..+|.++.+++.++.              -.+++...      .+..+..+|.+|...|+.+.|..-|+.
T Consensus       212 maValR~~G~LgdA~e~C~Ea~kla--------------l~~Gdra~------~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  212 MAVALRLLGRLGDAMECCEEAMKLA--------------LQHGDRAL------QARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHH--------------HHhCChHH------HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence            6778899999999999999999873              12222211      345677899999999999999999999


Q ss_pred             HHhhCC
Q 024858          149 AQMIDP  154 (261)
Q Consensus       149 al~~~P  154 (261)
                      |....-
T Consensus       272 Am~~m~  277 (518)
T KOG1941|consen  272 AMGTMA  277 (518)
T ss_pred             HHHHHh
Confidence            987643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.006  Score=51.54  Aligned_cols=106  Identities=18%  Similarity=-0.007  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--------cCCchh--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRG--------LCSKQS--------QESLDNVLIDLYKKCGKVEEQIEMLKRKL   90 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--------~~P~~~--------~~~~~~~L~~ly~~~g~~~eA~~~~~~al   90 (261)
                      .++++.-|+-+..+|+|.||+..|+.++.        --|.++        ...+..+...++...|+|=++++.....|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            56788889999999999999999987753        235321        12234456778888999999999998888


Q ss_pred             HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           91 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      +..                          |.+..+++..|.+....-+..||.+-|.++|+++|.-.+
T Consensus       258 ~~~--------------------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHH--------------------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcC--------------------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            864                          345678999999999999999999999999999998765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.08  E-value=0.0013  Score=38.57  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      ..||.+|.++|++++|+++|+++|.+.
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            458999999999999999999988763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.05  E-value=0.0056  Score=59.75  Aligned_cols=114  Identities=14%  Similarity=0.154  Sum_probs=87.7

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      ...+++..|.+...+.++..|+-....+.  -|-.+.++|+.++|..+++. +..-                        
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r~gk~~ea~~~Le~-~~~~------------------------   72 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFRLGKGDEALKLLEA-LYGL------------------------   72 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHHhcCchhHHHHHhh-hccC------------------------
Confidence            35678999999999999999984333232  34566899999999966655 3321                        


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHH----HHHHHH
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE----ARSVLE  180 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~e----A~~~~~  180 (261)
                       .+++..++..+-.||..+|++++|..+|++++..+|. .. .+.+=++|.+-+.|.+    |++.|+
T Consensus        73 -~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK  138 (932)
T KOG2053|consen   73 -KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK  138 (932)
T ss_pred             -CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1345567888999999999999999999999999999 55 7788888888877654    555555

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.04  E-value=0.028  Score=48.95  Aligned_cols=81  Identities=12%  Similarity=0.070  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEE-AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK   87 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~e-Ai~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~   87 (261)
                      .+.|...|.+|.+..+-..+.+...|.+-...++..+ |..+|+..++..|.+.  .++..-.+.+...|+.+.|-.+|+
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l~~~~d~~~aR~lfe   94 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFLIKLNDINNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhCcHHHHHHHHH
Confidence            4445555555544333344444444444333222222 5555555555555421  122222344444555555555555


Q ss_pred             HHHH
Q 024858           88 RKLR   91 (261)
Q Consensus        88 ~al~   91 (261)
                      +++.
T Consensus        95 r~i~   98 (280)
T PF05843_consen   95 RAIS   98 (280)
T ss_dssp             HHCC
T ss_pred             HHHH
Confidence            5444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.02  E-value=0.028  Score=48.95  Aligned_cols=128  Identities=11%  Similarity=-0.025  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  108 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~  108 (261)
                      |..+.....+.+..+.|...++++++..+-.  ..++...|.+-.. .++.+-|..+|+.+++..+              
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--------------   67 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--------------   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--------------
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--------------
Confidence            4445566666677999999999998654432  2344446666455 4555559999999999753              


Q ss_pred             hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                                  ++.+.|......+...|+.+.|..+|++++..-|...   . |......=.+.|+.+....+++++..
T Consensus        68 ------------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   68 ------------SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             ------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                        3556788777888899999999999999999888776   3 66778888888999999999998887


Q ss_pred             C
Q 024858          185 G  185 (261)
Q Consensus       185 ~  185 (261)
                      .
T Consensus       136 ~  136 (280)
T PF05843_consen  136 L  136 (280)
T ss_dssp             H
T ss_pred             H
Confidence            5

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.02  E-value=0.06  Score=47.74  Aligned_cols=147  Identities=15%  Similarity=0.081  Sum_probs=99.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-S-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN  100 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~  100 (261)
                      .......+..++.+....|+++-|..++.++...++.. . ...+...-+.++-..|+..+|+..++..++....+....
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            55677889999999999999999999999998876321 0 112344457788999999999999999888322111000


Q ss_pred             --CcchHHH-----h-hchhhhhhhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858          101 --GKPTKTA-----R-SHGKKFQVSVRQETSRLLGNLAWAYMQK------TNFMAAEVVYQKAQMIDPDANK-ACNLGLC  165 (261)
Q Consensus       101 --~~~~~~~-----~-~~~~~~~~~l~p~~~~~~~~Lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~-~~~L~~~  165 (261)
                        .......     . .........-....+.++..+|.....+      +..++++..|+++++++|+... |+.+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence              0000000     0 0000000000011356788899999888      9999999999999999999998 8888887


Q ss_pred             HHHc
Q 024858          166 LIKR  169 (261)
Q Consensus       166 l~~~  169 (261)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.15  Score=43.02  Aligned_cols=180  Identities=22%  Similarity=0.240  Sum_probs=111.4

Q ss_pred             cCCHHHHHHHHHHHHH----cCCC--hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAIN----AGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ----ESLDNVLIDLYKK   75 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~----~~p~--~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~----~~~~~~L~~ly~~   75 (261)
                      .++++.|=..|-++..    .+.+  .+.++...+.+|.. ++..+|+..+++++.+.-+-..    ......+|.+|..
T Consensus        47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs  125 (288)
T KOG1586|consen   47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES  125 (288)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence            3556666666666653    3332  34445666666655 4889999999888887654111    1123457788766


Q ss_pred             c-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           76 C-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        76 ~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      - .++++||..|+++-+-. .++-.+.       +            --..+.-.+..-.+.++|.+|+..|+++....-
T Consensus       126 dl~d~ekaI~~YE~Aae~y-k~ees~s-------s------------ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  126 DLQDFEKAIAHYEQAAEYY-KGEESVS-------S------------ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHH-cchhhhh-------h------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5 88999999999987642 1110000       0            011333445555778999999999999988776


Q ss_pred             Cchh--------hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858          155 DANK--------ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  207 (261)
Q Consensus       155 ~~~~--------~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~  207 (261)
                      +|+-        .+.-|.|++-.++.-.+...+++-.... |...+.....-...++.++.
T Consensus       186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d-P~F~dsREckflk~L~~aie  245 (288)
T KOG1586|consen  186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD-PAFTDSRECKFLKDLLDAIE  245 (288)
T ss_pred             cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHh
Confidence            6652        2356888888888888888888777762 23334444444445555554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.98  E-value=0.025  Score=47.25  Aligned_cols=109  Identities=20%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----
Q 024858           76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM----  151 (261)
Q Consensus        76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~----  151 (261)
                      .-.+++|++.|.-|+-...-   ...+..                ..+.++..+||+|..+|+.+....++++|+.    
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~---~~~~~s----------------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~  150 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQI---KKEKPS----------------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE  150 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHH---hCCCHH----------------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence            45688888888887765210   000000                1245778899999999996665555555554    


Q ss_pred             ---hC--CCc----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHH
Q 024858          152 ---ID--PDA----NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL  204 (261)
Q Consensus       152 ---~~--P~~----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~  204 (261)
                         ..  |..    .. .+-+|.+..+.|++++|..+|.+++... ..+..+.-.+.|.+...
T Consensus       151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~-~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK-KASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHH
Confidence               33  222    13 4678999999999999999999999962 22223344455555543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.98  E-value=0.0013  Score=37.60  Aligned_cols=30  Identities=27%  Similarity=0.293  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   58 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P   58 (261)
                      ++..+|.++.++|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344445555555555555555555554444

...

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.94  E-value=0.0053  Score=57.60  Aligned_cols=98  Identities=19%  Similarity=0.209  Sum_probs=76.7

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      ..+|....|++.+..++-..|.+....+.+ |+.++.+.|-.-+|-..+.++|.+..                       
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~~~-----------------------  673 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAINS-----------------------  673 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhhcc-----------------------
Confidence            667888888888888888888644444444 78888888888888888888888742                       


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  162 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L  162 (261)
                         .-|-.+..+|.+|..+.+.+.|++.|+.|+..+|+++. ...|
T Consensus       674 ---sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  674 ---SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             ---cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence               12335677899999999999999999999999999887 5444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.92  E-value=0.0023  Score=38.15  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      .++++||.+|..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46788888888888888888888888875

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.86  E-value=0.0016  Score=36.79  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   59 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~   59 (261)
                      +++..+|.++...|++++|+..+++++...|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            36777888888888888888888888887776

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.005  Score=56.64  Aligned_cols=142  Identities=18%  Similarity=0.146  Sum_probs=100.4

Q ss_pred             HHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-HhcCCch------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           19 AINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF-RGLCSKQ------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        19 al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~-~~~~P~~------~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      +.....+.+.++..-+..+...|++..|.+.+... +.-.|..      .....+|+||-+..+.|.|.-++.+|.++|+
T Consensus       232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~  311 (696)
T KOG2471|consen  232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR  311 (696)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence            33445567778888899999999999999987543 3333321      1122346789999999999999999999997


Q ss_pred             hhcchhhhcC-cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858           92 LIYQGEAFNG-KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  169 (261)
Q Consensus        92 l~~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~  169 (261)
                      -... ...+| +..       +.+.+ ..-..-++++|.|..|...|++-+|.++|.+++...-.++. |..|+.|.+..
T Consensus       312 N~c~-qL~~g~~~~-------~~~tl-s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  312 NSCS-QLRNGLKPA-------KTFTL-SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHH-HHhccCCCC-------cceeh-hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            2110 00011 000       00000 00012358999999999999999999999999999999999 99999998754

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.82  E-value=0.02  Score=45.36  Aligned_cols=90  Identities=16%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      ++.....+..+..+-.+.++.+++...+..+.-+.|+.  ..+...-|.++...|++.+|+.+++.+.+-.         
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~--~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---------   74 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF--PELDLFDGWLHIVRGDWDDALRLLRELEERA---------   74 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---------
Confidence            34455677777888889999999999999999999994  4466678899999999999999999965532         


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  140 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~  140 (261)
                                       |.++-+-..++.|+..+|+.+
T Consensus        75 -----------------~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   75 -----------------PGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             -----------------CCChHHHHHHHHHHHHcCChH
Confidence                             234556677888888887654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.81  E-value=0.0095  Score=42.71  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          142 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       142 A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+..++++++.+|++.. .+.||..+...|++++|++.+-.++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            35567778888888887 788888888888888888888888876

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.78  E-value=0.0014  Score=57.56  Aligned_cols=88  Identities=19%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.+|+++.|+..|-.+|.++|..+..+..-+.++..+++...||.-|..++.++|+.+...-+  -+.....+|.+++|.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf--rg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF--RGYAERLLGNWEEAA  202 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch--hhHHHHHhhchHHHH
Confidence            456777777777777777777777777777777777777777777777777777763322111  233345567777777


Q ss_pred             HHHHHHHHhh
Q 024858           84 EMLKRKLRLI   93 (261)
Q Consensus        84 ~~~~~al~l~   93 (261)
                      ..++.+.++.
T Consensus       203 ~dl~~a~kld  212 (377)
T KOG1308|consen  203 HDLALACKLD  212 (377)
T ss_pred             HHHHHHHhcc
Confidence            7777777764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.74  E-value=0.0026  Score=58.18  Aligned_cols=100  Identities=12%  Similarity=-0.051  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858           31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH  110 (261)
Q Consensus        31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~  110 (261)
                      .+-+.....-+.++.|+..|-++++++|+.+..  ...-+..+.+.+.+-.|+.-..+++++.|                
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP----------------   69 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDP----------------   69 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCc----------------
Confidence            344555666788888888888888888874322  21223456688888888888888887643                


Q ss_pred             hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       111 ~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                ....++..-|.+++..+++.+|...|++...+.|+.+.
T Consensus        70 ----------~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   70 ----------TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             ----------hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence                      23345666788888888888888888888888888887

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.71  E-value=0.15  Score=38.40  Aligned_cols=102  Identities=15%  Similarity=0.018  Sum_probs=66.9

Q ss_pred             HHHHcCCcHHHHHHHHHHHhc---CCc-h------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           36 VMKQLDRSEEAIEAIKSFRGL---CSK-Q------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        36 ~~~~~g~~~eAi~~~~~~~~~---~P~-~------~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      --.+-|-|++|..-++++...   -|. .      .+..-+..|+..+...|+|++++..-.++|....          +
T Consensus        18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN----------R   87 (144)
T PF12968_consen   18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN----------R   87 (144)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH----------H
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh----------h
Confidence            345668999999999887643   242 1      2222345688888999999999999999988632          1


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      ...-|.+.-.+     .-.+.++.|.++...|+.+||+..|+.+-++
T Consensus        88 RGEL~qdeGkl-----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKL-----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHH-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchh-----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            11111111001     1246789999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10941 hypothetical protein; Provisional

Probab=96.70  E-value=0.022  Score=49.22  Aligned_cols=81  Identities=17%  Similarity=0.087  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHH
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL  202 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~  202 (261)
                      +.+.||=.+|.+.++++.|+++....+.++|+++. +...|.+|.++|.+..|..-++..+...+.+|    ........
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp----~a~~ik~q  257 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP----ISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch----hHHHHHHH
Confidence            46789999999999999999999999999999998 99999999999999999999999998633222    22345555


Q ss_pred             HHHHHh
Q 024858          203 LLELES  208 (261)
Q Consensus       203 l~~l~~  208 (261)
                      +.++..
T Consensus       258 l~~l~~  263 (269)
T PRK10941        258 IHSIEQ  263 (269)
T ss_pred             HHHHhh
Confidence            565654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.63  E-value=0.044  Score=53.60  Aligned_cols=132  Identities=24%  Similarity=0.219  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      ....++++.+.+. ..++  ..+.+-.++|-.+||..+|++..+.       .+   |-.+|..+|++++|.++-+.-=+
T Consensus       788 gaRAlR~a~q~~~-e~ea--kvAvLAieLgMlEeA~~lYr~ckR~-------DL---lNKlyQs~g~w~eA~eiAE~~DR  854 (1416)
T KOG3617|consen  788 GARALRRAQQNGE-EDEA--KVAVLAIELGMLEEALILYRQCKRY-------DL---LNKLYQSQGMWSEAFEIAETKDR  854 (1416)
T ss_pred             hHHHHHHHHhCCc-chhh--HHHHHHHHHhhHHHHHHHHHHHHHH-------HH---HHHHHHhcccHHHHHHHHhhccc
Confidence            3455666766433 3333  3567777889999999999886543       12   55678999999999875544211


Q ss_pred             hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhCCCc-----
Q 024858           92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA----------QMIDPDA-----  156 (261)
Q Consensus        92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a----------l~~~P~~-----  156 (261)
                      +                 |           .-..+++.+.-+...++.+.|+++|+|+          |.-+|..     
T Consensus       855 i-----------------H-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv  906 (1416)
T KOG3617|consen  855 I-----------------H-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV  906 (1416)
T ss_pred             e-----------------e-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence            1                 1           1246778888888888888888888875          2233432     


Q ss_pred             -----hh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          157 -----NK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       157 -----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                           +. |-..|..+...|..+.|+.+|..+-.
T Consensus       907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence                 23 34567888888888888888887655

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.56  E-value=0.0083  Score=38.49  Aligned_cols=38  Identities=21%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhh
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN  161 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~  161 (261)
                      +.++.||..+.+.|+|++|..+...+|+++|+|.....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            35778899999999999999999999999999987433

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.53  E-value=0.13  Score=49.20  Aligned_cols=145  Identities=19%  Similarity=0.094  Sum_probs=101.3

Q ss_pred             hcCCHHHHHHHHHHHHH-------cCCChHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAIN-------AGDRVDSALKDMAVVMKQLD-----RSEEAIEAIKSFRGLCSKQSQESLDNVLIDL   72 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~-------~~p~~~~al~~Lg~~~~~~g-----~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l   72 (261)
                      +..|++.|+.+|..+..       ..  .+.+...+|.+|.+..     ++..|..+|.++...+..++    ...||.+
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a----~~~lg~~  334 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA----QYLLGVL  334 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH----HHHHHHH
Confidence            46789999999999977       33  4557888999998854     56779999999988875533    3346766


Q ss_pred             HHHcC---CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 024858           73 YKKCG---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVV  145 (261)
Q Consensus        73 y~~~g---~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~  145 (261)
                      |..-.   ++..|.++|..|-..                            .+..+..++|.+|..    ..+...|..+
T Consensus       335 ~~~g~~~~d~~~A~~yy~~Aa~~----------------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~  386 (552)
T KOG1550|consen  335 YETGTKERDYRRAFEYYSLAAKA----------------------------GHILAIYRLALCYELGLGVERNLELAFAY  386 (552)
T ss_pred             HHcCCccccHHHHHHHHHHHHHc----------------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence            65544   467888888887664                            245678888888864    5789999999


Q ss_pred             HHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          146 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       146 ~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      |+++.+.++-.+. .......+.. ++++.+.-.+.....
T Consensus       387 ~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  387 YKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAE  425 (552)
T ss_pred             HHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence            9999999833322 2222222333 777777666654433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.46  E-value=0.0025  Score=56.05  Aligned_cols=52  Identities=17%  Similarity=0.068  Sum_probs=25.1

Q ss_pred             HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ..|.+++||+.+..++.++|..+  .++.--+.++++.++...||.-|..++++
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ei  177 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEI  177 (377)
T ss_pred             cCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhcc
Confidence            34555555555555555555422  12222344445555555555555555554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.34  E-value=0.55  Score=40.65  Aligned_cols=145  Identities=15%  Similarity=0.052  Sum_probs=104.0

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----c
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----C   76 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~   76 (261)
                      ..+++..|..++.++-..+  .+.+...++.++...    .+..+|+..|+.+....-.    .....||.+|..    .
T Consensus        53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~----~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA----EALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH----HHHHhHHHHHhcCCCcc
Confidence            4567888999998887632  236777788888554    3578899999866554322    233447777766    4


Q ss_pred             CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHH---HHHHHHHHHHcC-------CHHHHHHHH
Q 024858           77 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL---LGNLAWAYMQKT-------NFMAAEVVY  146 (261)
Q Consensus        77 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~---~~~Lg~~~~~~g-------~~~eA~~~~  146 (261)
                      .+..+|...|+++.+..                            ++.+   ..+||.+|..-.       +...|+..|
T Consensus       127 ~d~~~A~~~~~~Aa~~g----------------------------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~  178 (292)
T COG0790         127 LDLVKALKYYEKAAKLG----------------------------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLY  178 (292)
T ss_pred             cCHHHHHHHHHHHHHcC----------------------------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence            58999999999988762                            2223   677777776642       334799999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHc----CCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~----g~~~eA~~~~~~~l~~  185 (261)
                      +++-...  +.. ..+||.+|..-    .++.+|..+|+++-..
T Consensus       179 ~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         179 RKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             HHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence            9998876  555 77889887653    3899999999999886

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.33  E-value=0.14  Score=50.17  Aligned_cols=161  Identities=12%  Similarity=0.054  Sum_probs=103.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      -|-+++|..+|++-=.        +-.|-.+|..+|++.||.++.+.-=++.=.   ...++ -+.-+...++.+.|+++
T Consensus       813 LgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~-yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYN-YAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHH-HHHHHHhhccHHHHHHH
Confidence            3567788888876533        445778899999999999987653333222   12233 45556889999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQV-SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-----------  153 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----------  153 (261)
                      |+++-.-     +++-  .+.....++.... .-+..++..|.--|..+..+|+.+.|+.+|..|-...           
T Consensus       881 yEK~~~h-----afev--~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  881 YEKAGVH-----AFEV--FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK  953 (1416)
T ss_pred             HHhcCCh-----HHHH--HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence            9985321     1110  0000011111110 0011244566677888899999999999999886431           


Q ss_pred             ----------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 ----------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 ----------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                                ..+.. -+.||.-|...|++-+|+..|.++-..
T Consensus       954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                      12223 468999999999999999999987664

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.29  E-value=0.14  Score=40.09  Aligned_cols=61  Identities=18%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      .+.....+-...++.+++...+..+.-+.|+.  ..+..+-+.++...|+|+||+.+++...+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~--~e~d~~dg~l~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL--KELDMFDGWLLIARGNYDEAARILRELLS   72 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--cccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence            34444444445666777777776666666763  23444556666677777777777666544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.41  Score=44.40  Aligned_cols=165  Identities=13%  Similarity=0.051  Sum_probs=115.7

Q ss_pred             chhhcCCHHHHHHHHHHHHH---cCCC-------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAIN---AGDR-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLI   70 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~---~~p~-------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~   70 (261)
                      ..++.|++.+|+.-.....+   ..|.       .+..+..+|.-....|.+++|...+..+.++-.. +-......+|+
T Consensus       332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA  411 (629)
T KOG2300|consen  332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA  411 (629)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence            45678999999888877764   4455       3444556788888999999999999998886553 43445567799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcch-hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      ..|...|+-++-.++++..   .|++ ..+.+...                 -..+++--|...+.++++.||....++.
T Consensus       412 i~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l-----------------~a~~~~v~glfaf~qn~lnEaK~~l~e~  471 (629)
T KOG2300|consen  412 ISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL-----------------EASILYVYGLFAFKQNDLNEAKRFLRET  471 (629)
T ss_pred             HHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH-----------------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999988876655444432   2221 11110000                 1246677788889999999999999999


Q ss_pred             HhhCC--Cchh-----hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          150 QMIDP--DANK-----ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       150 l~~~P--~~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      |++..  |...     ..-||.+....|+..|+....+-++...
T Consensus       472 Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  472 LKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence            99862  1111     2347888889999999999988777753

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.12  E-value=0.14  Score=40.57  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +-...++.+++..++.-+--                          +.|+++++-..-|+++...|++.+|+..++.+..
T Consensus        19 ~al~~~~~~D~e~lL~ALrv--------------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRV--------------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHHccCChHHHHHHHHHHHH--------------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            33567788888877766433                          3577888999999999999999999999999988


Q ss_pred             hCCCchh-hhhHHHHHHHcCCHHHHHHHH-HHHHhC
Q 024858          152 IDPDANK-ACNLGLCLIKRTRYNEARSVL-EDVLYG  185 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~g~~~eA~~~~-~~~l~~  185 (261)
                      ..|..+. .-.++.||..+|+.+  .+.| .+++..
T Consensus        73 ~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~  106 (160)
T PF09613_consen   73 RAPGFPYAKALLALCLYALGDPS--WRRYADEVLES  106 (160)
T ss_pred             cCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhc
Confidence            8888887 667899998888754  3333 345553

>smart00028 TPR Tetratricopeptide repeats

Probab=95.99  E-value=0.01  Score=31.96  Aligned_cols=31  Identities=23%  Similarity=0.206  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   59 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~   59 (261)
                      ++..+|.++..+|++++|+..++++++..|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666666553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.94  E-value=0.029  Score=48.97  Aligned_cols=61  Identities=13%  Similarity=0.047  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  187 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~  187 (261)
                      .+.+.-....|+.++|...|.-|+.++|++++ ...+|.+.....+.-+|-.+|-+++..++
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            34455556788888888888888888888888 78888888888888888888888888743

>PRK10941 hypothetical protein; Provisional

Probab=95.86  E-value=0.076  Score=45.97  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=28.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   59 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~   59 (261)
                      +.+++++.|..+.+..+..+|+.+.-+..-|.+|.+.|.+..|..-++..+..+|+
T Consensus       192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            34445555555555555555555544444555555555555555555555555544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.83  E-value=0.027  Score=53.04  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~-al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.|+...|++++..|+...|.... .+.+|+.++..-|-..+|-..+.+++.+....+  .....+|+.|....+.+.|+
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHHhhhHHHH
Confidence            579999999999999998886543 488999999999999999999999999875533  23566899999999999999


Q ss_pred             HHHHHHHHhhc
Q 024858           84 EMLKRKLRLIY   94 (261)
Q Consensus        84 ~~~~~al~l~~   94 (261)
                      +.+++++++.+
T Consensus       697 ~~~~~a~~~~~  707 (886)
T KOG4507|consen  697 EAFRQALKLTT  707 (886)
T ss_pred             HHHHHHHhcCC
Confidence            99999999865

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.81  E-value=0.63  Score=44.57  Aligned_cols=141  Identities=16%  Similarity=0.076  Sum_probs=105.6

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHh-------cC-CchhHHHHHHHHHHHHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----DRSEEAIEAIKSFRG-------LC-SKQSQESLDNVLIDLYK   74 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-----g~~~eAi~~~~~~~~-------~~-P~~~~~~~~~~L~~ly~   74 (261)
                      +...|..+|+.+...  .+..+...+|.++..-     .+.+.|+..++.+..       .. |.     ..+-+|.+|.
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~-----a~~~lg~~Y~  299 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP-----AQYGLGRLYL  299 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc-----cccHHHHHHh
Confidence            356788999888664  5666778888888554     588899998887765       22 22     2334777777


Q ss_pred             HcC-----CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q 024858           75 KCG-----KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT---NFMAAEVVY  146 (261)
Q Consensus        75 ~~g-----~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g---~~~eA~~~~  146 (261)
                      +..     +++.|..+|.++-..                            +++++.+.||.+|....   ++..|..+|
T Consensus       300 ~g~~~~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy  351 (552)
T KOG1550|consen  300 QGLGVEKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYY  351 (552)
T ss_pred             cCCCCccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHH
Confidence            743     677889888888775                            35678899999998776   678999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHc----CCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~----g~~~eA~~~~~~~l~~  185 (261)
                      ..|...  .+.. .++++.||..-    -+.+.|..+|+++...
T Consensus       352 ~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  352 SLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK  393 (552)
T ss_pred             HHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence            999765  4455 67788877543    4899999999999886

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.68  E-value=0.023  Score=47.59  Aligned_cols=58  Identities=16%  Similarity=0.107  Sum_probs=53.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   60 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~   60 (261)
                      ....+|.+.|.++|.+++.+.|.....|+.+|......|+.+.|.+.|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3457889999999999999999999999999999999999999999999999999974

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.67  E-value=1.4  Score=39.03  Aligned_cols=146  Identities=12%  Similarity=-0.002  Sum_probs=94.1

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858           14 VLFWKAINAGDRVDSALKDMAVVMKQLDR------------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus        14 ~~~~~al~~~p~~~~al~~Lg~~~~~~g~------------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      .-|.+.++.+|.+.++|..+...--..-.            .+..+.+|++|++.+|++  ..+...+..++.+....++
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHH
Confidence            45778899999999999887654433222            345567899999999973  4455445567778888888


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHH-HHHHHH--HcCCHHHHHHHHHHHHhhCC----
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN-LAWAYM--QKTNFMAAEVVYQKAQMIDP----  154 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~-Lg~~~~--~~g~~~eA~~~~~~al~~~P----  154 (261)
                      ...-+++++...|                          +...+|.. |-....  ..-.+++-...|.+++..-.    
T Consensus        84 l~~~we~~l~~~~--------------------------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~  137 (321)
T PF08424_consen   84 LAKKWEELLFKNP--------------------------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS  137 (321)
T ss_pred             HHHHHHHHHHHCC--------------------------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence            8888888888643                          22333332 111111  12234455555555554211    


Q ss_pred             ---------Cch-----h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 024858          155 ---------DAN-----K-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  187 (261)
Q Consensus       155 ---------~~~-----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~  187 (261)
                               ...     . ...+...+...|-.+.|+..++..++.+.
T Consensus       138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence                     011     1 24677888889999999999999999753

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.64  E-value=0.026  Score=33.36  Aligned_cols=27  Identities=33%  Similarity=0.592  Sum_probs=16.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      +.||.+|..+|++++|+.++++++++.
T Consensus         6 ~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    6 NNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            346666666666666666666666654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.35  Score=45.71  Aligned_cols=138  Identities=16%  Similarity=0.071  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHH--HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           10 EAAIVLFWKAINAGDRVDSALKD--MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK   87 (261)
Q Consensus        10 ~~A~~~~~~al~~~p~~~~al~~--Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~   87 (261)
                      .-++.++..-+..+|.+++.+..  +.+.+...++...++...+..+..+|+++  ....+|+..+...|....++..+.
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33666666666788888876443  47778888999999999999999999853  344556666666676666665555


Q ss_pred             H-HHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858           88 R-KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  165 (261)
Q Consensus        88 ~-al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~  165 (261)
                      + +....|....+.+        |           -...+. +|......|+..++.....+++.+.|+++. ...+...
T Consensus       126 ~~a~~~~~~~~~~~~--------~-----------~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         126 EIAEWLSPDNAEFLG--------H-----------LIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHhcCcchHHHHh--------h-----------HHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            4 5554331110000        0           012233 699999999999999999999999999976 5555444


Q ss_pred             HHHc
Q 024858          166 LIKR  169 (261)
Q Consensus       166 l~~~  169 (261)
                      ..++
T Consensus       186 r~~~  189 (620)
T COG3914         186 RQEQ  189 (620)
T ss_pred             HHHh
Confidence            4443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.59  E-value=0.23  Score=40.16  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      .-.++..+|..|.+.|+.++|++.|.++...... .........+..+....|++........++-.+...+...     
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~-----  109 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW-----  109 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH-----
Confidence            4567889999999999999999999998876643 2233455567788889999999999999987764311000     


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .      .         .......-|..++.+|+|.+|...|-.++.-..
T Consensus       110 ~------~---------~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  110 E------R---------RNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             H------H---------HHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            0      0         012344567788889999999999988765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.49  E-value=0.018  Score=30.95  Aligned_cols=24  Identities=25%  Similarity=0.134  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      .++.+||.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356777888888888888877765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.43  E-value=0.059  Score=31.56  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCc
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVV--YQKAQMIDPDA  156 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~--~~~al~~~P~~  156 (261)
                      +.+..+|..+.++|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4677889999999999999999  66888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.38  E-value=0.46  Score=39.73  Aligned_cols=112  Identities=19%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             HcCCcHHHHHHHHHHHh----cCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhh
Q 024858           39 QLDRSEEAIEAIKSFRG----LCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK  113 (261)
Q Consensus        39 ~~g~~~eAi~~~~~~~~----~~P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~  113 (261)
                      ..-.+++|++.|.-++-    ...+ .-...+..-++.+|...|+.+.....+++|++....  ++.        ...  
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~--a~~--------~e~--  156 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE--AYE--------NED--  156 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH--HHH--------hCc--
Confidence            34567888887776542    1112 112334566899999999999999999998887421  110        000  


Q ss_pred             hhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-h-hhhHHH
Q 024858          114 FQVSVRQ-ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGL  164 (261)
Q Consensus       114 ~~~~l~p-~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-~-~~~L~~  164 (261)
                      +  -+.+ +...+.+.+|.+..+.|++++|...|.+++...-.+. . ..+++.
T Consensus       157 ~--~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  157 F--PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             C--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            0  0000 1234778899999999999999999999998654444 2 445544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.26  E-value=0.037  Score=48.37  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=52.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      .+.|+.++|..+++.++++                          .|.+++++..+|......++.-+|-.+|-+||.++
T Consensus       127 ~~~Gk~ekA~~lfeHAlal--------------------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis  180 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALAL--------------------------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS  180 (472)
T ss_pred             HhccchHHHHHHHHHHHhc--------------------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence            5667777777777777776                          46789999999999999999999999999999999


Q ss_pred             CCchh-hhh
Q 024858          154 PDANK-ACN  161 (261)
Q Consensus       154 P~~~~-~~~  161 (261)
                      |.|.. ..|
T Consensus       181 P~nseALvn  189 (472)
T KOG3824|consen  181 PGNSEALVN  189 (472)
T ss_pred             CCchHHHhh
Confidence            99986 544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=95.05  E-value=0.058  Score=33.12  Aligned_cols=41  Identities=32%  Similarity=0.425  Sum_probs=28.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858          160 CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  205 (261)
Q Consensus       160 ~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~  205 (261)
                      ++|+.+|+++|+.+.|...+++++..   +++  .....|..++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~---~~~--~q~~eA~~LL~~   43 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE---GDE--AQRQEARALLAQ   43 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc---CCH--HHHHHHHHHHhc
Confidence            57888899999999999999988864   222  223456666543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.83  E-value=0.14  Score=36.76  Aligned_cols=68  Identities=16%  Similarity=0.129  Sum_probs=48.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      .+.|++.+|++.+.+.+..........         ...        ....++.++|.++...|++++|+..+++|+.+-
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~--------~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSS---------SNS--------GLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccch---------hhH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            578999999999999887632110000         000        123478899999999999999999999999986


Q ss_pred             CCchh
Q 024858          154 PDANK  158 (261)
Q Consensus       154 P~~~~  158 (261)
                      ....+
T Consensus        72 re~~D   76 (94)
T PF12862_consen   72 RENGD   76 (94)
T ss_pred             HHHCC
Confidence            65544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.72  E-value=0.17  Score=46.86  Aligned_cols=128  Identities=17%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             HHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858           37 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV  116 (261)
Q Consensus        37 ~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~  116 (261)
                      |.+.....-+..-.+.+.....+.+ . ...+-+.++...|++.+|.+.+...=--..+|                   -
T Consensus       216 llq~~~Lk~~krevK~vmn~a~~s~-~-~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g-------------------~  274 (696)
T KOG2471|consen  216 LLQTRNLKLAKREVKHVMNIAQDSS-M-ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAG-------------------G  274 (696)
T ss_pred             HHHHHHHHHHHHhhhhhhhhcCCCc-H-HHHHHHHHHHHhcchHHHHHHHHhcccccccC-------------------c
Confidence            3455555555555555544433322 2 23345677788899999887665521100100                   0


Q ss_pred             hcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCCC-------c--hh-hhhHHHHHHHcCCHHHH
Q 024858          117 SVRQETSR--LLGNLAWAYMQKTNFMAAEVVYQKAQM---------IDPD-------A--NK-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus       117 ~l~p~~~~--~~~~Lg~~~~~~g~~~eA~~~~~~al~---------~~P~-------~--~~-~~~L~~~l~~~g~~~eA  175 (261)
                      .+.|+-..  .|+|||.++.+.|.|.-+..+|.+||.         +.|.       +  -. .+|.|..|...||.-.|
T Consensus       275 ~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A  354 (696)
T KOG2471|consen  275 TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA  354 (696)
T ss_pred             cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH
Confidence            11122222  568999999999999999999999996         1221       1  13 58999999999999999


Q ss_pred             HHHHHHHHhC
Q 024858          176 RSVLEDVLYG  185 (261)
Q Consensus       176 ~~~~~~~l~~  185 (261)
                      .+.|.+++..
T Consensus       355 fqCf~~av~v  364 (696)
T KOG2471|consen  355 FQCFQKAVHV  364 (696)
T ss_pred             HHHHHHHHHH
Confidence            9999999885

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.64  E-value=0.15  Score=36.64  Aligned_cols=72  Identities=19%  Similarity=0.120  Sum_probs=51.7

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCch---------h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHH
Q 024858          134 MQKTNFMAAEVVYQKAQMIDPDAN---------K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL  203 (261)
Q Consensus       134 ~~~g~~~eA~~~~~~al~~~P~~~---------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l  203 (261)
                      .+.|+|.+|++.+.+.+.......         . ..++|.+....|++++|+..+++++... ....+......+...+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A-re~~D~~~l~~al~~~   87 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA-RENGDRRCLAYALSWL   87 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
Confidence            578999999999999887643221         2 4689999999999999999999999962 2233334444455444


Q ss_pred             HHH
Q 024858          204 LEL  206 (261)
Q Consensus       204 ~~l  206 (261)
                      ..+
T Consensus        88 ~~l   90 (94)
T PF12862_consen   88 ANL   90 (94)
T ss_pred             HHH
Confidence            444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.48  E-value=0.1  Score=40.83  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ...++++++..++...=-                          +.|+.+++-.--|+++...|+++||+..++...+-.
T Consensus        21 L~~~d~~D~e~lLdALrv--------------------------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRV--------------------------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHH--------------------------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            346777777776665322                          356778888889999999999999999999998887


Q ss_pred             CCchh-hhhHHHHHHHcCCHH
Q 024858          154 PDANK-ACNLGLCLIKRTRYN  173 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~  173 (261)
                      |..+. .-.++.|+..+|+.+
T Consensus        75 ~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        75 GAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CCchHHHHHHHHHHHhcCChH
Confidence            77776 667789998888764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.37  E-value=5.5  Score=39.73  Aligned_cols=179  Identities=14%  Similarity=0.093  Sum_probs=112.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCC--C-------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch---hHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGD--R-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQESLDNVLID   71 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p--~-------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~---~~~~~~~~L~~   71 (261)
                      ..+.++++|..+..++-..=|  +       .++....-|.+...+|+.++|++..+.++..-|.+   .......+++.
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            456788888888888765222  1       23334446888899999999999999999887763   12234466788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhc------CcchHHHhhch--------hhhh------hhcCCCcHH---HHHH
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFN------GKPTKTARSHG--------KKFQ------VSVRQETSR---LLGN  128 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~------~~~~~~~~~~~--------~~~~------~~l~p~~~~---~~~~  128 (261)
                      +..-.|++++|..+.+++.++.-.-+.+.      .........+|        +.+.      +.-+|-+.-   ++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            88899999999999999988742111110      00001111111        0111      111122111   2333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC----CCch--h--hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          129 LAWAYMQKTNFMAAEVVYQKAQMID----PDAN--K--ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       129 Lg~~~~~~g~~~eA~~~~~~al~~~----P~~~--~--~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+++.+   ++++..-.++.+++-    |...  .  .++|+.+....|++++|.....++...
T Consensus       586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4444443   777777777777653    3322  2  238899999999999999999887774

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.35  E-value=0.23  Score=46.10  Aligned_cols=130  Identities=15%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ++-.||.-.|-.-...++...|..|......+.+....|.|+.+.+.+..+-+.- ..+  ..... +-.-..+.||+++
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~-~~r~~~~l~r~~~  375 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRC-RLRSLHGLARWRE  375 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHH-HHHhhhchhhHHH
Confidence            4567888888888888999899999888888999999999999998876543322 221  11222 3333477899999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |...-.-.|.- +                         -++++++.--+..-.+.|-+++|...+++.+.++|.... |.
T Consensus       376 a~s~a~~~l~~-e-------------------------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v  429 (831)
T PRK15180        376 ALSTAEMMLSN-E-------------------------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV  429 (831)
T ss_pred             HHHHHHHHhcc-c-------------------------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence            98765554432 1                         023444444455556778899999999999999986554 54


Q ss_pred             h
Q 024858          161 N  161 (261)
Q Consensus       161 ~  161 (261)
                      |
T Consensus       430 ~  430 (831)
T PRK15180        430 N  430 (831)
T ss_pred             e
Confidence            3

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.20  E-value=3.8  Score=36.36  Aligned_cols=137  Identities=11%  Similarity=-0.014  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH--HcCCHHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK--KCGKVEEQIEML   86 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~--~~g~~~eA~~~~   86 (261)
                      .+.-+..|++|++.+|+....+..+=....+....++..+..++++..+|++... +...|-....  ..-.+++....|
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~L-W~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPEL-WREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHhccCcHHHHHHHH
Confidence            3456789999999999999888777777778888888889999999999985322 2211221111  234688999999


Q ss_pred             HHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           87 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        87 ~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .++|..........      ...+.....  ++-....+...+...+.+.|-.+.|+..++-.++++=
T Consensus       126 ~~~l~~L~~~~~~~------~~~~~~~~~--~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  126 EKCLRALSRRRSGR------MTSHPDLPE--LEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHhhccc------cccccchhh--HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            99988632110000      000000000  0001234677889999999999999999999999863

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.16  E-value=0.48  Score=48.62  Aligned_cols=164  Identities=16%  Similarity=0.071  Sum_probs=112.5

Q ss_pred             hhhcCCHHHHHH------HHHHHH-HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-------HhcCCchhHHHHHHH
Q 024858            3 QLVQKDPEAAIV------LFWKAI-NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF-------RGLCSKQSQESLDNV   68 (261)
Q Consensus         3 ~~~~~~~~~A~~------~~~~al-~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~-------~~~~P~~~~~~~~~~   68 (261)
                      ++.++.+.+|..      ++.... .+.|.....+..|+.++...|++++|+..-.++       +..++.+-.. ....
T Consensus       942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~-~y~n 1020 (1236)
T KOG1839|consen  942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL-AYGN 1020 (1236)
T ss_pred             hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH-HhhH
Confidence            455677776666      555444 367889999999999999999999999876544       4444432111 2233


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ++......+....|...+.+++++..             -..+     ..-|..+.+-.|++.++...++++-|+.+.+.
T Consensus      1021 lal~~f~~~~~~~al~~~~ra~~l~~-------------Ls~g-----e~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKL-------------LSSG-----EDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred             HHHHHHhccCccchhhhHHHHHHhhc-------------cccC-----CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence            66666778888888888888887631             0001     12245556778999999999999999999999


Q ss_pred             HHhhC-----CCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~-----P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |++..     |...   . ...++.....+|++..|....+.....
T Consensus      1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            99864     2222   2 345677777777777777666655443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.11  E-value=0.28  Score=31.40  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   60 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~   60 (261)
                      +.++.+|+.+..+|+|.+|...++.+++..|++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            457889999999999999999999999999984

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.02  E-value=4.5  Score=36.57  Aligned_cols=141  Identities=11%  Similarity=0.037  Sum_probs=92.2

Q ss_pred             HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--------------CCc---------hh-HHHH---HHHHHHHH
Q 024858           21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--------------CSK---------QS-QESL---DNVLIDLY   73 (261)
Q Consensus        21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--------------~P~---------~~-~~~~---~~~L~~ly   73 (261)
                      ...|-+.+++..++.++.++|++..|.+++++++=.              ++.         .. +...   .......+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            456778999999999999999999999988877311              110         00 1111   11233556


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      .+.|-+.-|.+..+-.+.++|.++.+                        -++..+-..-.+.++|+==+..++......
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~------------------------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~  169 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPL------------------------GVLLFIDYYALRSRQYQWLIDFSESPLAKC  169 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcc------------------------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence            78888888888888888887632211                        134444444466677766666666655421


Q ss_pred             CC-----chh-hhhHHHHHHHcCCH---------------HHHHHHHHHHHhC
Q 024858          154 PD-----ANK-ACNLGLCLIKRTRY---------------NEARSVLEDVLYG  185 (261)
Q Consensus       154 P~-----~~~-~~~L~~~l~~~g~~---------------~eA~~~~~~~l~~  185 (261)
                      ..     -+. .+..+.++...++.               ++|...+++++..
T Consensus       170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence            11     123 56677777778887               8899999888886

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.98  E-value=0.7  Score=40.95  Aligned_cols=106  Identities=13%  Similarity=0.024  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-Cc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-SK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      .+.-+..-|.-|...++|..|+..|.+.++.. ++ +.+..++++-+.+-.-.|.|..|+.-..+++.+.          
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~----------  149 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK----------  149 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence            45556778999999999999999999988743 33 3344566666666677789999998888888874          


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                                      |.+..++..=+.|+.++.++++|.......+.++-+..
T Consensus       150 ----------------P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  150 ----------------PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             ----------------cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence                            34556777778888888888888888887777655443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.70  E-value=0.97  Score=36.55  Aligned_cols=99  Identities=20%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      ....-+|+.|.+.|+.++|++.|.++....-              .-+.         .-+++.++-.+....|++....
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--------------~~~~---------~id~~l~~irv~i~~~d~~~v~   93 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCT--------------SPGH---------KIDMCLNVIRVAIFFGDWSHVE   93 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--------------CHHH---------HHHHHHHHHHHHHHhCCHHHHH
Confidence            3456689999999999999999999766421              0011         1257788888999999999999


Q ss_pred             HHHHHHHhhCCC--chh-----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          144 VVYQKAQMIDPD--ANK-----ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       144 ~~~~~al~~~P~--~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+..+|-.+-..  +..     ...-|..++.+++|.+|...|-.+...
T Consensus        94 ~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   94 KYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            999998876443  222     234588889999999999999887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.61  E-value=0.73  Score=40.06  Aligned_cols=62  Identities=16%  Similarity=0.038  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      -.++..++..+...|+++.++..+++.+.++|-+.. |..|-.+|...|+...|+..|+++-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            457888999999999999999999999999999999 99999999999999999999998766

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.58  E-value=3.8  Score=35.60  Aligned_cols=209  Identities=15%  Similarity=0.194  Sum_probs=108.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-----KQSQESLDNVLIDLYKK   75 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~----~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-----~~~~~~~~~~L~~ly~~   75 (261)
                      .+.++++|+..|++++.+.+...    .|+..+-.+...+|+++|-...|++.+..-.     +...-.+.++|- .-..
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD-yiSt  117 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD-YIST  117 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHhh
Confidence            45566777777777777665543    3455566666777777776666655432110     111112222221 1123


Q ss_pred             cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~----~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      ..+.+---+.|+..|..-.                        +..+.+.|    .-||.+|...|.|..-.+.+++.-.
T Consensus       118 S~~m~LLQ~FYeTTL~ALk------------------------dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~  173 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDALK------------------------DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ  173 (440)
T ss_pred             hhhhHHHHHHHHHHHHHHH------------------------hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence            3333333444444333210                        00122333    3488888888888777766665432


Q ss_pred             -hCCCch----h-------hhhH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhcCCCCchhhh
Q 024858          152 -IDPDAN----K-------ACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDL  218 (261)
Q Consensus       152 -~~P~~~----~-------~~~L-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  218 (261)
                       +..++.    .       .+.| -..|-.+.+-..-..+|++++... ...+||.    ..-..++|++...-.+-.+.
T Consensus       174 SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK-SAIPHPl----ImGvIRECGGKMHlreg~fe  248 (440)
T KOG1464|consen  174 SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK-SAIPHPL----IMGVIRECGGKMHLREGEFE  248 (440)
T ss_pred             HhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh-ccCCchH----HHhHHHHcCCccccccchHH
Confidence             111111    1       1223 335666777777788899988862 2334554    56667777764432222222


Q ss_pred             cccchhHHHHHHHHHHHHhhccCCCCCc
Q 024858          219 LGLNLEDEFVNGLEEMVRVWAPSRSKRL  246 (261)
Q Consensus       219 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~  246 (261)
                      -+   ..+|-++|.++-..-.|-|..|+
T Consensus       249 ~A---hTDFFEAFKNYDEsGspRRttCL  273 (440)
T KOG1464|consen  249 KA---HTDFFEAFKNYDESGSPRRTTCL  273 (440)
T ss_pred             HH---HhHHHHHHhcccccCCcchhHHH
Confidence            22   36788888887432224555555

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.50  E-value=0.76  Score=44.05  Aligned_cols=100  Identities=19%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      +++. +.-..+..+|..+++.|...++-++.++ ++                   -.++....+|..||....+.|.|.+
T Consensus       357 LWn~-A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~-~~-------------------~~FaK~qR~l~~CYL~L~QLD~A~E  415 (872)
T KOG4814|consen  357 LWNT-AKKLFKMEKYVVSIRFYKLSLKDIISDN-YS-------------------DRFAKIQRALQVCYLKLEQLDNAVE  415 (872)
T ss_pred             HHHh-hHHHHHHHHHHHHHHHHHHHHHhccchh-hh-------------------hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3443 3344778899999999999998754221 00                   1245678999999999999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.+|-+.+|.++- ...+-.+...-|.-++|+.+..+....
T Consensus       416 ~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  416 VYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99999999999986 555556666778999999998877664

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.36  E-value=1.6  Score=42.72  Aligned_cols=123  Identities=19%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .|+++.|+.+|-++-.        ...--.+|-+.|++.+|-.+-+++.  .|.. ...++..-+.=+.++|+|.||.++
T Consensus       778 ~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~-t~~~yiakaedldehgkf~eaeql  846 (1636)
T KOG3616|consen  778 KGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEA-TISLYIAKAEDLDEHGKFAEAEQL  846 (1636)
T ss_pred             chhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--Cchh-HHHHHHHhHHhHHhhcchhhhhhe
Confidence            4555555555554321        1112244556666666665554443  3442 233444455556778888888776


Q ss_pred             HHH------HHHhhcchhhhcCcchHH----HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           86 LKR------KLRLIYQGEAFNGKPTKT----ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        86 ~~~------al~l~~~~~~~~~~~~~~----~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      |-.      ++.+...    .+.....    .+.|+..        ..+.+..+|.-|...|+..+|+..|.+|-.
T Consensus       847 yiti~~p~~aiqmydk----~~~~ddmirlv~k~h~d~--------l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  847 YITIGEPDKAIQMYDK----HGLDDDMIRLVEKHHGDH--------LHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             eEEccCchHHHHHHHh----hCcchHHHHHHHHhChhh--------hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence            632      2222100    0111111    1223322        246888999999999999999999988743

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.30  E-value=0.1  Score=27.91  Aligned_cols=19  Identities=21%  Similarity=0.272  Sum_probs=9.9

Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLK   87 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~   87 (261)
                      |+.++..+|++++|...++
T Consensus         7 la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    7 LARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHcCCHHHHHHHHh
Confidence            4555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.19  E-value=0.86  Score=39.62  Aligned_cols=65  Identities=18%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ...++..++..+...|+++.++..+++.+..+|-  ++..+.-+...|.+.|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~--~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY--DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3556777899999999999999999999999997  3445656778999999999999999997664

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.17  E-value=0.6  Score=36.01  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHHHHHh-hCCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHH
Q 024858          124 RLLGNLAWAYMQK---TNFMAAEVVYQKAQM-IDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRK  197 (261)
Q Consensus       124 ~~~~~Lg~~~~~~---g~~~eA~~~~~~al~-~~P~~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~  197 (261)
                      ...+|++|++...   .+..+-+..++..++ -.|+...  .+.|+..+.+.++|+.+++++...+..   .+++.+   
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~n~Q---  106 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPNNRQ---  106 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCCcHH---
Confidence            4779999999665   456678999999997 5565553  678999999999999999999999996   444432   


Q ss_pred             HHHHHHHHHH
Q 024858          198 RAEELLLELE  207 (261)
Q Consensus       198 ~a~~~l~~l~  207 (261)
                       |.++-..+.
T Consensus       107 -a~~Lk~~ie  115 (149)
T KOG3364|consen  107 -ALELKETIE  115 (149)
T ss_pred             -HHHHHHHHH
Confidence             555554444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.16  E-value=0.43  Score=43.55  Aligned_cols=103  Identities=18%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      +.-+.++|.|.-|+.-|+.+|++...|.+.. ++.+  .+.++.+.+     -..+--.|..||..+++.+-|+..-.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~-k~~~--~~~~di~~v-----aSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALS-KPFK--ASAEDISSV-----ASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhcc-CCCC--CChhhHHHH-----HHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            4556788999999999999999876554322 1000  011111111     0123456899999999999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLE  180 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~  180 (261)
                      +.++|.... +..-+.|+..+.||.+|.+-+-
T Consensus       255 I~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 8888999999999999976543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.06  E-value=3.7  Score=36.19  Aligned_cols=51  Identities=12%  Similarity=0.134  Sum_probs=41.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 024858            5 VQKDPEAAIVLFWKAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRG   55 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p----~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~   55 (261)
                      ..|.++-|...+.++...++    ..+.....-+.++-..|+..+|+..++..+.
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46888899999998887542    2456677789999999999999999888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.70  E-value=0.37  Score=28.15  Aligned_cols=32  Identities=22%  Similarity=0.095  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHH--HHHHHhcCCc
Q 024858           28 SALKDMAVVMKQLDRSEEAIEA--IKSFRGLCSK   59 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~--~~~~~~~~P~   59 (261)
                      +.+..+|..+.++|++++|+..  |+-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4566778888888888888888  5466656554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.50  E-value=1.1  Score=36.93  Aligned_cols=58  Identities=28%  Similarity=0.385  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858           63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  142 (261)
Q Consensus        63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA  142 (261)
                      ..+...||..|. ..+.++|+.+|-++|++..++..               +       +++++..|+.+|.++|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~---------------~-------n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN---------------F-------NPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC---------------C-------CHHHHHHHHHHHHHhcchhhh
Confidence            346677888776 66999999999999998643211               1       478999999999999999988


Q ss_pred             H
Q 024858          143 E  143 (261)
Q Consensus       143 ~  143 (261)
                      -
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            4

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.42  E-value=8.6  Score=35.75  Aligned_cols=59  Identities=24%  Similarity=0.321  Sum_probs=50.3

Q ss_pred             cHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858          122 TSRLLGNLAW--AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       122 ~~~~~~~Lg~--~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                      +.++-+.|+.  .+..+|+|.++.-+-.-..+++| ++. +.-+|.|+....+|+||..++.+
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4556666644  46899999999999999999999 666 77889999999999999999887

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=5.5  Score=37.99  Aligned_cols=114  Identities=21%  Similarity=0.081  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHH
Q 024858           46 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  125 (261)
Q Consensus        46 Ai~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  125 (261)
                      ++..+..-+..+|.+....+.+.+.-.+...++...++...+..+..                          +|++..+
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~--------------------------~~~~~~~  103 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV--------------------------NPENCPA  103 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc--------------------------CcccchH
Confidence            55555555666666433223333455556677777777766666654                          4567889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCchh-hhhH------HHHHHHcCCHHHHHHHHHHHHhC
Q 024858          126 LGNLAWAYMQKTNFMAAEVVYQK-AQMIDPDANK-ACNL------GLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       126 ~~~Lg~~~~~~g~~~eA~~~~~~-al~~~P~~~~-~~~L------~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.|||.+.+..|....+...+.. +....|++.. ...+      +..+..+|+..++....++++..
T Consensus       104 ~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~  171 (620)
T COG3914         104 VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL  171 (620)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999888888777777766 9999999986 4444      88888889999999998888886

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.11  E-value=8.8  Score=35.79  Aligned_cols=86  Identities=15%  Similarity=0.072  Sum_probs=43.7

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHcCCcHHHHHH-------HHHHHhcC---------CchhHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSA-LKDMAVVMKQLDRSEEAIEA-------IKSFRGLC---------SKQSQESLD   66 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~a-l~~Lg~~~~~~g~~~eAi~~-------~~~~~~~~---------P~~~~~~~~   66 (261)
                      +..||++++..+.+ +-++-|..|.. ...++.-+.++|..+.|...       ++-+++++         -.-.....+
T Consensus       272 v~~~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W  350 (443)
T PF04053_consen  272 VLRGDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKW  350 (443)
T ss_dssp             HHTT-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHH
T ss_pred             HHcCChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHH
Confidence            45666776555543 11222332222 33456666677777777643       22222221         110012345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKL   90 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al   90 (261)
                      ..||++...+|+++-|+++|+++-
T Consensus       351 ~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  351 KQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             HHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhc
Confidence            568999999999999999999853

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.92  E-value=0.7  Score=38.08  Aligned_cols=55  Identities=22%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----hh-hhhHHHHHHHcCCHHHHH
Q 024858          121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----NK-ACNLGLCLIKRTRYNEAR  176 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~-~~~L~~~l~~~g~~~eA~  176 (261)
                      ++++....||..|. ..+.++|+..|-++|++.+.+    ++ ...|+.++.++|++++|-
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            46888999998887 779999999999999987654    34 568999999999999985

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.88  E-value=7  Score=35.36  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch--hhh-----cCcchHHHhhchhhhhhhcCCCcH--
Q 024858           53 FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--EAF-----NGKPTKTARSHGKKFQVSVRQETS--  123 (261)
Q Consensus        53 ~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~--~~~-----~~~~~~~~~~~~~~~~~~l~p~~~--  123 (261)
                      .++.+|-+  .....-++.++..+|++..|.+.+++||=.....  ..+     +..... ++     +. -..+++-  
T Consensus        32 ll~~~PyH--idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~-~r-----L~-~~~~eNR~f  102 (360)
T PF04910_consen   32 LLQKNPYH--IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN-CR-----LD-YRRPENRQF  102 (360)
T ss_pred             HHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc-cc-----cC-CccccchHH
Confidence            35667874  3344458999999999999999999998764311  111     100000 00     00 0011222  


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chh--hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          124 -RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-ANK--ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       124 -~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~--~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                       -+++.....+.+.|-+.-|+++.+-.+.+||+ ++-  .+.+-..-++.++++=-+.+++....
T Consensus       103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence             25567788889999999999999999999999 764  45566666778888888888877655

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.65  E-value=6.3  Score=32.00  Aligned_cols=150  Identities=12%  Similarity=0.098  Sum_probs=96.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  112 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~  112 (261)
                      -+.-+.+.|..++|...+..+-+.+-..-.....+-.+.+..+.|+..+|+..|..+-+-.+....        .     
T Consensus        64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--------~-----  130 (221)
T COG4649          64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--------G-----  130 (221)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--------h-----
Confidence            345567789999999999888776654222233444678889999999999999986553220000        0     


Q ss_pred             hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 024858          113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ-MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  190 (261)
Q Consensus       113 ~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al-~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~  190 (261)
                               -.-+...-++++...|-|+.-..-.+..- .-+|--.. ...||.+-.+.|++..|..+|..+.... ..|
T Consensus       131 ---------rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da-~ap  200 (221)
T COG4649         131 ---------RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA-QAP  200 (221)
T ss_pred             ---------hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc-cCc
Confidence                     01134456778889999988766544321 11222233 4579999999999999999999988852 122


Q ss_pred             cchhhHHHHHHHHHHHH
Q 024858          191 EDGRTRKRAEELLLELE  207 (261)
Q Consensus       191 ~~~~~~~~a~~~l~~l~  207 (261)
                      .+  -.+++.-++.-|.
T Consensus       201 rn--irqRAq~mldlI~  215 (221)
T COG4649         201 RN--IRQRAQIMLDLID  215 (221)
T ss_pred             HH--HHHHHHHHHHHHh
Confidence            22  2345555555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.62  E-value=2.2  Score=31.67  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=62.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      .-+.+.|++-+|+++.+..+.....+..    ..-.-+.+|..|. +.-+-+++++-..         -.--++.+|.++
T Consensus         4 ~~~~~rGnhiKAL~iied~i~~h~~~~~----~~~lh~~QG~if~~lA~~ten~d~k~~---------yLl~sve~~s~a   70 (111)
T PF04781_consen    4 KDYFARGNHIKALEIIEDLISRHGEDES----SWLLHRLQGTIFYKLAKKTENPDVKFR---------YLLGSVECFSRA   70 (111)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHccCCCc----hHHHHHHHhHHHHHHHHhccCchHHHH---------HHHHhHHHHHHH
Confidence            3456789999999999888776432110    0000111222211 1111112221110         123478999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..+.|+.+. .+.||.-+-..--|+++....++.|..
T Consensus        71 ~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   71 VELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            999999988 888888877777888888888888875

>PF12854 PPR_1: PPR repeat

Probab=91.43  E-value=0.44  Score=27.26  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKR   88 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~   88 (261)
                      ..++.|.+.|.+.|+.++|.+++++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            4577789999999999999999876

>PF12854 PPR_1: PPR repeat

Probab=91.31  E-value=0.43  Score=27.30  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             CCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 024858          153 DPDANKACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       153 ~P~~~~~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                      .||...+..|-..|.+.|+.++|.+++++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            45555566677777777777777777664

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.30  E-value=0.39  Score=28.44  Aligned_cols=29  Identities=28%  Similarity=0.235  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      +++..||.+-...++|++|+.-|+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777888888888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.22  E-value=0.7  Score=32.10  Aligned_cols=55  Identities=13%  Similarity=-0.003  Sum_probs=44.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh---hHHHHHHHcCCHHHHHHHHHH
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC---NLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~---~L~~~l~~~g~~~eA~~~~~~  181 (261)
                      ..-|.=+..+.+..+|+..++++|+..++.+. +.   .|..+|...|+|.+.+.+--+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567999999999999999999999886 54   456788999999999887654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.16  E-value=7.4  Score=39.75  Aligned_cols=106  Identities=16%  Similarity=0.098  Sum_probs=68.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .+....+-|+||-.+|++ ..++.+  +.+..... ..+..+.....-+-+.|.+|..||.+..+.|...+|+..|-+| 
T Consensus      1056 ~iai~~~LyEEAF~ifkk-f~~n~~--A~~VLie~-i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKK-FDMNVS--AIQVLIEN-IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHH-hcccHH--HHHHHHHH-hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence            344567788888888877 232211  11000000 0000111111112256889999999999999999999999876 


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                          |++. +...-.+-.+.|.|++-++++..+..-
T Consensus      1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence                6666 667777788899999999998877763

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.11  E-value=0.56  Score=40.38  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   60 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~   60 (261)
                      +.+++++.|...-.+.+.++|+++.-+..-|.+|.|+|-+.-|+.-+..++...|++
T Consensus       192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            445556666666666666666666555556666666666666666666656666653

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.99  E-value=3  Score=31.01  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhcchhhhcC
Q 024858           34 AVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGK-----------VEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        34 g~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~~g~-----------~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      +.-+.+.|++-+|.++++.++...+++... .++..-|.++.++..           .-.|+++|.++..+         
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L---------   73 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL---------   73 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---------
Confidence            445566777777777777777766653211 223333333222111           11234444444443         


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                                       .|+.+..++.||.=+....-|+++..--+++|.+.
T Consensus        74 -----------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   74 -----------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             -----------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence                             34556678888887777778888888888887753

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=90.92  E-value=5.5  Score=33.74  Aligned_cols=149  Identities=17%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc---hhhhcCcc---
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ---GEAFNGKP---  103 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~---~~~~~~~~---  103 (261)
                      +..++.+..+.||+++.+.++++++..+|+-..+ =.++|...|.      ..+...+.+++....   .....+..   
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~e-ERnLlsvayK------n~i~~~R~s~R~l~~~e~~~~~~~~~~~~   76 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEE-ERNLLSVAYK------NVIGSRRASWRILSSIEQKEENKGNEKQV   76 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHH------hccccchHHHHhhhhHhhhhcccchhHHH
Confidence            5678999999999999999999999998862222 2455665543      334444444443210   00000000   


Q ss_pred             -------h----HHHhhchhhhh---hhcCCC--cHH--HH--HHHHHHHHH----------cCCHHHHHHHHHHHHh--
Q 024858          104 -------T----KTARSHGKKFQ---VSVRQE--TSR--LL--GNLAWAYMQ----------KTNFMAAEVVYQKAQM--  151 (261)
Q Consensus       104 -------~----~~~~~~~~~~~---~~l~p~--~~~--~~--~~Lg~~~~~----------~g~~~eA~~~~~~al~--  151 (261)
                             .    .+...+...+.   -.+-|.  +++  +.  -..|..|.-          ..-.+.|..+|++|+.  
T Consensus        77 ~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a  156 (236)
T PF00244_consen   77 KLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIA  156 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHH
Confidence                   0    00000001110   011222  111  11  223444421          1234789999999986  


Q ss_pred             ---hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858          152 ---IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 ---~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~  185 (261)
                         +.|.+|.    ..|.+.+|.+ .|+.++|+.+.++++..
T Consensus       157 ~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  157 KKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             hcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence               5688874    3466666644 89999999999988875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.90  E-value=11  Score=37.60  Aligned_cols=130  Identities=13%  Similarity=0.039  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSK-------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~-------~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      -+-.+..+.|+.||..++.++...-|.       +....+..+-+.+....|+.++|++.-+.++..-|.+..+.     
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-----  495 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-----  495 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-----
Confidence            455667889999999998876553222       11223334455666789999999999999998744221111     


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----Cchh-hh--hHHHHHHHcC--CHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP----DANK-AC--NLGLCLIKRT--RYNEAR  176 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~-~~--~L~~~l~~~g--~~~eA~  176 (261)
                                      ..-++.++|.+.+-+|++++|..+.+++.++.-    -... |.  .-+.++..+|  .+++..
T Consensus       496 ----------------r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~  559 (894)
T COG2909         496 ----------------RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE  559 (894)
T ss_pred             ----------------hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                            123678899999999999999999999998833    2223 33  3478889999  444444


Q ss_pred             HHHHHHH
Q 024858          177 SVLEDVL  183 (261)
Q Consensus       177 ~~~~~~l  183 (261)
                      ..+..+-
T Consensus       560 ~~~~~~~  566 (894)
T COG2909         560 KAFNLIR  566 (894)
T ss_pred             HHHHHHH
Confidence            4444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.86  E-value=10  Score=32.86  Aligned_cols=134  Identities=13%  Similarity=0.085  Sum_probs=74.7

Q ss_pred             HcCCcHHHHHHHHHHHh----cCCchh--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858           39 QLDRSEEAIEAIKSFRG----LCSKQS--QESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  111 (261)
Q Consensus        39 ~~g~~~eAi~~~~~~~~----~~P~~~--~~~~~~~L~~ly~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~  111 (261)
                      .+|+++.|...+.++-.    ..|+..  -.......|.-..+.+ ++++|+..++++.++...+....       ..+.
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~-------~~~~   77 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD-------KLSP   77 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc-------ccCC
Confidence            34555555555555432    233311  0112233555556677 88899888888888743210000       0000


Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCchh-h-hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMIDPDANK-A-CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~e---A~~~~~~al~~~P~~~~-~-~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ....+     ...++..|+.+|.+.+.++-   |..+.+.+-.-.|+.+. . ..+- ++.+.++.+++.+.+.+++..
T Consensus        78 ~~~el-----r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~-il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   78 DGSEL-----RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE-ILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             cHHHH-----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHhccCChhHHHHHHHHHHHh
Confidence            00000     12477888999988877653   44455555556677666 3 3333 333378999999999988885

It is also involved in sporulation [].

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.70  E-value=2.8  Score=36.20  Aligned_cols=62  Identities=23%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ....|+=.+|.+.++++.|..+-.+.+.++|+++. +..-|.+|..+|.+.-|+.-++..+..
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~  244 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH  244 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence            45678888999999999999999999999999998 999999999999999999999998775

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.69  E-value=1.1  Score=38.41  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL-CSKQSQESLDNVLIDLYKK   75 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~-~P~~~~~~~~~~L~~ly~~   75 (261)
                      |+.+|.+|+...|.....++.||++....|+.-+|+=.|-+++.. .|-   .....+|..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999877776643 343   2233335555555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.56  E-value=2.1  Score=43.48  Aligned_cols=34  Identities=9%  Similarity=-0.118  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      -+..-+.+|.++|+++|-+++|.-|++..|+++.
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            3566778899999999999999999999998874

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.53  E-value=11  Score=35.29  Aligned_cols=134  Identities=18%  Similarity=0.145  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858           26 VDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQ---SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN  100 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~---~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~  100 (261)
                      ...++..||.-+..+|  +...+|+.++......|.+   +...+. +..-++.-..+++-|...++++.-+..+-..+ 
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~Lq-Lg~lL~~yT~N~elAksHLekA~~i~~~ip~f-   83 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQ-LGALLLRYTKNVELAKSHLEKAWLISKSIPSF-   83 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHcccccH-
Confidence            3456777888888888  8899999999988887753   333332 12345567889999999999998874210000 


Q ss_pred             CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchhh-----hhHHHHHHHcCCHHH
Q 024858          101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQMIDPDANKA-----CNLGLCLIKRTRYNE  174 (261)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~-----~~L~~~l~~~g~~~e  174 (261)
                               ...+|         ++...|+.+|.+.. .+..|...+++|+++.-..+.|     +.|+....-..++.-
T Consensus        84 ---------ydvKf---------~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~s  145 (629)
T KOG2300|consen   84 ---------YDVKF---------QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPS  145 (629)
T ss_pred             ---------Hhhhh---------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchh
Confidence                     01111         25567888887776 8999999999999998877752     357888888889999


Q ss_pred             HHHHH
Q 024858          175 ARSVL  179 (261)
Q Consensus       175 A~~~~  179 (261)
                      |++.+
T Consensus       146 A~elL  150 (629)
T KOG2300|consen  146 ALELL  150 (629)
T ss_pred             HHHHH
Confidence            98873

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=90.40  E-value=2.7  Score=39.34  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858           48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  127 (261)
Q Consensus        48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~  127 (261)
                      .+|+.+....|.|..  ++...+....+.+-+.+-..+|.+++...                          |+++++|.
T Consensus        92 ~lyr~at~rf~~D~~--lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--------------------------p~~~dLWI  143 (568)
T KOG2396|consen   92 FLYRRATNRFNGDVK--LWLSYIAFCKKKKTYGEVKKIFAAMLAKH--------------------------PNNPDLWI  143 (568)
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCCchhHH
Confidence            467788877776432  22223334455555888888888887763                          46778888


Q ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHhhCCCchh-h
Q 024858          128 NLAWAYMQKTN-FMAAEVVYQKAQMIDPDANK-A  159 (261)
Q Consensus       128 ~Lg~~~~~~g~-~~eA~~~~~~al~~~P~~~~-~  159 (261)
                      .-+...+.-+. .+-|.+.+.++|..+|+++. |
T Consensus       144 ~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw  177 (568)
T KOG2396|consen  144 YAAKWEFEINLNIESARALFLRGLRFNPDSPKLW  177 (568)
T ss_pred             hhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence            77666655555 89999999999999999987 5

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.37  E-value=2.3  Score=36.32  Aligned_cols=44  Identities=20%  Similarity=0.058  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          142 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       142 A~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |+.+|++|+.+.|++.. ++.||.+....|+.-+|+-+|-+++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~   45 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV   45 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence            67889999999999988 888999999999999999888888875

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=89.20  E-value=1.8  Score=40.85  Aligned_cols=92  Identities=14%  Similarity=-0.049  Sum_probs=54.1

Q ss_pred             CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC
Q 024858           42 RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE  121 (261)
Q Consensus        42 ~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  121 (261)
                      ....||..|.+++...|..  ..+..+-+.++.+.+=..++..+++....-                       +.++|.
T Consensus       389 ~~~~~i~~~s~a~q~~~~~--~~~l~nraa~lmkRkW~~d~~~AlrDch~A-----------------------lrln~s  443 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDA--IYLLENRAAALMKRKWRGDSYLALRDCHVA-----------------------LRLNPS  443 (758)
T ss_pred             HHHHHHHHHHHHhhhccch--hHHHHhHHHHHHhhhccccHHHHHHhHHhh-----------------------ccCChH
Confidence            4455666677777766662  122222344444443333333333322221                       233344


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      .-.+|+.|+.++.+.+++.||+.+...+....|.+..
T Consensus       444 ~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  444 IQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            5568888888888999999998888888888886654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.07  E-value=7.7  Score=37.99  Aligned_cols=109  Identities=17%  Similarity=0.016  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh-----hhcCCCcHHHHHHHHHHHHHcC
Q 024858           63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-----VSVRQETSRLLGNLAWAYMQKT  137 (261)
Q Consensus        63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-----~~l~p~~~~~~~~Lg~~~~~~g  137 (261)
                      +.+++..|+-....-.+++|.++|.+.-.....-+.+         .+...|.     ..--|++...+--+|..+...|
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecl---------y~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG  866 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECL---------YRLELFGELEVLARTLPEDSELLPVMADMFTSVG  866 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHH---------HHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc
Confidence            3455667777778888999998888754331111111         1111111     2334788888888999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCch--------------------------h-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          138 NFMAAEVVYQKAQMIDPDAN--------------------------K-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       138 ~~~eA~~~~~~al~~~P~~~--------------------------~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      .-++|...|.+-  -.|.-+                          . ...-+.-++..++.-||++.++++
T Consensus       867 MC~qAV~a~Lr~--s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  867 MCDQAVEAYLRR--SLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             hHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            999998888652  122111                          1 112344456668888888888876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.74  E-value=2.7  Score=29.21  Aligned_cols=61  Identities=13%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ..-|.-+.++++.++|+...++++...++  +-...++. |..+|...|+|.+.++.--+=+.+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~-l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGY-LIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466677999999999999999987665  22233343 778899999999999887766665

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.69  E-value=1.6  Score=38.05  Aligned_cols=58  Identities=26%  Similarity=0.205  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      .++-.+..|...|.+.+|+.+.++++.++|=+.. +.-|-.+|...|+--+|+..|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4455678899999999999999999999999988 888899999999988888877653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=88.29  E-value=8.1  Score=39.81  Aligned_cols=124  Identities=19%  Similarity=0.211  Sum_probs=71.6

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      .-+|+|+.|+..+.+   .++...+. .-+ ++   .+.|.|.+|..+|+--.+...  ..+.     ..   .+.+.  
T Consensus       891 ~~L~ry~~AL~hLs~---~~~~~~~e-~~n-~I---~kh~Ly~~aL~ly~~~~e~~k--~i~~-----~y---a~hL~--  950 (1265)
T KOG1920|consen  891 DYLKRYEDALSHLSE---CGETYFPE-CKN-YI---KKHGLYDEALALYKPDSEKQK--VIYE-----AY---ADHLR--  950 (1265)
T ss_pred             HHHHHHHHHHHHHHH---cCccccHH-HHH-HH---HhcccchhhhheeccCHHHHH--HHHH-----HH---HHHHH--
Confidence            345677777776544   33432122 222 22   678888888877765444311  0000     00   00000  


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------hCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM----------IDPDANK----ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~----------~~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                          ..--+..-|..|...|+.++|+.+|+.+..          +.++-..    ...|..-+.+++++-||..+....+
T Consensus       951 ----~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  951 ----EELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             ----HhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence                001234567788888888888888876543          2232222    2578888999999999999998877


Q ss_pred             hC
Q 024858          184 YG  185 (261)
Q Consensus       184 ~~  185 (261)
                      ..
T Consensus      1027 sd 1028 (1265)
T KOG1920|consen 1027 SD 1028 (1265)
T ss_pred             cC
Confidence            74

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.06  E-value=1.7  Score=26.56  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=21.5

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 024858           31 KDMAVVMKQLDRSEEAIEAIKSFRGLC   57 (261)
Q Consensus        31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~   57 (261)
                      ..|+..|..+|+.+.|.+.++.++.-.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            467888888888888888888888543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=87.77  E-value=13  Score=33.25  Aligned_cols=129  Identities=12%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-
Q 024858           43 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-  121 (261)
Q Consensus        43 ~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-  121 (261)
                      ..+-|+....++.++|.  -.....+|+.  .+.--..+|+.+++++|+..+..  ++  .......++....-..+.+ 
T Consensus       200 p~~RI~~A~~ALeIN~e--CA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~--yr--~sqq~qh~~~~~da~~rRDt  271 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNE--CATAYVLLAE--EEATTIVDAERLFKQALKAGETI--YR--QSQQCQHQSPQHEAQLRRDT  271 (556)
T ss_pred             cHHHHHHHHHHHhcCch--hhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHH--Hh--hHHHHhhhccchhhhhhccc
Confidence            34556666777888887  3334444543  34455678888888888763210  00  0000111111000000000 


Q ss_pred             c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch--h-hhhHHHHHHHcCCHHHHHHHH
Q 024858          122 T--SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K-ACNLGLCLIKRTRYNEARSVL  179 (261)
Q Consensus       122 ~--~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~-~~~L~~~l~~~g~~~eA~~~~  179 (261)
                      +  .-+-..|+.|-.++|+..||++.++...+-.|=..  . +-||-.++.+..-|.+...++
T Consensus       272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  12346799999999999999999999988877433  2 457777777665555544443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=87.72  E-value=27  Score=33.49  Aligned_cols=164  Identities=14%  Similarity=0.100  Sum_probs=105.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      .+..|+++....+|++.+-.=-...+.|...+.-+...|+..-|-..+..+.+.. |..+  .+...-+.+-...|+++.
T Consensus       307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~L~~a~f~e~~~n~~~  384 (577)
T KOG1258|consen  307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIHLLEARFEESNGNFDD  384 (577)
T ss_pred             hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHHHHHHHHHHhhccHHH
Confidence            4577889999999998887556778888888888888899888888777766643 4422  233334555567789999


Q ss_pred             HHHHHHHHHHhhcchhhhc-----------CcchHHHhhchhhhhh----hcCCC-cHHHHHHHHHH-HHHcCCHHHHHH
Q 024858           82 QIEMLKRKLRLIYQGEAFN-----------GKPTKTARSHGKKFQV----SVRQE-TSRLLGNLAWA-YMQKTNFMAAEV  144 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~-----------~~~~~~~~~~~~~~~~----~l~p~-~~~~~~~Lg~~-~~~~g~~~eA~~  144 (261)
                      |..+|++...-. ||..-+           |.. .....+......    ...++ .+..+.+.++. +.-.++.++|..
T Consensus       385 A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~-~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~  462 (577)
T KOG1258|consen  385 AKVILQRIESEY-PGLVEVVLRKINWERRKGNL-EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI  462 (577)
T ss_pred             HHHHHHHHHhhC-CchhhhHHHHHhHHHHhcch-hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999987764 442211           100 000000000000    01111 12233444444 356799999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRT  170 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g  170 (261)
                      .+.+++.+.|++.. +..+-.....++
T Consensus       463 ~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  463 ILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            99999999999998 766666555444

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=87.33  E-value=9.4  Score=34.95  Aligned_cols=130  Identities=15%  Similarity=0.100  Sum_probs=88.4

Q ss_pred             cCCHHHHHHHHHHHHH---c------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---cCCc-hhHHHHHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAIN---A------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG---LCSK-QSQESLDNVLIDL   72 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~---~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~---~~P~-~~~~~~~~~L~~l   72 (261)
                      .+++.+|...-...+.   .      |--.+..|+.+..++-..|+...-...+...++   +..+ .....+.|.|-..
T Consensus       139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~  218 (493)
T KOG2581|consen  139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN  218 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence            4556666655554442   1      111355677888999999997777666655443   2222 3355677888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |...+.|+.|...-.++.   .|..+.|                   .+.++.++.+|.+-.-+++|..|.+++-.|+..
T Consensus       219 yL~n~lydqa~~lvsK~~---~pe~~sn-------------------ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk  276 (493)
T KOG2581|consen  219 YLHNKLYDQADKLVSKSV---YPEAASN-------------------NEWARYLYYLGRIKAIQLDYSSALEYFLQALRK  276 (493)
T ss_pred             HhhhHHHHHHHHHhhccc---Ccccccc-------------------HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence            899999999987766632   1111111                   123567788999999999999999999999999


Q ss_pred             CCCch
Q 024858          153 DPDAN  157 (261)
Q Consensus       153 ~P~~~  157 (261)
                      .|.+.
T Consensus       277 apq~~  281 (493)
T KOG2581|consen  277 APQHA  281 (493)
T ss_pred             Ccchh
Confidence            99764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.20  E-value=3.1  Score=38.11  Aligned_cols=108  Identities=16%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCCc-hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC--CC-----
Q 024858          125 LLGNLAWAYMQKTNFMAAEVVYQKA-------QMIDPDA-NK-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IP-----  188 (261)
Q Consensus       125 ~~~~Lg~~~~~~g~~~eA~~~~~~a-------l~~~P~~-~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~--~~-----  188 (261)
                      ....|..++.-.|+|..|++...-.       ...-|.. .. .+.+|-+|+.++||.+|++.+..++.--  ..     
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            3466788899999999999987653       1112322 24 6789999999999999999999988730  11     


Q ss_pred             -CCc---chhhHHHHHHHHHHHHhcCCCCchhhhcccchhHHHHHHHHH
Q 024858          189 -GCE---DGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEE  233 (261)
Q Consensus       189 -~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~  233 (261)
                       .+.   -.+..++...+++-|.... |.+..++....+.+.+.+.+..
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~-p~~lde~i~~~lkeky~ek~~k  251 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLC-PQRLDESISSQLKEKYGEKMEK  251 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHH
Confidence             111   1354555555555555433 3234444444554555544443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.15  E-value=27  Score=38.78  Aligned_cols=160  Identities=15%  Similarity=0.123  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHH-------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858           11 AAIVLFWKAIN-------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus        11 ~A~~~~~~al~-------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +-+-.+++++-       .+....+.|...|.+-+..|+++-|-.++-.+.+..+..    +....|.++-..|+...|+
T Consensus      1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~----i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPE----IVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred             hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccch----HHHHHHHHHHhhccHHHHH
Confidence            33445555552       234578899999999999999999999888887776552    4555788889999999999


Q ss_pred             HHHHHHHHhhcchh--hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCchh-
Q 024858           84 EMLKRKLRLIYQGE--AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF--MAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        84 ~~~~~al~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~--~eA~~~~~~al~~~P~~~~-  158 (261)
                      ..+++.+..+-++.  .++..+..    .+..       -+..+..-++......|++  +.-++.|+.|.++.|.... 
T Consensus      1723 ~~Lq~~l~~~~~~~~~~~~~~p~~----~n~~-------i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQS----VNLL-------IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred             HHHHHHHHhhcccccCCccccchh----hhhh-------hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence            99999998753321  11100000    0000       0123455566666666664  4567899999999998887 


Q ss_pred             hhhHHHHHHH------------cCCHHH---HHHHHHHHHhC
Q 024858          159 ACNLGLCLIK------------RTRYNE---ARSVLEDVLYG  185 (261)
Q Consensus       159 ~~~L~~~l~~------------~g~~~e---A~~~~~~~l~~  185 (261)
                      ++.||..|.+            +|++..   ++..|.+++..
T Consensus      1792 hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~y 1833 (2382)
T KOG0890|consen 1792 HYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYY 1833 (2382)
T ss_pred             eeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHh
Confidence            8888865543            367766   66666677774

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.72  E-value=20  Score=35.61  Aligned_cols=166  Identities=16%  Similarity=0.173  Sum_probs=90.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAG----------D-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL   72 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~----------p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l   72 (261)
                      +.-|.++.|+.+|.+.-..+          | ...+++..+|.-+-..|+..+|...|-++-     ++ .    .-.++
T Consensus       848 iti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~-k----aavnm  917 (1636)
T KOG3616|consen  848 ITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DF-K----AAVNM  917 (1636)
T ss_pred             EEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hH-H----HHHHH
Confidence            34567778888887642211          1 234566678888999999999988764431     10 1    12234


Q ss_pred             HHHcCCHHHHHHHHHHHHHhh------------cchhhhc---Ccc--hHHHhhc-------hhhhh---hhcCCCcHHH
Q 024858           73 YKKCGKVEEQIEMLKRKLRLI------------YQGEAFN---GKP--TKTARSH-------GKKFQ---VSVRQETSRL  125 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~------------~~~~~~~---~~~--~~~~~~~-------~~~~~---~~l~p~~~~~  125 (261)
                      |...+-|++|..+-+.----+            --|.+-.   ++.  ...+-.+       .-.|.   +..+-..+.+
T Consensus       918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~v  997 (1636)
T KOG3616|consen  918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEV  997 (1636)
T ss_pred             hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccc
Confidence            555556655543322100000            0000000   000  0000000       00011   3445556789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhh-----HHHHHHHcC-CHHHHHHHH
Q 024858          126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN-----LGLCLIKRT-RYNEARSVL  179 (261)
Q Consensus       126 ~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~-----L~~~l~~~g-~~~eA~~~~  179 (261)
                      +..++..+...|++++|-+.|-++++++.-|..|+.     .-.-.++.| +.++|...|
T Consensus       998 hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen  998 HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred             hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence            999999999999999999999999999877765542     122233444 556655554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.16  E-value=15  Score=37.77  Aligned_cols=156  Identities=14%  Similarity=0.085  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      +.++.|..+-.+.     +.+..|..+|..-.+.|+..+||+-|-+  .-+|.+ ..    .-.++-.+.|.|++-+.++
T Consensus      1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyik--adDps~-y~----eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSN-YL----EVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHH-HH----HHHHHHHhcCcHHHHHHHH
Confidence            3455555544433     4577899999999999999999998733  345552 12    2345557899999999887


Q ss_pred             HHHHHhh-cch--hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858           87 KRKLRLI-YQG--EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  162 (261)
Q Consensus        87 ~~al~l~-~~~--~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L  162 (261)
                      .-+-+.. ++.  ........+..+- ...-....-|+.+. ....|.-+...|.|+.|.-.|.-        .+ |..|
T Consensus      1157 ~MaRkk~~E~~id~eLi~AyAkt~rl-~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~L 1226 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRL-TELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKL 1226 (1666)
T ss_pred             HHHHHhhcCccchHHHHHHHHHhchH-HHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHH
Confidence            6654431 110  0000000000000 00001234455544 35678888899999999888754        45 7889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 024858          163 GLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       163 ~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +..+...|.|..|...-+++-.
T Consensus      1227 a~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             HHHHHHHHHHHHHHHHhhhccc
Confidence            9999999999999888887654

>PF13041 PPR_2: PPR repeat family

Probab=85.91  E-value=1.8  Score=26.68  Aligned_cols=29  Identities=34%  Similarity=0.436  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ..++.+...|.+.|++++|.++|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            35677889999999999999999998875

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=85.70  E-value=25  Score=31.59  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=23.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++|-.++||..||++.++.....
T Consensus       280 RLAMCARklGrlrEA~K~~RDL~ke  304 (556)
T KOG3807|consen  280 RLAMCARKLGRLREAVKIMRDLMKE  304 (556)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            6899999999999999999998875

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.53  E-value=9.1  Score=35.60  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-------------h-h--hhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-------------K-A--CNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-------------~-~--~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      ..+.+..-.|.+..+++.+.+|+..+-.--..-.+..             + +  .-.+.+++++|++.|+..+..+++.
T Consensus        77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            3445566678888999999999998876555421111             1 1  2358899999999999999998877


Q ss_pred             C
Q 024858          185 G  185 (261)
Q Consensus       185 ~  185 (261)
                      .
T Consensus       157 ~  157 (549)
T PF07079_consen  157 R  157 (549)
T ss_pred             H
Confidence            4

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=85.41  E-value=1.6  Score=23.46  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      ++.+.+.|.+.|++++|.+.+++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            45677888999999999999998655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.33  E-value=22  Score=33.17  Aligned_cols=126  Identities=15%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             HHcCCcHHHHHHHH--HHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh---
Q 024858           38 KQLDRSEEAIEAIK--SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK---  112 (261)
Q Consensus        38 ~~~g~~~eAi~~~~--~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~---  112 (261)
                      ...|+++++...++  +.+..-|.    ..++.++..+.++|-.+.|...-+.--...           .++-..+.   
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~~----~~~~~i~~fL~~~G~~e~AL~~~~D~~~rF-----------eLAl~lg~L~~  336 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIPK----DQGQSIARFLEKKGYPELALQFVTDPDHRF-----------ELALQLGNLDI  336 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG--H----HHHHHHHHHHHHTT-HHHHHHHSS-HHHHH-----------HHHHHCT-HHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCCh----hHHHHHHHHHHHCCCHHHHHhhcCChHHHh-----------HHHHhcCCHHH
Confidence            34678888777664  22322232    245556777789999999876533311110           00111111   


Q ss_pred             hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       113 ~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+.+.-+.+++..|..||...+.+|+++-|+.+|+++=       ++..|...|.-.|+.+.=..+.+.+...
T Consensus       337 A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  337 ALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK-------DFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            11233334567899999999999999999999999852       2466777777888876666666555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=85.01  E-value=37  Score=32.46  Aligned_cols=73  Identities=8%  Similarity=0.024  Sum_probs=57.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           17 WKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        17 ~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ++-|+.+|.+.++|..|-.=+..+ .+++..+.|++.+...|..+.  .+..-+.--...++|+.-+.+|.+.|..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r--~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR--AWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            678899999999999887665554 999999999999999998432  3333344446788999999999888775

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.00  E-value=2.3  Score=25.11  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      +..||++-...++|+.|++-|+++|++.
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4568899999999999999999999984

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.92  E-value=5.4  Score=36.59  Aligned_cols=66  Identities=14%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      .|..++.-.|+|..|++.++. +++...+ .+.                .+-+-+-.+++.+|.+|+.+++|.+|++.|.
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~-l~~----------------~V~~~~is~~YyvGFaylMlrRY~DAir~f~  188 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKKG-LYT----------------KVPACHISTYYYVGFAYLMLRRYADAIRTFS  188 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccch-hhc----------------cCcchheehHHHHHHHHHHHHHHHHHHHHHH
Confidence            355778889999999988776 4442211 111                0111123478999999999999999999999


Q ss_pred             HHHh
Q 024858          148 KAQM  151 (261)
Q Consensus       148 ~al~  151 (261)
                      ..|.
T Consensus       189 ~iL~  192 (404)
T PF10255_consen  189 QILL  192 (404)
T ss_pred             HHHH
Confidence            9885

>smart00101 14_3_3 14-3-3 homologues

Probab=84.67  E-value=24  Score=30.10  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhc--chhh-h---c-
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGL-CSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIY--QGEA-F---N-  100 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~-~P~~~~~~~~~~L~~ly~~-~g~~~eA~~~~~~al~l~~--~~~~-~---~-  100 (261)
                      +..++.+.-+.+||++.+.+.++++.. +|..-...-.++|...|.. .|....+...+.. ++...  .+.. .   . 
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~~~~~~~   82 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDHVASIK   82 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchHHHHHHH
Confidence            455788888899999999999988876 5521112234555555532 3444444444333 11110  0000 0   0 


Q ss_pred             Ccch----HHHhhchhhhh---hhcCCCc--H--HHH--HHHHHHHHH-----cC-----CHHHHHHHHHHHHh-----h
Q 024858          101 GKPT----KTARSHGKKFQ---VSVRQET--S--RLL--GNLAWAYMQ-----KT-----NFMAAEVVYQKAQM-----I  152 (261)
Q Consensus       101 ~~~~----~~~~~~~~~~~---~~l~p~~--~--~~~--~~Lg~~~~~-----~g-----~~~eA~~~~~~al~-----~  152 (261)
                      ....    .+...+...+.   -.+-|+.  +  .+.  -..|..|.-     .|     -.+.|...|++|++     +
T Consensus        83 ~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L  162 (244)
T smart00101       83 EYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAEL  162 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            0000    00000111111   1222321  1  111  223444422     22     25689999999986     4


Q ss_pred             CCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858          153 DPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~  185 (261)
                      .|.+|-    ..|.+.+|.+ +++.++|..+.++++..
T Consensus       163 ~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      163 PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            577774    2455555554 59999999888887775

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.56  E-value=13  Score=31.61  Aligned_cols=90  Identities=14%  Similarity=0.075  Sum_probs=58.9

Q ss_pred             CCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858           41 DRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV  116 (261)
Q Consensus        41 g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~  116 (261)
                      +.....|++++++......    -....+...+|..|...|++++|+..|+.+....              +..+-... 
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y--------------r~egW~~l-  216 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSY--------------RREGWWSL-  216 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------HhCCcHHH-
Confidence            3444556667666554432    1123345668999999999999999999986542              11111100 


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858          117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus       117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                           ...++..|-.|+...|+.++.+.+--+.+
T Consensus       217 -----~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  217 -----LTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             -----HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                 23577888999999999988887765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=84.53  E-value=6.2  Score=40.92  Aligned_cols=137  Identities=20%  Similarity=0.133  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHcCCcHHHHH------HHHH-HHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           30 LKDMAVVMKQLDRSEEAIE------AIKS-FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~------~~~~-~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      ....|......|.+.+|.+      .+.. .-.+.|+  ....+..|+.++.+.|++++|+..-+++.-+...-.     
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~--~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~----- 1007 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE--VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL----- 1007 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh--HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-----
Confidence            3346777777888888877      4442 2334555  334566799999999999999999888877642100     


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCch---h-hhhHHHHHHHcCCHH
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-----PDAN---K-ACNLGLCLIKRTRYN  173 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~---~-~~~L~~~l~~~g~~~  173 (261)
                          ..++         |+....+.|++......++...|...+.+++.+.     |+.+   . ..|++.++...++++
T Consensus      1008 ----g~ds---------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1008 ----GKDS---------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred             ----cCCC---------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence                0011         2334577889999999999999999999998753     4444   3 468999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 024858          174 EARSVLEDVLYGR  186 (261)
Q Consensus       174 eA~~~~~~~l~~~  186 (261)
                      -|+++.+.++..+
T Consensus      1075 ~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1075 TALRYLESALAKN 1087 (1236)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999853

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.14  E-value=43  Score=32.52  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHH---cCCC-hHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCC--c--hhHHHHHHHHHHHHHHcCCHHH
Q 024858           11 AAIVLFWKAIN---AGDR-VDSALKDMAVVMK-QLDRSEEAIEAIKSFRGLCS--K--QSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus        11 ~A~~~~~~al~---~~p~-~~~al~~Lg~~~~-~~g~~~eAi~~~~~~~~~~P--~--~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      -|+.+++-+++   ..|. .+.+...+|.+|. ....+++|..++++++.+..  +  +-......+|+.+|.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            35667766663   2221 2344666888886 78999999999999987763  3  112233467889999998888 


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHhhC--CCc
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR--LLGNL-AWAYMQKTNFMAAEVVYQKAQMID--PDA  156 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~--~~~~L-g~~~~~~g~~~eA~~~~~~al~~~--P~~  156 (261)
                      |...+++.++....              .         +..+.  +..-+ ...+...+++..|+..++......  +.+
T Consensus       118 a~~~l~~~I~~~~~--------------~---------~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d  174 (608)
T PF10345_consen  118 ALKNLDKAIEDSET--------------Y---------GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD  174 (608)
T ss_pred             HHHHHHHHHHHHhc--------------c---------CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence            99999998886321              0         00111  11122 222233389999999999999876  344


Q ss_pred             hh---hh--hHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          157 NK---AC--NLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       157 ~~---~~--~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +.   .+  .-+.+....+..+++++...++..
T Consensus       175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~  207 (608)
T PF10345_consen  175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIA  207 (608)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence            43   22  236677777888889988887754

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=84.04  E-value=18  Score=34.08  Aligned_cols=67  Identities=9%  Similarity=-0.014  Sum_probs=57.4

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC-HHHHHHHHHHHHhCCC
Q 024858          121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR-YNEARSVLEDVLYGRI  187 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~-~~eA~~~~~~~l~~~~  187 (261)
                      .+...|.+-.....+.+.+.+--..|.+++..+|++++ |..-+.-..+-+. .+.|..++.+.|..++
T Consensus       103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np  171 (568)
T KOG2396|consen  103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP  171 (568)
T ss_pred             CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence            35667888777777777799999999999999999999 9988887777776 9999999999999854

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.76  E-value=2.4  Score=22.86  Aligned_cols=29  Identities=14%  Similarity=0.104  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858          137 TNFMAAEVVYQKAQMIDPDANK-ACNLGLC  165 (261)
Q Consensus       137 g~~~eA~~~~~~al~~~P~~~~-~~~L~~~  165 (261)
                      |+.+.|...|++++...|.+.. |...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            5678889999999999998887 7765543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.38  E-value=10  Score=29.35  Aligned_cols=70  Identities=10%  Similarity=0.033  Sum_probs=51.2

Q ss_pred             CChHHHHHHHHHHHHHc---CCcHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858           24 DRVDSALKDMAVVMKQL---DRSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~---g~~~eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~   94 (261)
                      .-..+..++++-++...   .+..+.|.+++..++ -.|..-.+ -...|+--+.+.|+|++|..+.+..|+..|
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe-~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~  102 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRE-CLYYLAVGHYRLKEYSKSLRYVDALLETEP  102 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchh-hhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence            33455678888888554   456778889999886 55543223 334477788999999999999999999855

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=83.38  E-value=3  Score=22.75  Aligned_cols=27  Identities=44%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ++.+...|.+.|++++|.++|++..+.
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            455778889999999999999997653

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.22  E-value=27  Score=30.48  Aligned_cols=126  Identities=16%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             cCCcHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           40 LDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        40 ~g~~~eAi~~~~~~~~~~P~--~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      ....++|+.-+.+++.+.|.  ++-..+..-...++.++|++++-.+.|++.|..+.+....|. .              
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy-S--------------  104 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY-S--------------  104 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc-c--------------
Confidence            35889999999999999986  222222334567889999999999999999986532211110 0              


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchh-hh----hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANK-AC----NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~-~~----~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                           ....+++-..-....+.+--..+|+..|..  +..|.. |+    .||..|...|.|..-..++++.-..
T Consensus       105 -----EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S  174 (440)
T KOG1464|consen  105 -----EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS  174 (440)
T ss_pred             -----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence                 011122211112233333333444444432  233444 53    5899999999998888888876654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=81.74  E-value=20  Score=27.07  Aligned_cols=36  Identities=33%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             HcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc
Q 024858           39 QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC   76 (261)
Q Consensus        39 ~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~   76 (261)
                      +.+...+.+..++.++..++.  ...+.+.|+.+|.+.
T Consensus        19 ~~~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~   54 (140)
T smart00299       19 KRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKY   54 (140)
T ss_pred             hCCcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHH
Confidence            445666666666666666543  234556666666544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=81.72  E-value=21  Score=30.90  Aligned_cols=86  Identities=17%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQMI  152 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-~~~eA~~~~~~al~~  152 (261)
                      .++|+++-|..++.|+-.+.+...     + .      ...      ...++.+|.|.-....+ ++++|...+++|.++
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~-----~-~------~~~------~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLD-----P-D------MAE------ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCC-----c-H------HHH------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            478999999999999766531000     0 0      000      13568899999999999 999999999999988


Q ss_pred             ----CC---Cch-------h-hhhHHHHHHHcCCHHHHHH
Q 024858          153 ----DP---DAN-------K-ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus       153 ----~P---~~~-------~-~~~L~~~l~~~g~~~eA~~  177 (261)
                          .+   ..+       . ...|+.+|...+.++...+
T Consensus        66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence                32   111       1 2457889988887664444

It is also involved in sporulation [].

>PF13041 PPR_2: PPR repeat family

Probab=80.96  E-value=3.5  Score=25.33  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=25.9

Q ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |+-..+..+-..|.+.|++++|.++|++....
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            44444677888899999999999999998875

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.90  E-value=8.2  Score=33.88  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=44.0

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      .+.-|...|.+.+|+++.++++.++|-+  +..+..|-.+|...|+-=+|+..|++.-+
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~--e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLS--EQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            4566788899999999999999999962  33445566777888998888888887433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=80.76  E-value=11  Score=38.35  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHc----C---CcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQL----D---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~----g---~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l   72 (261)
                      -|.++.++.|+..|+++-..-|+-   -+|.+.+|+.+..+    |   .+.+|+..+++... .|.-+-+.++.  +-+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~  561 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK--ALV  561 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH--HHH
Confidence            467889999999999999888764   46788889888543    3   35666666655432 24433444554  458


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhc
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~   94 (261)
                      |.+.|+++|-+++|.-+++..|
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~  583 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYS  583 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcC
Confidence            9999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-04

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 27/183 (14%), Positives = 66/183 (36%), Gaps = 34/183 (18%)

Query: 1   MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGL 56
           +   +  + + A   F +A++        + ++ VV  Q    + A +    A++  + +
Sbjct: 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

Query: 57  CSKQSQESLDNVLIDL---YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK 113
            ++ + +  + +L +L    +K  K  E ++  ++ L L          P + A ++   
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---------IP-QNASTYS-- 274

Query: 114 FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRY 172
                          + + +    NF  A   +  A  +  D   +   LG C+      
Sbjct: 275 --------------AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320

Query: 173 NEA 175
           +EA
Sbjct: 321 SEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 17/171 (9%), Positives = 46/171 (26%), Gaps = 20/171 (11%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
           + + + A+  ++ A          +  + +     + S+ A         +  +     +
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP-FVM 196

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
             V + +  + G+ +   +     L  I                               L
Sbjct: 197 HEVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP-----------------L 238

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
           L NL     +   +  A   +++A ++ P        +G        +  A
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 37/175 (21%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
             D EAA     +           L  ++ +  Q  R + +      AIK          
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-----LL 66

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
            E+  N L ++YK+ G+++E IE  +  LRL         KP      +           
Sbjct: 67  AEAYSN-LGNVYKERGQLQEAIEHYRHALRL---------KP-DFIDGYI---------- 105

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                 NLA A +   +   A   Y  A   +PD      +LG  L    R  EA
Sbjct: 106 ------NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 33/173 (19%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--E 63
            +  + +      AI     +  A  ++  V K+  + +EAIE    +R     +    +
Sbjct: 46  CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH---YRHALRLKPDFID 102

Query: 64  SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 123
              N L       G +E  ++     L+           P                    
Sbjct: 103 GYIN-LAAALVAAGDMEGAVQAYVSALQY---------NP-DLYCVRS------------ 139

Query: 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
               +L            A+  Y KA    P+   A  NLG     +     A
Sbjct: 140 ----DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 34/177 (19%), Positives = 52/177 (29%), Gaps = 41/177 (23%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA------IKSFRGLCSK 59
               E A   + KAI        A  ++  V         AI        +         
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP------- 200

Query: 60  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119
              ++  N L ++ K+    +  +    R L L          P   A  HG        
Sbjct: 201 NFLDAYIN-LGNVLKEARIFDRAVAAYLRALSL---------SP-NHAVVHG-------- 241

Query: 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                   NLA  Y ++     A   Y++A  + P    A CNL   L ++    EA
Sbjct: 242 --------NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 41/177 (23%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA------IKSFRGLCSK 59
           Q +   AI  F KA+        A  ++  V+K+    + A+ A      +         
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP------- 234

Query: 60  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119
                  N L  +Y + G ++  I+  +R + L         +P     ++         
Sbjct: 235 NHAVVHGN-LACVYYEQGLIDLAIDTYRRAIEL---------QP-HFPDAYC-------- 275

Query: 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                   NLA A  +K +   AE  Y  A  + P    +  NL     ++    EA
Sbjct: 276 --------NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 33/173 (19%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--E 63
           +   + AI  +  A+           ++A  +      E A++A   +            
Sbjct: 80  RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA---YVSALQYNPDLYC 136

Query: 64  SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 123
              + L +L K  G++EE      + +           +P   A +              
Sbjct: 137 VRSD-LGNLLKALGRLEEAKACYLKAIET---------QP-NFAVAWS------------ 173

Query: 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
               NL   +  +     A   ++KA  +DP+   A  NLG  L +   ++ A
Sbjct: 174 ----NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
             D E A+  +  A+     +     D+  ++K L R EEA      AI+          
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-----TQPNF 168

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
             +  N L  ++   G++   I   ++ + L          P     ++           
Sbjct: 169 AVAWSN-LGCVFNAQGEIWLAIHHFEKAVTL---------DP-NFLDAYI---------- 207

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                 NL     +   F  A   Y +A  + P+      NL     ++   + A
Sbjct: 208 ------NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
            +  + A+  + +A++          ++A V  +    + AI+    AI+          
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHF 270

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
            ++  N L +  K+ G V E  +     LRL          P   A S            
Sbjct: 271 PDAYCN-LANALKEKGSVAEAEDCYNTALRL---------CP-THADSLN---------- 309

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                 NLA    ++ N   A  +Y+KA  + P+   A  NL   L ++ +  EA
Sbjct: 310 ------NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 37/168 (22%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
           Q   + AI  + +AI        A  ++A  +K+     EA +    A++    LC   +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR----LCPTHA 305

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
            +SL+N L ++ ++ G +EE + + ++ L +          P + A +H           
Sbjct: 306 -DSLNN-LANIKREQGNIEEAVRLYRKALEV---------FP-EFAAAHS---------- 343

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK 168
                 NLA    Q+     A + Y++A  I P    A  N+G  L +
Sbjct: 344 ------NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 21/175 (12%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
            +D + A   F KA +           +A ++ +  +  E+          F        
Sbjct: 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-----PTL 377

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
            E       ++    G  +  I+      RL         +     + H     +  +  
Sbjct: 378 PEVPTF-FAEILTDRGDFDTAIKQYDIAKRL---------EE-VQEKIHVGIGPLIGKAT 426

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                 +     + +  F AA  +  KA  +DP + +A   L    ++  + +EA
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 38/179 (21%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLC 57
              ++ +   A VL  ++IN     + +   +A+ +   + S+E  +    A+     L 
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVD----LN 306

Query: 58  SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 117
            +    +  +    +Y      +   E  ++   L          P +    +       
Sbjct: 307 PEYP-PTYYH-RGQMYFILQDYKNAKEDFQKAQSL---------NP-ENVYPYI------ 348

Query: 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                      LA    ++  F  +E  + + ++  P   +        L  R  ++ A
Sbjct: 349 ----------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 31/224 (13%), Positives = 57/224 (25%), Gaps = 54/224 (24%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------------- 51
             D E  I    KA+        AL   A   + L    +A+  +               
Sbjct: 72  TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIE 131

Query: 52  --SFRGLCSKQSQESLDNV------LIDLYKKCGKVEEQIEMLKRKLRL----------- 92
               R L  +  +   +N+         +      +     +    L +           
Sbjct: 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191

Query: 93  --IYQGEAFNGKPTKT------ARSHGKKFQ-------------VSVRQETSRLLGNLAW 131
                 +A     + T      A     K                 +R+  +  L     
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251

Query: 132 AYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEA 175
            +  K N + A+V+ Q++  + P  N    L L L  +    E 
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 30/171 (17%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
                + +          +    AL    +     +   +A   ++    +    +  S 
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSY 279

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
              L          +E  +  ++ + L          P                 E    
Sbjct: 280 IF-LALTLADKENSQEFFKFFQKAVDL---------NP-----------------EYPPT 312

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
             +    Y    ++  A+  +QKAQ ++P+       L   L K+ ++ E+
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 17/184 (9%), Positives = 47/184 (25%), Gaps = 41/184 (22%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK---------S 52
           Q     +   F +       +       A ++      + AI+    A +          
Sbjct: 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416

Query: 53  FRGLC-SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 111
             G    K +  +  +          K    I++L +   L          P ++ ++  
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---------DP-RSEQAKI 466

Query: 112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTR 171
                            LA   +Q      A  +++ + ++    ++         +  +
Sbjct: 467 ----------------GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ-ATTFAEAAK 509

Query: 172 YNEA 175
             + 
Sbjct: 510 IQKR 513

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 26/185 (14%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK------ 59
                 A+  F  A++       A    A V   + +S+ A+          +K      
Sbjct: 16  AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIALKM 68

Query: 60  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119
               +       L  K GK++E  +  K+ L+           P         + Q+   
Sbjct: 69  DFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKS---------NP-SEQEEKEAESQLVKA 117

Query: 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSV 178
            E  RL  + A       ++ AA     K   +     +       C IK     +A S 
Sbjct: 118 DEMQRLR-SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176

Query: 179 LEDVL 183
           L+   
Sbjct: 177 LKAAS 181

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 35/182 (19%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI-----------KSFR 54
           + +P  AI     A         A   ++ +  QL   E ++  +           + F 
Sbjct: 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226

Query: 55  GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKF 114
                +    L     +L +  G+  +     +  ++          +P           
Sbjct: 227 HYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKT---------EP----------- 265

Query: 115 QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYN 173
             SV + T R    +   + +    + A  +  +   ++PD   A  +     +    Y+
Sbjct: 266 --SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323

Query: 174 EA 175
           EA
Sbjct: 324 EA 325

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 36/184 (19%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
           Q + E A+ L+ KA+       +A  ++A V++Q  + +EA+   K    +    +    
Sbjct: 22  QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK--EAIRISPTFADA 79

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
            + + +  K+   V+  ++   R +++          P                   +  
Sbjct: 80  YSNMGNTLKEMQDVQGALQCYTRAIQI---------NP-----------------AFADA 113

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK-------RTRYNEARS 177
             NLA  +    N   A   Y+ A  + PD   A CNL  CL           R  +  S
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173

Query: 178 VLED 181
           ++ D
Sbjct: 174 IVAD 177

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVLYGR 186
            L         +  A   Y    ++D +  +   +   C ++    + A S         
Sbjct: 57  GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116

Query: 187 IPGCEDGRTRKRAEELLLELESKQ 210
                      RA  +L  + +++
Sbjct: 117 AAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
            L +   Q   +  A+ ++Q   M+D    +    LG C      Y +A
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQA 71

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 26/185 (14%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK------ 59
                 A+  F  A++       A    A V   + +S+ A+          +K      
Sbjct: 39  AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIQLKM 91

Query: 60  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119
               +       L  K GK++E  +  K+ L+           P         + Q+   
Sbjct: 92  DFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKS---------NP-SENEEKEAQSQLIKS 140

Query: 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSV 178
            E  RL  + A       ++ AA     K   +     +       C IK     +A S 
Sbjct: 141 DEMQRLR-SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199

Query: 179 LEDVL 183
           L+   
Sbjct: 200 LKAAS 204

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 19/182 (10%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
           + +P  AI     A    +    A   ++ +  QL   E ++  ++    L        L
Sbjct: 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR--ECL-------KL 240

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG---EAFNGKPTKTARSHGKKFQVSVRQET 122
           D      +    +V++  ++++    LI  G   +A +            K + S+ + T
Sbjct: 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS------KYESVMKTEPSIAEYT 294

Query: 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLED 181
            R    +   + +    + A  V  +   ++PD   A  +     +    Y+EA    E 
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 182 VL 183
             
Sbjct: 355 AQ 356

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 38/175 (21%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
           + + E AI     A+  G  + +  K ++    ++  +   +      I+        Q 
Sbjct: 51  KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE------YYQK 104

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
             +      D+  K    E++++  + +  +          P K A              
Sbjct: 105 SLTEHR-TADILTKLRNAEKELKKAEAEAYV---------NPEK-AEEA----------- 142

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                      Y  K+++  A   Y +     P+  +   N    L K   + EA
Sbjct: 143 -----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 28/172 (16%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
             +   AI +F K               AV   +L + + A + I+++    +    +S 
Sbjct: 16  NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75

Query: 66  D-NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 124
           D      +  K G+    I+  +  +             T+                   
Sbjct: 76  DFEYYGKILMKKGQDSLAIQQYQAAVDR---------DTTR-----------------LD 109

Query: 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
           + G +   +  K NF  A    +K         K    LG        Y +A
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 30/192 (15%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
           +     AI  +  A++           +            AI+     I+      +   
Sbjct: 87  KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-----PTTTD 141

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAF----NGKPTKTARS 109
            +     L   Y    +  +      + L L        +++  A            A+ 
Sbjct: 142 PKVFYE-LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

Query: 110 HGKKF-------QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CN 161
           + +K            + E       +A+ Y    + + A+  ++    +DP   KA   
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260

Query: 162 LGLCLIKRTRYN 173
           L + L     ++
Sbjct: 261 LKMKLEHHHHHH 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 6e-07
 Identities = 46/306 (15%), Positives = 93/306 (30%), Gaps = 66/306 (21%)

Query: 4   LVQKDPEAAI-VLFWKAINAGDR-----VDSAL-KDMAVVMKQLDRSEEAIEAIKSFRGL 56
           ++ KD  +    LFW  ++  +      V+  L  +   +M  +    E  +     R  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMY 112

Query: 57  CSKQSQESLDNVLIDLYKKCGKV--EEQIEMLKRKLR-------LIYQGEAFNGKPT--- 104
             ++ +   DN +   Y     V   +    L++ L        ++  G   +GK     
Sbjct: 113 IEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 105 KTARSHGKK----FQV---SVRQETS--RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 155
               S+  +    F++   +++   S   +L  L     Q      +   +     +   
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 156 ANKACNLGLCLIKRTRYNEARSVLEDVLYGRI-----PGCEDGR----TRKRAEELLLEL 206
           + +A  L   L+K   Y     VL +V   +        C   +    TR +     L  
Sbjct: 229 SIQA-EL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSA 283

Query: 207 ESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLP-------------IFEEIS 253
            +          + L   DE    ++ ++  +   R + LP             I E I 
Sbjct: 284 ATTTHISLDHHSMTLT-PDE----VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 254 SFRDRI 259
                 
Sbjct: 339 DGLATW 344

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 34/180 (18%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 64
            +D   A      A+ +  + + A    A + + L  +++A E+ +  + L  K  S E 
Sbjct: 21  GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR--QALSIKPDSAEI 78

Query: 65  LDNVLIDLYKKCGKVEEQIEMLKRKLRL-IYQG--EAFNGKPTKTARSHGKKFQVSVRQE 121
            +N    L  +  +  E +    + L    Y     A                       
Sbjct: 79  NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL--------------------- 117

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLE 180
                 N      ++  F  AE   +++    P    A   L    +   +  +A    +
Sbjct: 118 ------NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 31/217 (14%), Positives = 60/217 (27%), Gaps = 37/217 (17%)

Query: 2   VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
           ++      E A V F KA+    +       +A+   +LD    +  AI   R       
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206

Query: 62  QES-----LDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFN--GKPTKT 106
                   L   L  + ++  +  E  ++++  L              + +    +P K 
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK- 265

Query: 107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMA-------------------AEVVYQ 147
           A    KK  +      + L   +   Y  K   +                    A    +
Sbjct: 266 AIELLKK-ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324

Query: 148 KAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 183
           KA   + +  +    L        +Y EA    +   
Sbjct: 325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 37  MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 96
           M+  +  ++  + +       +++ + ++ N+L  L    G+ E  +E L++   LI Q 
Sbjct: 25  MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84

Query: 97  EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156
            A   +                   +    GN AW Y         ++   K + +    
Sbjct: 85  HADQAEI-----------------RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127

Query: 157 NKA---------CNLGLCLIK--RTRYNEARSVLEDVL 183
           +           C  G   +K    +   A+   E  L
Sbjct: 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 27/204 (13%), Positives = 52/204 (25%), Gaps = 34/204 (16%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFR-GLCSKQSQE 63
               + AI    +AI            +A+ + ++    E   E  K     L       
Sbjct: 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247

Query: 64  SLDNVLIDLYKKCGKVEEQIEMLKRKLRL-------------IY--QGEAFNGKPTKTAR 108
            +       Y++  + ++ IE+LK+ L                Y  +             
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307

Query: 109 SHGKKFQ------------VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 156
              K  +                    R+   LA  +     +  AE  +QK    +   
Sbjct: 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367

Query: 157 NKA----CNLG-LCLIKRTRYNEA 175
                     G   L +    ++A
Sbjct: 368 VAKQLLHLRYGNFQLYQMKCEDKA 391

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 5/155 (3%)

Query: 12  AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI-KSFRGLCSKQSQESLDNVLI 70
           A+    KA  A D +      +A +    D+ EEA     K F    +  +++ L     
Sbjct: 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378

Query: 71  DLYKKCGKVEEQ-IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 129
           +      K E++ I      +++    ++   +  K       K ++S     S  L  L
Sbjct: 379 NFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVL 436

Query: 130 AWAYMQKTNFMAAEVVYQKAQMIDPD-ANKACNLG 163
           A+          A+   ++         + +   G
Sbjct: 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 32/208 (15%), Positives = 68/208 (32%), Gaps = 32/208 (15%)

Query: 3   QLVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 61
           Q +  + +   + +W  ++    + S L  ++A+  K+    ++A    K    L    +
Sbjct: 29  QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK--ELLQKAPN 86

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 121
                    ++    G+ ++ + M ++ L+L         +                   
Sbjct: 87  NVDCLEACAEMQVCRGQEKDALRMYEKILQL---------EADNL--------------A 123

Query: 122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLE 180
            +  LGN    Y+             K          A    GL  +  TRY +AR+ L+
Sbjct: 124 ANIFLGNYY--YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181

Query: 181 DVLYGRI-PGCEDGRTRKRAEELLLELE 207
            V+     P  E  +T  +   +  E+ 
Sbjct: 182 KVI--LRFPSTEAQKTLDKILRIEKEVN 207

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 64
           + D   A++LF  A+    +   A + +     + ++   AI A++  R L  K  +Q +
Sbjct: 77  EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR--RCLELKPDNQTA 134

Query: 65  LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 124
           L   L   +       +  E+L+  LR                    +    +    + R
Sbjct: 135 LMA-LAVSFTNESLQRQACEILRDWLRY-------TPAYAHLVTPAEEGAGGAGLGPSKR 186

Query: 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA---CNLGLCLIKRTRYNEA 175
           +LG+L    +  + F+  + ++  A  +DP +      C LG+       Y++A
Sbjct: 187 ILGSL----LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 25/185 (13%), Positives = 47/185 (25%), Gaps = 40/185 (21%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------SFRGLCS 58
            +    AI    + +       +AL  +AV         +A E ++       ++  L +
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170

Query: 59  KQSQESLDNVLIDLYK------KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT-ARSHG 111
              + +    L    +            E  E+    +RL          PT        
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---------DPTSIDPDVQ- 220

Query: 112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRT 170
                            L   +     +  A   +  A  + P+       LG  L    
Sbjct: 221 ---------------CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265

Query: 171 RYNEA 175
           +  EA
Sbjct: 266 QSEEA 270

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 20/160 (12%), Positives = 38/160 (23%), Gaps = 29/160 (18%)

Query: 8   DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN 67
           D    ++    A+    +   A   +A     +  +     A++  RGL           
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQ--RGLALHPGHPEAVA 61

Query: 68  VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 127
            L  +     +  E   +L++                                E   +  
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDA--------------------------APEHPGIAL 95

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCL 166
            L  A        AA   Y +A  + P+       L    
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEARSVLEDVLYGR 186
            L         +  A   Y    ++D  +     +   CL++     EA S L       
Sbjct: 60  GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119

Query: 187 IPGCEDGRTRKRAEELLLELESKQ 210
               E      R   +L  ++ K+
Sbjct: 120 ANXPEFXELSTRVSSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
           +LA+   Q   +  A  V+Q   ++D   ++    LG C     +Y+ A
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 33/215 (15%), Positives = 68/215 (31%), Gaps = 40/215 (18%)

Query: 6   QKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 59
            K  E A   + +      N      +A   +   +++K L R  EA++ I+        
Sbjct: 49  AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK------- 101

Query: 60  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV- 118
                       +Y + G  +     L  +   + +        +K    + +   V   
Sbjct: 102 ---------ASVMYVENGTPDTAAMALD-RAGKLME----PLDLSKAVHLYQQAAAVFEN 147

Query: 119 ---RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-------ANKACNLGLCLIK 168
               ++ + L+G  +   +++  F  A    QK + +  +         K     L  + 
Sbjct: 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207

Query: 169 RTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 203
           R  Y  A+  + +     IPG          E+LL
Sbjct: 208 RADYVAAQKCVRE--SYSIPGFSGSEDCAALEDLL 240

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLED 181
              +  LA  Y  K  F  A  +Y  A  +  +      + G C ++     +A+   E 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 182 VLYGRIPGCEDGRTRKRAEELLLELE 207
           V    I    D + + +A+  L  ++
Sbjct: 130 V----IQHSNDEKLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEA 175
           + A+ +  K     AEV ++   + D  + +    L      + ++ +A
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 22/171 (12%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
           + + + AI  +  A             + +   QL     A E ++S   L        L
Sbjct: 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP-LLL 478

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
           + + +  + K   ++  I   +  L L+ + ++       T                   
Sbjct: 479 NELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAAT------------------- 518

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
             NL  AY +   + AA     +  ++  +       + L  + +     A
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 32/172 (18%)

Query: 1   MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK-SFRG 55
           M  +   +   A      +          L ++ VV       + AI     A+    + 
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508

Query: 56  LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ 115
             +++   +    L   Y+K    +  I+ L + L L              A  H     
Sbjct: 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL---------ST-NDANVHT---- 554

Query: 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCL 166
                        +A  Y+ K     A     ++  I P+   A   L   L
Sbjct: 555 ------------AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 35/199 (17%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI----EAIKSFRGLCSKQS 61
           +      + +  K +                + +     +      + +         + 
Sbjct: 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-----PEK 372

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAF--NGKPTK------ 105
             +    +   Y    K+ E      +   +        I    +F   G+  +      
Sbjct: 373 AVTW-LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431

Query: 106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGL 164
           TA          + Q T      L   +MQ  N + A    Q +  +   D      LG+
Sbjct: 432 TA--------ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483

Query: 165 CLIKRTRYNEARSVLEDVL 183
               ++    A +  ++ L
Sbjct: 484 VAFNKSDMQTAINHFQNAL 502

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 183
            LA  +++  N   A  ++++    DPD      +LG    +  R ++A       +
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 41/186 (22%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
           + + E A V   KA+        A   +AVV +     + A E    A+         ++
Sbjct: 50  RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA-----SDSRN 104

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL-IYQG--EAFNGKPTKTARSHGKKFQVSV 118
              L+N       +  + EE  + L    +  +Y      F                   
Sbjct: 105 ARVLNN-YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE------------------ 145

Query: 119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARS 177
                    NL    +Q      A+  ++K+  ++ +       +   L K   Y  AR 
Sbjct: 146 ---------NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 178 VLEDVL 183
             +   
Sbjct: 197 YYDLFA 202

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 25/185 (13%), Positives = 50/185 (27%), Gaps = 56/185 (30%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSF-------- 53
           + +P+ A   + KA+ +  R    L +    + +  R EEA +    A +          
Sbjct: 84  EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143

Query: 54  ---RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 110
               GL                  +  K  +  E  ++ LRL            +     
Sbjct: 144 FENLGLV---------------SLQMKKPAQAKEYFEKSLRL---------NRNQ-PSVA 178

Query: 111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRT 170
                             +A    ++  ++ A   Y           ++  LG+ L K  
Sbjct: 179 L----------------EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222

Query: 171 RYNEA 175
              + 
Sbjct: 223 EDRDT 227

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPD-ANKACNLGLCLIKRTRYNEA----RSVLEDV 182
            LA  +  +     A+  Y+KA   D   A    N G  L ++ RY EA        +D 
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 183 LY 184
           LY
Sbjct: 136 LY 137

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 30/196 (15%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------------S 52
            +    AI+    A     +  +    +AV       +  A+ +++             S
Sbjct: 68  NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127

Query: 53  FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFN--GK 102
                     +         +    +  E   +L   L +           G  +N    
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187

Query: 103 PTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA- 159
               A +     +  V +R + ++L   L            A   Y +A  I+P   +  
Sbjct: 188 YDSAAAN----LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243

Query: 160 CNLGLCLIKRTRYNEA 175
            N+ +     ++Y+ A
Sbjct: 244 YNMAVSYSNMSQYDLA 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/172 (10%), Positives = 48/172 (27%), Gaps = 16/172 (9%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 64
             +   A + F     A    + A + + +   + ++   AI A+          +    
Sbjct: 34  LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN--HARMLDPKDIAV 91

Query: 65  LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 124
               L   +         +  L+  L           +P +  +      Q         
Sbjct: 92  HAA-LAVSHTNEHNANAALASLRAWLLS---------QP-QYEQLGSVNLQAD-VDIDDL 139

Query: 125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
            + +  + +     +     +   A  ++P+  +   +LG+       Y+ A
Sbjct: 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 26/196 (13%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-KQSQES 64
                 A VL  KA+     +  A   +  V  +      A          C  K S ++
Sbjct: 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN 175

Query: 65  LDNVLIDL-----YKKCGKVEEQIEMLKRKLRL--------IYQGEAFNGKPTKTARSHG 111
           L  VL  L      +    V + +   K  +++           G A+      T ++  
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235

Query: 112 KKFQV-----------SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA- 159
              Q                    L  N A  +  + ++  A   + +A  +DP   +  
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 160 CNLGLCLIKRTRYNEA 175
                 L   +R    
Sbjct: 296 QREQQLLEFLSRLTSL 311

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVLYGR 186
            L   Y +   F AA    + A   DP  + A   LG  L  +     AR   E  L   
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL--A 81

Query: 187 I-PGCEDGRTRKRAEELLLELESKQPPP 213
                 D +  K  +  L  L  +    
Sbjct: 82  AAQSRGDQQVVKELQVFLRRLAREDALE 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 183
           +L     +      A +    A+M+DP        L +        N A + L   L
Sbjct: 56  SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 46/201 (22%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 61
           + D       F KA+       S       +   L   ++A +    A +        ++
Sbjct: 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE-----LDPEN 337

Query: 62  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFNGKPTKTARSHGKK 113
                  L  L  +  K ++   +     R          +  E    K           
Sbjct: 338 IFPYIQ-LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK---------ND 387

Query: 114 FQ---------VSVRQETSRLLGNLAWAYMQKT---------NFMAAEVVYQKAQMIDPD 155
           F          + +  +   +   +A    + T         NF+ A  + +KA  +DP 
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 156 ANKA-CNLGLCLIKRTRYNEA 175
           + +A   L    +++   +EA
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEA 468

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 183
            L   +     +  AE V        P+         + L    RY +   +L  ++
Sbjct: 32  GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 25/175 (14%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 64
           + D    I+    AI        A + + +   + +  + AI A++  R L  +  + ++
Sbjct: 78  EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ--RCLELQPNNLKA 135

Query: 65  LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ-GEAFNGKPTKTARSHGKKFQVSVRQETS 123
           L   L   Y      ++  E LK  ++   +       K                   + 
Sbjct: 136 LMA-LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG-----------------SP 177

Query: 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA---CNLGLCLIKRTRYNEA 175
            L   ++ + +  +     + +Y +A   + D         LG+       +N A
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 23/174 (13%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
            ++ +AAIV   + +        AL  +AV        ++A EA+K    +      + L
Sbjct: 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK--NWIKQNPKYKYL 169

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLI--YQGEAFNGKPTKT-ARSHGKKFQVSVRQET 122
                       ++ +          +   Y  EA +                       
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL-EAAHQNGDMIDPDLQT----------- 217

Query: 123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                 L   +     F  A   +  A  + P+       LG  L    R  EA
Sbjct: 218 -----GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 30/200 (15%), Positives = 64/200 (32%), Gaps = 37/200 (18%)

Query: 1   MVQLVQKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIE----AI 50
           M +  QK+   AI  + +A        D ++ A     +A     + ++  ++     A+
Sbjct: 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168

Query: 51  KSFRGLCSKQSQESL-DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 109
             ++       +      V+   Y      ++ +  L+  L L              A  
Sbjct: 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL--------------AMD 214

Query: 110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA------CNLG 163
                     +  +  L N+A +Y +  +   A   +QKA  +  +            L 
Sbjct: 215 IQND------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268

Query: 164 LCLIKRTRYNEARSVLEDVL 183
             L K  +  +A   +E+ L
Sbjct: 269 WTLCKAGQTQKAFQFIEEGL 288

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 29/180 (16%)

Query: 6   QKDPEAAIVLFWKAIN----AGDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFRG 55
            K  + A+     A+       +      +L ++A    +    + A+E    A K  R 
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

Query: 56  LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ 115
                  + L   L     K G+ ++  + ++  L  I                      
Sbjct: 255 KVPDLLPKVLFG-LSWTLCKAGQTQKAFQFIEEGLDHI------------------TARS 295

Query: 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEA 175
               +E    L  +    + +         ++K  +       A +          + +A
Sbjct: 296 HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 24/201 (11%), Positives = 68/201 (33%), Gaps = 38/201 (18%)

Query: 1   MVQLVQKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIE----AI 50
           M +L Q++  +AI  F KA        DR++ A     M+     + ++  +++    A 
Sbjct: 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170

Query: 51  KSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 109
           + ++   +   +     ++    +    + E+ I   ++   +              A +
Sbjct: 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--------------AEA 216

Query: 110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-------CNL 162
             +   +       R L N+      ++ +  A   +++A  +  ++N           +
Sbjct: 217 EKQPQLMG------RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270

Query: 163 GLCLIKRTRYNEARSVLEDVL 183
                K  + ++A       +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGM 291

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 59/186 (31%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK---------S 52
             D E A   F KAI           + A ++  ++  E A+     A++          
Sbjct: 36  FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 53  FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI--YQGEAFNGKPTKTARSH 110
             G                 Y      +E  +M ++ LR      G+ F           
Sbjct: 96  GAGNV---------------YVVKEMYKEAKDMFEKALRAGMEN-GDLFY---------- 129

Query: 111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKR 169
                             L    ++      A    Q+A  ++ +  +A    G+CL   
Sbjct: 130 -----------------MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE 172

Query: 170 TRYNEA 175
              +EA
Sbjct: 173 GMLDEA 178

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 43/183 (23%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK---------S 52
               +AA+ LF +A+    +   AL  +A    +L     A+E     +           
Sbjct: 18  LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77

Query: 53  FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 112
                       L     D  +  G +E+ + +LK   R+          P + A  H  
Sbjct: 78  VLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERV---------NP-RYAPLHL- 122

Query: 113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRY 172
                               Y        AE   ++A  ++        L    +   R 
Sbjct: 123 ---------------QRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRL 167

Query: 173 NEA 175
           +EA
Sbjct: 168 DEA 170

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 19/177 (10%), Positives = 41/177 (23%), Gaps = 41/177 (23%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA------IKSFRGLCSK 59
                 A++L  +  +A          + +   +    +   E                 
Sbjct: 21  AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP------- 73

Query: 60  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 119
            + +     L   Y +  K +  + +L +              P                
Sbjct: 74  DNVKVATV-LGLTYVQVQKYDLAVPLLIKVAEA---------NP-INFNVRF-------- 114

Query: 120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
                    L  A      F  A   ++ A  + P+  K    +     +  R+ EA
Sbjct: 115 --------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 35/143 (24%)

Query: 64  SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 123
           + +N L   Y K GK ++   + K  L   ++            R  G         E  
Sbjct: 197 TKNN-LASCYLKQGKFKQAETLYKEILTRAHE------------REFGSV-----DDENK 238

Query: 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PD-ANKACNLGLCLIKRTRYNEAR 176
            +  +       K          +            P       NLG    ++ ++  A 
Sbjct: 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298

Query: 177 SVLEDVLYGRIPGCEDGRTRKRA 199
           ++ E  +          R+RK+ 
Sbjct: 299 TLEEAAM----------RSRKQG 311

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 15/133 (11%), Positives = 34/133 (25%), Gaps = 31/133 (23%)

Query: 64  SLDNVLIDLYKKCGKVEEQIEMLKR---KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 120
           + +N L   Y K GK ++   + K    +      G             +G         
Sbjct: 171 TKNN-LASCYLKQGKYQDAETLYKEILTRAHEKEFGSV-----------NG--------- 209

Query: 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PD-ANKACNLGLCLIKRTRYN 173
           +   +  +       K     +    +            P       +LG    ++ +  
Sbjct: 210 DNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLE 269

Query: 174 EARSVLEDVLYGR 186
            A ++ +     R
Sbjct: 270 AAHTLEDCASRNR 282

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 33/173 (19%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--E 63
            +  +  + +  +A     +   A+       + L+  +  +  +    GL  +Q     
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348

Query: 64  SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 123
           S D     L      V+  + +L +   L          P                 E  
Sbjct: 349 SHDGGKQAL----ETVQRLLPVLCQAHGL---------TP-----------------EQV 378

Query: 124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
             + +                V  +A  + P+   A  +              
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRL 431

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 20/189 (10%), Positives = 50/189 (26%), Gaps = 15/189 (7%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
            +  +A + +  +A         A+       + L+  +  +  +    GL  +Q   ++
Sbjct: 153 LETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-VVAI 211

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLI-YQGEAFNGKPTKTARSHGKKFQ--------- 115
            +      +    V+  + +L +   L   Q  A         +   +  Q         
Sbjct: 212 AS-NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN--GGGKQALETVQRLLPVLCQA 268

Query: 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNE 174
             +  +    + + +              V  +A  + P    A  + G           
Sbjct: 269 HGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 328

Query: 175 ARSVLEDVL 183
              VL    
Sbjct: 329 LLPVLCQAH 337

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 14/171 (8%), Positives = 41/171 (23%), Gaps = 29/171 (16%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
            +  +  + +  +A     +   A+       + L+  +  +  +    GL + +   ++
Sbjct: 85  LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TPEQVVAI 143

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
            +      +    V+  + +L +   L                            E    
Sbjct: 144 AS-HDGGKQALETVQALLPVLCQAHGL--------------------------TPEQVVA 176

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 175
           + +                V  +A  + P    A  + G            
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 5   VQKDPEAAIVLFWKAIN----AGDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFR 54
           V++    A+  + + +      GDR     A  ++      L   + AIE     ++  R
Sbjct: 195 VKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254

Query: 55  GLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK 113
               + ++  +  N L + +   G+ E+  E  KR L L              A   G+ 
Sbjct: 255 EFGDRAAERRANSN-LGNSHIFLGQFEDAAEHYKRTLAL--------------AVELGE- 298

Query: 114 FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PDANKAC-NLGLCL 166
                R+  ++   +L   Y     F  A   + +   I           +AC +LG   
Sbjct: 299 -----REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353

Query: 167 IKRTRYNEARSVLE 180
                +  A    E
Sbjct: 354 SAIGGHERALKYAE 367

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 32/185 (17%)

Query: 1   MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60
            +    ++P+AA+    +  +        +     ++ +LDR + A + +K  +      
Sbjct: 109 SIYFYDQNPDAALRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163

Query: 61  SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 120
           +   L    + L     K+++   + +                                 
Sbjct: 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------------------------CS 197

Query: 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEARSVL 179
            T  LL   A  +M +  + AAE V Q+A   D        NL +      +  E  +  
Sbjct: 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257

Query: 180 EDVLY 184
              L 
Sbjct: 258 LSQLK 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.87
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.85
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.83
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.81
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.8
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.8
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.78
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.75
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.74
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.73
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.72
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.7
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.69
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.69
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.69
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.68
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.68
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.66
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.66
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.65
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.62
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.61
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.58
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.57
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.57
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.56
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.55
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.53
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.45
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.45
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.45
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.41
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.41
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.4
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.39
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.36
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.3
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.28
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.28
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.18
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.16
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.09
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.03
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.02
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.98
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.94
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.91
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.66
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.63
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.58
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.53
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.52
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.35
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.3
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.12
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.56
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.44
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.36
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.3
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.21
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.11
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.08
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.58
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.19
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.97
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.97
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.48
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.47
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.37
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.34
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.29
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.16
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.97
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.89
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.74
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.11
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.96
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.93
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.85
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.01
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.32
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.41
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	90.22
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.12
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.0
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.94
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	86.4
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.61

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=4.4e-24  Score=176.84  Aligned_cols=155  Identities=20%  Similarity=0.151  Sum_probs=144.8

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-----
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-----   76 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-----   76 (261)
                      +.+..|++++|+..|+++++.+|+++.++.++|.++.++|++++|+..++++++++|+++  .....+|.+|...     
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~   91 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLSEAYVALYRQAE   91 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHTCS
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhhhhhh
Confidence            356789999999999999999999999999999999999999999999999999999953  4566799999999     


Q ss_pred             ------CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           77 ------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        77 ------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                            |++++|+..|++++++.                          |+++.++.++|.+|..+|++++|+..|++++
T Consensus        92 ~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  145 (217)
T 2pl2_A           92 DRERGKGYLEQALSVLKDAERVN--------------------------PRYAPLHLQRGLVYALLGERDKAEASLKQAL  145 (217)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhcccccCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                  99999999999999974                          4678899999999999999999999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++ +++. +.++|.+|..+|++++|+..|++++..
T Consensus       146 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          146 ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999 8888 999999999999999999999999997

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=1.2e-23  Score=168.32  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=145.0

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +....|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++...|+++  .....+|.++...+++++
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   91 (184)
T 3vtx_A           14 KKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYILGSANFMIDEKQA   91 (184)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHHHHHHHHcCCHHH
Confidence            346789999999999999999999999999999999999999999999999999999853  355668999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |+..+++++++.                          |+++.++..+|.+|..+|++++|+..|+++++++|+++. +.
T Consensus        92 a~~~~~~a~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  145 (184)
T 3vtx_A           92 AIDALQRAIALN--------------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ  145 (184)
T ss_dssp             HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence            999999998874                          457789999999999999999999999999999999999 99


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|.+|..+|++++|+..|++++..
T Consensus       146 ~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          146 SIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            9999999999999999999999997

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=1.6e-23  Score=202.41  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=146.5

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +....|++++|+.+|++|++++|+++.++.+||.+|.++|++++|++.|+++++++|+++  ..++.||.+|.++|++++
T Consensus        18 ~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~nLg~~l~~~g~~~~   95 (723)
T 4gyw_A           18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSNMGNTLKEMQDVQG   95 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHH
Confidence            456789999999999999999999999999999999999999999999999999999953  456679999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |++.|+++++++                          |++++++.+||.+|..+|++++|+..|++|++++|++.. +.
T Consensus        96 A~~~~~kAl~l~--------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~  149 (723)
T 4gyw_A           96 ALQCYTRAIQIN--------------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC  149 (723)
T ss_dssp             HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence            999999999974                          467889999999999999999999999999999999999 99


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +||.+|..+|++++|++.|++++..
T Consensus       150 ~L~~~l~~~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          150 NLAHCLQIVCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             hhhhHHHhcccHHHHHHHHHHHHHh
Confidence            9999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=3.1e-23  Score=171.67  Aligned_cols=154  Identities=18%  Similarity=0.093  Sum_probs=128.7

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----------DRSEEAIEAIKSFRGLCSKQSQESLDNVLI   70 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-----------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~   70 (261)
                      +....|++++|+..|+++++.+|+++.++.++|.++..+           |++++|+..++++++++|+++  .....+|
T Consensus        48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~lg  125 (217)
T 2pl2_A           48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA--PLHLQRG  125 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH--HHHHHHH
Confidence            356789999999999999999999999999999999999           999999999999999999953  4566799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .+|...|++++|+..|++++++.                           +++.++.++|.+|..+|++++|+..|++++
T Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  178 (217)
T 2pl2_A          126 LVYALLGERDKAEASLKQALALE---------------------------DTPEIRSALAELYLSMGRLDEALAQYAKAL  178 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcc---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999972                           256789999999999999999999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +++|+++. +.++|.++..+|++++|+..|+++-.
T Consensus       179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999 99999999999999999999988654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=8e-22  Score=163.02  Aligned_cols=178  Identities=11%  Similarity=0.070  Sum_probs=150.8

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p-~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      +.+..|++++|+..|.+++..+| .+..++.++|.++..+|++++|+..+++++..+|++  ......+|.+|...|+++
T Consensus        16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~   93 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKSAAYRDMKNNQ   93 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHcccHH
Confidence            35678999999999999999998 888999999999999999999999999999999994  446667999999999999


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--chh
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD--ANK  158 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~  158 (261)
                      +|+..|++++++.|....+.                   +....++.++|.++..+|++++|+..|+++++++|+  +..
T Consensus        94 ~A~~~~~~al~~~p~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  154 (228)
T 4i17_A           94 EYIATLTEGIKAVPGNATIE-------------------KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD  154 (228)
T ss_dssp             HHHHHHHHHHHHSTTCHHHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcHHHH-------------------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence            99999999999865211000                   001257999999999999999999999999999999  888


Q ss_pred             -hhhHHHHHHHcCCH---------------------------HHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Q 024858          159 -ACNLGLCLIKRTRY---------------------------NEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  207 (261)
Q Consensus       159 -~~~L~~~l~~~g~~---------------------------~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~  207 (261)
                       +.++|.++..+|+.                           ++|+.+|++++..   +|.+..    +..++..+.
T Consensus       155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l---~p~~~~----~~~~l~~i~  224 (228)
T 4i17_A          155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL---SPNRTE----IKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHH----HHHHHHHHH
Confidence             99999999999998                           8899999999997   444433    555555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.89  E-value=7.1e-22  Score=175.52  Aligned_cols=179  Identities=16%  Similarity=0.115  Sum_probs=89.1

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+..  .....+|.+|...|++++|+
T Consensus        78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~  155 (388)
T 1w3b_A           78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--CVRSDLGNLLKALGRLEEAK  155 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--HHHHHHHHHHHTTSCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHccCHHHHH
Confidence            3455666666666666666666666666666666666666666666666666666532  23344566666666666666


Q ss_pred             HHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           84 EMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        84 ~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      +.|+++++..|... ++.. ........+.      .+.  +.+.|++..++.++|.++...|++++|+..|++++.++|
T Consensus       156 ~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  234 (388)
T 1w3b_A          156 ACYLKAIETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP  234 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            66666666543211 1100 0000000000      011  234444444455555555555555555555555555555


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.. +.++|.++..+|++++|+..|++++..
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4444 444555555555555555555555444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=3.9e-21  Score=169.19  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=153.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++  .....+|.+|...|++++|
T Consensus        75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A  152 (365)
T 4eqf_A           75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALAVSYTNTSHQQDA  152 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHccccHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCc---------chHHHhhchh------hhh--hhcCCC--cHHHHHHHHHHHHHcCCHHHH
Q 024858           83 IEMLKRKLRLIYQGE-AFNGK---------PTKTARSHGK------KFQ--VSVRQE--TSRLLGNLAWAYMQKTNFMAA  142 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~---------~~~~~~~~~~------~~~--~~l~p~--~~~~~~~Lg~~~~~~g~~~eA  142 (261)
                      +..|++++++.|... .....         ........+.      .+.  +.+.|+  ++.++.++|.+|..+|++++|
T Consensus       153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A  232 (365)
T 4eqf_A          153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA  232 (365)
T ss_dssp             HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999866432 11100         0001111111      111  577898  899999999999999999999


Q ss_pred             HHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          143 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       143 ~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      +..|+++++++|+++. +.++|.++..+|++++|+..|++++...
T Consensus       233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            9999999999999999 9999999999999999999999999973

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=1.9e-21  Score=172.70  Aligned_cols=230  Identities=17%  Similarity=0.105  Sum_probs=125.7

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +..|++++|+..|.+++..+|+++.++..+|.++.+.|++++|+..++.+++.+|.++  ..+..+|.+|.+.|++++|+
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~--~~~~~lg~~~~~~g~~~~A~   87 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA--EAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHCCCHHHHH
Confidence            3456666666666666666666665665666666666666666666666655555532  23444555556666666666


Q ss_pred             HHHHHHHHhhcchh-hhc---------Ccch------------------------HHHhhchh------hhh--hhcCCC
Q 024858           84 EMLKRKLRLIYQGE-AFN---------GKPT------------------------KTARSHGK------KFQ--VSVRQE  121 (261)
Q Consensus        84 ~~~~~al~l~~~~~-~~~---------~~~~------------------------~~~~~~~~------~~~--~~l~p~  121 (261)
                      ..|++++++.|... ++.         |...                        ......++      .+.  +.+.|+
T Consensus        88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  167 (388)
T 1w3b_A           88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN  167 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            66666555543221 110         0000                        00000000      011  355677


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---------
Q 024858          122 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---------  191 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~---------  191 (261)
                      ++.++.++|.+|..+|++++|+..|+++++++|++.. +.++|.++...|++++|+..|++++..++..+.         
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  247 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence            7777777777777777777777777777777777776 677777777777777777777777765321110         


Q ss_pred             -chhhHHHHHHHHHHHHhcCC-CCchhhhcccch-----hHHHHHHHHHHH
Q 024858          192 -DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMV  235 (261)
Q Consensus       192 -~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l  235 (261)
                       ..+.++.|.+.+.......| .+.+...+|..+     +++..+.|+..+
T Consensus       248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  298 (388)
T 1w3b_A          248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             13444556666655443333 344444444443     355555555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.88  E-value=7.1e-22  Score=177.84  Aligned_cols=156  Identities=12%  Similarity=0.004  Sum_probs=142.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ....|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+..+++++.++|+++  .+++.+|.+|...|++++
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~~~~~g~~~e  184 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVLVEWLRDPSQ  184 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTT
T ss_pred             HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHccCHHH
Confidence            3456899999999999999999999999999999999997 9999999999999999953  456668999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |+..|+++|+++                          |++..+|.++|+++..+|++++|+..|+++++++|++.. |+
T Consensus       185 Al~~~~kal~ld--------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~  238 (382)
T 2h6f_A          185 ELEFIADILNQD--------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN  238 (382)
T ss_dssp             HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhC--------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999974                          467889999999999999999999999999999999999 99


Q ss_pred             hHHHHHHH-cCCHHHH-----HHHHHHHHhCC
Q 024858          161 NLGLCLIK-RTRYNEA-----RSVLEDVLYGR  186 (261)
Q Consensus       161 ~L~~~l~~-~g~~~eA-----~~~~~~~l~~~  186 (261)
                      ++|.+|.. .|++++|     +..|++++..+
T Consensus       239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~  270 (382)
T 2h6f_A          239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  270 (382)
T ss_dssp             HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence            99999999 5665888     59999999973

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.87  E-value=2.6e-21  Score=187.03  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=128.0

Q ss_pred             cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      ..|++++++++||.++.++|++++|++.|+++++++|+++  ..++.||.+|.++|++++|++.|+++++++        
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--------   73 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRIS--------   73 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence            4699999999999999999999999999999999999953  456679999999999999999999999974        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE  180 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~  180 (261)
                                        |++++++.|||.+|..+|++++|++.|++|++++|++.. +.+||.+|..+|++++|+..|+
T Consensus        74 ------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~  135 (723)
T 4gyw_A           74 ------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR  135 (723)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                              567899999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHhCC
Q 024858          181 DVLYGR  186 (261)
Q Consensus       181 ~~l~~~  186 (261)
                      +++..+
T Consensus       136 ~Al~l~  141 (723)
T 4gyw_A          136 TALKLK  141 (723)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999983

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=2.3e-21  Score=159.35  Aligned_cols=155  Identities=16%  Similarity=0.118  Sum_probs=134.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKD----------------MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD   66 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~----------------Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~   66 (261)
                      .+..|++++|+.+|++++..+|+++.++..                +|.++..+|++++|+..|+++++++|+++  ...
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~   91 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV--DCL   91 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHH
Confidence            467899999999999999999999999999                99999999999999999999999999953  456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC--HHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--FMAAEV  144 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~--~~eA~~  144 (261)
                      ..+|.+|...|++++|+..|++++++.                          |+++.++.++|.+|..+|+  ..++..
T Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           92 EACAEMQVCRGQEKDALRMYEKILQLE--------------------------ADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            679999999999999999999999974                          5678899999999977754  566788


Q ss_pred             HHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++++..+|....++++|.++...|++++|+..|++++..
T Consensus       146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            88888754443333788999999999999999999999998

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.86  E-value=1.2e-21  Score=153.22  Aligned_cols=142  Identities=12%  Similarity=0.022  Sum_probs=117.0

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +....|++++|+..|++++..+|+.+.+++.+|.+|.++|++++|+..|+++++++|+++  ..+..+|.+|...|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCchHH
Confidence            345567888899999999888888888888899999999999999999999999988853  456668888999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCchh-h
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV-YQKAQMIDPDANK-A  159 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~-~~~al~~~P~~~~-~  159 (261)
                      |+..|+++++++                          |++++++.++|.+|..+|++++|... +++|++++|+++. +
T Consensus        84 A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A           84 AVECYRRSVELN--------------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence            999999988874                          46778888999999999988877765 4889999998888 6


Q ss_pred             hhHHHHHHHcCC
Q 024858          160 CNLGLCLIKRTR  171 (261)
Q Consensus       160 ~~L~~~l~~~g~  171 (261)
                      ...+.++..+|+
T Consensus       138 ~l~~~ll~~~G~  149 (150)
T 4ga2_A          138 KLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCc
Confidence            667888877775

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=1.2e-19  Score=159.06  Aligned_cols=181  Identities=16%  Similarity=0.118  Sum_probs=154.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++  .....+|.+|...|++++|
T Consensus        74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A  151 (368)
T 1fch_A           74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQA  151 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcC----------------cchHHHhhchh------hhh--hhcCCC--cHHHHHHHHHHHHHc
Q 024858           83 IEMLKRKLRLIYQGEAFNG----------------KPTKTARSHGK------KFQ--VSVRQE--TSRLLGNLAWAYMQK  136 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~----------------~~~~~~~~~~~------~~~--~~l~p~--~~~~~~~Lg~~~~~~  136 (261)
                      +..|++++++.|.......                ...... ..+.      .+.  +.+.|+  .+.++.++|.+|..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~  230 (368)
T 1fch_A          152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS  230 (368)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence            9999999998764321110                011111 1111      111  577888  899999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          137 TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       137 g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      |++++|+..|++++.++|+++. +.++|.++...|++++|+..|++++...
T Consensus       231 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999998 9999999999999999999999999973

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.86  E-value=8.9e-21  Score=174.88  Aligned_cols=176  Identities=15%  Similarity=0.052  Sum_probs=119.6

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS-EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~-~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      +.+++++..+..+...+|..+.++..+|.++...|++ ++|+..|+++++++|+++  ..++.+|.+|...|++++|+..
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV--EAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Confidence            3455566666665566666666666666666666666 666666666666666532  2344466666666666666666


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhc---------hh------hhh--hhcCCCcHHHHHHHHHHHHHc--------CCHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSH---------GK------KFQ--VSVRQETSRLLGNLAWAYMQK--------TNFM  140 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~---------~~------~~~--~~l~p~~~~~~~~Lg~~~~~~--------g~~~  140 (261)
                      |++++++.|...++.+ ........         +.      .+.  +.+.|+++.++.+||.+|..+        |+++
T Consensus       160 ~~~al~~~p~~~~~~~-lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          160 FSGALTHCKNKVSLQN-LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHHHTTCCCHHHHHH-HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHhhCCCHHHHHH-HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            6666665543211110 00000000         00      111  455678899999999999999        9999


Q ss_pred             HHHHHHHHHHhhCC---Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          141 AAEVVYQKAQMIDP---DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       141 eA~~~~~~al~~~P---~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|+..|+++++++|   +++. ++++|.+|..+|++++|+..|++++..
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999   8888 999999999999999999999999998

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1.3e-19  Score=157.15  Aligned_cols=181  Identities=15%  Similarity=0.060  Sum_probs=145.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|
T Consensus        13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A   90 (359)
T 3ieg_A           13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT--AARLQRGHLLLKQGKLDEA   90 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHcCChHHH
Confidence            46789999999999999999999999999999999999999999999999999999843  4566789999999999999


Q ss_pred             HHHHHHHHHhhc---chh-hhcCc--c---------hHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCH
Q 024858           83 IEMLKRKLRLIY---QGE-AFNGK--P---------TKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNF  139 (261)
Q Consensus        83 ~~~~~~al~l~~---~~~-~~~~~--~---------~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~  139 (261)
                      +..|++++++.|   ... .+...  .         .......+.      .+.  +.+.|+++.++.++|.++..+|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (359)
T 3ieg_A           91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP  170 (359)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH
Confidence            999999999866   321 11100  0         000001110      111  467788888889999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          140 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       140 ~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|+..|++++..+|+++. +.++|.++...|++++|+..+++++..
T Consensus       171 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  217 (359)
T 3ieg_A          171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  217 (359)
T ss_dssp             HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999999999998888 888899999999999999999888886

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.8e-20  Score=152.58  Aligned_cols=178  Identities=17%  Similarity=0.129  Sum_probs=151.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--H---HHHHHHHHHHHHHcC
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--Q---ESLDNVLIDLYKKCG   77 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--~---~~~~~~L~~ly~~~g   77 (261)
                      .+..|++++|+.+|.+++..+ .++.++..+|.++...|++++|+..+++++...|+..  .   ......+|.+|...|
T Consensus        15 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (258)
T 3uq3_A           15 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG   93 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence            467899999999999999998 8899999999999999999999999999999888631  1   345677999999999


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhc--CcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFN--GKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~--~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ++++|+..|++++++.+.+..+.  +.....    ...+.  +.+.|+.+.++.++|.++..+|++++|+..|++++..+
T Consensus        94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  169 (258)
T 3uq3_A           94 DLKKTIEYYQKSLTEHRTADILTKLRNAEKE----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA  169 (258)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhcCchhHHHHHHhHHHHH----HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            99999999999999866443322  111000    01111  45778889999999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |+++. +.++|.++...|++++|+..+++++..
T Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99998 999999999999999999999999997

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.85  E-value=1.9e-19  Score=146.39  Aligned_cols=157  Identities=11%  Similarity=0.040  Sum_probs=142.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-CCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g~~~e   81 (261)
                      .+..|++++|+.+|++++..+|+.+.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|... |++++
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~~   95 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAE   95 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCcHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  3556689999999 99999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      |+..++++++ .+                       ..|+...++.++|.++..+|++++|+..|+++++.+|++.. +.
T Consensus        96 A~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  151 (225)
T 2vq2_A           96 SMAYFDKALA-DP-----------------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK  151 (225)
T ss_dssp             HHHHHHHHHT-ST-----------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHc-Cc-----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence            9999999988 22                       01345678999999999999999999999999999999998 89


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          161 NLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       161 ~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+|.++...|++++|+.++++++..
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999987

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=7.8e-20  Score=154.38  Aligned_cols=174  Identities=18%  Similarity=0.098  Sum_probs=143.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHH---
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKK---   75 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~---   75 (261)
                      .+..|++++|+..|++++...|++   +.++..+|.++..+|++++|+..|++++..+|++. .......+|.+|..   
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~  104 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP  104 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence            467899999999999999999988   99999999999999999999999999999999632 23456679999999   


Q ss_pred             -----cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           76 -----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        76 -----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                           .|++++|+..|+++++..|.......     .  ..  ....+.+.....+.++|.+|..+|++++|+..|++++
T Consensus       105 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----a--~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A          105 PYELDQTDTRKAIEAFQLFIDRYPNHELVDD-----A--TQ--KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH-----H--HH--HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHCcCchhHHH-----H--HH--HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                 99999999999999998653211000     0  00  0011122334567999999999999999999999999


Q ss_pred             hhCCCc---hh-hhhHHHHHHHc----------CCHHHHHHHHHHHHhC
Q 024858          151 MIDPDA---NK-ACNLGLCLIKR----------TRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~---~~-~~~L~~~l~~~----------g~~~eA~~~~~~~l~~  185 (261)
                      +..|++   .. ++.+|.+|..+          |++++|+..|++++..
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            999985   45 78999999977          9999999999999997

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=1.4e-20  Score=165.71  Aligned_cols=182  Identities=21%  Similarity=0.175  Sum_probs=145.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHH--------HHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES--------LDNVLIDLYK   74 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~--------~~~~L~~ly~   74 (261)
                      ....|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++++.|++....        +...++.+|.
T Consensus       109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~  188 (365)
T 4eqf_A          109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV  188 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999999999999999999742111        1123588999


Q ss_pred             HcCCHHHHHHHHHHHHHhhcc--hh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~--~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      ..|++++|+..|++++++.|.  .. .+.. ........+.      .+.  +.+.|+++.++.++|.+|..+|++++|+
T Consensus       189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  267 (365)
T 4eqf_A          189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTG-LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV  267 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCcCccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999998764  21 1111 0011111111      121  5778999999999999999999999999


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..|+++++++|++.. +.++|.+|..+|++++|+.+|++++..
T Consensus       268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999998 999999999999999999999999996

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=1e-19  Score=150.20  Aligned_cols=180  Identities=15%  Similarity=0.085  Sum_probs=124.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|++  ......++.+|...|++++|
T Consensus        33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A  110 (243)
T 2q7f_A           33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA--ATAYYGAGNVYVVKEMYKEA  110 (243)
T ss_dssp             ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHhccHHHH
Confidence            4668999999999999999999999999999999999999999999999999999984  34566689999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      +..|++++++.|... .+.. ........+      ..+.  +.+.|+++.++.++|.+|...|++++|+..|++++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          111 KDMFEKALRAGMENGDLFYM-LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHHHHHHHHTCCSHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999865321 1100 000000000      0011  34556666666777777777777777777777777777


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |++.. +..+|.++..+|++++|+..|++++..
T Consensus       190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            76666 666777777777777777777776665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.85  E-value=2.6e-19  Score=149.18  Aligned_cols=157  Identities=20%  Similarity=0.158  Sum_probs=138.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|++++..+|..+.++..+|.++...|++++|+..+++++..+|++  ......++.+|...|++++|
T Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A  124 (252)
T 2ho1_A           47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNYGGFLYEQKRYEEA  124 (252)
T ss_dssp             HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHHhHHHHH
Confidence            4567999999999999999999999999999999999999999999999999999984  34566789999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +..|+++++. +                       ..|+.+.++.++|.+|..+|++++|+..|+++++.+|++.. +..
T Consensus       125 ~~~~~~~~~~-~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  180 (252)
T 2ho1_A          125 YQRLLEASQD-T-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE  180 (252)
T ss_dssp             HHHHHHHTTC-T-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHHHhC-c-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence            9999998871 1                       12345678889999999999999999999999999999888 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|.++..+|++++|+.++++++..
T Consensus       181 la~~~~~~g~~~~A~~~~~~~~~~  204 (252)
T 2ho1_A          181 MADLLYKEREYVPARQYYDLFAQG  204 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999998886

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=1.2e-19  Score=142.85  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=143.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|..+.++..+|.++...|++++|+..+++++...|+++  .....+|.+|...|++++|
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A   95 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLTYVQVQKYDLA   95 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHH
Confidence            45679999999999999999999999999999999999999999999999999999843  3556689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +..++++++..                          |+++.++.++|.+|..+|++++|+..|++++..+|++.. +.+
T Consensus        96 ~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  149 (186)
T 3as5_A           96 VPLLIKVAEAN--------------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA  149 (186)
T ss_dssp             HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcC--------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence            99999999874                          345678999999999999999999999999999999998 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|.++..+|++++|..++++++..
T Consensus       150 la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          150 IAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc
Confidence            999999999999999999999986

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=4.9e-19  Score=152.00  Aligned_cols=203  Identities=16%  Similarity=0.113  Sum_probs=162.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A  108 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSHTNEHNANAA  108 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  3556689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhc-Cc------------------chHHHhhc--hhhhh--hhcCCCcHHHHHHHHHHHHHcCCH
Q 024858           83 IEMLKRKLRLIYQGEAFN-GK------------------PTKTARSH--GKKFQ--VSVRQETSRLLGNLAWAYMQKTNF  139 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~-~~------------------~~~~~~~~--~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~  139 (261)
                      +..|+++++..|...... ..                  ........  ...+.  +.+.|+++.++.++|.+|..+|++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  188 (327)
T 3cv0_A          109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY  188 (327)
T ss_dssp             HHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence            999999999865432111 00                  00000000  01111  567899999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHH
Q 024858          140 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELE  207 (261)
Q Consensus       140 ~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~  207 (261)
                      ++|+..|++++..+|++.. +.++|.++...|++++|+.++++++...+..+.          ..+.++.|...+....
T Consensus       189 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999999999999998 999999999999999999999999997322211          1344556666665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.3e-19  Score=150.51  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=136.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC------------------
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV-------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC------------------   57 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~-------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~------------------   57 (261)
                      ....|++++|+..|++++..+|+.       +.++..+|.++...|++++|+..+++++.+.                  
T Consensus        48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  127 (258)
T 3uq3_A           48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK  127 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence            456899999999999999988766       7899999999999999999999999999954                  


Q ss_pred             --------CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHH
Q 024858           58 --------SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL  129 (261)
Q Consensus        58 --------P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~L  129 (261)
                              |.+  ......+|.+|...|++++|+..|++++++.                          |+++.++.++
T Consensus       128 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l  179 (258)
T 3uq3_A          128 AEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNR  179 (258)
T ss_dssp             HHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHH
T ss_pred             HHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------cccHHHHHHH
Confidence                    442  2345567778888888888888888877763                          4567899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          130 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       130 g~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.+|..+|++++|+..|+++++.+|+++. +..+|.++..+|++++|+..|++++..
T Consensus       180 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 999999999999999999999999997

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=8.6e-20  Score=156.95  Aligned_cols=181  Identities=12%  Similarity=0.009  Sum_probs=142.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ....|++++|+.++++++..+|+++.++..+|.++...| ++++|+..+++++..+|+++  .....+|.+|...|++++
T Consensus        66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~  143 (330)
T 3hym_B           66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWIAYGHSFAVESEHDQ  143 (330)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHHHHHTCHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHccCHHH
Confidence            356789999999999999999999999999999999999 89999999999999998843  345568899999999999


Q ss_pred             HHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           82 QIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        82 A~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |+..|++++++.|... .+.. ........+      ..+.  +.+.|+++.++.++|.+|..+|++++|+..|++++.+
T Consensus       144 A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  222 (330)
T 3hym_B          144 AMAAYFTAAQLMKGCHLPMLY-IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK  222 (330)
T ss_dssp             HHHHHHHHHHHTTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            9999999998865421 1110 001000111      1111  5677888899999999999999999999999999988


Q ss_pred             C---------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          153 D---------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       153 ~---------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      .         |.+.. +.++|.++..+|++++|+.+|++++...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            6         55566 7889999999999999999999998873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.84  E-value=4.4e-20  Score=166.13  Aligned_cols=154  Identities=10%  Similarity=-0.005  Sum_probs=139.9

Q ss_pred             hhhcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            3 QLVQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~-~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ....|+ +++|+.+|++++..+|++..+|+++|.++..+|++++|+..|++++.++|++.  ..+..+|.+|...|++++
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~--~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY--HAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTT
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH--HHHHHHHHHHHHcCChHH
Confidence            345675 99999999999999999999999999999999999999999999999999953  455669999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCC
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAA-----EVVYQKAQMIDPD  155 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~-~g~~~eA-----~~~~~~al~~~P~  155 (261)
                      |+..|+++++++                          |++..+|+++|.+|.. .|.+++|     +.+|++++.++|+
T Consensus       219 Al~~~~~al~l~--------------------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~  272 (382)
T 2h6f_A          219 ELQYVDQLLKED--------------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  272 (382)
T ss_dssp             HHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence            999999999974                          4678899999999999 6665888     5999999999999


Q ss_pred             chh-hhhHHHHHHHcC--CHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRT--RYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g--~~~eA~~~~~~~l~~  185 (261)
                      +.. |+++|.++...|  ++++|+..++++ ..
T Consensus       273 ~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~  304 (382)
T 2h6f_A          273 NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP  304 (382)
T ss_dssp             CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT
T ss_pred             CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc
Confidence            999 999999999999  699999999997 54

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=3.9e-19  Score=152.80  Aligned_cols=229  Identities=13%  Similarity=0.059  Sum_probs=177.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-CHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-~~~e   81 (261)
                      .+..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|+++  .....+|.+|...| ++++
T Consensus        32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~  109 (330)
T 3hym_B           32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEH  109 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhHHH
Confidence            35679999999999999999999999999999999999999999999999999999854  35566899999999 9999


Q ss_pred             HHHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           82 QIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        82 A~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |+..|++++++.|... ++.. ........+      ..+.  +.+.|+...++.++|.+|..+|++++|+..|+++++.
T Consensus       110 A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  188 (330)
T 3hym_B          110 ARRYLSKATTLEKTYGPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI  188 (330)
T ss_dssp             HHHHHHHHHTTCTTCTHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCccHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9999999999865422 2110 000000111      1111  5677888999999999999999999999999999999


Q ss_pred             CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCC--------CCCc-----------chhhHHHHHHHHHHHHhc-CC
Q 024858          153 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI--------PGCE-----------DGRTRKRAEELLLELESK-QP  211 (261)
Q Consensus       153 ~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~--------~~~~-----------~~~~~~~a~~~l~~l~~~-~~  211 (261)
                      +|++.. +.++|.++..+|++++|+..+++++...+        +...           ..+.++.|...+...... +.
T Consensus       189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            999998 99999999999999999999999998521        1110           245667777777765443 34


Q ss_pred             CCchhhhcccchh--HHHHHHHHHH
Q 024858          212 PPDLSDLLGLNLE--DEFVNGLEEM  234 (261)
Q Consensus       212 ~~~~~~~~~~~~~--d~~~~~~~~~  234 (261)
                      .+.+...+|..+.  +++.++....
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHH
Confidence            5666677777662  4444444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=1.7e-19  Score=156.16  Aligned_cols=176  Identities=15%  Similarity=0.044  Sum_probs=143.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858            3 QLVQKDPEAAIVLFWKAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~--~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      ....++.++|+..+++.+..  +|+++.++..+|.++.+.|++++|++.+++     |++  ......++.+|.++|+++
T Consensus        75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~~~g~~~  147 (291)
T 3mkr_A           75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--LECMAMTVQILLKLDRLD  147 (291)
T ss_dssp             HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHHHTTCHH
T ss_pred             HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHH
Confidence            34567899999999999875  699999999999999999999999999987     663  345667899999999999


Q ss_pred             HHHHHHHHHHHhhcchhhhc-Cc-chHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           81 EQIEMLKRKLRLIYQGEAFN-GK-PTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~-~~-~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      +|+..|+++++..|...... .. ........+      ..+.  +...|+++.+++++|.++.++|++++|+..|++++
T Consensus       148 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999865421111 00 000000001      1122  46689999999999999999999999999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCHHH-HHHHHHHHHhC
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~~e-A~~~~~~~l~~  185 (261)
                      +++|+++. +.++|.++..+|++++ +..++++++..
T Consensus       228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999 9999999999999987 56888999998

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.84  E-value=1.2e-19  Score=149.84  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-hhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-~~~~~~~  104 (261)
                      .+.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|+..+++++++.|... .+.. ..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG-AG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH-HH
Confidence            456788899999999999999999999999999853  4566689999999999999999999999854221 1100 00


Q ss_pred             HHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHH
Q 024858          105 KTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus       105 ~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA  175 (261)
                      ......+      ..+.  +.+.|+++.++.++|.+|..+|++++|+..|++++..+|++.. +..+|.++...|++++|
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            0000000      0111  3445666666666666666666666666666666666666665 66666666666666666


Q ss_pred             HHHHHHHHhC
Q 024858          176 RSVLEDVLYG  185 (261)
Q Consensus       176 ~~~~~~~l~~  185 (261)
                      +.++++++..
T Consensus       179 ~~~~~~~~~~  188 (243)
T 2q7f_A          179 LSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666666664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.84  E-value=1.9e-19  Score=162.06  Aligned_cols=181  Identities=15%  Similarity=0.059  Sum_probs=111.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|++  ......+|.+|..+|++++|
T Consensus        36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A  113 (450)
T 2y4t_A           36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--TAARLQRGHLLLKQGKLDEA  113 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHH
Confidence            3567888888888888888888888888888888888888888888888888888874  33555688888888888888


Q ss_pred             HHHHHHHHHhhcchh---h-hcCc--c---------hHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCH
Q 024858           83 IEMLKRKLRLIYQGE---A-FNGK--P---------TKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNF  139 (261)
Q Consensus        83 ~~~~~~al~l~~~~~---~-~~~~--~---------~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~  139 (261)
                      +..|++++++.|...   . +...  .         .......+      ..+.  +.+.|+++.++.++|.+|...|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  193 (450)
T 2y4t_A          114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP  193 (450)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence            888888888755322   1 0000  0         00000000      0010  234455555555555555555555


Q ss_pred             HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          140 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       140 ~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|+..|++++..+|+++. +.++|.++...|++++|+..|++++..
T Consensus       194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5555555555555555554 455555555555555555555555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=4.6e-20  Score=140.21  Aligned_cols=121  Identities=12%  Similarity=0.059  Sum_probs=108.4

Q ss_pred             HHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh
Q 024858           18 KAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE   97 (261)
Q Consensus        18 ~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~   97 (261)
                      ++..++|+.++++.++|..+.++|++++|+..|+++++++|+++  .++..+|.+|.+.|++++|+..|+++++++    
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----   77 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLD----   77 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhh----
Confidence            34568999999999999999999999999999999999999853  456669999999999999999999999874    


Q ss_pred             hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858           98 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  166 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l  166 (261)
                                            |+++.++.++|.+|..+|++++|+..|+++++++|++.. +.+|+.|+
T Consensus        78 ----------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           78 ----------------------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             ----------------------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                                  467789999999999999999999999999999999999 88888875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.83  E-value=5.4e-20  Score=158.72  Aligned_cols=160  Identities=14%  Similarity=0.030  Sum_probs=118.8

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      -|...+++..+|..+.+.|++++|+..|+++++.+|+++  .+...||.+|...|++++|+..|+++++..|........
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            377777788888888888888888888888888888743  345557788888888888888888877765522111000


Q ss_pred             ----chHHHhhc--hhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hh-hhhHHHHHHHcCC
Q 024858          103 ----PTKTARSH--GKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-ACNLGLCLIKRTR  171 (261)
Q Consensus       103 ----~~~~~~~~--~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~-~~~L~~~l~~~g~  171 (261)
                          ........  ...+.  +.+.|++++++.+||.+|..+|++++|+..|+++++.+|++  .. +.+||.++..+|+
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence                00000000  00111  56678999999999999999999999999999999999998  66 8899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 024858          172 YNEARSVLEDVLY  184 (261)
Q Consensus       172 ~~eA~~~~~~~l~  184 (261)
                      .++|...|++++.
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.83  E-value=1.2e-20  Score=147.49  Aligned_cols=132  Identities=11%  Similarity=0.063  Sum_probs=114.3

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858           32 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  111 (261)
Q Consensus        32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~  111 (261)
                      .||.++..+|++++|++.+++++...|+++  ..+..+|.+|.+.|++++|++.|+++++++                  
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------   61 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------   61 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence            478999999999999999999999988843  345569999999999999999999999974                  


Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHH-HHHHHhCCCCC
Q 024858          112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV-LEDVLYGRIPG  189 (261)
Q Consensus       112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~-~~~~l~~~~~~  189 (261)
                              |+++.+|.++|.+|..+|++++|+..|+++++++|+++. ++++|.+|.++|++++|+.. +++++..   +
T Consensus        62 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~  130 (150)
T 4ga2_A           62 --------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---F  130 (150)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---S
T ss_pred             --------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---C
Confidence                    567899999999999999999999999999999999999 99999999999999988876 5899998   5


Q ss_pred             Ccchh
Q 024858          190 CEDGR  194 (261)
Q Consensus       190 ~~~~~  194 (261)
                      |.++.
T Consensus       131 P~~~~  135 (150)
T 4ga2_A          131 PGSPA  135 (150)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            55544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=1e-18  Score=151.44  Aligned_cols=181  Identities=15%  Similarity=0.141  Sum_probs=149.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...|+++  .....+|.+|...|++++|
T Consensus       130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT--EAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH--HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            35679999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhh-hc--Ccc---------hHHHhhchh------hhh--hhcCCCcHH----HHHHHHHHHHHcCC
Q 024858           83 IEMLKRKLRLIYQGEA-FN--GKP---------TKTARSHGK------KFQ--VSVRQETSR----LLGNLAWAYMQKTN  138 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~-~~--~~~---------~~~~~~~~~------~~~--~~l~p~~~~----~~~~Lg~~~~~~g~  138 (261)
                      +..+++++++.|.... +.  ...         .......+.      .+.  +.+.|+++.    ++.++|.+|..+|+
T Consensus       208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  287 (359)
T 3ieg_A          208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK  287 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence            9999999998664321 10  000         000000110      111  466788764    46679999999999


Q ss_pred             HHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          139 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       139 ~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++|+..|+++++.+|+++. +.++|.++...|++++|+..|++++..
T Consensus       288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999999998 999999999999999999999999998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=3.4e-20  Score=178.23  Aligned_cols=153  Identities=12%  Similarity=-0.074  Sum_probs=133.8

Q ss_pred             hhcCCHHHHHHHHHHHH--------HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAI--------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK   75 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al--------~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~   75 (261)
                      +..|++++|+..|++++        ..+|++..++..+|.++.++|++++|+..|+++++.+|+++  .+++.+|.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW--RLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--HHHHHHHHHHHH
Confidence            46799999999999999        89999999999999999999999999999999999999953  456679999999


Q ss_pred             cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           76 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        76 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      .|++++|+..|+++++++|                          +++.++.++|.+|.++|++++ +..|++|++++|+
T Consensus       480 ~g~~~~A~~~~~~al~l~P--------------------------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFP--------------------------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHST--------------------------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            9999999999999999854                          556778888888888888888 8888888888888


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.. ++++|.++..+|++++|+..|++++..
T Consensus       533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          533 VISAAFGLARARSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence            887 888888888888888888888888776

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.83  E-value=1.5e-18  Score=156.21  Aligned_cols=181  Identities=14%  Similarity=0.118  Sum_probs=151.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45679999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcc------------hHHHhhchh------hhh--hhcCCCcHH----HHHHHHHHHHHcCC
Q 024858           83 IEMLKRKLRLIYQGEAFNGKP------------TKTARSHGK------KFQ--VSVRQETSR----LLGNLAWAYMQKTN  138 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~------------~~~~~~~~~------~~~--~~l~p~~~~----~~~~Lg~~~~~~g~  138 (261)
                      +..|++++++.|.........            .......+.      .+.  +.+.|+++.    ++.++|.++...|+
T Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~  310 (450)
T 2y4t_A          231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK  310 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence            999999999866432111000            000001111      111  467788754    78899999999999


Q ss_pred             HHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          139 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       139 ~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++|+..|++++.++|+++. +.++|.++..+|++++|+..|++++..
T Consensus       311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999999999999999999 999999999999999999999999997

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=8.7e-19  Score=153.52  Aligned_cols=181  Identities=19%  Similarity=0.153  Sum_probs=148.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHH--------------H
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN--------------V   68 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~--------------~   68 (261)
                      ....|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++.......              .
T Consensus       108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 1fch_A          108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI  187 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred             HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999743221111              3


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcc--hh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcC
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKT  137 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~--~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g  137 (261)
                      ++.++ ..|++++|+..|++++++.|.  .. .+.. ........+      ..+.  +.+.|+++.++.++|.+|..+|
T Consensus       188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          188 LGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             THHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence            56666 899999999999999998765  11 1110 001111111      1111  5678999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          138 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       138 ~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++|+..|+++++++|++.. +.++|.++..+|++++|+.+|++++..
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999998 999999999999999999999999996

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=2.3e-19  Score=150.79  Aligned_cols=154  Identities=14%  Similarity=0.018  Sum_probs=135.8

Q ss_pred             hhcCCHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858            4 LVQKDPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~----~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~   79 (261)
                      ...|++++|+..|.++++.    +|..+.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCH
Confidence            4568899999999999987    456789999999999999999999999999999999853  4566799999999999


Q ss_pred             HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-
Q 024858           80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-  158 (261)
                      ++|+..|++++++.                          |+++.++.++|.+|..+|++++|+..|+++++++|++.. 
T Consensus        94 ~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (275)
T 1xnf_A           94 DAAYEAFDSVLELD--------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR  147 (275)
T ss_dssp             HHHHHHHHHHHHHC--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhcC--------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH
Confidence            99999999999974                          345679999999999999999999999999999999987 


Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          159 ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       159 ~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      ...++ .+...|++++|+..+++++...
T Consensus       148 ~~~~~-~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A          148 SLWLY-LAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence            44444 4467799999999999988863

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=1e-18  Score=139.34  Aligned_cols=133  Identities=18%  Similarity=0.065  Sum_probs=122.9

Q ss_pred             ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      +.+.++.+||.++.++|++++|++.|+++++++|+++  .....+|.+|.+.|++++|+..+++++...           
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-----------   69 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV--ETLLKLGKTYMDIGLPNDAIESLKKFVVLD-----------   69 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence            4567899999999999999999999999999999953  456669999999999999999999998864           


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                                     |+++.++.++|.++...+++++|+..+.+++.++|++.. +..+|.++..+|++++|+..|++++
T Consensus        70 ---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l  134 (184)
T 3vtx_A           70 ---------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI  134 (184)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence                           456789999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hC
Q 024858          184 YG  185 (261)
Q Consensus       184 ~~  185 (261)
                      ..
T Consensus       135 ~~  136 (184)
T 3vtx_A          135 SI  136 (184)
T ss_dssp             HH
T ss_pred             Hh
Confidence            98

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.82  E-value=3.6e-20  Score=147.89  Aligned_cols=153  Identities=14%  Similarity=0.045  Sum_probs=129.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HHcCCHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY-KKCGKVEE   81 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly-~~~g~~~e   81 (261)
                      .+..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++...| ++.  +...++.+. ...++..+
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~--~~~~~~~~~~~~~~~~~~   92 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS--YKSLIAKLELHQQAAESP   92 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH--HHHHHHHHHHHHHHTSCH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH--HHHHHHHHHHHhhcccch
Confidence            46689999999999999999999999999999999999999999999999999888 432  233334332 23344456


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hh-
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-  158 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~-  158 (261)
                      |+..|++++++.                          |+++.++.++|.+|..+|++++|+..|+++++.+|+.  .. 
T Consensus        93 a~~~~~~al~~~--------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a  146 (176)
T 2r5s_A           93 ELKRLEQELAAN--------------------------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV  146 (176)
T ss_dssp             HHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH
T ss_pred             HHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH
Confidence            788888888864                          5678899999999999999999999999999999986  45 


Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          159 ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       159 ~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +.+||.++..+|+.++|+..|++++.
T Consensus       147 ~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          147 KKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            88999999999999999999999886

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=2.5e-18  Score=143.14  Aligned_cols=155  Identities=14%  Similarity=0.044  Sum_probs=143.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHcCCHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~--~~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      ....|++++|+.+|++++..+|....++..+|.++...|++++|+..+++++.  ..|.+  ......+|.+|...|+++
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~  158 (252)
T 2ho1_A           81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSLQMKKPA  158 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHHHcCCHH
Confidence            45689999999999999999999999999999999999999999999999999  77763  345667999999999999


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-h
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A  159 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~  159 (261)
                      +|+..|+++++..                          |+++.++..+|.+|..+|++++|+..|+++++.+|++.. +
T Consensus       159 ~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  212 (252)
T 2ho1_A          159 QAKEYFEKSLRLN--------------------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL  212 (252)
T ss_dssp             HHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHhcC--------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            9999999999874                          346678999999999999999999999999999999998 8


Q ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          160 CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       160 ~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..++.++...|++++|..++++++..
T Consensus       213 ~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          213 LLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            89999999999999999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.82  E-value=3.7e-19  Score=166.85  Aligned_cols=153  Identities=12%  Similarity=0.006  Sum_probs=125.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .|++++|+.+|+++++.+|+++.++..+|.++..+|++++|++.++++++++|+++  .....+|.+|..+|++++|++.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999853  4566799999999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  164 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~  164 (261)
                      |++++++.                          |+++.++.++|.+|..+|++++|+..|+++++++|++.. +.++|.
T Consensus        80 ~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           80 LQQASDAA--------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             HHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999974                          456789999999999999999999999999999999998 999999


Q ss_pred             HHHHc---CCHHHHHHHHHHHHhCC
Q 024858          165 CLIKR---TRYNEARSVLEDVLYGR  186 (261)
Q Consensus       165 ~l~~~---g~~~eA~~~~~~~l~~~  186 (261)
                      ++..+   |++++|...|++++..+
T Consensus       134 ~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          134 WRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccccHHHHHHHHHHHHhcC
Confidence            99999   99999999999999974

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.82  E-value=8.6e-20  Score=143.48  Aligned_cols=127  Identities=15%  Similarity=0.140  Sum_probs=102.3

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858           48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  127 (261)
Q Consensus        48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~  127 (261)
                      ..+++++.++|+++  .....+|.+|.+.|++++|+..|+++++++                          |+++.+|.
T Consensus        23 ~~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------P~~~~~~~   74 (151)
T 3gyz_A           23 ATLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------FYNVDYIM   74 (151)
T ss_dssp             CCTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred             CCHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHH
Confidence            45667788888843  345568888899999999999999988874                          46778899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858          128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  206 (261)
Q Consensus       128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l  206 (261)
                      +||.+|..+|++++|+..|+++++++|+++. ++++|.+|..+|++++|+..|++++..   .++ ..-.++|..++..+
T Consensus        75 ~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l---~~~-~~~~~~A~~ll~~l  150 (151)
T 3gyz_A           75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH---SND-EKLKIKAQSYLDAI  150 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-HHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999999999999987   222 22445677766654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.81  E-value=1.3e-18  Score=159.92  Aligned_cols=154  Identities=14%  Similarity=0.101  Sum_probs=132.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|+ +.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHH
Confidence            45678999999999999999999 89999999999999999999999999999999853  3566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      +..|++++++.|                          +++.++.++|.+|..+|++++|+..|+++++.+|+++. +.+
T Consensus       330 ~~~~~~a~~~~~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  383 (537)
T 3fp2_A          330 KEDFQKAQSLNP--------------------------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF  383 (537)
T ss_dssp             HHHHHHHHHHCT--------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            999999998743                          34567778888888888888888888888888888877 777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|.++...|++++|+..|++++..
T Consensus       384 l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          384 FAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHc
Confidence            888888888888888888887775

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=1.5e-18  Score=145.91  Aligned_cols=156  Identities=17%  Similarity=0.096  Sum_probs=131.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHcCCHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--~~~~~~~L~~ly~~~g~~~   80 (261)
                      .+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.++  .......+|.+|...|+++
T Consensus        13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~   91 (272)
T 3u4t_A           13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS   91 (272)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH
Confidence            46789999999999999999999999999999999999999999999999999 44321  1223567999999999999


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-h
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A  159 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~  159 (261)
                      +|+..|++++++.|                          +++.++.++|.+|..+|++++|+..|+++++++|++.. +
T Consensus        92 ~A~~~~~~a~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  145 (272)
T 3u4t_A           92 LAIQQYQAAVDRDT--------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF  145 (272)
T ss_dssp             HHHHHHHHHHHHST--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH
T ss_pred             HHHHHHHHHHhcCc--------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH
Confidence            99999999999753                          45567888888888888888888888888888888887 8


Q ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          160 CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       160 ~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++|......+++++|+..|++++..
T Consensus       146 ~~l~~~~~~~~~~~~A~~~~~~a~~~  171 (272)
T 3u4t_A          146 YELGQAYYYNKEYVKADSSFVKVLEL  171 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88884444455888888888888886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.81  E-value=1.9e-19  Score=141.52  Aligned_cols=118  Identities=9%  Similarity=-0.030  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      +-..|++++..+|+++++++.+|.++.++|++++|+..|++++.++|+++  ..+..+|.+|...|++++|+..|+++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            33456677889999999999999999999999999999999999999954  3566699999999999999999999999


Q ss_pred             hhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           92 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        92 l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      +.                          |+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus        99 l~--------------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LG--------------------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HS--------------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            74                          56788999999999999999999999999999999886

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=5.1e-19  Score=163.09  Aligned_cols=189  Identities=14%  Similarity=0.053  Sum_probs=139.5

Q ss_pred             cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhcchh-hhcCcchHHHhhch------
Q 024858           40 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV-EEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------  111 (261)
Q Consensus        40 ~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~-~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------  111 (261)
                      .+++++++..++......|.++  .....+|.+|...|++ ++|+..|++++++.|... ++.. ........+      
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a--~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~-lg~~~~~~g~~~~A~  157 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEA--QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ-LGEVYWKKGDVTSAH  157 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHH
Confidence            4567899999999998888743  4566799999999999 999999999999976432 2221 001111111      


Q ss_pred             hhhh--hhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc--------CC
Q 024858          112 KKFQ--VSVRQETSRLLGNLAWAYMQK---------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR--------TR  171 (261)
Q Consensus       112 ~~~~--~~l~p~~~~~~~~Lg~~~~~~---------g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~--------g~  171 (261)
                      ..+.  +.+.|+ +.++.++|.+|..+         |++++|+..|+++++++|++.. +.+||.+|..+        |+
T Consensus       158 ~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          158 TCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence            1122  678899 69999999999999         9999999999999999999999 99999999999        99


Q ss_pred             HHHHHHHHHHHHhCCC---CCCc----------chhhHHHHHHHHHHHHhcCC-CCchhhhcccch--hHHHHHHHH
Q 024858          172 YNEARSVLEDVLYGRI---PGCE----------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL--EDEFVNGLE  232 (261)
Q Consensus       172 ~~eA~~~~~~~l~~~~---~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~--~d~~~~~~~  232 (261)
                      +++|+..|++++...+   ..+.          ..+.++.|...+.......| .+.+...++..+  .+++.+++.
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999733   1111          24666777777776544444 455555666554  244444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.80  E-value=2.1e-18  Score=160.82  Aligned_cols=214  Identities=15%  Similarity=0.085  Sum_probs=153.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ...|++++|...|.+++..+|+++.++..+|.++.+.|++++|++.+++++..+|++  ...++.++.+|.+.|++++|+
T Consensus       350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~  427 (597)
T 2xpi_A          350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF--GPAWIGFAHSFAIEGEHDQAI  427 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Confidence            456888889999988888888888888888888989999999999998888888874  335566888888889999999


Q ss_pred             HHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 024858           84 EMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--  152 (261)
Q Consensus        84 ~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~--  152 (261)
                      +.|+++++..|... .+.. ........+      ..+.  +.+.|+++.++.++|.+|.+.|++++|+..|+++++.  
T Consensus       428 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  506 (597)
T 2xpi_A          428 SAYTTAARLFQGTHLPYLF-LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK  506 (597)
T ss_dssp             HHHHHHHHTTTTCSHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            99988888765332 2211 000000111      1121  4667888888888999999999999999999998888  


Q ss_pred             ----CCCc-hh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhcCC-CCch
Q 024858          153 ----DPDA-NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQP-PPDL  215 (261)
Q Consensus       153 ----~P~~-~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~~~-~~~~  215 (261)
                          +|++ .. +.++|.+|...|++++|+.+|++++...+.++.          ..+.++.|.+.+..+....| ++.+
T Consensus       507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence                6665 45 788888999999999999999888886322211          24556667777766544343 3344


Q ss_pred             hhhcc
Q 024858          216 SDLLG  220 (261)
Q Consensus       216 ~~~~~  220 (261)
                      ...++
T Consensus       587 ~~~l~  591 (597)
T 2xpi_A          587 SDLLK  591 (597)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=7.1e-18  Score=145.92  Aligned_cols=173  Identities=10%  Similarity=0.058  Sum_probs=129.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCCHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      .+..|+++.|+..++.   .+|....++..++..+...|+.++|++.+++++..  +|+++  .+...+|.+|...|+++
T Consensus        44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~~~g~~~  118 (291)
T 3mkr_A           44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT--TFLLMAASIYFYDQNPD  118 (291)
T ss_dssp             HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHCCCHH
Confidence            5678999999987765   36667888999999999999999999999998875  58853  45677999999999999


Q ss_pred             HHHHHHHHHHHhhcch-hhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 024858           81 EQIEMLKRKLRLIYQG-EAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLA--WAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        81 eA~~~~~~al~l~~~~-~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg--~~~~~~g~~~eA~~~~~~a  149 (261)
                      +|++.|++     |.. .++.. ........+      ..+.  +.+.|++.......|  .++...|++++|+..|+++
T Consensus       119 ~Al~~l~~-----~~~~~~~~~-l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          119 AALRTLHQ-----GDSLECMAM-TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHTT-----CCSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhC-----CCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            99999998     211 11110 000000111      1111  455677654433333  3334558999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      ++.+|+++. ++++|.++..+|++++|+..|++++..+
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999998 8899999999999999999999999973

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=1e-17  Score=136.11  Aligned_cols=155  Identities=12%  Similarity=-0.060  Sum_probs=140.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHcCCH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-g~~~eAi~~~~~~~~--~~P~~~~~~~~~~L~~ly~~~g~~   79 (261)
                      ....|++++|+.+|++++..+|.++.++..+|.++... |++++|+..+++++.  ..|.  .......+|.+|...|++
T Consensus        52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~  129 (225)
T 2vq2_A           52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQF  129 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCH
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCH
Confidence            45689999999999999999999999999999999999 999999999999999  5555  234566799999999999


Q ss_pred             HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-Cchh
Q 024858           80 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK  158 (261)
Q Consensus        80 ~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~  158 (261)
                      ++|+..++++++..                          |+++.++.++|.++..+|++++|+..|++++..+| ++..
T Consensus       130 ~~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  183 (225)
T 2vq2_A          130 GLAEAYLKRSLAAQ--------------------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD  183 (225)
T ss_dssp             HHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHHHHHHHHhC--------------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999874                          34677899999999999999999999999999999 8888


Q ss_pred             -hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          159 -ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       159 -~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                       +..++.++...|++++|..+++.++..
T Consensus       184 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          184 DLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence             778899999999999999999999876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.80  E-value=3.4e-18  Score=141.75  Aligned_cols=175  Identities=11%  Similarity=-0.035  Sum_probs=139.5

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHH--
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKK--   75 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~-~~~~~L~~ly~~--   75 (261)
                      ..+..|++++|+..|++++...|..   +.++..+|.++..+|++++|+..|+++++.+|++... .....+|.+|..  
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~   92 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD   92 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence            3567899999999999999987765   5789999999999999999999999999999985321 234557777765  


Q ss_pred             ----------------cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q 024858           76 ----------------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF  139 (261)
Q Consensus        76 ----------------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~  139 (261)
                                      .|++++|+..|+++++..|............         ..+..........+|.+|..+|++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l---------~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL---------VFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHcCcH
Confidence                            6899999999999999876332100000000         001112234557899999999999


Q ss_pred             HHHHHHHHHHHhhCCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          140 MAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       140 ~eA~~~~~~al~~~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|+..|+++++..|+++   . +..+|.++.++|++++|+..++++...
T Consensus       164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            999999999999999986   4 789999999999999999999998887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.80  E-value=8.7e-18  Score=138.62  Aligned_cols=135  Identities=10%  Similarity=-0.038  Sum_probs=122.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P-~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      .+.+++++..+|.++...|++++|+..|++++.++| .+.  .....+|.+|...|++++|+..|++++++.        
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------   72 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKKN--------   72 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------
Confidence            355678999999999999999999999999999998 543  344459999999999999999999999874        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-------h-hhhHHHHHHHcCCHH
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-------K-ACNLGLCLIKRTRYN  173 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-------~-~~~L~~~l~~~g~~~  173 (261)
                                        |+++.++.++|.+|..+|++++|+..|+++++++|+++       . +.++|.++..+|+++
T Consensus        73 ------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  134 (228)
T 4i17_A           73 ------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE  134 (228)
T ss_dssp             ------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence                              45678999999999999999999999999999999998       6 789999999999999


Q ss_pred             HHHHHHHHHHhC
Q 024858          174 EARSVLEDVLYG  185 (261)
Q Consensus       174 eA~~~~~~~l~~  185 (261)
                      +|+..|++++..
T Consensus       135 ~A~~~~~~al~~  146 (228)
T 4i17_A          135 KAEENYKHATDV  146 (228)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhc
Confidence            999999999997

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.80  E-value=6.4e-18  Score=157.61  Aligned_cols=232  Identities=11%  Similarity=0.012  Sum_probs=182.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|++..++..++.++.+.|++++|+..+++++...|++  ....+.++.+|.+.|++++|
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK--AVTWLAVGIYYLCVNKISEA  392 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHhccHHHH
Confidence            4568999999999999999999999999999999999999999999999999999984  34566799999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ++.|++++++.|... .++. ........+      ..+.  +.+.|++..++.++|.+|...|++++|+..|+++++.+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  471 (597)
T 2xpi_A          393 RRYFSKSSTMDPQFGPAWIG-FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF  471 (597)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999865432 2221 001111111      1122  46788899999999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCc--------------chhhHHHHHHHHHHHHhcCC-CCc
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR---IPGCE--------------DGRTRKRAEELLLELESKQP-PPD  214 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~---~~~~~--------------~~~~~~~a~~~l~~l~~~~~-~~~  214 (261)
                      |+++. +..+|.+|...|++++|+.+|++++...   ..++.              ..+.++.|.+.+..+....| ++.
T Consensus       472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            99998 9999999999999999999999998852   11121              24666778888877554444 455


Q ss_pred             hhhhcccch-----hHHHHHHHHHHHHh
Q 024858          215 LSDLLGLNL-----EDEFVNGLEEMVRV  237 (261)
Q Consensus       215 ~~~~~~~~~-----~d~~~~~~~~~l~~  237 (261)
                      +...+|..+     +++..+.|+..+..
T Consensus       552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          552 VHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            555566555     47777777776643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=1.6e-18  Score=148.80  Aligned_cols=155  Identities=12%  Similarity=0.086  Sum_probs=142.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA--QLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHH
Confidence            55678899999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-------  155 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~-------  155 (261)
                      +..|++++++.                          |+++.++.++|.+|..+|++++|+..|++++.++|+       
T Consensus       226 ~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  279 (327)
T 3cv0_A          226 LDAYNRALDIN--------------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE  279 (327)
T ss_dssp             HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence            99999999874                          356778999999999999999999999999999999       


Q ss_pred             -----chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 -----ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 -----~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                           +.. +.++|.++..+|++++|..++++++..
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence                 677 889999999999999999999877664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=4.6e-18  Score=146.66  Aligned_cols=163  Identities=13%  Similarity=0.072  Sum_probs=135.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--h--HHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGD------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p------~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~--~~~~~~~L~~l   72 (261)
                      ....|++++|+..|.+++.+.+      ..+.++.++|.++..+|++++|+..|++++.+.|..  .  .....+.+|.+
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3457999999999999998632      236789999999999999999999999999988742  1  12345669999


Q ss_pred             HHHc-CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           73 YKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        73 y~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      |... |++++|+..|++++++.|...              ...      ....++.++|.+|..+|++++|+.+|++++.
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~--------------~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQ--------------SVA------LSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTT--------------CHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCC--------------ChH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9996 999999999999999864110              000      0135789999999999999999999999999


Q ss_pred             hCCCchh--------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          152 IDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 ~~P~~~~--------~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.|++..        +.++|.++..+|++++|+..|++++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9998753        368999999999999999999999997

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.78  E-value=4.4e-17  Score=136.75  Aligned_cols=180  Identities=9%  Similarity=-0.056  Sum_probs=142.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus        53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A  130 (275)
T 1xnf_A           53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLA  130 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhc---CcchHHHhhc--hhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           83 IEMLKRKLRLIYQGEAFN---GKPTKTARSH--GKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~---~~~~~~~~~~--~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                      +..|++++++.|......   +.........  ...+.  +...|++...+ +++.++...++.++|+..+++++...|+
T Consensus       131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~  209 (275)
T 1xnf_A          131 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS  209 (275)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence            999999999866432111   0000000000  00111  33445554443 5788888889999999999999988875


Q ss_pred             c----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 A----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .    .. +.++|.++..+|++++|+..|++++..
T Consensus       210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            4    45 789999999999999999999999997

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.78  E-value=1.4e-18  Score=135.57  Aligned_cols=118  Identities=14%  Similarity=-0.045  Sum_probs=72.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           13 IVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        13 ~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      ...|++++..+|++..++..+|.++...|++++|+..|++++..+|+++  ..+..+|.+|...|++++|+..|++++.+
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3456666666666666666666666666666666666666666666532  23344666666666666666666666655


Q ss_pred             hcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           93 IYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      .                          |+++.+++++|.+|..+|++++|+..|+++++++|+++.
T Consensus        85 ~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           85 D--------------------------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             S--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             C--------------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            3                          344556666666666666666666666666666666554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=2.2e-17  Score=139.29  Aligned_cols=144  Identities=13%  Similarity=0.043  Sum_probs=126.3

Q ss_pred             HHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhh
Q 024858           20 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA   98 (261)
Q Consensus        20 l~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~   98 (261)
                      ...+|..+++++.+|..+...|++++|+..|++++..+|++. .......+|.+|.+.|++++|+..|++++++.|..  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--   85 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--   85 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--
Confidence            356789999999999999999999999999999999999842 13456679999999999999999999999986511  


Q ss_pred             hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCchh-h----------
Q 024858           99 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ--------KTNFMAAEVVYQKAQMIDPDANK-A----------  159 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~--------~g~~~eA~~~~~~al~~~P~~~~-~----------  159 (261)
                                           |..+.+++++|.+|..        +|++++|+..|++++..+|++.. .          
T Consensus        86 ---------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           86 ---------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             ---------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             ---------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence                                 2346789999999999        99999999999999999999875 5          


Q ss_pred             -------hhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          160 -------CNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       160 -------~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                             +++|.+|..+|++++|+..|++++...
T Consensus       145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A          145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence                   788999999999999999999999973

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.9e-18  Score=154.24  Aligned_cols=179  Identities=17%  Similarity=0.072  Sum_probs=133.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|. +.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|
T Consensus       247 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A  323 (514)
T 2gw1_A          247 KFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQA  323 (514)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHH
Confidence            45679999999999999999999 99999999999999999999999999999999853  3566799999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      +..|++++++.|... .+.. ........+      ..+.  +.+.|+++.++.++|.+|..+|++++|+..|++++..+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          324 GKDFDKAKELDPENIFPYIQ-LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHHHHHTCSSCSHHHHH-HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            999999999865321 1100 000000000      0111  35566677777777777777777777777777777777


Q ss_pred             CCch------h-hhhHHHHHHH---cCCHHHHHHHHHHHHhC
Q 024858          154 PDAN------K-ACNLGLCLIK---RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~------~-~~~L~~~l~~---~g~~~eA~~~~~~~l~~  185 (261)
                      |++.      . +.++|.++..   .|++++|+..|++++..
T Consensus       403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            7663      2 5667777777   77777777777777765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.77  E-value=3.7e-19  Score=157.02  Aligned_cols=154  Identities=16%  Similarity=0.105  Sum_probs=137.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-------------HHHHHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDL   72 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-------------~~~~~~~L~~l   72 (261)
                      .+++++|+..|++++..+|+.+.++.++|.++..+|++++|+..|++++.+.|++.             ...+++.+|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            35566788888889999999999999999999999999999999999999999852             02456679999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |.+.|++++|+..|++++++.                          |+++.+++++|.+|..+|++++|+..|++++++
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELD--------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999974                          457789999999999999999999999999999


Q ss_pred             CCCchh-hhhHHHHHHHcCCHHHH-HHHHHHHHhC
Q 024858          153 DPDANK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~~-~~~L~~~l~~~g~~~eA-~~~~~~~l~~  185 (261)
                      +|++.. +.+++.++..+|++++| ...|++++..
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 99999999999999999 5677777763

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.77  E-value=3.1e-18  Score=133.55  Aligned_cols=134  Identities=16%  Similarity=0.050  Sum_probs=111.2

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHH
Q 024858           47 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  126 (261)
Q Consensus        47 i~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~  126 (261)
                      ...+++++.++|++  ......+|.++...|++++|+..|++++.+.                          |+++.+|
T Consensus         7 ~~~~~~al~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~   58 (148)
T 2vgx_A            7 GGTIAMLNEISSDT--LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------HYDSRFF   58 (148)
T ss_dssp             CCSHHHHTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHH
T ss_pred             hhhHHHHHcCCHhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------cccHHHH
Confidence            34678899999984  3455668999999999999999999999874                          4678899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  205 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~  205 (261)
                      .++|.+|..+|++++|+..|++++.++|+++. ++++|.+|..+|++++|+..|++++...+.++.......++..++..
T Consensus        59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999743333333334556666655


Q ss_pred             HHh
Q 024858          206 LES  208 (261)
Q Consensus       206 l~~  208 (261)
                      +..
T Consensus       139 l~~  141 (148)
T 2vgx_A          139 IKL  141 (148)
T ss_dssp             C--
T ss_pred             HHh
Confidence            543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.77  E-value=1.2e-17  Score=126.67  Aligned_cols=112  Identities=15%  Similarity=0.119  Sum_probs=98.0

Q ss_pred             HHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHH
Q 024858           52 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW  131 (261)
Q Consensus        52 ~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~  131 (261)
                      ++..++|+.+  .....+|..|.+.|++++|++.|++++++.                          |+++.++.++|.
T Consensus         4 r~a~inP~~a--~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~~~   55 (126)
T 4gco_A            4 RLAYINPELA--QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------PENAILYSNRAA   55 (126)
T ss_dssp             ---CCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHH
T ss_pred             HHHHHCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHhh
Confidence            3455889843  345669999999999999999999999974                          467889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchh
Q 024858          132 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGR  194 (261)
Q Consensus       132 ~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~  194 (261)
                      +|..+|++++|+..|+++++++|++.. ++++|.++..+|++++|+..|++++..   +|.+..
T Consensus        56 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~~~  116 (126)
T 4gco_A           56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV---DPSNEE  116 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CcCCHH
Confidence            999999999999999999999999999 999999999999999999999999998   554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.77  E-value=1e-17  Score=137.40  Aligned_cols=131  Identities=12%  Similarity=0.053  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV----------------LIDLYKKCGKVEEQIEMLKRK   89 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~----------------L~~ly~~~g~~~eA~~~~~~a   89 (261)
                      .++.+...|..+...|++++|+..|++++..+|+++  .....                +|.+|.+.|++++|+..|+++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            356788899999999999999999999999999853  34555                899999999999999999999


Q ss_pred             HHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858           90 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  168 (261)
Q Consensus        90 l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~  168 (261)
                      +++.                          |+++.++.++|.+|..+|++++|+..|+++++++|+++. ++++|.+|..
T Consensus        81 l~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           81 LQKA--------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9974                          467889999999999999999999999999999999999 9999999987


Q ss_pred             cCC--HHHHHHHHHHHHh
Q 024858          169 RTR--YNEARSVLEDVLY  184 (261)
Q Consensus       169 ~g~--~~eA~~~~~~~l~  184 (261)
                      +|+  .+++...|++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~  152 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSS  152 (208)
T ss_dssp             HHHHHHHHHHHHHC---C
T ss_pred             HhHHHHHHHHHHHHHHhC
Confidence            764  4556677777654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=9.3e-18  Score=141.05  Aligned_cols=182  Identities=8%  Similarity=-0.020  Sum_probs=132.4

Q ss_pred             chhhcCCHHHHHHHHHHHHHcC--CCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858            2 VQLVQKDPEAAIVLFWKAINAG--DRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~--p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~   78 (261)
                      +....|++++|+..|++++...  |.. ..++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|+
T Consensus        46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~  123 (272)
T 3u4t_A           46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL--DMYGQIGSYFYNKGN  123 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHccC
Confidence            3567899999999999999933  222 55689999999999999999999999999999853  356679999999999


Q ss_pred             HHHHHHHHHHHHHhhcchh-hhcCcchHHHh--hch---hhhh--hhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 024858           79 VEEQIEMLKRKLRLIYQGE-AFNGKPTKTAR--SHG---KKFQ--VSVRQETSRLLGNLAWAYMQKTN---FMAAEVVYQ  147 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~--~~~---~~~~--~~l~p~~~~~~~~Lg~~~~~~g~---~~eA~~~~~  147 (261)
                      +++|+..|++++++.|... .+.........  ...   ..+.  +.+.|+++.++.++|.++..+|+   +++|+..|+
T Consensus       124 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  203 (272)
T 3u4t_A          124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE  203 (272)
T ss_dssp             HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence            9999999999999854321 11100000000  000   0111  46677777777788888877777   777888888


Q ss_pred             HHHhhC---CCc-----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          148 KAQMID---PDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       148 ~al~~~---P~~-----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++++.   |+.     .. +..+|.+|...|++++|+.+|++++..
T Consensus       204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            887775   442     13 556788888888888888888888776

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=2.1e-17  Score=138.45  Aligned_cols=164  Identities=21%  Similarity=0.212  Sum_probs=135.6

Q ss_pred             chhhcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--------CCchhHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--------CSKQSQESL   65 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~--------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~--------~P~~~~~~~   65 (261)
                      +....|++++|+.+|.+++..        +|....++..+|.++..+|++++|+..+++++..        .|.  ....
T Consensus        52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~  129 (283)
T 3edt_B           52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD--VAKQ  129 (283)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--HHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH--HHHH
Confidence            345689999999999999976        4677889999999999999999999999999887        344  3445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ...+|.+|...|++++|+..|++++++....             .+.     -.|....++.++|.+|..+|++++|+.+
T Consensus       130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~  191 (283)
T 3edt_B          130 LNNLALLCQNQGKAEEVEYYYRRALEIYATR-------------LGP-----DDPNVAKTKNNLASCYLKQGKYQDAETL  191 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------SCT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6779999999999999999999999973100             000     0123456899999999999999999999


Q ss_pred             HHHHHhhC-------------------------------------------------CCchh-hhhHHHHHHHcCCHHHH
Q 024858          146 YQKAQMID-------------------------------------------------PDANK-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus       146 ~~~al~~~-------------------------------------------------P~~~~-~~~L~~~l~~~g~~~eA  175 (261)
                      |++++++.                                                 |+... +.+||.+|..+|++++|
T Consensus       192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  271 (283)
T 3edt_B          192 YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA  271 (283)
T ss_dssp             HHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999872                                                 33344 67899999999999999


Q ss_pred             HHHHHHHHhC
Q 024858          176 RSVLEDVLYG  185 (261)
Q Consensus       176 ~~~~~~~l~~  185 (261)
                      +.+|++++..
T Consensus       272 ~~~~~~al~~  281 (283)
T 3edt_B          272 HTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.76  E-value=5.7e-18  Score=162.79  Aligned_cols=144  Identities=10%  Similarity=-0.059  Sum_probs=127.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.|+++++++|+++  ...+.+|.+|.+.|++++ 
T Consensus       443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-  519 (681)
T 2pzi_A          443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-  519 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-
T ss_pred             HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-
Confidence            45679999999999999999999999999999999999999999999999999999854  355669999999999999 


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      ++.|+++++++                          |+++.+++++|.+|..+|++++|+..|+++++++|++.. +.+
T Consensus       520 ~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  573 (681)
T 2pzi_A          520 HKFYQTVWSTN--------------------------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLT  573 (681)
T ss_dssp             TCHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHhC--------------------------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHH
Confidence            99999999974                          467889999999999999999999999999999999999 999


Q ss_pred             HHHHHHHcCCHHHH
Q 024858          162 LGLCLIKRTRYNEA  175 (261)
Q Consensus       162 L~~~l~~~g~~~eA  175 (261)
                      +|.++...|+.+++
T Consensus       574 ~~~~~~~~~~~~~~  587 (681)
T 2pzi_A          574 SAVTLLSGRSTSEV  587 (681)
T ss_dssp             HHHHTC-------C
T ss_pred             HHHHHHccCCCCCC
Confidence            99999887774443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=1.6e-17  Score=144.09  Aligned_cols=175  Identities=6%  Similarity=-0.023  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           10 EAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR   88 (261)
Q Consensus        10 ~~A~~~~~~al~-~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~   88 (261)
                      ++|...|++|+. .+|++..+|..+|.++...|++++|++.|++++++.|.++.. ++..++.++.+.|++++|+..|++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH-HHHHHHHHHHHhcCHHHHHHHHHH
Confidence            899999999999 799999999999999999999999999999999999985422 556688999999999999999999


Q ss_pred             HHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-
Q 024858           89 KLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---DPD-  155 (261)
Q Consensus        89 al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~---~P~-  155 (261)
                      +++..|... .+.+.........+      ..+.  +.+.|+++.+|.++|.++..+|++++|...|++++..   +|+ 
T Consensus       160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~  239 (308)
T 2ond_A          160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  239 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence            999755321 11100000000001      1111  4556777777777777777777777777777777774   443 


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.. |..++.++...|++++|..++++++..
T Consensus       240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          240 SGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444 667777777777777777777777775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.75  E-value=1.3e-17  Score=139.74  Aligned_cols=164  Identities=24%  Similarity=0.330  Sum_probs=135.4

Q ss_pred             hhcCCHHHHHHHHHHHHH--------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cch-hHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAIN--------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-SQESLDNVL   69 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~--------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~~-~~~~~~~~L   69 (261)
                      ...|++++|+.+|++++.        .+|..+.++..+|.++..+|++++|+..+++++.+.     +++ ........+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            456888999999999997        336788899999999999999999999999998773     221 133456779


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |.+|...|++++|+..|++++++...          ..   +     .-.|....++.++|.+|..+|++++|+.+|+++
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~----------~~---~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREK----------VL---G-----KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHH----------HH---C-----TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHH----------Hc---C-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999997320          00   0     001234568999999999999999999999999


Q ss_pred             Hhh--------CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~--------~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+        +|.... +.++|.++..+|++++|+.++++++..
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999        666666 889999999999999999999999985

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=5.1e-17  Score=149.19  Aligned_cols=180  Identities=16%  Similarity=0.106  Sum_probs=142.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|
T Consensus       286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV--YPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45678999999999999999999999999999999999999999999999999999853  3455689999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHH------HHHHHHHHHHHc----------C
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSR------LLGNLAWAYMQK----------T  137 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~------~~~~Lg~~~~~~----------g  137 (261)
                      +..|++++++.|... .+.. ........+.      .+.  +.+.|+++.      .+.++|.+|..+          |
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  442 (537)
T 3fp2_A          364 EAFFNETKLKFPTLPEVPTF-FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE  442 (537)
T ss_dssp             HHHHHHHHHHCTTCTHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred             HHHHHHHHHhCCCChHHHHH-HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence            999999999865432 1110 0000001110      111  233333322      356778999999          9


Q ss_pred             CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          138 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       138 ~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++|+..|+++++.+|++.. +.++|.++..+|++++|+..|++++..
T Consensus       443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999999 999999999999999999999999997

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.3e-17  Score=150.28  Aligned_cols=180  Identities=15%  Similarity=0.107  Sum_probs=141.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|
T Consensus       280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A  357 (514)
T 2gw1_A          280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI--FPYIQLACLAYRENKFDDC  357 (514)
T ss_dssp             HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS--HHHHHHHHHTTTTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHHcCCHHHH
Confidence            45678888888899988888888888888889999999999999999988888888743  3455688888888999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHH------HHHHHHHHHHH---cCCHHHHHH
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSR------LLGNLAWAYMQ---KTNFMAAEV  144 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~------~~~~Lg~~~~~---~g~~~eA~~  144 (261)
                      +..|+++++..|... .+.. ........+      ..+.  +.+.|+++.      ++.++|.+|..   .|++++|+.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~  436 (514)
T 2gw1_A          358 ETLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN  436 (514)
T ss_dssp             HHHHHHHHHHSTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence            999998888755321 1110 000000001      0111  344555544      99999999999   999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++++..+|++.. +..+|.++..+|++++|+..|++++..
T Consensus       437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999999999998 999999999999999999999999998

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=7.1e-18  Score=129.90  Aligned_cols=117  Identities=11%  Similarity=-0.020  Sum_probs=63.7

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           14 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        14 ~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      ..|++++..+|++..++..+|.++...|++++|+..|++++..+|+++  ..+..+|.+|...|++++|+..|++++++.
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            345555555566555666666666666666666666666666555532  233345555555666666666665555542


Q ss_pred             cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           94 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                                |+++.++.++|.+|..+|++++|+..|+++++++|+++.
T Consensus        83 --------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           83 --------------------------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             --------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             --------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence                                      234455555565665566666666666665555555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.74  E-value=2.6e-17  Score=126.71  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=109.0

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHH
Q 024858           48 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  127 (261)
Q Consensus        48 ~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~  127 (261)
                      ..+++++.++|++  ......+|.++...|++++|+..|++++.+.                          |+++.+|.
T Consensus         5 ~~l~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~   56 (142)
T 2xcb_A            5 GTLAMLRGLSEDT--LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------HYDARYFL   56 (142)
T ss_dssp             ----CCTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred             hhHHHHHcCCHHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------CccHHHHH
Confidence            4677788889984  3345568999999999999999999999874                          46788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858          128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  206 (261)
Q Consensus       128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l  206 (261)
                      ++|.+|..+|++++|+..|++++.++|+++. ++++|.+|..+|++++|+..|++++...+.++.......++..++..+
T Consensus        57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 999999999999999999999999997433333344445566666665


Q ss_pred             Hh
Q 024858          207 ES  208 (261)
Q Consensus       207 ~~  208 (261)
                      ..
T Consensus       137 ~~  138 (142)
T 2xcb_A          137 TA  138 (142)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=2.2e-16  Score=136.80  Aligned_cols=173  Identities=14%  Similarity=0.034  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------cCCc-------HHHHHHHHHHHh-cCCchhHHHHHHHHHHHHH
Q 024858           10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQ-------LDRS-------EEAIEAIKSFRG-LCSKQSQESLDNVLIDLYK   74 (261)
Q Consensus        10 ~~A~~~~~~al~~~p~~~~al~~Lg~~~~~-------~g~~-------~eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~   74 (261)
                      ++|+..|++++..+|.++++|..+|.++.+       .|++       ++|+..|++++. +.|++  ..++..++.++.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~--~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence            789999999999999999999999999874       5887       999999999999 79984  345667899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhcchh--hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHH-HcCCHHHHH
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGE--AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYM-QKTNFMAAE  143 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~--~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~-~~g~~~eA~  143 (261)
                      ..|++++|+..|++++++.|...  ++... .......+      ..+.  +.+.|....++...+.+.. .+|++++|.
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQY-MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHH-HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999865332  22210 01111111      1122  4566777777766665543 379999999


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..|+++++.+|+++. |.++|.++..+|++++|+.+|++++..
T Consensus       190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999999999988 889999999999999999999999985

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=3.2e-16  Score=142.14  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=130.7

Q ss_pred             chhhcCCHHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-----h-hHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----Q-SQESLD   66 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~---------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-----~-~~~~~~   66 (261)
                      +....|++++|+..|++|+++         +|....++.++|.+|..+|++++|+..+++++.+.|.     . ......
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            345689999999999999874         6778889999999999999999999999999876442     0 012233


Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHHHhhcchh-hhcC--cchHHHhhch---h---hhh--hhcCCCcHHHHHHHHHHH
Q 024858           67 NVLIDLYKK--CGKVEEQIEMLKRKLRLIYQGE-AFNG--KPTKTARSHG---K---KFQ--VSVRQETSRLLGNLAWAY  133 (261)
Q Consensus        67 ~~L~~ly~~--~g~~~eA~~~~~~al~l~~~~~-~~~~--~~~~~~~~~~---~---~~~--~~l~p~~~~~~~~Lg~~~  133 (261)
                      ..+|..+..  .+++++|+++|++++++.|... +..+  .........+   .   .+.  +.++|+++.++.++|..+
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            445555544  4579999999999999976432 1111  0000000000   0   111  567788888888887666


Q ss_pred             HH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          134 MQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       134 ~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..    .|++++|+.+|++++.++|++.. +.++|.+|...|++++|+..|++++..
T Consensus       220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            44    46777888888888888888887 788888888888888888888888876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.74  E-value=6.5e-17  Score=143.75  Aligned_cols=163  Identities=12%  Similarity=0.070  Sum_probs=136.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----hHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQESLDNVLID   71 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----~~~~~~~~L~~   71 (261)
                      ....|++++|+.+|++++..      ++..+.++..+|.++..+|++++|+..+++++.+.+..     ......+.+|.
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  192 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT  192 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            45689999999999999986      23367889999999999999999999999999875531     12235677999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +|...|++++|+..|++++++.+..              +..      +....++.++|.+|..+|++++|+.+|++++.
T Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          193 NFLDLKQYEDAISHFQKAYSMAEAE--------------KQP------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHc--------------CCh------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999985311              000      01245899999999999999999999999999


Q ss_pred             -----hC-CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          152 -----ID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 -----~~-P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                           .+ |.... +.++|.++..+|++++|+.++++++..
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 46 66666 889999999999999999999999985

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.73  E-value=1.2e-16  Score=137.70  Aligned_cols=126  Identities=15%  Similarity=0.027  Sum_probs=93.9

Q ss_pred             CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchh-hhcCcchHHHhhchh------hhh--hhcCCCcHHHHH
Q 024858           57 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHGK------KFQ--VSVRQETSRLLG  127 (261)
Q Consensus        57 ~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~~~  127 (261)
                      .|++  ......+|..+...|++++|+..|++++++.|... +..+ ........++      .+.  +.+.|+....+.
T Consensus       113 lp~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          113 LPRE--EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLL-LAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             SCCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             cCCc--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHH-HHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence            4774  33455689999999999999999999999876432 2111 0011111111      111  356677777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       128 ~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+..+.++++.++|+..|++++..+|++.. +++||.+|..+|++++|+..|++++..
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            7788888888888889999999999999998 899999999999999999999999997

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=9.8e-17  Score=136.59  Aligned_cols=165  Identities=25%  Similarity=0.342  Sum_probs=137.8

Q ss_pred             hhhcCCHHHHHHHHHHHHH--------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cc-hhHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAIN--------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SK-QSQESLDNV   68 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~--------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~-~~~~~~~~~   68 (261)
                      ....|++++|+.+|++++.        .+|....++..+|.++...|++++|+..+++++...     ++ .........
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  116 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN  116 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            4678999999999999998        477888999999999999999999999999998873     21 113345677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      +|.+|...|++++|+..|++++++....             .+.     -.|....++.++|.+|..+|++++|+.+|++
T Consensus       117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A          117 LAVLYGKRGKYKEAEPLCKRALEIREKV-------------LGK-----DHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------HCT-----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------cCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999874100             000     0122456899999999999999999999999


Q ss_pred             HHhh--------CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~--------~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.+        +|.... +.++|.++..+|++++|+.++++++..
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9998        666666 889999999999999999999999974

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.73  E-value=8.4e-16  Score=130.04  Aligned_cols=175  Identities=17%  Similarity=0.111  Sum_probs=120.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK---   75 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~---   75 (261)
                      ....|++++|+.+|+++++  |+++.++..+|.++..    .|++++|+..|++++..+..    .....+|.+|..   
T Consensus        16 ~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~   89 (273)
T 1ouv_A           16 SYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NGCHLLGNLYYSGQG   89 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSS
T ss_pred             HHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhCCCC
Confidence            4567899999999999999  7788999999999999    99999999999999988622    345568999999   


Q ss_pred             -cCCHHHHHHHHHHHHHhhcchhhhc-CcchHH----Hhhch---hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHH
Q 024858           76 -CGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT----ARSHG---KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAA  142 (261)
Q Consensus        76 -~g~~~eA~~~~~~al~l~~~~~~~~-~~~~~~----~~~~~---~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA  142 (261)
                       .|++++|+..|+++++...+...++ +.....    .....   ..+...++.+++.++.++|.+|..    .+++++|
T Consensus        90 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A  169 (273)
T 1ouv_A           90 VSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA  169 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             cccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHH
Confidence             9999999999999998742111111 000000    00000   011122333456666677777766    6677777


Q ss_pred             HHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          143 EVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       143 ~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      +.+|+++++.+  ++. +.+||.+|..    .+++++|+.+|++++..
T Consensus       170 ~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  215 (273)
T 1ouv_A          170 LASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  215 (273)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence            77777766652  344 6666777776    67777777777766664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=9.9e-17  Score=145.50  Aligned_cols=228  Identities=13%  Similarity=0.085  Sum_probs=158.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      .++.++|+..|+++++.+|+++.++..+|..+..    .|++++|+..+++++..+|+.+  .....+|.+|...|++++
T Consensus       188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~  265 (472)
T 4g1t_A          188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT--DVLRSAAKFYRRKDEPDK  265 (472)
T ss_dssp             SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHcCchHH
Confidence            5778889999999999999999999999987755    4678899999999999999853  455669999999999999


Q ss_pred             HHHHHHHHHHhhcchh-hhc--CcchH-------------------HHhhch---hhhh--hhcCCCcHHHHHHHHHHHH
Q 024858           82 QIEMLKRKLRLIYQGE-AFN--GKPTK-------------------TARSHG---KKFQ--VSVRQETSRLLGNLAWAYM  134 (261)
Q Consensus        82 A~~~~~~al~l~~~~~-~~~--~~~~~-------------------~~~~~~---~~~~--~~l~p~~~~~~~~Lg~~~~  134 (261)
                      |+..|++++++.|... ++.  +....                   ......   ..+.  +.+.|++..++.++|.+|.
T Consensus       266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~  345 (472)
T 4g1t_A          266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA  345 (472)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence            9999999999876432 211  10000                   000000   0111  4778999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCchh----hhhHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHH-HHh
Q 024858          135 QKTNFMAAEVVYQKAQMIDPDANK----ACNLGLC-LIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE-LES  208 (261)
Q Consensus       135 ~~g~~~eA~~~~~~al~~~P~~~~----~~~L~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~-l~~  208 (261)
                      .+|++++|+.+|++++.++|++..    +.++|.+ +...|++++|+..|++++...+......+....+..++.. +..
T Consensus       346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~  425 (472)
T 4g1t_A          346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK  425 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998763    3566654 4578999999999999999843222223333334444433 344


Q ss_pred             cCCCCchhhhcccchh-----HHHHHHHHHHH
Q 024858          209 KQPPPDLSDLLGLNLE-----DEFVNGLEEMV  235 (261)
Q Consensus       209 ~~~~~~~~~~~~~~~~-----d~~~~~~~~~l  235 (261)
                      .+..+.+...+|..+.     +.+++.|+..+
T Consensus       426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          426 NGADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             CC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556788888888762     44555555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=8.3e-17  Score=137.02  Aligned_cols=165  Identities=21%  Similarity=0.225  Sum_probs=135.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----Cc-hhHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SK-QSQESLDNV   68 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~--------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----P~-~~~~~~~~~   68 (261)
                      ....|++++|+.+|++++..        +|....++..+|.++...|++++|+..+++++.+.     ++ .........
T Consensus        79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A           79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            45679999999999999976        46678889999999999999999999999998874     22 113345667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      +|.+|...|++++|+..|++++++.....             +.     -.|....++.++|.+|..+|++++|+..|++
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKL-------------GP-----DDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTS-------------CT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHh-------------CC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999732000             00     0123456899999999999999999999999


Q ss_pred             HHhh-------------------------------------------------CCCchh-hhhHHHHHHHcCCHHHHHHH
Q 024858          149 AQMI-------------------------------------------------DPDANK-ACNLGLCLIKRTRYNEARSV  178 (261)
Q Consensus       149 al~~-------------------------------------------------~P~~~~-~~~L~~~l~~~g~~~eA~~~  178 (261)
                      ++++                                                 +|+... +.++|.+|..+|++++|+.+
T Consensus       221 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  300 (311)
T 3nf1_A          221 ILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL  300 (311)
T ss_dssp             HHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9985                                                 355556 78999999999999999999


Q ss_pred             HHHHHhC
Q 024858          179 LEDVLYG  185 (261)
Q Consensus       179 ~~~~l~~  185 (261)
                      |++++..
T Consensus       301 ~~~al~l  307 (311)
T 3nf1_A          301 EEAAMRS  307 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999985

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.72  E-value=4.3e-16  Score=122.31  Aligned_cols=133  Identities=19%  Similarity=0.178  Sum_probs=121.6

Q ss_pred             ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      ....++..+|.++...|++++|+..+++++...|+++  .....+|.+|...|++++|+..++++++..           
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------   72 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV--DVALHLGIAYVKTGAVDRGTELLERSLADA-----------   72 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------
Confidence            3466788899999999999999999999999999853  456678999999999999999999999874           


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                                     |+++.++.++|.++...|++++|+..|++++..+|++.. +..+|.++...|++++|+.++++++
T Consensus        73 ---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A           73 ---------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence                           346678999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hC
Q 024858          184 YG  185 (261)
Q Consensus       184 ~~  185 (261)
                      ..
T Consensus       138 ~~  139 (186)
T 3as5_A          138 GL  139 (186)
T ss_dssp             HH
T ss_pred             hc
Confidence            97

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.72  E-value=6e-16  Score=114.87  Aligned_cols=130  Identities=26%  Similarity=0.271  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      .++..+|.++...|++++|+..+++++...|++.  .....++.++...|++++|+..+++++...              
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------------
Confidence            4678899999999999999999999999998743  345568999999999999999999998863              


Q ss_pred             hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                                  |+++.++.++|.++...|++++|+..+++++...|++.. +..+|.++...|++++|...+++++..
T Consensus        66 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 ------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             ------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence                        345678899999999999999999999999999999988 889999999999999999999999886

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.72  E-value=1.5e-16  Score=141.43  Aligned_cols=163  Identities=17%  Similarity=0.079  Sum_probs=137.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcC------CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----hHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAG------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQESLDNVLID   71 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~------p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----~~~~~~~~L~~   71 (261)
                      ....|++++|+..|++|+...      |..+.++.++|.++..+|++++|+..+++++.+.+..     ......+.+|.
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            457899999999999999752      3467789999999999999999999999998875531     12334567999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +|...|++++|++.|++++++.+.              .+..      +....++.+||.+|..+|++++|+.+|++++.
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~--------------~~~~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMD--------------IQND------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH--------------TTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHH--------------cCCH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999997421              0000      01245899999999999999999999999999


Q ss_pred             -----hCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          152 -----IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 -----~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                           .+|.... +.++|.++..+|++++|+.++++++..
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 7788866 889999999999999999999999996

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=6.3e-16  Score=130.83  Aligned_cols=172  Identities=14%  Similarity=0.083  Sum_probs=138.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cC
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CG   77 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g   77 (261)
                      .+++++|+.+|+++++.+  ++.++.++|.++..    .+++++|+..+++++..+..    .....+|.+|..    .|
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA----EGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc----cHHHHHHHHHHcCCCccc
Confidence            899999999999999985  78899999999999    99999999999999988522    345668999999    99


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhc-CcchHH----Hhhc---hhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFN-GKPTKT----ARSH---GKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVV  145 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~-~~~~~~----~~~~---~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~  145 (261)
                      ++++|+..|+++++..++...++ +.....    ....   ...+...++.+++.++.+||.+|..    .+++++|+..
T Consensus       129 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~  208 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR  208 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            99999999999999754322111 100000    0000   0112234455778999999999999    9999999999


Q ss_pred             HHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          146 YQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       146 ~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      |+++++.+|  +. +.+||.+|..    .+++++|+.+|++++..
T Consensus       209 ~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          209 YSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            999999976  56 8899999999    99999999999999997

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.71  E-value=2.2e-16  Score=137.00  Aligned_cols=161  Identities=14%  Similarity=0.184  Sum_probs=130.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hh--HHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~--~~~~~~~L~~l   72 (261)
                      ....|++++|+..|.+++.+.+.      ...++.++|.++..+|++++|+..|++++.+.+.  +.  .....+.+|.+
T Consensus        46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  125 (307)
T 2ifu_A           46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL  125 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34568999999999999976442      3567899999999999999999999999887542  11  12345668999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |.. |++++|+..|++++++.+..              +...      ....++.++|.+|..+|++++|+.+|++++.+
T Consensus       126 ~~~-g~~~~A~~~~~~Al~~~~~~--------------~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          126 MEP-LDLSKAVHLYQQAAAVFENE--------------ERLR------QAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HTT-TCHHHHHHHHHHHHHHHHHT--------------TCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHc-CCHHHHHHHHHHHHHHHHhC--------------CChh------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            988 99999999999999985411              0000      02468999999999999999999999999998


Q ss_pred             CCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 DPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++.      . +.++|.++..+|++++|+..|++++ .
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~  223 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S  223 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence            76543      3 5688999999999999999999999 6

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=4.3e-16  Score=116.81  Aligned_cols=117  Identities=10%  Similarity=-0.072  Sum_probs=94.8

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      |..+..+..+|..+...|++++|+..|++++.++|+++  .+...+|.+|.+.|++++|+..|++++++.          
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------   68 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKD----------   68 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------
Confidence            44567788888888899999999999999888888843  355668888888999999999998888864          


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCchh-hhhHHHHHHH
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PDANK-ACNLGLCLIK  168 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~-~~~L~~~l~~  168 (261)
                                      |+++.++.++|.+|..+|++++|+..|+++++++      |++.. +..++.+..+
T Consensus        69 ----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           69 ----------------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             ----------------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence                            4567788889999999999999999999999888      77777 6677766544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.70  E-value=7.2e-16  Score=119.72  Aligned_cols=132  Identities=15%  Similarity=0.007  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      .+..+..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|+..+++++++.            
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------   77 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELD------------   77 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence            456788999999999999999999999999999853  456668999999999999999999999874            


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh--HHHHHHHcCCHHHHHHHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN--LGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~--L~~~l~~~g~~~eA~~~~~~~  182 (261)
                                    |+++.++.++|.+|..+|++++|+..|++++.++|++.. +..  ++..+...|++++|+..++++
T Consensus        78 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           78 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence                          356789999999999999999999999999999999987 644  455588999999999999987


Q ss_pred             HhC
Q 024858          183 LYG  185 (261)
Q Consensus       183 l~~  185 (261)
                      ...
T Consensus       144 ~~~  146 (166)
T 1a17_A          144 RSV  146 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=9.6e-17  Score=138.33  Aligned_cols=164  Identities=11%  Similarity=0.021  Sum_probs=127.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCchh----HHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQL-DRSEEAIEAIKSFRGLCSKQS----QESLDNVLID   71 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~------~~al~~Lg~~~~~~-g~~~eAi~~~~~~~~~~P~~~----~~~~~~~L~~   71 (261)
                      ....|++++|+.+|++|+.+.|..      ..++.++|.++..+ |++++|+..|++++.+.|++.    .....+.+|.
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            456799999999999999876542      56899999999996 999999999999999988521    1234567899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +|.++|++++|+..|++++++.|......                   .....++.++|.+|..+|++++|+.+|++++.
T Consensus       167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          167 LKALDGQYIEASDIYSKLIKSSMGNRLSQ-------------------WSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTTG-------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhcCCccc-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999854211000                   01234789999999999999999999999999


Q ss_pred             hCCCchh------hhhHHHHHH--HcCCHHHHHHHHHHHHhC
Q 024858          152 IDPDANK------ACNLGLCLI--KRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 ~~P~~~~------~~~L~~~l~--~~g~~~eA~~~~~~~l~~  185 (261)
                      ++|++..      ...|+.++.  ..+++++|+..|++++..
T Consensus       228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence            9998764      234666665  467899999999888776

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.70  E-value=2e-15  Score=122.65  Aligned_cols=127  Identities=12%  Similarity=0.072  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      ..++++|.++...|++++|+..|++++  .|.   ......+|.+|...|++++|+..|++++++.              
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence            346789999999999999999999985  443   2356669999999999999999999999874              


Q ss_pred             hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----------------h-hhhHHHHHHHcC
Q 024858          108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------------K-ACNLGLCLIKRT  170 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~----------------~-~~~L~~~l~~~g  170 (261)
                                  |+++.++.++|.+|..+|++++|+..|++++++.|++.                . ++++|.++..+|
T Consensus        68 ------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  135 (213)
T 1hh8_A           68 ------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE  135 (213)
T ss_dssp             ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred             ------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence                        35678999999999999999999999999999988876                7 889999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 024858          171 RYNEARSVLEDVLYG  185 (261)
Q Consensus       171 ~~~eA~~~~~~~l~~  185 (261)
                      ++++|+..|++++..
T Consensus       136 ~~~~A~~~~~~al~~  150 (213)
T 1hh8_A          136 EWKKAEEQLALATSM  150 (213)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999999997

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.70  E-value=7e-16  Score=115.19  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=110.6

Q ss_pred             cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      ..|..+.++..+|.++...|++++|+..+++++..+|++.  .....+|.+|...|++++|+..+++++++.        
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------   80 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLE--------   80 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--------
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------
Confidence            4577899999999999999999999999999999999853  456669999999999999999999999874        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCC
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR  171 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~  171 (261)
                                        |+++.++.++|.+|..+|++++|+..|++++.++|++.. +..++.++..+|+
T Consensus        81 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 ------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             ------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                              356789999999999999999999999999999999998 8999999988775

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.69  E-value=1.9e-16  Score=125.54  Aligned_cols=120  Identities=17%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      ...|++++|+..+++++..+|+++  .....+|.+|...|++++|+..|++++++.                        
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------------   74 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------------   74 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------------
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------
Confidence            345666666666666666666632  234456666667777777777777766653                        


Q ss_pred             cCCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          118 VRQETSRLLGNLAWA-YMQKTNF--MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~-~~~~g~~--~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                        |+++.++.++|.+ +...|++  ++|+..|++++..+|++.. +.++|.++..+|++++|+..|++++..
T Consensus        75 --p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           75 --GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             --CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence              2345566667766 6666776  7777777777777776666 666777777777777777777777665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.69  E-value=4.5e-16  Score=125.02  Aligned_cols=164  Identities=13%  Similarity=0.015  Sum_probs=126.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHcCC
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~~~~~~~L~~ly~~~g~   78 (261)
                      .+..|++++|...++......+....++..+|.++..+|++++|+..+++++.+..    ..........+|.+|...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            46789999999966655554447889999999999999999999999999987422    11133456779999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--  156 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--  156 (261)
                      +++|+..+++++++..              ..+...     +....++.++|.++..+|++++|+..+++++.+.+..  
T Consensus        82 ~~~A~~~~~~al~~~~--------------~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  142 (203)
T 3gw4_A           82 WDAARRCFLEERELLA--------------SLPEDP-----LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HSCCCH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHH--------------HcCccH-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999732              001000     0124578999999999999999999999999864322  


Q ss_pred             h----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          157 N----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       157 ~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .    . +.++|.++..+|++++|+..+++++..
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            1    2 468999999999999999999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.69  E-value=1.5e-16  Score=136.66  Aligned_cols=179  Identities=13%  Similarity=0.069  Sum_probs=143.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++  ...+.+|.+|...|++++|
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A   91 (281)
T 2c2l_A           14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQCQLEMESYDEA   91 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45789999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhc----hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSH----GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~----~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      +..|++++++.|... .+........+..    .........|..+.+...++.++  .|++++|++.|+++++.+|++.
T Consensus        92 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~  169 (281)
T 2c2l_A           92 IANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG  169 (281)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred             HHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence            999999999976432 1111000000000    00111244566777888888766  7999999999999999999998


Q ss_pred             h-hhhHHHHHHHc-CCHHHHHHHHHHHHhC
Q 024858          158 K-ACNLGLCLIKR-TRYNEARSVLEDVLYG  185 (261)
Q Consensus       158 ~-~~~L~~~l~~~-g~~~eA~~~~~~~l~~  185 (261)
                      . ...++..+.+. +++++|..+|.++...
T Consensus       170 ~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          170 HIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            8 77777777776 7899999999998874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.69  E-value=1.5e-15  Score=130.63  Aligned_cols=164  Identities=13%  Similarity=0.094  Sum_probs=131.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~l   72 (261)
                      .+..|++++|+..|.++++..|...      ..+..+|.++...|++++|+..+++++...+..    ......+.+|.+
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            3568999999999999999877643      335678999999999999999999999866531    113356779999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |...|++++|+..|++++++....              +....     -...++.|+|.+|..+|++++|+.+|++++.+
T Consensus       165 y~~~~~~~~A~~~~~kal~~~~~~--------------~~~~~-----~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          165 YAENGYLKKGIDLFEQILKQLEAL--------------HDNEE-----FDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHS--------------CCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhc--------------Ccccc-----chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999763200              00000     01258999999999999999999999999998


Q ss_pred             CCCc------hh-hhhHHHHHHHcCCHHHH-HHHHHHHHhC
Q 024858          153 DPDA------NK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~------~~-~~~L~~~l~~~g~~~eA-~~~~~~~l~~  185 (261)
                      .++.      .. ++++|.+|..+|++++| ..+|++++..
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6531      34 78999999999999999 7889999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.69  E-value=6.5e-16  Score=121.37  Aligned_cols=115  Identities=15%  Similarity=0.119  Sum_probs=86.4

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      ++..+.++..+|.++...|++++|+..|++++.++|+++  .++..+|.+|...|++++|+..|++++++.         
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------   75 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVD---------   75 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------
Confidence            455667777888888888888888888888888888743  345557788888888888888888887763         


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  165 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~  165 (261)
                                       |+++.++.++|.+|..+|++++|+..|+++++++|++.. +++.+..
T Consensus        76 -----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           76 -----------------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             -----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence                             345677888888888888888888888888888888776 6655544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.69  E-value=3.8e-16  Score=124.35  Aligned_cols=134  Identities=16%  Similarity=0.098  Sum_probs=110.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      +|...+.+..+|.++.+.|++++|+..|+++++.+|+++  .....+|.+|...|++++|+..|+++++..|        
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------   71 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG--DVKLAKADCLLETKQFELAQELLATIPLEYQ--------   71 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--------
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--------
Confidence            344455678899999999999999999999999999953  4566799999999999999999999887642        


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHH
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE  180 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~  180 (261)
                                         ++..+..++.+. ...+...+|+..|+++++++|+++. ++++|.++..+|++++|+..|+
T Consensus        72 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  132 (176)
T 2r5s_A           72 -------------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW  132 (176)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                               233444445443 3334555689999999999999999 9999999999999999999999


Q ss_pred             HHHhC
Q 024858          181 DVLYG  185 (261)
Q Consensus       181 ~~l~~  185 (261)
                      +++..
T Consensus       133 ~~l~~  137 (176)
T 2r5s_A          133 NILKV  137 (176)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99997

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.69  E-value=7.6e-16  Score=122.09  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=112.6

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHcCCH--H
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGKV--E   80 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y~~~g~~--~   80 (261)
                      +..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++  .....+|.+ |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchH
Confidence            4578899999999999999999999999999999999999999999999999999853  355568888 8899999  9


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      +|+..|++++++.                          |+++.++.++|.+|..+|++++|+..|++++.++|++..
T Consensus        99 ~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A           99 QTRAMIDKALALD--------------------------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            9999999999874                          467899999999999999999999999999999999865

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.68  E-value=1.2e-15  Score=131.19  Aligned_cols=163  Identities=14%  Similarity=0.112  Sum_probs=132.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--hh--HHHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDLY   73 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~------al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~~--~~~~~~~L~~ly   73 (261)
                      +..|++++|...|++++...+..+.      .+..+|.++...|++++|+..+++++...+.  +.  .....+.+|.+|
T Consensus        86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            5679999999999999987776554      3345899999999999999999999986553  11  123467799999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ...|++++|+..|+++++......             .      ..+....++.|+|.+|..+|++++|+.++++++++.
T Consensus       166 ~~~g~~~~A~~~~~~al~~~~~~~-------------~------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          166 AENGYLKKGIDLFEQILKQLEALH-------------D------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSS-------------C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhcc-------------c------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999999998632100             0      001235689999999999999999999999999987


Q ss_pred             CCc------hh-hhhHHHHHHHcC-CHHHHHHHHHHHHhC
Q 024858          154 PDA------NK-ACNLGLCLIKRT-RYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~------~~-~~~L~~~l~~~g-~~~eA~~~~~~~l~~  185 (261)
                      ++.      .. ++++|.++..+| .+++|+..|++++..
T Consensus       227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            544      45 789999999999 579999999999985

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.68  E-value=6.9e-16  Score=114.39  Aligned_cols=124  Identities=18%  Similarity=0.175  Sum_probs=111.0

Q ss_pred             HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc
Q 024858           21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN  100 (261)
Q Consensus        21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~  100 (261)
                      ..+|..+.++..+|.++...|++++|+..+++++...|+++  .....+|.+|...|++++|+..+++++++.       
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   76 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICID-------   76 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-------
Confidence            34567788899999999999999999999999999999853  355668999999999999999999999874       


Q ss_pred             CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCH
Q 024858          101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  172 (261)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~  172 (261)
                                         |+++.++.++|.+|..+|++++|+..|++++.++|++.. +..+|.++..+|++
T Consensus        77 -------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           77 -------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             -------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence                               356779999999999999999999999999999999998 89999999998875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.68  E-value=6.5e-17  Score=131.03  Aligned_cols=153  Identities=15%  Similarity=0.081  Sum_probs=116.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH--------------HHHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--------------ESLDNVLID   71 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~--------------~~~~~~L~~   71 (261)
                      .|++++|...+.......+..+..+..+|.++...|++++|+..|++++.+.|.++.              ..+...+|.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            455666666666555555667788899999999999999999999999998887430              145566899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +|...|++++|+..+++++++.                          |+++.++.++|.+|..+|++++|+..|++++.
T Consensus        97 ~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           97 CYNKNKDYPKAIDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            9999999999999999998874                          35677899999999999999999999999999


Q ss_pred             hCCCchh-hhhHHHHHHHcCCHHHHH-HHHHHHHh
Q 024858          152 IDPDANK-ACNLGLCLIKRTRYNEAR-SVLEDVLY  184 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~g~~~eA~-~~~~~~l~  184 (261)
                      ++|++.. +..++.++..+|+.+++. ..|.+++.
T Consensus       151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998 889999999999888888 55666555

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.68  E-value=3.1e-15  Score=123.84  Aligned_cols=137  Identities=14%  Similarity=0.060  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      .+.++..+|..+...|++++|+..|++++...|++. .......+|.+|.+.|++++|+..|+++++..|...       
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-------   75 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-------   75 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-------
Confidence            456789999999999999999999999999999742 234566699999999999999999999999865211       


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCchh-h------
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQ------------------KTNFMAAEVVYQKAQMIDPDANK-A------  159 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~------------------~g~~~eA~~~~~~al~~~P~~~~-~------  159 (261)
                                      ..+.+++.+|.+|..                  +|++++|+..|+++++.+|++.. +      
T Consensus        76 ----------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l  139 (225)
T 2yhc_A           76 ----------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL  139 (225)
T ss_dssp             ----------------THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence                            123466777777665                  78999999999999999999875 3      


Q ss_pred             -----------hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          160 -----------CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       160 -----------~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                                 ..+|.+|.++|++++|+..|++++..
T Consensus       140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  176 (225)
T 2yhc_A          140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD  176 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                       57899999999999999999999997

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.68  E-value=2e-15  Score=112.03  Aligned_cols=126  Identities=26%  Similarity=0.272  Sum_probs=114.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|++++..+|....++..+|.++...|++++|+..+++++...|++.  .....++.+|...|++++|
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A   88 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEA   88 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHHhcCHHHH
Confidence            45679999999999999999999999999999999999999999999999999999843  3456689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      +..++++++..                          |+++.++.++|.++..+|++++|+..|++++..+|++
T Consensus        89 ~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           89 IEYYQKALELD--------------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999998864                          3456789999999999999999999999999999974

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.68  E-value=3.9e-17  Score=149.96  Aligned_cols=152  Identities=14%  Similarity=0.090  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-------------HHHHHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDLY   73 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-------------~~~~~~~L~~ly   73 (261)
                      +++++|+..|.+++...|+.+.++.++|.++..+|++++|+..|++++.++|.+.             ...+++.+|.+|
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888899999999999999999999999999999999999842             034566799999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      .++|++++|+..|++++++.                          |+++.+++++|.+|..+|++++|+..|+++++++
T Consensus       328 ~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLD--------------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHhcCHHHHHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999974                          4567899999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHH-HHHHHHh
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARS-VLEDVLY  184 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~-~~~~~l~  184 (261)
                      |++.. +.+++.++..+|++++|.. .|++++.
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998 9999999999999999874 4555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=3e-15  Score=128.61  Aligned_cols=181  Identities=12%  Similarity=0.001  Sum_probs=132.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHH-------HHHHHHcCCcHHHHHHHHHHHhcCCch--hH-------------
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDM-------AVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQ-------------   62 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~L-------g~~~~~~g~~~eAi~~~~~~~~~~P~~--~~-------------   62 (261)
                      ..+|+..|...|.+++..+|+..++|..+       +.++...+++.+++..+.+.+.+.|+.  +.             
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            57999999999999999999999999999       888888888888888888888877752  11             


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhh-hc-CcchHHHhhch---hhhhhhcC-CCc---HHHHHHH
Q 024858           63 ----ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FN-GKPTKTARSHG---KKFQVSVR-QET---SRLLGNL  129 (261)
Q Consensus        63 ----~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~-~~-~~~~~~~~~~~---~~~~~~l~-p~~---~~~~~~L  129 (261)
                          ..+...++.+|...|++++|.+.|+.++...|.... ++ +..........   ..+.-.+. |++   ..++++|
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence                223344677788888888888888887665432111 11 00000000000   00110111 111   4589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC--CC-chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          130 AWAYMQKTNFMAAEVVYQKAQMID--PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       130 g~~~~~~g~~~eA~~~~~~al~~~--P~-~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.++.++|++++|+..|++++.-.  |. ... ++++|.++.++|+.++|...|++++..
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999998655  66 556 889999999999999999999999997

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.66  E-value=1.3e-15  Score=135.59  Aligned_cols=182  Identities=22%  Similarity=0.199  Sum_probs=138.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCchhHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGL------CSKQSQESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~----~al~~Lg~~~~~~g~~~eAi~~~~~~~~~------~P~~~~~~~~~~L~~l   72 (261)
                      .+..|++++|+.+|++++..+|+++    .++..+|.++...|++++|+..+++++.+      .|.  .......+|.+
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~  135 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKSSGNLGNT  135 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH--HHHHHHHHHHH
Confidence            4568999999999999999999876    57899999999999999999999999877      233  33456779999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcc-----hh--hhc--Ccc-hHHHh----------------hchh---hhh--hhc---
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQ-----GE--AFN--GKP-TKTAR----------------SHGK---KFQ--VSV---  118 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~-----~~--~~~--~~~-~~~~~----------------~~~~---~~~--~~l---  118 (261)
                      |...|++++|+..|++++++.+.     ..  .+.  +.. .....                ....   .+.  +.+   
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~  215 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD  215 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998421     11  111  100 00000                0010   011  111   


Q ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          119 ---RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       119 ---~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                         .|....++.++|.+|..+|++++|+.+|++++.+.|+..      . +.++|.+|..+|++++|+.+|++++...
T Consensus       216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence               133455888999999999999999999999999987543      2 4688999999999999999999999983

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.66  E-value=3.9e-15  Score=120.84  Aligned_cols=141  Identities=17%  Similarity=0.105  Sum_probs=116.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|++++  +| .+.++.++|.++..+|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus        16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A   90 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYYQTEKYDLA   90 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHcccHHHH
Confidence            456899999999999996  44 678999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      +..|++++++.|.......          ....+...|..+.++.++|.+|..+|++++|+..|+++++++|++..
T Consensus        91 ~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A           91 IKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            9999999998653211000          00012344667789999999999999999999999999999998753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.65  E-value=1.7e-15  Score=114.75  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=94.1

Q ss_pred             ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      +.+.++.+||.++..+|++++|+..|++++.++|+++  ..++.+|.+|..+|++++|+..|++++++.|....      
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~------   77 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA------   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch------
Confidence            3456788999999999999999999999999999953  45667999999999999999999999998652110      


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                             ..      +....++.++|.+|..+|++++|+..|++++..+|+..
T Consensus        78 -------~~------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  117 (127)
T 4gcn_A           78 -------DY------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE  117 (127)
T ss_dssp             -------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred             -------hh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence                   00      01245899999999999999999999999999998743

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.65  E-value=3e-15  Score=117.89  Aligned_cols=124  Identities=16%  Similarity=0.009  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ....|..+.+.|+|++|+..|+++|++.|.... .           .  .+...|.++.+|.|+|.++..+|++++|+..
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-~-----------~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~   79 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-E-----------E--AFDHAGFDAFCHAGLAEALAGLRSFDEALHS   79 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-T-----------S--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-h-----------h--hhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            345788889999999999999999999763100 0           0  0011123456999999999999999999999


Q ss_pred             HHHHHhh-------CCCchh-h----hhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHH
Q 024858          146 YQKAQMI-------DPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL  203 (261)
Q Consensus       146 ~~~al~~-------~P~~~~-~----~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l  203 (261)
                      |.+||++       +|++.. |    +++|.+|..+|++++|+..|++++...+.+..-.+...++....
T Consensus        80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            9999999       999998 9    99999999999999999999999998433333334444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.64  E-value=9.6e-15  Score=107.20  Aligned_cols=120  Identities=25%  Similarity=0.243  Sum_probs=104.2

Q ss_pred             CCCh-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           23 GDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        23 ~p~~-~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      +|.. ..++..+|.++...|++++|+..+++++...|++.  .....++.+|...|++++|+..+++++++.        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------   73 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------   73 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------
Confidence            4544 77899999999999999999999999999999843  355668999999999999999999998863        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  170 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g  170 (261)
                                        |+++.++.++|.+|...|++++|+..|++++..+|++.. +.++|.++..+|
T Consensus        74 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           74 ------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                              345678999999999999999999999999999999998 889999987765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=1.3e-14  Score=119.29  Aligned_cols=167  Identities=9%  Similarity=-0.014  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC----CHHHHHHHH
Q 024858           11 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG----KVEEQIEML   86 (261)
Q Consensus        11 ~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g----~~~eA~~~~   86 (261)
                      +|+.+|+++.+.  .++.+++.||.++...+++++|+..|+++...+..    ...+.||.+|.. |    ++++|+..|
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            467788887764  66777888888888888888888888887765432    234457777776 6    788888888


Q ss_pred             HHHHHhhcchhhhc-CcchHH----Hhhch---hhhhhhcCCCc----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 024858           87 KRKLRLIYQGEAFN-GKPTKT----ARSHG---KKFQVSVRQET----SRLLGNLAWAYMQ----KTNFMAAEVVYQKAQ  150 (261)
Q Consensus        87 ~~al~l~~~~~~~~-~~~~~~----~~~~~---~~~~~~l~p~~----~~~~~~Lg~~~~~----~g~~~eA~~~~~~al  150 (261)
                      +++.+...+...++ +.....    .....   ..+...++.++    +.++++||.+|..    .+++++|+.+|++++
T Consensus        77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            88766432211111 000000    00000   01111222223    7788888888888    788888888888888


Q ss_pred             hhCCCchh-hhhHHHHHHHc-C-----CHHHHHHHHHHHHhC
Q 024858          151 MIDPDANK-ACNLGLCLIKR-T-----RYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~-g-----~~~eA~~~~~~~l~~  185 (261)
                      +. |.++. .++||.+|... |     ++++|+.+|+++...
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            87 66666 77888888764 3     788888888888875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=2.5e-17  Score=145.23  Aligned_cols=165  Identities=19%  Similarity=0.100  Sum_probs=133.1

Q ss_pred             cCCHHHHHHHHHH----HHHcCCChHHHHHHHHHHHH------------HcCCcHHHHHHHHHHHhcCCchhHHHHHHHH
Q 024858            6 QKDPEAAIVLFWK----AINAGDRVDSALKDMAVVMK------------QLDRSEEAIEAIKSFRGLCSKQSQESLDNVL   69 (261)
Q Consensus         6 ~~~~~~A~~~~~~----al~~~p~~~~al~~Lg~~~~------------~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L   69 (261)
                      .+.+++|+..+..    ++.++|..  ++...|....            .++++++|+..++.++...|++  ......+
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~--a~~~~~~  153 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ--STIVKER  153 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH--HHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH--HHHHHHH
Confidence            3468888888888    88888886  5555665443            5678888999998888888874  3456679


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |.+|.+.|++++|+..|++++++.|.......           .....+.|....++.|+|.+|..+|++++|+..|+++
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-----------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-----------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-----------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-----------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999998653211000           0001122334679999999999999999999999999


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++|++.. ++++|.+|..+|++++|+..|++++..
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999 999999999999999999999999998

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=8e-15  Score=109.76  Aligned_cols=95  Identities=17%  Similarity=0.074  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|..+.+.|++++|+..|++++++.                          |+++.++.++|.+|..+|++++|+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~~   59 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNRAAALAKLMSFPEAIA   59 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHhcCHHHHHH
Confidence            45568999999999999999999999974                          4577899999999999999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|+++++++|++.. ++++|.++..+|++++|+..|++++..
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            99999999999999 999999999999999999999999997

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=3e-15  Score=127.82  Aligned_cols=183  Identities=19%  Similarity=0.202  Sum_probs=134.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYK   74 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~   74 (261)
                      .+..|++++|+.+|++++..+|++    ..++..+|.++...|++++|+..+++++.+.+.    .........+|.+|.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            467899999999999999999987    467889999999999999999999998876321    112345677999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhcchh-------hhc--Ccc-hHHHh-------------------hchh---hhh--hhc--
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGE-------AFN--GKP-TKTAR-------------------SHGK---KFQ--VSV--  118 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~-------~~~--~~~-~~~~~-------------------~~~~---~~~--~~l--  118 (261)
                      ..|++++|+..+++++++.+...       .+.  +.. .....                   ....   .+.  +.+  
T Consensus        95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~  174 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT  174 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999854211       111  000 00000                   0000   010  111  


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          119 ----RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       119 ----~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                          .|....++.++|.+|..+|++++|+..|++++.+.|...      . +.++|.++...|++++|+.++++++..
T Consensus       175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                233455788888888888999999999999888876432      2 457888888889999999999888887

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=3.4e-15  Score=131.68  Aligned_cols=184  Identities=18%  Similarity=0.197  Sum_probs=140.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYK   74 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~   74 (261)
                      .+..|++++|+.+|++++..+|++    ..++..+|.++...|++++|+..+++++.+.+.    .........+|.+|.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            456899999999999999999987    467889999999999999999999998776321    112345677999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhcchh-------hhc--Ccc-hHHHh-------------------hchh---hhh--hhc--
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGE-------AFN--GKP-TKTAR-------------------SHGK---KFQ--VSV--  118 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~-------~~~--~~~-~~~~~-------------------~~~~---~~~--~~l--  118 (261)
                      ..|++++|+..+++++++.+...       .+.  +.. .....                   ....   .+.  +.+  
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865321       111  100 00000                   0010   011  111  


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          119 ----RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       119 ----~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                          .|....++.++|.+|..+|++++|+.+|++++++.|+..      . +.++|.++..+|++++|+.++++++...
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence                234456889999999999999999999999999976543      3 4689999999999999999999999983

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.63  E-value=9.3e-15  Score=136.88  Aligned_cols=133  Identities=14%  Similarity=0.064  Sum_probs=122.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.++++++++|+++  .....+|.+|...|++++|
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP--GIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45679999999999999999999999999999999999999999999999999999853  4566799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchh-
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK---TNFMAAEVVYQKAQMIDPDANK-  158 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~---g~~~eA~~~~~~al~~~P~~~~-  158 (261)
                      ++.|++++++.                          |+++.++.++|.++..+   |++++|+..|+++++.+|++.. 
T Consensus       111 ~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  164 (568)
T 2vsy_A          111 AAAYTRAHQLL--------------------------PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP  164 (568)
T ss_dssp             HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred             HHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence            99999999874                          45678999999999999   9999999999999999999987 


Q ss_pred             hhhHH
Q 024858          159 ACNLG  163 (261)
Q Consensus       159 ~~~L~  163 (261)
                      +..++
T Consensus       165 ~~~l~  169 (568)
T 2vsy_A          165 FAFLS  169 (568)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            66666

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=1.4e-15  Score=134.15  Aligned_cols=157  Identities=16%  Similarity=0.087  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCC
Q 024858            9 PEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         9 ~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~   78 (261)
                      +++|+.+|.+++..      .|....++.++|.++..+|++++|+..+++++.+.|..    ........+|.+|...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            89999999999875      45567789999999999999999999999999876642    112355679999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--  156 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--  156 (261)
                      +++|+..|++++++.+..              +..      +....++.++|.+|..+|++++|+..|++++.+.+..  
T Consensus       243 ~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  302 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQL--------------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND  302 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhC--------------cCc------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999985411              000      0124688999999999999999999999999986543  


Q ss_pred             ----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          157 ----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       157 ----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                          .. +.++|.++..+|++++|+.++++++..
T Consensus       303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                34 678999999999999999999999986

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.63  E-value=6e-15  Score=111.41  Aligned_cols=106  Identities=13%  Similarity=0.006  Sum_probs=77.2

Q ss_pred             cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      .+|..+.++..+|.++...|++++|+..|++++..+|+++  .....+|.+|...|++++|+..+++++++.        
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------   73 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD--------   73 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------
Confidence            4566677777778888888888888888877777777742  345557777777777777777777777763        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                                        |+++.++.++|.+|..+|++++|+..|++++.++|+
T Consensus        74 ------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           74 ------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence                              345667777777777777777777777777777776

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.62  E-value=4.9e-15  Score=112.22  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....||..|.++|+|++|+..|++++++.                          |+++.++.|+|.+|..+|++++|+.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------------------------p~~~~~~~nlg~~~~~~~~~~~A~~   63 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--------------------------PSNITFYNNKAAVYFEEKKFAECVQ   63 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHhHHHHHHHhhhHHHHHH
Confidence            34568999999999999999999999974                          4677899999999999999999999


Q ss_pred             HHHHHHhhCCCch-------h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDAN-------K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~-------~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|+++++++|++.       . +.++|.++..+|++++|+..|++++..
T Consensus        64 ~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999998764       3 568999999999999999999999996

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.62  E-value=4.5e-15  Score=116.89  Aligned_cols=120  Identities=10%  Similarity=-0.014  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-------hh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-------QS---QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG   96 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-------~~---~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~   96 (261)
                      +..+.+.|..+.+.|++++|+..|++++.++|+       +.   ....+.++|.++.+.|++++|+..|+++|++..  
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n--   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN--   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh--
Confidence            556888999999999999999999999999998       31   122566799999999999999999999999721  


Q ss_pred             hhhcCcchHHHhhchhhhhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH
Q 024858           97 EAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  165 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~----~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~  165 (261)
                              +         .++++|+++.+|    +++|.++..+|+++||+..|+++++++|++.. .-.+..+
T Consensus        89 --------~---------~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           89 --------R---------RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             --------H---------HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             --------c---------cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                    0         034567888999    99999999999999999999999999999886 5555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=3e-14  Score=111.75  Aligned_cols=98  Identities=18%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858           63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  142 (261)
Q Consensus        63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA  142 (261)
                      ......+|.+|...|++++|+..|++++++.                          |+++.++.++|.+|..+|++++|
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~A   64 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------------------------PANPIYLSNRAAAYSASGQHEKA   64 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CcCHHHHHHHHHHHHHccCHHHH
Confidence            3455669999999999999999999999974                          45778999999999999999999


Q ss_pred             HHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          143 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       143 ~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      +..|++++.++|++.. ++++|.+|..+|++++|+..|++++...
T Consensus        65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999 9999999999999999999999999973

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.62  E-value=2.6e-15  Score=133.52  Aligned_cols=182  Identities=17%  Similarity=0.150  Sum_probs=140.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~l   72 (261)
                      ....|++++|+.+|++++..      +|....++..+|.++..+|++++|+..+++++.+.+.    .........+|.+
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  175 (411)
T 4a1s_A           96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV  175 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            45679999999999999986      6778899999999999999999999999999887432    1123456779999


Q ss_pred             HHHcCC-----------------HHHHHHHHHHHHHhhcch-----h--hhcCcchHHHhhchh------hhh--hhcCC
Q 024858           73 YKKCGK-----------------VEEQIEMLKRKLRLIYQG-----E--AFNGKPTKTARSHGK------KFQ--VSVRQ  120 (261)
Q Consensus        73 y~~~g~-----------------~~eA~~~~~~al~l~~~~-----~--~~~~~~~~~~~~~~~------~~~--~~l~p  120 (261)
                      |...|+                 +++|+..|++++++....     .  .+. .........+.      .+.  +.+.|
T Consensus       176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~  254 (411)
T 4a1s_A          176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG-NLGNTYYLLGDFQAAIEHHQERLRIAR  254 (411)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            999999                 999999999999874211     0  110 00000000110      111  23323


Q ss_pred             Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          121 ET------SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-------ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       121 ~~------~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-------~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.      ..++.++|.+|..+|++++|+..|++++.+.|+...       +.++|.++..+|++++|+.++++++..
T Consensus       255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            22      238899999999999999999999999999998873       357999999999999999999999997

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=5e-15  Score=111.29  Aligned_cols=91  Identities=15%  Similarity=0.072  Sum_probs=60.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      +|..+.+.|++++|+..|++++++.                          |+++.+|.++|.++..+|++++|+..|++
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   76 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLAIIALNH   76 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5566666677777777776666653                          34556666677777777777777777777


Q ss_pred             HHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          149 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       149 al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++++|++.. +.+||.++..+|++++|+..|++++..
T Consensus        77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7777776666 666777777777777777777766665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.61  E-value=6.6e-15  Score=115.30  Aligned_cols=31  Identities=19%  Similarity=0.078  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   56 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~   56 (261)
                      .+..+..+|..+...|++++|+..|++++.+
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~   40 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR   40 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456777777777777777777777777776

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=4.1e-14  Score=102.90  Aligned_cols=113  Identities=14%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      .+.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|+..+++++++.            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------   68 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------   68 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhC------------
Confidence            456788889999999999999999999999888743  345568888889999999999999988863            


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  166 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l  166 (261)
                                    |+++.++.++|.++..+|++++|+..|+++++.+|++.. +..++.+.
T Consensus        69 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           69 --------------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             --------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence                          345678889999999999999999999999999998887 77777664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=1.2e-14  Score=129.01  Aligned_cols=160  Identities=11%  Similarity=-0.034  Sum_probs=128.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHc-------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINA-------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLID   71 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~-------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~   71 (261)
                      ....|++++|+.+|.+|+..       .+....++.++|.++..+|++++|+..+++++.+.|..    ........+|.
T Consensus       153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  232 (383)
T 3ulq_A          153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL  232 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            45679999999999999985       33456789999999999999999999999999876531    11234566999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +|..+|++++|+..|++++++....              +      -.|..+.++.++|.+|..+|++++|+.+|++++.
T Consensus       233 ~y~~~g~~~~A~~~~~~al~~~~~~--------------~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          233 CKNSQSQYEDAIPYFKRAIAVFEES--------------N------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT--------------T------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhh--------------c------cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999974210              0      0134567899999999999999999999999999


Q ss_pred             hCC-----Cchh-hhhHHHHHHHcCC---HHHHHHHHHHH
Q 024858          152 IDP-----DANK-ACNLGLCLIKRTR---YNEARSVLEDV  182 (261)
Q Consensus       152 ~~P-----~~~~-~~~L~~~l~~~g~---~~eA~~~~~~~  182 (261)
                      +.+     .... ...||.++...|+   +++|+.++++.
T Consensus       293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          293 YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            853     3333 4678999999999   77777777764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.60  E-value=1.3e-14  Score=119.39  Aligned_cols=138  Identities=12%  Similarity=-0.039  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhc-CcchHHH---hhch---hhhhh
Q 024858           44 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKTA---RSHG---KKFQV  116 (261)
Q Consensus        44 ~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~-~~~~~~~---~~~~---~~~~~  116 (261)
                      .+|+..|+++...+..    .....||.+|...|++++|+..|+++++...+...++ +......   ....   ..+..
T Consensus         3 ~eA~~~~~~aa~~g~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDR----RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEK   78 (212)
T ss_dssp             -CTTHHHHHHHHTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            4688889988876322    3455689999999999999999999998743322211 1000000   0001   11224


Q ss_pred             hcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--chh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          117 SVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       117 ~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~--~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      .++++++.++++||.+|..    .+++++|+.+|+++++..|.  ++. +++||.+|..    .+++++|+.+|++++..
T Consensus        79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            5678889999999999988    89999999999999999884  466 8899999999    88999999999999885

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=4.9e-15  Score=127.23  Aligned_cols=106  Identities=13%  Similarity=0.012  Sum_probs=96.5

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      |..+.++..+|.++...|++++|+..|++++..+|+++  .+...+|.+|...|++++|+..|++++++.          
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------   68 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD----------   68 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----------
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------
Confidence            56788999999999999999999999999999999853  456679999999999999999999999874          


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                                      |+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus        69 ----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           69 ----------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence                            46778999999999999999999999999999999774

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.60  E-value=1.2e-14  Score=126.04  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=128.1

Q ss_pred             hcCCHHHHHHHHHHHHHc--------CCChHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINA--------GDRVDS---ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVL   69 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~--------~p~~~~---al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L   69 (261)
                      ..|++++|..+++++.+.        .++...   .+...|.++..+|++++|+..|.+++.+.+..    ......+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467889999999988762        344443   35567899999999999999999998886531    122345668


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |.+|..+|++++|+..|++++++...              .+...      ....++.++|.+|.. |++++|+.+|++|
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~--------------~g~~~------~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVE--------------NGTPD------TAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHT--------------TTCHH------HHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHH--------------cCCHH------HHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            99999999999999999999998421              00000      124588999999999 9999999999999


Q ss_pred             HhhCCCc------hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMIDPDA------NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~~P~~------~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+.|+.      .. +.++|.+|..+|++++|+.+|++++..
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9998754      34 679999999999999999999999985

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4e-14  Score=107.61  Aligned_cols=122  Identities=12%  Similarity=0.004  Sum_probs=103.4

Q ss_pred             HcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh
Q 024858           21 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF   99 (261)
Q Consensus        21 ~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~   99 (261)
                      ..+|.....+..+|..+...|++++|+..|++++..+|++. .......+|.+|...|++++|+..+++++++.      
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------   95 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------   95 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------
Confidence            34577888999999999999999999999999999999731 13456668999999999999999999998874      


Q ss_pred             cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH
Q 024858          100 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  168 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~  168 (261)
                                          |+++.++.++|.+|..+|++++|+..|++++.++|++.. +..++.+...
T Consensus        96 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           96 --------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             --------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             --------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence                                356778999999999999999999999999999999988 7777766543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=1.1e-14  Score=109.27  Aligned_cols=94  Identities=17%  Similarity=0.022  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD-------NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~-------~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      .+..+|.++.+.|++++|+..++++++         ..       ..+|.+|...|++++|+..|++++++.        
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~---------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ---------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH---------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence            356677777777777777777766552         24       457777777777777777777777763        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                                        |+++.++.+||.+|..+|++++|+..|+++++++|++.
T Consensus        82 ------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           82 ------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence                              35667777777777777777777777777777777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=7.6e-15  Score=125.26  Aligned_cols=157  Identities=17%  Similarity=0.091  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCC
Q 024858            9 PEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         9 ~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~   78 (261)
                      +++|+.+|.+++..      .|....++..+|.++...|++++|+..+++++...|..    ........+|.+|...|+
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            88999999998864      34456789999999999999999999999998876641    112255678999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--  156 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~--  156 (261)
                      +++|+..+++++.+.+..              +..      +....++.++|.+|..+|++++|+..|++++.+.|+.  
T Consensus       239 ~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQL--------------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhh--------------cch------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999985311              000      0124588999999999999999999999999986643  


Q ss_pred             ----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          157 ----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       157 ----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                          .. +..+|.++..+|++++|..++++++..
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                23 568999999999999999999999986

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.59  E-value=8.1e-14  Score=122.85  Aligned_cols=165  Identities=13%  Similarity=0.007  Sum_probs=133.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--h--HHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QESLDNVLIDLY   73 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~-----~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~--~~~~~~~L~~ly   73 (261)
                      .+..|++++|..++++++...|...     .++..+|.++...|++++|+..+++++.+.|..  .  .....+.+|.+|
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  103 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  103 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            4568999999999999998766542     367889999999999999999999999876642  1  122346689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ...|++++|+..|++++++.+..              +..    -.|....++.++|.+|..+|++++|+.++++++.+.
T Consensus       104 ~~~G~~~~A~~~~~~al~~~~~~--------------~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A          104 FAQGFLQTAWETQEKAFQLINEQ--------------HLE----QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT--------------TCT----TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHh--------------ccc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            99999999999999999974310              000    001234578899999999999999999999999998


Q ss_pred             CCc-----hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~-----~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |..     .. +.++|.++...|++++|..++++++..
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            863     23 668999999999999999999999874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=7.7e-14  Score=129.46  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=133.1

Q ss_pred             cCCHH-------HHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC
Q 024858            6 QKDPE-------AAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG   77 (261)
Q Consensus         6 ~~~~~-------~A~~~~~~al~-~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g   77 (261)
                      .|+++       +|...|++|++ ..|+...++..+|.++...|++++|+..|++++...|.++ ..++..++.++.+.|
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~  370 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAE  370 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhc
Confidence            58876       89999999997 8999999999999999999999999999999999999753 235666888889999


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCc
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA-YMQKTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~-~~~~g~~~eA~~~~~~al~~~P~~  156 (261)
                      ++++|..+|+++++..|                          ....++...+.+ +..+|++++|...|+++++.+|++
T Consensus       371 ~~~~A~~~~~~Al~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          371 GIKSGRMIFKKAREDAR--------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             HHHHHHHHHHHHHTCTT--------------------------CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhccC--------------------------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence            99999999999998632                          122344444444 457999999999999999999999


Q ss_pred             hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          157 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       157 ~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +. |.+++.++.+.|++++|..+|++++..
T Consensus       425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            99 999999999999999999999999997

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.58  E-value=7e-15  Score=118.95  Aligned_cols=149  Identities=15%  Similarity=0.014  Sum_probs=99.7

Q ss_pred             ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           25 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        25 ~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      +.+......+......|++++|.+.++......+..  ......+|..+...|++++|+..|++++++.|....+...  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--   77 (198)
T 2fbn_A            2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--   77 (198)
T ss_dssp             --------------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--
T ss_pred             CCcccccchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--
Confidence            445556667888888899999988876554444442  2345568999999999999999999999986532111100  


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                      .. ......+       ...++.++|.+|..+|++++|+..|++++.++|++.. ++++|.+|..+|++++|+..|++++
T Consensus        78 ~~-~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           78 IL-LDKKKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HH-HHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hH-HHHHHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            00 0000000       1368999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hC
Q 024858          184 YG  185 (261)
Q Consensus       184 ~~  185 (261)
                      ..
T Consensus       150 ~~  151 (198)
T 2fbn_A          150 SL  151 (198)
T ss_dssp             HH
T ss_pred             HH
Confidence            97

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.58  E-value=1.1e-13  Score=122.76  Aligned_cols=158  Identities=11%  Similarity=0.086  Sum_probs=120.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLID   71 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p-------~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~   71 (261)
                      ....|+++.|+.+|.+|+...+       ....++.++|.++..+|++++|+..+++++.+.+.    .......+.+|.
T Consensus       151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  230 (378)
T 3q15_A          151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN  230 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567999999999999997432       34678889999999999999999999999886432    112335567999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      +|..+|++++|+..|++++++....                     -.|..+.++.++|.+|..+|++++|+.+|+++++
T Consensus       231 ~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          231 SYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999963200                     1133467899999999999999999999999999


Q ss_pred             hCCC-----chh-hhhHHHHHHHcCC---HHHHHHHHHH
Q 024858          152 IDPD-----ANK-ACNLGLCLIKRTR---YNEARSVLED  181 (261)
Q Consensus       152 ~~P~-----~~~-~~~L~~~l~~~g~---~~eA~~~~~~  181 (261)
                      +.+.     ... ...++.++...|+   +.+|+.++++
T Consensus       290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            8543     222 3345555555555   5555555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.57  E-value=6e-14  Score=108.69  Aligned_cols=123  Identities=11%  Similarity=-0.021  Sum_probs=107.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus        23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A  100 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKFRAA  100 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhccHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  3556689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN--LAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~--Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      +..|++++++.|                          +++.++.+  ++..+..+|++++|+..+.++..+.
T Consensus       101 ~~~~~~a~~~~p--------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          101 LRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            999999998753                          34556644  4555889999999999999987653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.57  E-value=8.8e-16  Score=141.75  Aligned_cols=127  Identities=17%  Similarity=0.075  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      .+.++..+|.++.++|++++|++.|+++++++|++  ......+|.+|.++|++++|+..|++++++.            
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------   70 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELD------------   70 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------
Confidence            45567778899999999999999999999999985  3456679999999999999999999999874            


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH--HHHcCCHHHHHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC--LIKRTRYNEARSVLE  180 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~--l~~~g~~~eA~~~~~  180 (261)
                                    |+++.++.++|.+|..+|++++|+..|+++++++|++.. +.+++.+  +.++|++++|+..++
T Consensus        71 --------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           71 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                          456789999999999999999999999999999999998 8888888  999999999999999

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.56  E-value=6.3e-15  Score=136.03  Aligned_cols=129  Identities=12%  Similarity=-0.005  Sum_probs=111.1

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +.+..|++++|+.+|+++++.+|+++.++.++|.++.++|++++|++.++++++++|+++  ...+.+|.+|..+|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHH
Confidence            356789999999999999999999999999999999999999999999999999999853  355669999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------H
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA--YMQKTNFMAAEVVYQ-----------K  148 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~--~~~~g~~~eA~~~~~-----------~  148 (261)
                      |++.|++++++.|                          +++.++.++|.+  +..+|++++|+..|+           +
T Consensus        93 A~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  146 (477)
T 1wao_1           93 ALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE  146 (477)
T ss_dssp             HHHHHHHHHHHST--------------------------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS
T ss_pred             HHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh
Confidence            9999999999743                          455688889888  899999999999999           9


Q ss_pred             HHhhCCCchh
Q 024858          149 AQMIDPDANK  158 (261)
Q Consensus       149 al~~~P~~~~  158 (261)
                      ++.++|+...
T Consensus       147 al~~~~~~~~  156 (477)
T 1wao_1          147 SMTIEDEYSG  156 (477)
T ss_dssp             SCCCCTTCCS
T ss_pred             hccccccccc
Confidence            9999887653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.56  E-value=5.7e-14  Score=104.04  Aligned_cols=125  Identities=8%  Similarity=0.062  Sum_probs=102.2

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      |..+.++..+|.++...|++++|+..+++++..+|.++  .....+|.+|...|++++|+..|++++.+.|...      
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------   72 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR------   72 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST------
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc------
Confidence            34577899999999999999999999999999999853  4566799999999999999999999999854110      


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  170 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g  170 (261)
                             ...      +..+.++.++|.+|..+|++++|+..|++++.++|+ +. ...++.+....+
T Consensus        73 -------~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           73 -------EDY------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             -------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             -------hhH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence                   000      001568999999999999999999999999999995 55 777777765443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.56  E-value=7.7e-15  Score=129.43  Aligned_cols=137  Identities=14%  Similarity=0.077  Sum_probs=89.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ---------------ESLDNVLIDLYKKCGKVEEQIEMLK   87 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~---------------~~~~~~L~~ly~~~g~~~eA~~~~~   87 (261)
                      .+..+..+..+|..+...|++++|+..|++++.+.|++..               ..+++.+|.+|.+.|++++|+..|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456778999999999999999999999999999998431               0256678999999999999999999


Q ss_pred             HHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHH-
Q 024858           88 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC-  165 (261)
Q Consensus        88 ~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~-  165 (261)
                      +++++.                          |+++.+++++|.+|..+|++++|+..|+++++++|++.. +.+|+.+ 
T Consensus       255 ~al~~~--------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          255 IVLTEE--------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             HHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            999874                          456789999999999999999999999999999999998 8888888 


Q ss_pred             HHHcCCHHHHHHHHHHHHhC
Q 024858          166 LIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       166 l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ....+..+++...|++++..
T Consensus       309 ~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          309 EQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHhhCC
Confidence            45567888888999998886

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.55  E-value=2.4e-14  Score=103.34  Aligned_cols=67  Identities=12%  Similarity=0.040  Sum_probs=31.5

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      |+++.++..+|.++...|++++|+..+++++..+|.+.  .....+|.+|...|++++|+..|++++++
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            44444444455555555555555555555555444421  12233444444555555555555554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.55  E-value=1.9e-13  Score=106.90  Aligned_cols=113  Identities=15%  Similarity=0.067  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      .....|..+.+.|++++|+..|++++.+.+...... .+.       ......+.|....++.|+|.+|..+|++++|+.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE-KPG-------EPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS-CTT-------SHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            345588999999999999999999999843110000 000       000012345667899999999999999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+++++.++|+++. ++.+|.+|..+|++++|+..|++++..
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            99999999999999 999999999999999999999999998

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.55  E-value=1.4e-13  Score=102.72  Aligned_cols=104  Identities=12%  Similarity=0.021  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      ++..+|.++...|++++|+..+++++..+|++.. ......+|.+|...|++++|+..|+++++..|             
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-------------   70 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-------------   70 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-------------
Confidence            4566777777777777777777777777776321 12344567777777777777777777776543             


Q ss_pred             hhchhhhhhhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          108 RSHGKKFQVSVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~---~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                                   ++   +.++.++|.+|..+|++++|+..|++++...|++..
T Consensus        71 -------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           71 -------------THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             -------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             -------------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence                         22   556777777777777777777777777777777665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.55  E-value=2.9e-13  Score=125.58  Aligned_cols=172  Identities=12%  Similarity=-0.009  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------cCCcH-------HHHHHHHHHHh-cCCchhHHHHHHHHHHHHH
Q 024858           10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQ-------LDRSE-------EAIEAIKSFRG-LCSKQSQESLDNVLIDLYK   74 (261)
Q Consensus        10 ~~A~~~~~~al~~~p~~~~al~~Lg~~~~~-------~g~~~-------eAi~~~~~~~~-~~P~~~~~~~~~~L~~ly~   74 (261)
                      .+++..|++++..+|.++++|..+|..+.+       .|+++       +|+..|+++++ ..|++  ..++..++.++.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--~~l~~~~~~~~~  332 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEE  332 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence            478889999999999999999999999986       79987       99999999997 89984  346667899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET-SRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~-~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      +.|++++|..+|++++++.|                          ++ ..+|.++|.++.++|++++|...|++|++..
T Consensus       333 ~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIED--------------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSS--------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hcCCHHHHHHHHHHHhCccc--------------------------cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            99999999999999999743                          33 3589999999999999999999999999998


Q ss_pred             CCchh-hhhHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHHHHhc
Q 024858          154 PDANK-ACNLGLC-LIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESK  209 (261)
Q Consensus       154 P~~~~-~~~L~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~l~~~  209 (261)
                      |.+.. +...+.+ +...|++++|..+|++++...+..+.          ..+..++|..++......
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            88766 5544443 45799999999999999997332211          235667788888776544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.54  E-value=9.6e-14  Score=124.09  Aligned_cols=124  Identities=15%  Similarity=0.055  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------------cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRG----------------LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL   90 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~----------------~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al   90 (261)
                      +..+..+|..+...|++++|+..|+++++                ..|.  ...+++.+|.+|.++|++++|+..|++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            55688999999999999999999999998                5555  23456678999999999999999999998


Q ss_pred             HhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858           91 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  169 (261)
Q Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~  169 (261)
                      ++.                          |+++.+++++|.+|..+|++++|+..|++|++++|++.. +..|+.++..+
T Consensus       301 ~~~--------------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          301 EID--------------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             TTC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhC--------------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            874                          456789999999999999999999999999999999998 88999999999


Q ss_pred             CCHHHHHHH
Q 024858          170 TRYNEARSV  178 (261)
Q Consensus       170 g~~~eA~~~  178 (261)
                      ++++++...
T Consensus       355 ~~~~~a~k~  363 (370)
T 1ihg_A          355 KAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            988888653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=1.8e-14  Score=113.22  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK   87 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~   87 (261)
                      .+++|+..|+++++.+|+++++|.++|.++..+++++.+...+                          +.+++|+..|+
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eAi~~le   70 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEAITKFE   70 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHHHHHHH
Confidence            4555666666666666666666666666665555444333221                          12678999999


Q ss_pred             HHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCc
Q 024858           88 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-----------NFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        88 ~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-----------~~~eA~~~~~~al~~~P~~  156 (261)
                      ++|+++                          |++++++++||.+|..+|           ++++|+.+|++|++++|++
T Consensus        71 ~AL~ld--------------------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           71 EALLID--------------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhC--------------------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            988874                          467889999999998875           8999999999999999998


Q ss_pred             hh-hhhHH
Q 024858          157 NK-ACNLG  163 (261)
Q Consensus       157 ~~-~~~L~  163 (261)
                      .. +.++.
T Consensus       125 ~~y~~al~  132 (158)
T 1zu2_A          125 THYLKSLE  132 (158)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            75 44433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.53  E-value=7e-13  Score=115.57  Aligned_cols=150  Identities=11%  Similarity=-0.022  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----HHc---CC
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY----KKC---GK   78 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly----~~~---g~   78 (261)
                      ..++|+.++.++|.++|++..+|+.-+.++...|  +++++++.++.++..+|++.  .+++.-+.++    ...   ++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHHhccccCC
Confidence            3467999999999999999999999999999999  99999999999999999852  2333344444    566   89


Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCc
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--AAEVVYQKAQMIDPDA  156 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~--eA~~~~~~al~~~P~~  156 (261)
                      ++++++.+.++++++|.                          +..+|.+.++++...|+++  +++.++.++++.+|.|
T Consensus       126 ~~~EL~~~~~~l~~~pk--------------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          126 PYREFDILEAMLSSDPK--------------------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             THHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence            99999999999998652                          3334444444444444444  4444444444444444


Q ss_pred             hh-hhhHHHHHHHcCC------HHHHHHHHHHHHhC
Q 024858          157 NK-ACNLGLCLIKRTR------YNEARSVLEDVLYG  185 (261)
Q Consensus       157 ~~-~~~L~~~l~~~g~------~~eA~~~~~~~l~~  185 (261)
                      .. |.+.+.++...|+      +++++.++.+++..
T Consensus       180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence            44 4444444444444      44444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.53  E-value=2.6e-13  Score=103.61  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      ...++..+|.++...|++++|+..+++++...|..    ........+|.+|...|++++|+..+++++++.+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----   82 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-----   82 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----
Confidence            35678899999999999999999999999876641    112355679999999999999999999999985311     


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------hh-hhhHHHHHHHcCCHHH
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNE  174 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~-~~~L~~~l~~~g~~~e  174 (261)
                               +..      +....++.++|.++..+|++++|+..+++++.+.+..      .. +.++|.++..+|++++
T Consensus        83 ---------~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  147 (164)
T 3ro3_A           83 ---------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  147 (164)
T ss_dssp             ---------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ---------CCc------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence                     000      0124578999999999999999999999999874322      23 5689999999999999


Q ss_pred             HHHHHHHHHhC
Q 024858          175 ARSVLEDVLYG  185 (261)
Q Consensus       175 A~~~~~~~l~~  185 (261)
                      |+..+++++..
T Consensus       148 A~~~~~~a~~~  158 (164)
T 3ro3_A          148 AMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.52  E-value=2.9e-13  Score=101.99  Aligned_cols=95  Identities=18%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|.++...|++++|+..|++++++.                          |+++.++.++|.+|..+|++++|+.
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~   64 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQPEQALA   64 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------cCcHHHHHHHHHHHHHhcCHHHHHH
Confidence            45568999999999999999999999974                          4567899999999999999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++++.++|+++. ++++|.++..+|++++|+..|++++..
T Consensus        65 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           65 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999 999999999999999999999999996

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=1.1e-13  Score=99.78  Aligned_cols=102  Identities=14%  Similarity=0.028  Sum_probs=90.9

Q ss_pred             CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc
Q 024858           57 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  136 (261)
Q Consensus        57 ~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~  136 (261)
                      +|+++  .....+|.+|...|++++|+..|++++++.                          |+++.++.++|.+|..+
T Consensus         2 ~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~~a~~~~~~   53 (112)
T 2kck_A            2 VDQNP--EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------PEESKYWLMKGKALYNL   53 (112)
T ss_dssp             CCSST--TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHT
T ss_pred             CCCcH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------cCCHHHHHHHHHHHHHc
Confidence            46533  234558899999999999999999999874                          35677899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC--chh-hhhHHHHHHHc-CCHHHHHHHHHHHHhCC
Q 024858          137 TNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIKR-TRYNEARSVLEDVLYGR  186 (261)
Q Consensus       137 g~~~eA~~~~~~al~~~P~--~~~-~~~L~~~l~~~-g~~~eA~~~~~~~l~~~  186 (261)
                      |++++|+..|+++++++|+  +.. +.++|.++... |++++|+..+++++...
T Consensus        54 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             cCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            9999999999999999999  888 99999999999 99999999999999973

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=1.6e-12  Score=94.25  Aligned_cols=95  Identities=19%  Similarity=0.163  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|.++...|++++|+..|++++...                          |+++.++.++|.++..+|++++|+.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~~   59 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------PHNHVLYSNRSAAYAKKGDYQKAYE   59 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHhhccHHHHHH
Confidence            44568899999999999999999999874                          3567899999999999999999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++++..+|++.. +.++|.++..+|++++|+..+++++..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            99999999999998 999999999999999999999999997

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=5.5e-14  Score=104.30  Aligned_cols=91  Identities=10%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             cCCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhh
Q 024858           40 LDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV  116 (261)
Q Consensus        40 ~g~~~eAi~~~~~~~~~~---P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~  116 (261)
                      +|++++|+..|++++.++   |++  ......+|.+|...|++++|+..|++++++.                       
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------   57 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----------------------   57 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence            455666666666666652   442  2334446666666666666666666666542                       


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          117 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       117 ~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                         |+++.++.++|.+|..+|++++|+..|++++..+|+++.
T Consensus        58 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           58 ---PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             ---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence               344556666666666666666666666666666666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.50  E-value=1.9e-12  Score=118.93  Aligned_cols=173  Identities=17%  Similarity=0.111  Sum_probs=134.0

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc----
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC----   76 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~----   76 (261)
                      ..+++++|+.+|++++..  .++.++..||.++..    .+++++|+..|+++...++.    .....|+.+|...    
T Consensus       235 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~~~~g~  308 (490)
T 2xm6_A          235 VTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS----DGQYYLAHLYDKGAEGV  308 (490)
T ss_dssp             SCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHCBTTB
T ss_pred             CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCCCC
Confidence            478999999999999875  557889999999999    99999999999999877543    2445689999988    


Q ss_pred             -CCHHHHHHHHHHHHHhhcchhhhc-CcchH------HHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 024858           77 -GKVEEQIEMLKRKLRLIYQGEAFN-GKPTK------TARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEV  144 (261)
Q Consensus        77 -g~~~eA~~~~~~al~l~~~~~~~~-~~~~~------~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~  144 (261)
                       +++++|+..|+++++..++...++ +....      ....-...+...++.+++.++++||.+|..    .+++++|+.
T Consensus       309 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  388 (490)
T 2xm6_A          309 AKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAI  388 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence             999999999999998754322221 11000      000000112234445788999999999999    899999999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      +|+++++..  ++. +++||.+|..    .+++++|..+|++++..
T Consensus       389 ~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          389 WMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            999998863  566 8899999998    89999999999999986

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.49  E-value=5.9e-14  Score=128.69  Aligned_cols=164  Identities=16%  Similarity=0.111  Sum_probs=124.4

Q ss_pred             CHHHHHHHHHH----HHHcCCChHHHHHHHHHHH------------HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 024858            8 DPEAAIVLFWK----AINAGDRVDSALKDMAVVM------------KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID   71 (261)
Q Consensus         8 ~~~~A~~~~~~----al~~~p~~~~al~~Lg~~~------------~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~   71 (261)
                      .++.|+..+.+    +|.++|..  ++.+.|...            ..++++++|+..++.++...|+.  ....+.+|.
T Consensus       201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~--a~~~~~~G~  276 (457)
T 1kt0_A          201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ--AAIVKEKGT  276 (457)
T ss_dssp             HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHH--HHHHHHHHH
Confidence            45666666666    66677764  333333221            24567778888888888877773  345666899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      .|.+.|++++|+..|++++++.|....+..   .        ....+.+....++.|+|.+|..+|++++|+..|++++.
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~--------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---K--------ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---H--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCCh---H--------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999999999998653211000   0        00111222357899999999999999999999999999


Q ss_pred             hCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          152 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                      ++|++.. ++++|.+|..+|++++|+..|++++..+
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            9999999 9999999999999999999999999983

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=6e-13  Score=98.27  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=98.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...|+++  .....+|.+|...|++++|
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A   99 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGLALSSLNKHVEA   99 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHHHHHHhCCHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  3556699999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF  139 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~  139 (261)
                      +..|++++++.                          |+++.++.++|.++..+|++
T Consensus       100 ~~~~~~~~~~~--------------------------p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          100 VAYYKKALELD--------------------------PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcC--------------------------ccchHHHHHHHHHHHHHhcC
Confidence            99999999874                          35677899999999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.48  E-value=3.7e-12  Score=116.97  Aligned_cols=172  Identities=13%  Similarity=0.059  Sum_probs=133.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cC
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CG   77 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g   77 (261)
                      .+++++|+.+|++++..  +++.++..||.+|..    .+++++|+..|+++...+..    .....||.+|..    .+
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~  129 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLP----QAQQNLGVMYHEGNGVKV  129 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCC
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCC
Confidence            78999999999999986  678899999999999    99999999999999886533    244568999998    89


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhc-CcchHHH----hhch---hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFN-GKPTKTA----RSHG---KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVV  145 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~-~~~~~~~----~~~~---~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~  145 (261)
                      ++++|+..|+++.+...+...++ +......    ....   ..+.-.++.+++.++.+||.+|..    .+++++|+.+
T Consensus       130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  209 (490)
T 2xm6_A          130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW  209 (490)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            99999999999988643221111 1000000    0000   112234456788999999999998    8999999999


Q ss_pred             HHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          146 YQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       146 ~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      |+++++.  .++. .++||.+|..    .+++++|+.+|++++..
T Consensus       210 ~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          210 YRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            9999875  4566 8899999997    89999999999999886

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=4.4e-13  Score=99.73  Aligned_cols=108  Identities=11%  Similarity=0.038  Sum_probs=96.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|
T Consensus        26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A  103 (133)
T 2lni_A           26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTRKAAALEAMKDYTKA  103 (133)
T ss_dssp             HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHHhhHHHH
Confidence            45789999999999999999999999999999999999999999999999999999853  3556699999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN  138 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~  138 (261)
                      +..|++++++.|                          ++..++.++|.++..+|+
T Consensus       104 ~~~~~~~~~~~p--------------------------~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          104 MDVYQKALDLDS--------------------------SCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHCG--------------------------GGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCC--------------------------CchHHHHHHHHHHHHhcC
Confidence            999999998743                          345688999999988775

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.48  E-value=7.4e-14  Score=103.57  Aligned_cols=88  Identities=13%  Similarity=0.154  Sum_probs=75.8

Q ss_pred             HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      .+|++++|+..|++++++.+.                       +|+++.++.+||.+|..+|++++|+..|+++++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~-----------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   58 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ-----------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP   58 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHHHHHHHHHHHcCCC-----------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            469999999999999997210                       124567999999999999999999999999999999


Q ss_pred             Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          155 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++. ++++|.++..+|++++|+..+++++..
T Consensus        59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999 999999999999999999999999997

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=1.1e-12  Score=123.42  Aligned_cols=149  Identities=9%  Similarity=-0.018  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-   77 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~----------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-   77 (261)
                      .++|+.++.++|..+|++..+|+.-+.++...|+          ++++++.+++++..+|++..  +++.-+.++.+.| 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~--aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHccc
Confidence            4568999999999999999999999999999999          99999999999999999532  3444677888999 


Q ss_pred             -CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Q 024858           78 -KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        78 -~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-~~~eA~~~~~~al~~~P~  155 (261)
                       +++++++.+.++++++|                          .+..+|.+.|+++...| .++++++++.++++.+|+
T Consensus       123 ~~~~~el~~~~k~l~~d~--------------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          123 PNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             ccHHHHHHHHHHHHhhcc--------------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence             77999999999999743                          46679999999999999 999999999999999999


Q ss_pred             chh-hhhHHHHHHHc--------------CCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~--------------g~~~eA~~~~~~~l~~  185 (261)
                      +.. |.+.+.++...              +++++|++++.+++..
T Consensus       177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            999 99999999885              6789999999999997

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.47  E-value=2.7e-12  Score=110.10  Aligned_cols=142  Identities=14%  Similarity=0.051  Sum_probs=114.2

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhh
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS----QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF   99 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~----~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~   99 (261)
                      |.....+...+..+...|++++|++.+++++...|...    ...+...+|.+|...|++++|+..|++++++.+...  
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--  149 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--
Confidence            44455667788999999999999999999998877521    123345688899999999999999999998743110  


Q ss_pred             cCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCch----h-hhhHHHHHHHcCC
Q 024858          100 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ---MIDPDAN----K-ACNLGLCLIKRTR  171 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al---~~~P~~~----~-~~~L~~~l~~~g~  171 (261)
                                  ..      .....+++++|.+|..+|++++|+.+|++++   ...|++.    . ++++|.+|..+|+
T Consensus       150 ------------~~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~  211 (293)
T 2qfc_A          150 ------------DV------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR  211 (293)
T ss_dssp             ------------CT------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ------------ch------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh
Confidence                        00      0124589999999999999999999999999   5566643    4 7899999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 024858          172 YNEARSVLEDVLYG  185 (261)
Q Consensus       172 ~~eA~~~~~~~l~~  185 (261)
                      +++|+.++++++..
T Consensus       212 y~~Al~~~~kal~~  225 (293)
T 2qfc_A          212 YEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999985

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=2.1e-12  Score=96.14  Aligned_cols=96  Identities=23%  Similarity=0.190  Sum_probs=85.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..+|..+...|++++|+..|+++++..|..                       +..+.++.++|.+|..+|++++|+..|
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~   62 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----------------------VYTPNALYWLGESYYATRNFQLAEAQF   62 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----------------------TTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------------------cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            347888999999999999999999875410                       112368999999999999999999999


Q ss_pred             HHHHhhCCCc---hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~---~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++..+|++   +. ++++|.++..+|++++|+..|++++..
T Consensus        63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           63 RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999   77 889999999999999999999999997

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3e-12  Score=97.03  Aligned_cols=99  Identities=20%  Similarity=0.074  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      .....+|..+...|++++|+..|++++++.|..                       +....++.++|.+|..+|++++|+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~   85 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATP-----------------------QDQAVLHRNRAACHLKLEDYDKAE   85 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-----------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-----------------------hHHHHHHHHHHHHHHHHccHHHHH
Confidence            345668999999999999999999999875410                       001578999999999999999999


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..|++++.++|++.. ++++|.++..+|++++|+.+|++++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           86 TEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            999999999999998 999999999999999999999999997

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.45  E-value=1.4e-12  Score=119.22  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-H--HHcCCHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-Y--KKCGKVE   80 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y--~~~g~~~   80 (261)
                      ++++|+.+|++++..+|..+.++++||.+|...    +++++|+..|+++.   |+++  ...+.||.+ |  ...|+++
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--~a~~~Lg~~~~~~~~~~d~~  268 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--ASWVSLAQLLYDFPELGDVE  268 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST--HHHHHHHHHHHHSGGGCCHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH--HHHHHHHHHHHhCCCCCCHH
Confidence            444455555555544444444444445444333    34445555554444   3321  122234444 2  3344555


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCC
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-----NFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g-----~~~eA~~~~~~al~~~P~  155 (261)
                      +|+..|+++.+                            ++++.++++||.+|. .|     ++++|+.+|++|.   |.
T Consensus       269 ~A~~~~~~Aa~----------------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g  316 (452)
T 3e4b_A          269 QMMKYLDNGRA----------------------------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR  316 (452)
T ss_dssp             HHHHHHHHHHH----------------------------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred             HHHHHHHHHHH----------------------------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence            55555555444                            345556666666665 33     6666666666665   55


Q ss_pred             chh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      ++. .++||.+|..    ..++++|+.+|+++...
T Consensus       317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            555 5566655554    22666666666665553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.45  E-value=1.2e-12  Score=104.68  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=109.2

Q ss_pred             chhhcCCHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CCch--hHHHHHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---CSKQ--SQESLDNVLI   70 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~---~P~~--~~~~~~~~L~   70 (261)
                      +....|++++|+..|++++.      ..|....++.++|.++..+|++++|+..+++++.+   .|++  ......+.+|
T Consensus        35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  114 (203)
T 3gw4_A           35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA  114 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            35678999999999999998      55667888999999999999999999999999887   3421  1234566799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .+|...|++++|+..+++++++...              .+...      ....++.++|.++..+|++++|+.++++++
T Consensus       115 ~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          115 TVALHFGDLAGARQEYEKSLVYAQQ--------------ADDQV------AIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHH--------------TTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHh--------------ccchH------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            9999999999999999999987421              00000      023467999999999999999999999999


Q ss_pred             hhCCCch
Q 024858          151 MIDPDAN  157 (261)
Q Consensus       151 ~~~P~~~  157 (261)
                      .+.....
T Consensus       175 ~~~~~~~  181 (203)
T 3gw4_A          175 DIFAELE  181 (203)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8855443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.44  E-value=1.8e-13  Score=120.64  Aligned_cols=128  Identities=12%  Similarity=0.051  Sum_probs=79.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVD-----------------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL   65 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~-----------------~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~   65 (261)
                      .+..|++++|+..|++++...|++.                 .++.++|.++..+|++++|+..+++++.++|++.  .+
T Consensus       189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--~a  266 (338)
T 2if4_A          189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP--KA  266 (338)
T ss_dssp             TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH--HH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HH
Confidence            4568999999999999999999887                 4899999999999999999999999999999853  45


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCCHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEV  144 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~~~eA~~  144 (261)
                      ++.+|.+|...|++++|+..|++++++.                          |+++.++.+|+.+. ...+..+++..
T Consensus       267 ~~~lg~a~~~~g~~~~A~~~l~~al~l~--------------------------p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          267 LFRRGKAKAELGQMDSARDDFRKAQKYA--------------------------PDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6669999999999999999999998874                          35667888999884 56788899999


Q ss_pred             HHHHHHhhCCCchh
Q 024858          145 VYQKAQMIDPDANK  158 (261)
Q Consensus       145 ~~~~al~~~P~~~~  158 (261)
                      .|++++..+|+++.
T Consensus       321 ~~~~~l~~~p~~~~  334 (338)
T 2if4_A          321 MYKGIFKGKDEGGA  334 (338)
T ss_dssp             --------------
T ss_pred             HHHHhhCCCCCCCC
Confidence            99999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.43  E-value=2.6e-12  Score=94.94  Aligned_cols=95  Identities=16%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|.++...|++++|+..|+++++..                          |+++.++.++|.+|..+|++++|+.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~   59 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD--------------------------PTNMTYITNQAAVYFEKGDYNKCRE   59 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHhccHHHHHH
Confidence            45568999999999999999999999874                          3467789999999999999999999


Q ss_pred             HHHHHHhhCCCc-------hh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDA-------NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~-------~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|++++.+.|++       .. +.++|.++...|++++|+..|++++..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999877       66 889999999999999999999999997

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.43  E-value=6.4e-12  Score=110.59  Aligned_cols=165  Identities=17%  Similarity=0.037  Sum_probs=119.9

Q ss_pred             chhhcCCHHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch--h-HHHHHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S-QESLDNVLI   70 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~--~-~~~~~~~L~   70 (261)
                      +.+..|++++|+..|++++...        |....++.++|.++..+|++++|+..+++++...|..  . .......++
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            3567899999999999999743        4566778899999999999999999999999887741  1 123456689


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .++...|++++|+..+++++.+.+....    .        ...       .......++.++..+|++++|...+++++
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~----~--------~~~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKY----H--------SDW-------ISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCC----C--------HHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCc----c--------hhH-------HHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            9999999999999999999987421000    0        000       00111234555777888888888888887


Q ss_pred             hhCCCch----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          151 MIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~~~P~~~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ...|.+.    . +.++|.++..+|++++|...+++++..
T Consensus       243 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  282 (373)
T ss_dssp             CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7666431    1 356777888888888888888777664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.43  E-value=4.3e-12  Score=92.77  Aligned_cols=107  Identities=22%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+.+|.+++..+|....++..+|.++...|++++|+..+++++...|++.  .....++.+|...|++++|
T Consensus        19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A   96 (125)
T 1na0_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEA   96 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHH
Confidence            45689999999999999999999999999999999999999999999999999999853  3456689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  137 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g  137 (261)
                      +..+++++++.                          |+++.++.++|.++..+|
T Consensus        97 ~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           97 IEYYQKALELD--------------------------PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHhcc
Confidence            99999999874                          456778999999988765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.42  E-value=6.7e-12  Score=110.94  Aligned_cols=151  Identities=11%  Similarity=0.037  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-C-CHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-G-KVEEQI   83 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g-~~~eA~   83 (261)
                      +..++|+.++.++|..+|++..+|+.-+.++...| .++++++.++.++..+|++.  .+++.-+.++... + ++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhcCCChHHHH
Confidence            44567999999999999999999999999999999 59999999999999999842  3444456666776 7 899999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCC
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--------AAEVVYQKAQMIDPD  155 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~--------eA~~~~~~al~~~P~  155 (261)
                      +.+.++++++                          |.+..+|.+.++++...|+++        +++.++.++++.+|.
T Consensus       146 ~~~~k~L~~d--------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          146 EYIHGSLLPD--------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             HHHHHHTSSC--------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            9999998864                          456779999999999999888        999999999999999


Q ss_pred             chh-hhhHHHHHHHcCC-------HHHHHHHHHHHHhC
Q 024858          156 ANK-ACNLGLCLIKRTR-------YNEARSVLEDVLYG  185 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~-------~~eA~~~~~~~l~~  185 (261)
                      |.. |.+.+.++...|+       ++++++++++++..
T Consensus       200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~  237 (349)
T 3q7a_A          200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL  237 (349)
T ss_dssp             CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence            999 9999999999997       79999999999997

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.41  E-value=2.7e-11  Score=106.50  Aligned_cols=152  Identities=8%  Similarity=-0.010  Sum_probs=133.1

Q ss_pred             cCCHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 024858            6 QKDPE-AAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK   74 (261)
Q Consensus         6 ~~~~~-~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~----------~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~   74 (261)
                      .|+++ +|+.++.++|..+|++..+|+.-+.++...|+          +++++..++.++..+|.+.  .+++.-+.++.
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny--~aW~hR~wlL~  119 (331)
T 3dss_A           42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLS  119 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHh
Confidence            44544 69999999999999999999999999988776          6899999999999999853  23444667778


Q ss_pred             HcCC--HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 024858           75 KCGK--VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-FMAAEVVYQKAQM  151 (261)
Q Consensus        75 ~~g~--~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~-~~eA~~~~~~al~  151 (261)
                      ..|+  ++++++++.++++++                          |.+..+|.+.++++...|. +++++.++.+++.
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~d--------------------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~  173 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEAD--------------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  173 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ccCcccHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            8884  999999999999974                          3566799999999999999 6999999999999


Q ss_pred             hCCCchh-hhhHHHHHHHc--------------CCHHHHHHHHHHHHhC
Q 024858          152 IDPDANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~--------------g~~~eA~~~~~~~l~~  185 (261)
                      .+|.|.. |.+.+.++...              +.+++++.++.+++..
T Consensus       174 ~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          174 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence            9999999 99999999887              5699999999999997

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.41  E-value=1.8e-12  Score=111.29  Aligned_cols=134  Identities=19%  Similarity=0.032  Sum_probs=111.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|...|..++..+|+.. +.+.+|.++.+.||+++|+..++.+....+..........||.++...|++++|
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA  190 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEA  190 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence            4568999999999999999999999 999999999999999999999997776532211123667799999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  160 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~  160 (261)
                      +..|++++...                        .+|. .+++++++|.++.++|+.+||...|++++..+|+ .. +.
T Consensus       191 l~~l~~a~~g~------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          191 ERRLTEANDSP------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHTST------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHhcCC------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            99999998531                        0122 4578999999999999999999999999999999 65 44


Q ss_pred             hH
Q 024858          161 NL  162 (261)
Q Consensus       161 ~L  162 (261)
                      .|
T Consensus       246 aL  247 (282)
T 4f3v_A          246 AL  247 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.41  E-value=2e-11  Score=106.13  Aligned_cols=169  Identities=11%  Similarity=-0.012  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024858           12 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR   91 (261)
Q Consensus        12 A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~   91 (261)
                      |+..+++.+..++....++..+|.++...|++++|+..+.+.+..+|..-...+...++.+|.+.||.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44555555544333344445556666666666666666666555554111233444455566666666666666665555


Q ss_pred             hhcc-----hhhhcC-cch--HHHhh---chh---hhh--hhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 024858           92 LIYQ-----GEAFNG-KPT--KTARS---HGK---KFQ--VSVRQE--TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-  152 (261)
Q Consensus        92 l~~~-----~~~~~~-~~~--~~~~~---~~~---~~~--~~l~p~--~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-  152 (261)
                      ..|.     +..... ...  .....   ...   .|.  ..--|+  .+..+.|   +++++|++++|...++++++. 
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            4331     111100 000  00000   000   011  111233  2345555   899999999999999988887 


Q ss_pred             ---------CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 ---------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ---------~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                               +|+++. ..|+..+...+|+  +|.++++++...
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence                     588998 7799999999998  999999999998

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.41  E-value=1.6e-11  Score=106.99  Aligned_cols=151  Identities=4%  Similarity=-0.089  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVM----KQL---DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV   79 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~----~~~---g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~   79 (261)
                      +++++++.++.+++..+|++..+|+.-+.++    ...   ++++++++.+++++..+|.+.+  +++.-+.++...|++
T Consensus        83 ~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~--aW~~R~~vl~~l~~~  160 (306)
T 3dra_A           83 RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH--VWSYRKWLVDTFDLH  160 (306)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCT
T ss_pred             ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhccc
Confidence            4899999999999999999999999999999    777   8999999999999999998533  334456677889999


Q ss_pred             H--HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHh
Q 024858           80 E--EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN------FMAAEVVYQKAQM  151 (261)
Q Consensus        80 ~--eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~------~~eA~~~~~~al~  151 (261)
                      +  ++++.+.++++.++                          .+-.+|.+.+.++...|+      +++++.++.+++.
T Consensus       161 ~~~~EL~~~~~~i~~d~--------------------------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~  214 (306)
T 3dra_A          161 NDAKELSFVDKVIDTDL--------------------------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV  214 (306)
T ss_dssp             TCHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence            8  99999999998754                          455678888888877776      7888888888888


Q ss_pred             hCCCchh-hhhHHHHHHHcCCHHH-HHHHHHHHHhC
Q 024858          152 IDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG  185 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~g~~~e-A~~~~~~~l~~  185 (261)
                      .+|+|.+ |+.++.++.+.|+..+ ...++.+++..
T Consensus       215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  250 (306)
T 3dra_A          215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL  250 (306)
T ss_dssp             HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred             hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            8888887 8888888888887555 34466666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=5.1e-13  Score=104.94  Aligned_cols=85  Identities=12%  Similarity=0.152  Sum_probs=78.4

Q ss_pred             HcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH----------HHHHH
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF----------MAAEV  144 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~----------~eA~~  144 (261)
                      +.+++++|++.++++++++                          |+++++|.++|.++..++++          ++|+.
T Consensus        14 r~~~feeA~~~~~~Ai~l~--------------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~   67 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN--------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH
Confidence            5578999999999999874                          57889999999999999875          59999


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcC-----------CHHHHHHHHHHHHhC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRT-----------RYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g-----------~~~eA~~~~~~~l~~  185 (261)
                      .|++|++++|++.. +++||++|..+|           ++++|+.+|++++..
T Consensus        68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            99999999999999 999999999985           899999999999998

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.40  E-value=4.6e-12  Score=96.61  Aligned_cols=133  Identities=16%  Similarity=0.063  Sum_probs=106.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDL   72 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~l   72 (261)
                      ....|++++|+.+|++++...+..      ..++..+|.++..+|++++|+..+++++.+.+..    ........+|.+
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~   98 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT   98 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            456899999999999999865443      2578899999999999999999999998875531    123345678999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |...|++++|+..+++++++.+..              +..      +....++.++|.+|..+|++++|+..+++++++
T Consensus        99 ~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           99 YTLLQDYEKAIDYHLKHLAIAQEL--------------KDR------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHc--------------cch------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999999999999999874210              000      112458899999999999999999999999987


Q ss_pred             CCC
Q 024858          153 DPD  155 (261)
Q Consensus       153 ~P~  155 (261)
                      ...
T Consensus       159 ~~~  161 (164)
T 3ro3_A          159 SRE  161 (164)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=4.9e-12  Score=113.20  Aligned_cols=162  Identities=9%  Similarity=0.075  Sum_probs=131.4

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc--h--hH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRV-----------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--Q--SQ   62 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~-----------------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~--~--~~   62 (261)
                      +.+|++++|+..|.++++..|+.                 ..++..||.+|..+|++++|++.+.+++...+.  +  ..
T Consensus        15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   94 (434)
T 4b4t_Q           15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV   94 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence            45799999999999999987763                 357899999999999999999999998876553  1  12


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 024858           63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  142 (261)
Q Consensus        63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA  142 (261)
                      ..+.++++.++...|++++|+..+++++......              +.      .+....++.+||.+|..+|+|++|
T Consensus        95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------------KR------VFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------------SC------CSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------Cc------cHHHHHHHHHHHHHHHHccChHHH
Confidence            2345678888899999999999999999874210              00      112356889999999999999999


Q ss_pred             HHHHHHHHhhC------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          143 EVVYQKAQMID------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       143 ~~~~~~al~~~------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +..+++++..-      |.... +.++|.+|..+|++++|..+|++++..
T Consensus       155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999998752      22234 678999999999999999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.39  E-value=5.5e-12  Score=108.14  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ----ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~----~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      +...+..+...|++++|+..+++++...|..+.    ..+...++.+|...|++++|+..|++++++.+...        
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--------  149 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--------  149 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--------
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--------
Confidence            444577889999999999999999997775322    22344588999999999999999999999643110        


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----chh-hhhHHHHHHHcCCHHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID---PD----ANK-ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~---P~----~~~-~~~L~~~l~~~g~~~eA~~  177 (261)
                            ...      ....++.++|.+|..+|++++|+.+|+++++..   |.    ... ++++|.+|.++|++++|+.
T Consensus       150 ------~~~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~  217 (293)
T 3u3w_A          150 ------DVY------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             ------CTT------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ------cHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                  000      013478999999999999999999999999531   12    223 6799999999999999999


Q ss_pred             HHHHHHhC
Q 024858          178 VLEDVLYG  185 (261)
Q Consensus       178 ~~~~~l~~  185 (261)
                      ++++++..
T Consensus       218 ~~~~al~~  225 (293)
T 3u3w_A          218 QVNKAIEI  225 (293)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999985

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.37  E-value=4.8e-12  Score=117.06  Aligned_cols=135  Identities=7%  Similarity=-0.039  Sum_probs=107.4

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhc-----CCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGL-----CSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~-----~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      .+..+..+|++++|+..+++++..     +|+++ .....++||.+|..+|+|++|+.+++++|++..         ...
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~l  385 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM---------KLY  385 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------HHc
Confidence            345577899999999999998753     45532 234457799999999999999999999999842         011


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchh----hhhHHHHHHHcCCHHHHHH
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~----~~~L~~~l~~~g~~~eA~~  177 (261)
                      +..|         |+....++|||.+|..+|++++|+.+|++|+++     .|+++.    ..+|+.++.++|++++|..
T Consensus       386 G~~H---------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~  456 (490)
T 3n71_A          386 HHNN---------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF  456 (490)
T ss_dssp             CTTC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122         223458899999999999999999999999985     578774    4588999999999999999


Q ss_pred             HHHHHHhC
Q 024858          178 VLEDVLYG  185 (261)
Q Consensus       178 ~~~~~l~~  185 (261)
                      .|+++.+.
T Consensus       457 ~~~~~~~~  464 (490)
T 3n71_A          457 MYHKMREA  464 (490)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998774

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.36  E-value=5.5e-11  Score=104.49  Aligned_cols=149  Identities=8%  Similarity=-0.034  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC-HHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK-VEEQIEM   85 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~--~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~-~~eA~~~   85 (261)
                      +++++.++..++..+|++..+|+.-+.++...|+  ++++++.+.+++..+|.+.  .+++.-+.++...|+ ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHH
Confidence            6789999999999999999999999999999995  8999999999999999853  233445666788898 6999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHh
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------------TNFMAAEVVYQKAQM  151 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~--------------g~~~eA~~~~~~al~  151 (261)
                      +.++++.+                          |.+..+|++++.++...              +.+++++.++.+++.
T Consensus       168 ~~~~I~~~--------------------------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~  221 (331)
T 3dss_A          168 TDSLITRN--------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  221 (331)
T ss_dssp             HHHHHHHC--------------------------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------------------------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence            99999874                          45778999999999877              568999999999999


Q ss_pred             hCCCchh-hhhHHHHHHHc-----------CCHHHHHHHHHHHHhC
Q 024858          152 IDPDANK-ACNLGLCLIKR-----------TRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~-----------g~~~eA~~~~~~~l~~  185 (261)
                      ++|+|.+ |+.+..++...           +.++++++.+++++..
T Consensus       222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence            9999999 87665555555           4689999999999997

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.33  E-value=4.4e-11  Score=109.32  Aligned_cols=142  Identities=13%  Similarity=0.024  Sum_probs=121.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH-H--HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC----
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVV-M--KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG----   77 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~-~--~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g----   77 (261)
                      ..+|+++|+.+|+++.   |+++.++.+||.+ +  ...+++++|+..|+++...+..    ...+.||.+|. .|    
T Consensus       229 ~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          229 GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQP----RAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHH-HCSSSC
T ss_pred             CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHH-cCCCCC
Confidence            4579999999999998   8999999999999 5  5789999999999999977533    24556888887 66    


Q ss_pred             -CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 024858           78 -KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        78 -~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~  152 (261)
                       ++++|+..|+++. .                            +++.++++||.+|..    ..++++|+.+|+++.+ 
T Consensus       301 ~d~~~A~~~~~~Aa-~----------------------------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-  350 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV-G----------------------------REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-  350 (452)
T ss_dssp             CCHHHHHHHHHTTT-T----------------------------TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHh-C----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-
Confidence             9999999999986 2                            356799999999988    4599999999999987 


Q ss_pred             CCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          153 DPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                       +.++. .++||.+|..    ..++++|..+|+++...
T Consensus       351 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          351 -NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             -TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             -hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence             46677 8899999985    46999999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.32  E-value=1e-11  Score=110.94  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=103.6

Q ss_pred             hhhcCCHHHHHHHHHHHHH----------------cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAIN----------------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD   66 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~----------------~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~   66 (261)
                      .+..|++++|+..|+++++                .+|....++.++|.++..+|++++|+..+++++.++|+++  ...
T Consensus       233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~  310 (370)
T 1ihg_A          233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT--KAL  310 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--HHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH--HHH
Confidence            4578999999999999998                7888999999999999999999999999999999999853  456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ..+|.+|...|++++|+..|++++++.                          |+++.++..++.++..+++++++.+.
T Consensus       311 ~~lg~~~~~~g~~~eA~~~l~~Al~l~--------------------------P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          311 YRRAQGWQGLKEYDQALADLKKAQEIA--------------------------PEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            669999999999999999999999974                          45678999999999999999988764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.32  E-value=9.6e-13  Score=95.30  Aligned_cols=91  Identities=13%  Similarity=0.040  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|.++...|++++|+..|++++++.                          |+++.++.++|.+|..+|++++|+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~   59 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------PQNPVGYSNKAMALIKLGEYTQAIQ   59 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            44558889999999999999999999874                          4567889999999999999999999


Q ss_pred             HHHHHHhhCCCc------hh-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858          145 VYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       145 ~~~~al~~~P~~------~~-~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                      .|+++++++|++      .. +..+|.++..+|++++|+..+++
T Consensus        60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998      66 77889999888887777665544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.32  E-value=8.7e-12  Score=90.00  Aligned_cols=67  Identities=18%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          119 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       119 ~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|+++.+++++|.+|..+|++++|+..|+++++++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5889999999999999999999999999999999999999 999999999999999999999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.30  E-value=1.3e-11  Score=90.67  Aligned_cols=66  Identities=24%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          120 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       120 p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |+++.++.++|.+|..+|++++|+..|++++.++|++.. ++++|.++..+|++++|+..|++++..
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999999999998 999999999999999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.29  E-value=5.3e-11  Score=82.89  Aligned_cols=80  Identities=30%  Similarity=0.328  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      ....+|.+|...|++++|+..|++++++.                          |+++.++.++|.+|..+|++++|+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~   64 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PNNAEAWYNLGNAYYKQGDYDEAIE   64 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            45557888888888888888888888763                          3456788888888888888888888


Q ss_pred             HHHHHHhhCCCchh-hhhHHHHHHHcC
Q 024858          145 VYQKAQMIDPDANK-ACNLGLCLIKRT  170 (261)
Q Consensus       145 ~~~~al~~~P~~~~-~~~L~~~l~~~g  170 (261)
                      .|+++++++|++.. +.++|.++..+|
T Consensus        65 ~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           65 YYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            88888888888887 888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=1.3e-11  Score=116.29  Aligned_cols=138  Identities=8%  Similarity=-0.018  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEM   85 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g--~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g-~~~eA~~~   85 (261)
                      +++++.++.+++..+|++..+|+.-+.++...|  +++++++.++++++.+|.+.  .+++.-+.++...| +++++++.
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHcCCChHHHHHH
Confidence            899999999999999999999999999999999  66999999999999999853  34444677778889 99999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHh
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------------TNFMAAEVVYQKAQM  151 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~--------------g~~~eA~~~~~~al~  151 (261)
                      +.++++.+                          |++..+|++.|.++...              +.+++|++++.+|+.
T Consensus       167 ~~~~I~~~--------------------------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          167 TDSLITRN--------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             HHTTTTTT--------------------------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------------------------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence            99988864                          46778999999999885              668999999999999


Q ss_pred             hCCCchh-hhhHHHHHHHcCCHHH
Q 024858          152 IDPDANK-ACNLGLCLIKRTRYNE  174 (261)
Q Consensus       152 ~~P~~~~-~~~L~~~l~~~g~~~e  174 (261)
                      ++|++.. |+.++.++...|++++
T Consensus       221 ~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          221 TDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             hCCCCccHHHHHHHHHhcCCCccc
Confidence            9999999 9999999999999766

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.28  E-value=4e-11  Score=88.04  Aligned_cols=82  Identities=9%  Similarity=-0.046  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           11 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL   90 (261)
Q Consensus        11 ~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al   90 (261)
                      +|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|+..|++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999853  355669999999999999999999999


Q ss_pred             Hhhc
Q 024858           91 RLIY   94 (261)
Q Consensus        91 ~l~~   94 (261)
                      ++.|
T Consensus        81 ~~~~   84 (115)
T 2kat_A           81 AAAQ   84 (115)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9865

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.28  E-value=4.3e-11  Score=110.71  Aligned_cols=131  Identities=16%  Similarity=0.059  Sum_probs=103.6

Q ss_pred             hcCCHHHHHHHHHHHHH-----cCCCh---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----CCchhH-HHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAIN-----AGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGL-----CSKQSQ-ESLDNVLI   70 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~-----~~p~~---~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~-----~P~~~~-~~~~~~L~   70 (261)
                      .+|++++|+.+|++++.     ++|++   ..++.+||.+|..+|++++|+.++++++..     +|+++. ....+.||
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            58999999999999996     45555   566889999999999999999999998753     455332 23457799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .+|..+|++++|+.+|++++++..         ...+..|+         ...++..+|+.++..+|++++|+..|+++.
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~---------~~lG~~Hp---------~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILL---------VTHGPSHP---------ITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH---------HHTCTTSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHH---------HHhCCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999842         11111222         224467899999999999999999999987


Q ss_pred             hhC
Q 024858          151 MID  153 (261)
Q Consensus       151 ~~~  153 (261)
                      +..
T Consensus       463 ~~~  465 (490)
T 3n71_A          463 EAA  465 (490)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.25  E-value=1.1e-10  Score=101.36  Aligned_cols=145  Identities=13%  Similarity=0.135  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-ch--hhhc-----
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY-QG--EAFN-----  100 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~-~~--~~~~-----  100 (261)
                      ++..++.-+.  ++   |+..+++.+...+.+ ... ..++|.+|...|++++|+..+.+.+...+ .+  +++.     
T Consensus        73 a~~~la~~~~--~~---a~~~l~~l~~~~~~~-~~~-~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi  145 (310)
T 3mv2_B           73 VLDLYVQFLD--TK---NIEELENLLKDKQNS-PYE-LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV  145 (310)
T ss_dssp             HHHHHHHHHT--TT---CCHHHHHTTTTSCCC-HHH-HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhc--cc---HHHHHHHHHhcCCCC-cHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence            4444554442  33   889999888775442 232 35799999999999999999999977543 11  1110     


Q ss_pred             ----CcchHHHhhchhhhhhhcCCC----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCCch--h-hhhHHHH
Q 024858          101 ----GKPTKTARSHGKKFQVSVRQE----TSRLLGNL--AWAYMQKT--NFMAAEVVYQKAQMIDPDAN--K-ACNLGLC  165 (261)
Q Consensus       101 ----~~~~~~~~~~~~~~~~~l~p~----~~~~~~~L--g~~~~~~g--~~~eA~~~~~~al~~~P~~~--~-~~~L~~~  165 (261)
                          |+. ..++..-+.+ ..+.|+    ...++.+|  ||+...+|  ++.+|..+|+++....|+..  . .++   +
T Consensus       146 ~L~~~r~-d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~  220 (310)
T 3mv2_B          146 ALLNNNV-STASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L  220 (310)
T ss_dssp             HHHTTCH-HHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H
T ss_pred             HHHCCCH-HHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H
Confidence                111 1111110001 244552    23455555  55577777  99999999999999888733  3 344   8


Q ss_pred             HHHcCCHHHHHHHHHHHHhC
Q 024858          166 LIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       166 l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.+|++++|...++.++..
T Consensus       221 ~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          221 HLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999988774

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.22  E-value=2.4e-10  Score=87.59  Aligned_cols=113  Identities=17%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cCCHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVE   80 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g~~~   80 (261)
                      +++|+++|+.+|+++.+.++..+  .  ||.+|...+..++|+..|+++...+..    ...+.||.+|..    .++++
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~----~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHH
T ss_pred             CccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHcCCCCCccHH
Confidence            35677888888888887764433  3  888888878888888888888776432    244557778877    78888


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~  153 (261)
                      +|+..|+++.+.                            .++.+..+||.+|..    .+++++|+.+|++|.+..
T Consensus        79 ~A~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           79 KAAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            888888887765                            245677888888888    788888888888887763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=9e-12  Score=90.06  Aligned_cols=101  Identities=15%  Similarity=0.020  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      .+.++..+|.++...|++++|+..|++++..+|+++  .+...+|.+|...|++++|+..|++++++.|....       
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------   73 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH-------   73 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS-------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH-------
Confidence            467899999999999999999999999999999853  45566999999999999999999999998642100       


Q ss_pred             HHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858          106 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus       106 ~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                            ..       ....++.++|.++..+|++++|+..+++
T Consensus        74 ------~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           74 ------VA-------IRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             ------HH-------HHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             ------HH-------HHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence                  00       0156889999999999999888776654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.18  E-value=3e-10  Score=78.92  Aligned_cols=86  Identities=21%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      |..+.++..+|.++...|++++|+..+++++..+|+++  .....+|.+|...|++++|+..|++++++.          
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------   73 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELD----------   73 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----------
Confidence            35678899999999999999999999999999999853  355669999999999999999999999874          


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  137 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g  137 (261)
                                      |+++.++.++|.++..+|
T Consensus        74 ----------------p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           74 ----------------PNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHHC
T ss_pred             ----------------CCCHHHHHHHHHHHHhcC
Confidence                            456789999999998765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.16  E-value=7e-10  Score=98.00  Aligned_cols=137  Identities=12%  Similarity=0.014  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH-----
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-D-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE-----   80 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~-g-~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~-----   80 (261)
                      ++++++.++.+++..+|++..+|+.-+.++... + +++++++.+++++..+|.+.  .+++.-+.++.+.|+++     
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy--~AW~~R~wvl~~l~~~~~~~~~  181 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY--HTWAYLHWLYSHFSTLGRISEA  181 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH--HHHHHHHHHHHHHHHTTCCCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccccccchh
Confidence            699999999999999999999999999999988 8 99999999999999999853  23333555666777777     


Q ss_pred             ---HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHH
Q 024858           81 ---EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-------FMAAEVVYQKAQ  150 (261)
Q Consensus        81 ---eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~-------~~eA~~~~~~al  150 (261)
                         ++++.+.++++.+                          |.+..+|++.+.++...++       +++++.++.+++
T Consensus       182 ~~~eELe~~~k~I~~d--------------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI  235 (349)
T 3q7a_A          182 QWGSELDWCNEMLRVD--------------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI  235 (349)
T ss_dssp             HHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence               8999999988874                          4567899999999999987       799999999999


Q ss_pred             hhCCCchh-hhhHHHHHHHcCCH
Q 024858          151 MIDPDANK-ACNLGLCLIKRTRY  172 (261)
Q Consensus       151 ~~~P~~~~-~~~L~~~l~~~g~~  172 (261)
                      .++|+|.. |+.+..++...|+-
T Consensus       236 ~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          236 HLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HhCCCCHHHHHHHHHHHHhcCCC
Confidence            99999999 99999999888874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.14  E-value=9.4e-10  Score=110.87  Aligned_cols=155  Identities=13%  Similarity=0.089  Sum_probs=112.8

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      |++++|.+++.++     +.+.+|..+|..+...|+++|||..|.++  -+|+     .+...+..+.+.|++++|++.|
T Consensus      1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~s-----ay~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS-----SYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChH-----HHHHHHHHHHHcCCHHHHHHHH
Confidence            4455555555433     55889999999999999999999999875  2232     2334788999999999999999


Q ss_pred             HHHHHhhcch-----hhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhh
Q 024858           87 KRKLRLIYQG-----EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN  161 (261)
Q Consensus        87 ~~al~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~  161 (261)
                      ..+.+..+..     .++.  ..+.  .....+..-++..+...+.++|..+...|+|++|..+|.+|       ..|..
T Consensus      1158 ~mArk~~~e~~Idt~Lafa--YAKl--~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~r 1226 (1630)
T 1xi4_A         1158 QMARKKARESYVETELIFA--LAKT--NRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGR 1226 (1630)
T ss_pred             HHHHhhcccccccHHHHHH--HHhh--cCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHH
Confidence            9998875321     1111  0000  00011111123334456678999999999999999999996       24899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q 024858          162 LGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      +|.+|.++|++++|++.++++..
T Consensus      1227 LA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1227 LASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHHHhCCHHHHHHHHHHhCC
Confidence            99999999999999999999855

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.12  E-value=1.1e-09  Score=83.84  Aligned_cols=109  Identities=16%  Similarity=0.041  Sum_probs=96.8

Q ss_pred             CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCC
Q 024858           41 DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ  120 (261)
Q Consensus        41 g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p  120 (261)
                      +++++|+..|+++...++..+    .  ||.+|...+.+++|+..|+++.+.                            
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------   54 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFG----C--LSLVSNSQINKQKLFQYLSKACEL----------------------------   54 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred             cCHHHHHHHHHHHHcCCCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence            468899999999998875532    2  888999999999999999999886                            


Q ss_pred             CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          121 ETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      +++.+.++||.+|..    .+++++|+.+|++|.+.  .++. .++||.+|..    .+++++|+.+|+++...
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            256799999999999    99999999999999987  6677 8999999999    89999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.09  E-value=5.2e-10  Score=80.49  Aligned_cols=71  Identities=10%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858           22 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~   94 (261)
                      .+|+++.++..+|.++..+|++++|+..++++++++|+++  ..+..+|.+|...|++++|+..|++++++.+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            4799999999999999999999999999999999999854  3566699999999999999999999999854

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.09  E-value=3.1e-09  Score=107.13  Aligned_cols=170  Identities=16%  Similarity=0.078  Sum_probs=114.9

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +++..|++++|+..|.+|     ++++++..+|..+.+.|++++|++.|..+++..|+..   +...+|.+|.+.+++++
T Consensus      1114 Aql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~---Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A         1114 AQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALAKTNRLAE 1185 (1630)
T ss_pred             HHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---ccHHHHHHHHhhcCHHH
Confidence            467889999999999886     7788999999999999999999999999998776521   12236777778888875


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-------  154 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P-------  154 (261)
                       ++.|.+...    ...+.. ........+....-..--..+..|..+|.+|..+|++++|++++++|....+       
T Consensus      1186 -le~fI~~~n----~ad~~~-iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~a 1259 (1630)
T 1xi4_A         1186 -LEEFINGPN----NAHIQQ-VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 1259 (1630)
T ss_pred             -HHHHHhCCC----HHHHHH-HHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence             433322111    011100 0000111111000000001235778889999999999999999988855544       


Q ss_pred             ------------------Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          155 ------------------DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ------------------~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                                        .+++ ...++..|...|.+++|+.++++++..
T Consensus      1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                              1333 446788999999999999999999987

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.08  E-value=4.9e-10  Score=100.10  Aligned_cols=162  Identities=9%  Similarity=0.014  Sum_probs=127.3

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLY   73 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~------~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly   73 (261)
                      ...|++++|..+|.+++...+..      ..+...+|.++...|++++|+..++.++...+.    .-...+...||.+|
T Consensus        66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  145 (434)
T 4b4t_Q           66 VTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH  145 (434)
T ss_dssp             HHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            46799999999999998754432      234556899999999999999999998765442    11334566799999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ..+|++++|+..+++++......              .      -+|...+++.++|.+|..+|++++|...|++++.+.
T Consensus       146 ~~~g~~~~A~~~l~~~~~~~~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          146 YQKKQYKDSLALINDLLREFKKL--------------D------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTS--------------S------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHHHHhc--------------c------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            99999999999999998863210              0      012345789999999999999999999999999875


Q ss_pred             CC---ch----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PD---AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~---~~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |.   ..    . +..+|.++...|++++|...|.+++..
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            42   21    2 457899999999999999999999874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.07  E-value=4.3e-10  Score=79.95  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~-~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      .|..+...|++++|+..|++++++.                          |+++. ++.++|.+|..+|++++|+..|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~   59 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE--------------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQ   59 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--------------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6777889999999999999999874                          45677 99999999999999999999999


Q ss_pred             HHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          148 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       148 ~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++++|++.. +.+        +.+.+++..|++++..
T Consensus        60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYN   90 (99)
T ss_dssp             HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred             HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence            99999999987 543        6677888888877665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.05  E-value=5.8e-10  Score=101.57  Aligned_cols=103  Identities=11%  Similarity=-0.039  Sum_probs=80.9

Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-  152 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-  152 (261)
                      ...|+|++|+..|+++|++...         .....|         |+...+++|||.+|..+|+|++|+.+|+++|++ 
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~---------~lg~~H---------p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~  370 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSS---------VFEDSN---------VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY  370 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTT---------TBCTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhC---------ccChhc---------hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            3568999999999999998420         011111         123457899999999999999999999999975 


Q ss_pred             ----CCCch---h-hhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCcchh
Q 024858          153 ----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGR  194 (261)
Q Consensus       153 ----~P~~~---~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~--~~~~~~~~  194 (261)
                          .|+++   . ++|||.+|..+|++++|+.+|++++...  ..+++|+.
T Consensus       371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence                46666   3 6799999999999999999999999962  24666765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.03  E-value=3.7e-10  Score=80.30  Aligned_cols=92  Identities=13%  Similarity=0.143  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhc
Q 024858           31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH  110 (261)
Q Consensus        31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~  110 (261)
                      ...|.++...|++++|+..+++++..+|+++. .....+|.+|...|++++|+..|++++++.|                
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------------   66 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-EAYYLMGNAYRKLGDWQKALNNYQSAIELNP----------------   66 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------
Confidence            45677888888888888888888888887432 1455578888888888888888888887643                


Q ss_pred             hhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858          111 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       111 ~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                                +++.++.+        +.+.+++..|++++..+|++.
T Consensus        67 ----------~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           67 ----------DSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             ----------TSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             ----------CcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence                      33444433        567778888888887777664

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.02  E-value=5.9e-11  Score=107.67  Aligned_cols=155  Identities=12%  Similarity=0.042  Sum_probs=37.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      -|++++|..++++.     +.+.+|..||..+.+.|++++||+.|.++  .+|.     .....+..+...|++++|+.+
T Consensus        16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~-----~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS-----SYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHH-----HHHHHHHHHHhCCCHHHHHHH
Confidence            36789999999987     34569999999999999999999999764  2222     233456677889999999999


Q ss_pred             HHHHHHhhcchhhhc---CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           86 LKRKLRLIYQGEAFN---GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        86 ~~~al~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      ++.+.+..++.....   .-..+.. .......+.-.|+ ..+|.++|..+...|+|++|..+|.++        . +..
T Consensus        84 l~~ark~~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~  153 (449)
T 1b89_A           84 LQMARKKARESYVETELIFALAKTN-RLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR  153 (449)
T ss_dssp             --------------------------CHHHHTTTTTCC-----------------CTTTHHHHHHHT--------TCHHH
T ss_pred             HHHHHHhCccchhHHHHHHHHHHhC-CHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence            999887522111110   0000100 0001111112243 459999999999999999999999977        5 889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 024858          162 LGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       162 L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      ||.++.++|++++|++.|+++
T Consensus       154 LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          154 LASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHc
Confidence            999999999999999999998

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.98  E-value=2.7e-09  Score=97.20  Aligned_cols=103  Identities=14%  Similarity=0.060  Sum_probs=79.4

Q ss_pred             HHcCCcHHHHHHHHHHHh-----cCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhch
Q 024858           38 KQLDRSEEAIEAIKSFRG-----LCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  111 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~-----~~P~~~~-~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~  111 (261)
                      ...|++++|+..+++++.     ++|+++. ....++||.+|..+|+|++|+.+|+++|++..         ...+..| 
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~lG~~H-  378 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS---------KHYPVYS-  378 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHSCSSC-
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH---------HHcCCCC-
Confidence            356899999999999876     4565432 23457799999999999999999999999842         0111112 


Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchh
Q 024858          112 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK  158 (261)
Q Consensus       112 ~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~  158 (261)
                              |+....++|||.+|..+|++++|+.+|++|+++     .|+++.
T Consensus       379 --------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          379 --------LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             --------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence                    223457899999999999999999999999986     477765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.94  E-value=1.3e-08  Score=72.65  Aligned_cols=70  Identities=14%  Similarity=0.066  Sum_probs=64.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 024858          119 RQETSRLLGNLAWAYMQKTN---FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP  188 (261)
Q Consensus       119 ~p~~~~~~~~Lg~~~~~~g~---~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~  188 (261)
                      .|++++++..+|.++...++   .++|...+++|++++|+++. .+.||..+.+.|+|++|+.++++++...+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            47889999999999976666   79999999999999999999 999999999999999999999999998443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.94  E-value=7.5e-09  Score=91.67  Aligned_cols=122  Identities=17%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---C-CcHHHHH----HHHHH--HhcCCchhHHHHHHHHHHHHHHcC
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---D-RSEEAIE----AIKSF--RGLCSKQSQESLDNVLIDLYKKCG   77 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~---g-~~~eAi~----~~~~~--~~~~P~~~~~~~~~~L~~ly~~~g   77 (261)
                      +..+|+.+|++|++.+|+++.++..++.++...   + .....+.    .++.+  +..+|.++  .....++..+...|
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a--~~~~alal~~l~~g  291 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS--IIYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH--HHHHHHHHHHHhCC
Confidence            346788888888888888887777777766421   1 0111111    11111  12334322  22333444444556


Q ss_pred             CHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           78 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        78 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      ++++|+..+++++.++|                           +..++..+|.++.-.|++++|++.|.+|+.++|...
T Consensus       292 d~d~A~~~l~rAl~Ln~---------------------------s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEM---------------------------SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            66666666666666532                           123445566666666666666666666666666554


Q ss_pred             h
Q 024858          158 K  158 (261)
Q Consensus       158 ~  158 (261)
                      .
T Consensus       345 t  345 (372)
T 3ly7_A          345 T  345 (372)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.91  E-value=4.5e-09  Score=95.60  Aligned_cols=116  Identities=13%  Similarity=-0.029  Sum_probs=86.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      -+..+|++++|+..|+++|++...         .....|         |....++.|||.+|..+|+|++|+.+|++++.
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~---------~lg~~h---------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSE---------RLPDIN---------IYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSC---------CCCTTS---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccC---------cCCccc---------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            346789999999999999987320         001111         12345889999999999999999999999997


Q ss_pred             h-----CCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCcchhhHHHHHHHHHHH
Q 024858          152 I-----DPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGRTRKRAEELLLEL  206 (261)
Q Consensus       152 ~-----~P~~~~----~~~L~~~l~~~g~~~eA~~~~~~~l~~~--~~~~~~~~~~~~a~~~l~~l  206 (261)
                      +     .|+++.    ++|||.+|..+|++++|+.+|++++...  ..+++|+... .....|..+
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~-~~~~~l~~~  422 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE-DLILLLEEC  422 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH-HHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHH
Confidence            5     466663    5799999999999999999999999852  2366665422 244444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.89  E-value=1.4e-08  Score=92.33  Aligned_cols=117  Identities=14%  Similarity=0.006  Sum_probs=87.6

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhc-----CCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858           35 VVMKQLDRSEEAIEAIKSFRGL-----CSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  108 (261)
Q Consensus        35 ~~~~~~g~~~eAi~~~~~~~~~-----~P~~~-~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~  108 (261)
                      .-+..+|++++|+..+++++..     .|+++ .....+.|+.+|..+|+|++|+.+++++|++..         ...+.
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~---------~~lg~  365 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR---------IFFPG  365 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------HHSCS
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH---------HHcCC
Confidence            3456789999999999999864     44432 223457799999999999999999999999842         00011


Q ss_pred             hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchh----hhhHHHHHHHc
Q 024858          109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKR  169 (261)
Q Consensus       109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~----~~~L~~~l~~~  169 (261)
                      .|         |+....++|||.+|..+|++++|+.+|++|+++     .|+++.    ..+|+.+..++
T Consensus       366 ~H---------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          366 SH---------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             SC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            11         223457899999999999999999999999985     577774    35677776543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.86  E-value=8e-08  Score=85.08  Aligned_cols=145  Identities=10%  Similarity=-0.078  Sum_probs=99.9

Q ss_pred             HHHcCCChHHHHHH--HHHHHHHcC---CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----HcCCHHHHHHHHHHH
Q 024858           19 AINAGDRVDSALKD--MAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK----KCGKVEEQIEMLKRK   89 (261)
Q Consensus        19 al~~~p~~~~al~~--Lg~~~~~~g---~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~----~~g~~~eA~~~~~~a   89 (261)
                      +....|.+++|+..  -|.-+...+   .+.+|+.+|+++++++|+++.....  ++.+|.    ..+.....+..++++
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~--la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE--KALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHhccCCCchhhHHHHHHH
Confidence            34445666555443  344444433   4588999999999999996433332  333332    111112222222222


Q ss_pred             HHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHc
Q 024858           90 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR  169 (261)
Q Consensus        90 l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~  169 (261)
                      ++.                    ...+...|.++.++..+|.++...|++++|+..+++|+.++|+...+..+|.++...
T Consensus       264 ~~a--------------------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~  323 (372)
T 3ly7_A          264 IDN--------------------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMK  323 (372)
T ss_dssp             HHH--------------------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred             HHH--------------------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence            221                    111345678899999999999999999999999999999998643478899999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 024858          170 TRYNEARSVLEDVLYG  185 (261)
Q Consensus       170 g~~~eA~~~~~~~l~~  185 (261)
                      |++++|++.|++++..
T Consensus       324 G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          324 GMNREAADAYLTAFNL  339 (372)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999999998

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.82  E-value=5.9e-09  Score=94.59  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=88.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .|++++|+..|+++     +++.+|..+..++...|+++.|..+... +..+|++    +. .++.+|.+.|++++|+.+
T Consensus       161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~----l~-~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          161 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE----LE-ELINYYQDRGYFEELITM  229 (449)
T ss_dssp             TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----HH-HHHHHHHHTTCHHHHHHH
T ss_pred             hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----HH-HHHHHHHHCCCHHHHHHH
Confidence            34555555555555     2344555555555555555555444433 2244442    11 255677888888888888


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCC-----Cchh
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY--MQKTNFMAAEVVYQKAQMIDP-----DANK  158 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~--~~~g~~~eA~~~~~~al~~~P-----~~~~  158 (261)
                      ++++|.+.                          +.+..++..||.+|  ...++..|+++.|...+.+.|     .+..
T Consensus       230 Le~aL~le--------------------------~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~  283 (449)
T 1b89_A          230 LEAALGLE--------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH  283 (449)
T ss_dssp             HHHHTTST--------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred             HHHHhCCc--------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            88877763                          22344666677777  446778888888888888877     7777


Q ss_pred             -hhhHHHHHHHcCCHHHHHHHHHH
Q 024858          159 -ACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       159 -~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                       |..+..+|.+.|+++.|+..+-+
T Consensus       284 ~w~e~~~ly~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          284 LWAELVFLYDKYEEYDNAIITMMN  307 (449)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHh
Confidence             88888888888888888776544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.66  E-value=1.4e-07  Score=67.34  Aligned_cols=71  Identities=13%  Similarity=0.017  Sum_probs=62.9

Q ss_pred             CCChHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 024858           23 GDRVDSALKDMAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ   95 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~---~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~   95 (261)
                      +|++++.+..+|.++...+.   .++|..+++++++++|++  ......+|.++.+.|+|++|+..|+++++..|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999976655   799999999999999995  345667999999999999999999999998764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.66  E-value=5.3e-07  Score=86.43  Aligned_cols=173  Identities=13%  Similarity=0.015  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           10 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR   88 (261)
Q Consensus        10 ~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi-~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~   88 (261)
                      +.....|++++...|.+++.|...+..+...|+.++|+ ..|++++..+|.+  ..++..++.+....|++++|..+|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s--~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS--AVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34667899999999999999999999999999999998 9999999999984  34566688899999999999999999


Q ss_pred             HHHhhc----------ch-----------h--hhcCcchHHHhhch------hhhhhhc---CCCcHHHHHHHHHHHHHc
Q 024858           89 KLRLIY----------QG-----------E--AFNGKPTKTARSHG------KKFQVSV---RQETSRLLGNLAWAYMQK  136 (261)
Q Consensus        89 al~l~~----------~~-----------~--~~~~~~~~~~~~~~------~~~~~~l---~p~~~~~~~~Lg~~~~~~  136 (261)
                      ++...+          |.           .  .+. ...+..+..+      ..+...+   .+....++...+.+-...
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi-~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC-VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence            998531          10           0  000 0001111111      1122111   122345666666655555


Q ss_pred             C-CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          137 T-NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       137 g-~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      | +++.|...|+++++..|+++. |...+......|+.+.|..+|++++..
T Consensus       483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            4 488888888888888888888 777788888888888888888888886

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.65  E-value=1.1e-06  Score=75.10  Aligned_cols=102  Identities=15%  Similarity=0.058  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Q 024858           79 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE--TSRLLGNLAWAYMQK-----TNFMAAEVVYQKAQM  151 (261)
Q Consensus        79 ~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~--~~~~~~~Lg~~~~~~-----g~~~eA~~~~~~al~  151 (261)
                      ..+|...++++++++|                          +  +..+|..||.+|...     |+.++|..+|++|++
T Consensus       179 l~~A~a~lerAleLDP--------------------------~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~  232 (301)
T 3u64_A          179 VHAAVMMLERACDLWP--------------------------SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR  232 (301)
T ss_dssp             HHHHHHHHHHHHHHCT--------------------------THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC--------------------------CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence            5677888888888754                          3  345899999999995     999999999999999


Q ss_pred             hCCCc-hh-hhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCC-Ccc----hhhHHHHHHHHHHH
Q 024858          152 IDPDA-NK-ACNLGLCLIK-RTRYNEARSVLEDVLYGRIPG-CED----GRTRKRAEELLLEL  206 (261)
Q Consensus       152 ~~P~~-~~-~~~L~~~l~~-~g~~~eA~~~~~~~l~~~~~~-~~~----~~~~~~a~~~l~~l  206 (261)
                      ++|+. .. .+..|..|.. +|++++|.+++++++..++.. |+.    ....+++..+|..+
T Consensus       233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~  295 (301)
T 3u64_A          233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHV  295 (301)
T ss_dssp             HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTH
T ss_pred             hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence            99975 77 8899999988 499999999999999984322 332    23334555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.63  E-value=3.5e-07  Score=66.21  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ...+|..+.+.|+|..|+.-|+++++..++...                   ..+..++++.+||.+|.++|++++|+.+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~   68 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLL   68 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------CcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence            345889999999999999999999987421110                   0123567999999999999999999999


Q ss_pred             HHHHHhhCCCchh-hhhHH
Q 024858          146 YQKAQMIDPDANK-ACNLG  163 (261)
Q Consensus       146 ~~~al~~~P~~~~-~~~L~  163 (261)
                      ++++++++|++.. ..|++
T Consensus        69 ~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           69 TKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHhhHH
Confidence            9999999999998 77776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.58  E-value=9.9e-07  Score=84.55  Aligned_cols=179  Identities=10%  Similarity=-0.009  Sum_probs=137.5

Q ss_pred             hhcCCHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----------Cch---------hH
Q 024858            4 LVQKDPEAAI-VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----------SKQ---------SQ   62 (261)
Q Consensus         4 ~~~~~~~~A~-~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~-----------P~~---------~~   62 (261)
                      ...|+.++|. ..|.+|+...|.....+...+.+....|++++|.++|++++...           |.+         ..
T Consensus       354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~  433 (679)
T 4e6h_A          354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL  433 (679)
T ss_dssp             HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence            3457778886 99999999999998888999999999999999999999998753           420         01


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcch--hhhc---------CcchHHHhhchhhhh--hhcCCCcHHHHHHH
Q 024858           63 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--EAFN---------GKPTKTARSHGKKFQ--VSVRQETSRLLGNL  129 (261)
Q Consensus        63 ~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~--~~~~---------~~~~~~~~~~~~~~~--~~l~p~~~~~~~~L  129 (261)
                      ..++...+.+..+.|..+.|..+|.++++..+..  ..+.         +...+.+   .+.+.  +..-|+++..+...
T Consensus       434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A---r~ife~~Lk~~p~~~~~w~~y  510 (679)
T 4e6h_A          434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA---CKVLELGLKYFATDGEYINKY  510 (679)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHCCCchHHHHHH
Confidence            2245556778788999999999999999862211  1111         1100111   01122  34458889999899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC---chh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          130 AWAYMQKTNFMAAEVVYQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       130 g~~~~~~g~~~eA~~~~~~al~~~P~---~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +......|+.+.|...|++|+...|+   ... |......-.+.|..+.+..++++++..
T Consensus       511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99899999999999999999999884   345 777888888999999999999999997

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.53  E-value=1e-05  Score=74.83  Aligned_cols=152  Identities=13%  Similarity=0.015  Sum_probs=117.0

Q ss_pred             hcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHhc--CCchhHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVMKQLDR---------SEEAIEAIKSFRGL--CSKQSQESLDNVLID   71 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~--~~p~~~~al~~Lg~~~~~~g~---------~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~   71 (261)
                      ..|++++|..+|.....  ..|+.. ++..|-.++...++         .++|.++++++...  .|+   ...++.|..
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~tyn~lI~  113 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EATFTNGAR  113 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHH
Confidence            47899999999998876  445533 45555555554443         67889999887764  455   335677888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024858           72 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  151 (261)
Q Consensus        72 ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~  151 (261)
                      .|.+.|++++|.+++++..+..                        +.| +..+++.|-..|.+.|+.++|..+|++..+
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999999999999876541                        112 235778888899999999999999999887


Q ss_pred             h--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          152 I--DPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 ~--~P~~~~~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .  .|+...+..|-.+|.+.|+.++|.+++++....
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            4  566666888999999999999999999998775

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.52  E-value=6.3e-07  Score=76.67  Aligned_cols=110  Identities=16%  Similarity=0.087  Sum_probs=87.6

Q ss_pred             cCCChHHHHHHHHHHHHH---c--C------CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 024858           22 AGDRVDSALKDMAVVMKQ---L--D------RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-----GKVEEQIEM   85 (261)
Q Consensus        22 ~~p~~~~al~~Lg~~~~~---~--g------~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-----g~~~eA~~~   85 (261)
                      .+|++++++.-.|.+...   .  |      ...+|...++++++++|+..+...+..||.+|.+.     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            455567776666666532   2  2      35678889999999999843445778899999995     999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDA  156 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~-~g~~~eA~~~~~~al~~~P~~  156 (261)
                      |+++|+++|.+                         +.++++..|..+.. +|++++|.+++++|+..+|..
T Consensus       227 ferAL~LnP~~-------------------------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAH-------------------------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTT-------------------------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCC-------------------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999986511                         25688899999977 599999999999999999986

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=1.1e-06  Score=68.25  Aligned_cols=80  Identities=13%  Similarity=0.158  Sum_probs=67.2

Q ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-Cchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcch
Q 024858          120 QETSRLLGNLAWAYMQKT---NFMAAEVVYQKAQMID-P-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG  193 (261)
Q Consensus       120 p~~~~~~~~Lg~~~~~~g---~~~eA~~~~~~al~~~-P-~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~  193 (261)
                      |.+.++.+++||++.+.+   +.++++..++++++.+ | ++.+ +++||..+.++|+|++|.+++++++..   +|.+.
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i---eP~n~  105 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNN  105 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCH
Confidence            456789999999999998   6679999999999999 7 4456 899999999999999999999999998   56554


Q ss_pred             hhHHHHHHHHHHH
Q 024858          194 RTRKRAEELLLEL  206 (261)
Q Consensus       194 ~~~~~a~~~l~~l  206 (261)
                      +    |.++...+
T Consensus       106 Q----A~~Lk~~i  114 (152)
T 1pc2_A          106 Q----AKELERLI  114 (152)
T ss_dssp             H----HHHHHHHH
T ss_pred             H----HHHHHHHH
Confidence            3    55554444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.35  E-value=4.4e-06  Score=60.29  Aligned_cols=63  Identities=11%  Similarity=0.013  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          123 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.-.+.||..+..+|+|..|+..|++|+...       +.... +.+||.++.++|++++|+.++++++..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3456899999999999999999999999974       23445 779999999999999999999999997

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.30  E-value=6.8e-06  Score=63.71  Aligned_cols=87  Identities=13%  Similarity=0.008  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g---~~~eAi~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .....+...|...+..+|...++.+++|.++.+.+   +.+++|..++.+++.+ |.+ +....+.||..|.+.|+|++|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCHHHH
Confidence            44667888999999999999999999999999988   7779999999999998 742 344556699999999999999


Q ss_pred             HHHHHHHHHhhc
Q 024858           83 IEMLKRKLRLIY   94 (261)
Q Consensus        83 ~~~~~~al~l~~   94 (261)
                      ..+++++|++.|
T Consensus        91 ~~y~~~lL~ieP  102 (152)
T 1pc2_A           91 LKYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHhcCC
Confidence            999999999865

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.12  E-value=0.00024  Score=65.66  Aligned_cols=153  Identities=14%  Similarity=0.073  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhcchh
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGK---------VEEQIEMLKRKLRLIYQGE   97 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~--~P~~~~~~~~~~L~~ly~~~g~---------~~eA~~~~~~al~l~~~~~   97 (261)
                      .+..+=..+.+.|+.++|.++++++...  .|+   ...++.|..+|...|+         .++|.++|++.....    
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G----  100 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK----  100 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC----
Confidence            3455556778999999999999998764  455   2345667777766554         688888888876531    


Q ss_pred             hhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchhhhhHHHHHHHcCCHHHH
Q 024858           98 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANKACNLGLCLIKRTRYNEA  175 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~L~~~l~~~g~~~eA  175 (261)
                                          +.| +..+++.|-.+|.+.|++++|..+|++..+.  .|+...+..|-..|.+.|+.++|
T Consensus       101 --------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A          101 --------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             --------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             --------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence                                112 2457888999999999999999999998864  57666688888999999999999


Q ss_pred             HHHHHHHHhCC-CCCC----------cchhhHHHHHHHHHHHHhc
Q 024858          176 RSVLEDVLYGR-IPGC----------EDGRTRKRAEELLLELESK  209 (261)
Q Consensus       176 ~~~~~~~l~~~-~~~~----------~~~~~~~~a~~~l~~l~~~  209 (261)
                      .+++++..... .|+.          ...+..++|.+++..+...
T Consensus       160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            99999998863 1221          1346677888888887643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.05  E-value=0.0002  Score=65.94  Aligned_cols=163  Identities=9%  Similarity=-0.031  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR   88 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~   88 (261)
                      .+.....|++++...|..+..|...+..+.+.|+.++|...|++++.. |.+..  +....+.. .+.+   +.   +++
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~--l~~~y~~~-~e~~---~~---~~~  264 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF--LSLYYGLV-MDEE---AV---YGD  264 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH--HHHHHHHH-TTCT---HH---HHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH--HHHHHHhh-cchh---HH---HHH
Confidence            345678999999999999999999999999999999999999999999 98432  22212211 1111   11   111


Q ss_pred             HHHhh---c--------ch---hhhcCcchHHHhhch------hhhhhhcCC-CcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 024858           89 KLRLI---Y--------QG---EAFNGKPTKTARSHG------KKFQVSVRQ-ETSRLLGNLAWAYMQKT-NFMAAEVVY  146 (261)
Q Consensus        89 al~l~---~--------~~---~~~~~~~~~~~~~~~------~~~~~~l~p-~~~~~~~~Lg~~~~~~g-~~~eA~~~~  146 (261)
                      +....   .        ..   ..+... .+..+.++      ..+.....| ....++...+.+-...+ +++.|...|
T Consensus       265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y-~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          265 LKRKYSMGEAESAEKVFSKELDLLRINH-LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             HHHHTC----------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHhhccchhhhhcccccHHHHHHH-HHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence            11100   0        00   000000 00000000      011111112 13445555555555445 699999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      +++++..|+++. +...+......|+.+.|..+|+++
T Consensus       344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999888 777788888999999999888886

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.56  E-value=0.0006  Score=53.28  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                      .-+...|.|+.|+-....++.+...+..... +.                ....++..+|.++..+|+|..|+..|++||
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-p~----------------~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-PP----------------QKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-HH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCccccc-HH----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            4457889999999999998887321110000 00                013478999999999999999999999997


Q ss_pred             hhC------C-------------------Cchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          151 MID------P-------------------DANK-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       151 ~~~------P-------------------~~~~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      ...      |                   ...+ .+.++.||.+.|++++|+.+++.+
T Consensus        91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            642      1                   1114 578999999999999999998763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.55  E-value=0.00035  Score=52.23  Aligned_cols=79  Identities=13%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             CcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchh
Q 024858          121 ETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMID-PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGR  194 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~~g~~~e---A~~~~~~al~~~-P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~  194 (261)
                      ...++.+++||++....+..+   ++..++..+..+ |... + .+.||..+.+.|+|++|..+++.+|..   .|.+.+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~---eP~n~Q  109 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNNQ  109 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHH
Confidence            356789999999999998888   999999999987 6444 4 789999999999999999999999998   555543


Q ss_pred             hHHHHHHHHHHH
Q 024858          195 TRKRAEELLLEL  206 (261)
Q Consensus       195 ~~~~a~~~l~~l  206 (261)
                          |..+...+
T Consensus       110 ----A~~Lk~~i  117 (126)
T 1nzn_A          110 ----AKELERLI  117 (126)
T ss_dssp             ----HHHHHHHH
T ss_pred             ----HHHHHHHH
Confidence                55555444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.44  E-value=0.0028  Score=47.23  Aligned_cols=86  Identities=13%  Similarity=0.022  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhcC-CchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            8 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEE---AIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         8 ~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~e---Ai~~~~~~~~~~-P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ....+...|..++..++...++.+++|..+.......+   +|.+++..++.+ |.. .....+.||..+.+.|+|++|.
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhHHHHH
Confidence            45567788888888888889999999999988887777   999999999887 632 3445566899999999999999


Q ss_pred             HHHHHHHHhhc
Q 024858           84 EMLKRKLRLIY   94 (261)
Q Consensus        84 ~~~~~al~l~~   94 (261)
                      .+.+..|++.|
T Consensus        95 ~~~~~lL~~eP  105 (126)
T 1nzn_A           95 KYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHHhCC
Confidence            99999999855

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.36  E-value=0.0075  Score=46.32  Aligned_cols=115  Identities=10%  Similarity=0.043  Sum_probs=78.4

Q ss_pred             HHHHHHcCCH------HHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           70 IDLYKKCGKV------EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        70 ~~ly~~~g~~------~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      ..+..+.|+.      ++-.+.|++++...||.. ..         +-+.        ...+|...+.. ...++.++|.
T Consensus        20 l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~---------~wrr--------YI~LWIrYA~~-~ei~D~d~aR   80 (161)
T 4h7y_A           20 LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YG---------QNES--------FARIQVRFAEL-KAIQEPDDAR   80 (161)
T ss_dssp             HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GT---------TCHH--------HHHHHHHHHHH-HHHHCGGGCH
T ss_pred             HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cc---------cHHH--------HHHHHHHHHHH-HHhcCHHHHH
Confidence            3444556777      777888888888877753 10         0011        12356666644 5668999999


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhc
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESK  209 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l~~~  209 (261)
                      ..|+.++.+....+. |...|..-.++|+...|..++.+++..   .+-..   +..+..++.+...
T Consensus        81 ~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~---~~k~~---~~le~a~~nl~~~  141 (161)
T 4h7y_A           81 DYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER---GAVPL---EMLEIALRNLNLQ  141 (161)
T ss_dssp             HHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCBCH---HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CCCcH---HHHHHHHHhhhcC
Confidence            999999888777766 888899999999999999999999986   32222   2355556665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.31  E-value=0.0033  Score=47.76  Aligned_cols=78  Identities=13%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhH
Q 024858          122 TSRLLGNLAWAYMQKTNFM---AAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR  196 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~~g~~~---eA~~~~~~al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~  196 (261)
                      .+++.+++||++....+.+   +++..++..+..+|+.. + .+.||..+.++|+|++|.++.+.+|..   .|.+.+  
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n~Q--  112 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ--  112 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCCHH--
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcHH--
Confidence            5779999999998887665   79999999999999766 4 889999999999999999999999998   555543  


Q ss_pred             HHHHHHHHHH
Q 024858          197 KRAEELLLEL  206 (261)
Q Consensus       197 ~~a~~~l~~l  206 (261)
                        |..+...+
T Consensus       113 --A~~Lk~~I  120 (144)
T 1y8m_A          113 --VGALKSMV  120 (144)
T ss_dssp             --HHHHHHHH
T ss_pred             --HHHHHHHH
Confidence              55554444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.30  E-value=0.003  Score=47.44  Aligned_cols=78  Identities=13%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhH
Q 024858          122 TSRLLGNLAWAYMQKTNF---MAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR  196 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~~g~~---~eA~~~~~~al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~  196 (261)
                      .+.+.+++||++......   .+++..++..+..+|... + ++.||..+.+.|+|++|.++.+.+|..   .|.+.+  
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N~Q--  113 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ--  113 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTCHH--
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCCHH--
Confidence            467899999999888766   479999999999999665 4 889999999999999999999999997   555543  


Q ss_pred             HHHHHHHHHH
Q 024858          197 KRAEELLLEL  206 (261)
Q Consensus       197 ~~a~~~l~~l  206 (261)
                        |..+...+
T Consensus       114 --A~~Lk~~I  121 (134)
T 3o48_A          114 --VGALKSMV  121 (134)
T ss_dssp             --HHHHHHHH
T ss_pred             --HHHHHHHH
Confidence              55555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.21  E-value=0.011  Score=54.32  Aligned_cols=170  Identities=8%  Similarity=-0.053  Sum_probs=102.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC--------SKQSQESLDNVLIDLYK   74 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~--------P~~~~~~~~~~L~~ly~   74 (261)
                      ....|+.++|...|++|+.. |.....+...+..    .+.++....+.......        +......++...+..+.
T Consensus       223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~  297 (493)
T 2uy1_A          223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL  297 (493)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence            34678999999999999999 9876554433332    11112211111111101        11111234444566667


Q ss_pred             HcCCHHHHHHHHHHHHHhhcchh--hhcCcchHHHhhch-------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGE--AFNGKPTKTARSHG-------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAE  143 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~--~~~~~~~~~~~~~~-------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~  143 (261)
                      +.|..+.|..+|.++ . .|+..  .+.. ........+       ..+.  +..-|+.++.+...+......|+.+.|.
T Consensus       298 r~~~~~~AR~i~~~A-~-~~~~~~~v~i~-~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR  374 (493)
T 2uy1_A          298 KKRGLELFRKLFIEL-G-NEGVGPHVFIY-CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR  374 (493)
T ss_dssp             HHHCHHHHHHHHHHH-T-TSCCCHHHHHH-HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHHh-h-CCCCChHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            778888898888888 3 23211  1100 000000000       1122  2334777888887888888999999999


Q ss_pred             HHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          144 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       144 ~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      ..|.++    +.+.. |......-...|+.+.+..++++++.
T Consensus       375 ~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          375 ALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999998    44566 77777777888999999999998875

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.11  E-value=0.0048  Score=48.14  Aligned_cols=116  Identities=10%  Similarity=-0.068  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcC---Cc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc--hhhhc
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLC---SK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ--GEAFN  100 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~---P~----~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~--~~~~~  100 (261)
                      +..-...+...|.|+-|+-+...++.+.   |+    .........+|+++..+|+|..|...|+++|.+...  ...-.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3444566778899999998888766543   22    011224466999999999999999999999987420  00000


Q ss_pred             CcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858          101 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ........+....  .. .+...++.+.++.||..+|++++|+..++.
T Consensus       103 ~~~~~~~ss~p~s--~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          103 RPSTGNSASTPQS--QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccCCCccc--cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            0000000000000  00 123457889999999999999999998765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.08  E-value=0.018  Score=44.20  Aligned_cols=128  Identities=9%  Similarity=-0.038  Sum_probs=82.4

Q ss_pred             HcCCChHHHHHHHHHHHHHcCCc------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858           21 NAGDRVDSALKDMAVVMKQLDRS------EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        21 ~~~p~~~~al~~Lg~~~~~~g~~------~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~   94 (261)
                      -..|++++.|......+-..|+.      ++-++.|++++..-|..-...+.   --+|.-. +|.    .|   .++..
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wr---rYI~LWI-rYA----~~---~ei~D   75 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNE---SFARIQV-RFA----EL---KAIQE   75 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCH---HHHHHHH-HHH----HH---HHHHC
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHH---HHHHHHH-HHH----HH---HHhcC
Confidence            35799999999988888888999      88889999999887763111111   1122322 111    11   11111


Q ss_pred             chhhhcCcchHHHhhchhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCC
Q 024858           95 QGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTR  171 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~  171 (261)
                      .+.+            ...++  +.+-..++.+|...|..-.++|+...|.+.+.+|+.+.|........+..-++.|+
T Consensus        76 ~d~a------------R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~  142 (161)
T 4h7y_A           76 PDDA------------RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQK  142 (161)
T ss_dssp             GGGC------------HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTC
T ss_pred             HHHH------------HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCC
Confidence            1111            11111  12244577899999999999999999999999999999988776655555555553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.86  E-value=0.016  Score=51.43  Aligned_cols=105  Identities=13%  Similarity=0.058  Sum_probs=77.3

Q ss_pred             HcCCHHHHHHHHHHHHHhhcchhhhcCcch-HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           75 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPT-KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        75 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      ..|+.++|++.+++++.+. .|..+.+... .-.......+.    -....++..++.++...|++.+|+..+++++..+
T Consensus       127 ~~~~~~~a~~~l~~Al~L~-rG~~L~~~~~~~w~~~~r~~l~----~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~  201 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREW-RGPVLDDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGRASAVIAELEALTFEH  201 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-CSSTTGGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHHHhc-CCCCCCCCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4689999999999999983 4443332110 00000000000    0112466778899999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      |-+.. +..|-.+|...|+..+|+++|+++..
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99998 88999999999999999999998765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.013  Score=56.61  Aligned_cols=134  Identities=15%  Similarity=0.164  Sum_probs=85.3

Q ss_pred             HcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcch-hhhcCcchHHHhhchhhhh
Q 024858           39 QLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGKKFQ  115 (261)
Q Consensus        39 ~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~-g~~~eA~~~~~~al~l~~~~-~~~~~~~~~~~~~~~~~~~  115 (261)
                      ..++ ++-|+..+++....+|.... .+...+..+.... .+--+|+..+.+.++-.... .........       .  
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~-------~--  329 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD-------S--  329 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH-------H--
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc-------c--
Confidence            3455 57799999999999997321 1111122222222 34567888888887532100 000000000       0  


Q ss_pred             hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHH
Q 024858          116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  182 (261)
Q Consensus       116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~  182 (261)
                      ..+.|-....+.-=+..+..+|+++-|+.+-++|+.+-|+... |..|+.||+.+|+|+.|+-.+.-.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            0000111234444577788899999999999999999999998 999999999999999999776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.58  E-value=0.072  Score=50.76  Aligned_cols=112  Identities=19%  Similarity=0.030  Sum_probs=69.5

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhh
Q 024858           38 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  117 (261)
Q Consensus        38 ~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (261)
                      .+.|++++|.+..+   .++ +   ...+..||..+.+.|+++.|+.+|.++-...                  ....+.
T Consensus       663 l~~~~~~~A~~~~~---~~~-~---~~~W~~la~~al~~~~~~~A~~~y~~~~d~~------------------~l~~l~  717 (814)
T 3mkq_A          663 LKVGQLTLARDLLT---DES-A---EMKWRALGDASLQRFNFKLAIEAFTNAHDLE------------------SLFLLH  717 (814)
T ss_dssp             HHHTCHHHHHHHHT---TCC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH------------------HHHHHH
T ss_pred             hhcCCHHHHHHHHH---hhC-c---HhHHHHHHHHHHHcCCHHHHHHHHHHccChh------------------hhHHHH
Confidence            45566666665542   222 1   2245569999999999999999999853321                  000011


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 024858          118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       118 l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                      ...++.+.+..++......|+++.|..+|.+.     .+  ......+|.+.+++++|+.+.++
T Consensus       718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~--~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD--IQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC--HHHHHHHHHHcCChHHHHHHHHH
Confidence            11345566777888888888888888776652     11  22334557777777777776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.19  E-value=0.048  Score=48.40  Aligned_cols=85  Identities=16%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHHHHHc--CC------C--------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHH
Q 024858            6 QKDPEAAIVLFWKAINA--GD------R--------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   63 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~--~p------~--------------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~   63 (261)
                      .|+.+.|...+++|+.+  +|      .              ...++..++..+...|++.+|+..++.++..+|-  ++
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~--~E  205 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY--RE  205 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH
Confidence            57888899999999863  21      1              1223344777788999999999999999999997  35


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           64 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        64 ~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      .++..|..+|...|+..+|+..|++.-+.
T Consensus       206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          206 PLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            56666888899999999999999997664

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.97  E-value=0.07  Score=53.03  Aligned_cols=99  Identities=9%  Similarity=0.018  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      .++.|.+.|.+.|+.++|..+++..-++...|                     +.| +.-+++.|-..|.+.|+.++|..
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---------------------~~P-dvvTYNtLI~Glck~G~~~eA~~  186 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---------------------KLL-TLDMYNAVMLGWARQGAFKELVY  186 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---------------------TTC-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---------------------CCC-CHhHHHHHHHHHHhCCCHHHHHH
Confidence            36778999999999999999998765431100                     001 23578889999999999999999


Q ss_pred             HHHHHHh--hCCCchhhhhHHHHHHHcCC-HHHHHHHHHHHHhC
Q 024858          145 VYQKAQM--IDPDANKACNLGLCLIKRTR-YNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~--~~P~~~~~~~L~~~l~~~g~-~~eA~~~~~~~l~~  185 (261)
                      .|++..+  +.||...+..|-.++.+.|+ .++|.+++++....
T Consensus       187 Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            9999986  45877777778889999998 57889999998885

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.97  E-value=0.063  Score=49.34  Aligned_cols=62  Identities=13%  Similarity=0.011  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..+.+||.+..-...++.|..+|.+|+.+.|++.. ++.||.+....|+.-+|.-+|-+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46678999999999999999999999999999999 999999999999999999999999997

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.25  Score=47.63  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHH--HHcCCcHHHHHHHHHHHh--------cCCchh--------HHHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVM--KQLDRSEEAIEAIKSFRG--------LCSKQS--------QESLDNVLI   70 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~--~~~g~~~eAi~~~~~~~~--------~~P~~~--------~~~~~~~L~   70 (261)
                      .+.|+.++++....+|.+...+.......  ....+--+|+.++.+.++        +.+.+.        ...+...-+
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            57799999998888887654332221111  122345567777766653        122211        112444557


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           71 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        71 ~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      ..+...|+++-|+++-++++...|                          ..-..|..|+.+|..+|+|+.|+-.+.-.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aP--------------------------seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELAL--------------------------DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCS--------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCc--------------------------hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            778899999999999999998754                          34569999999999999999999876654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.48  E-value=0.34  Score=45.98  Aligned_cols=44  Identities=16%  Similarity=-0.006  Sum_probs=33.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF   53 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~   53 (261)
                      .-|+++.|.+..+     ..+.+..|..||..+.+.|+++.|+.+|.++
T Consensus       664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456666555543     3356788999999999999999999999875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.47  E-value=0.49  Score=37.14  Aligned_cols=54  Identities=13%  Similarity=0.073  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL   90 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al   90 (261)
                      ++.-+.++.   +.|+++.|.+..+..   +-    ...+..||+....+|+++-|+.+|+++-
T Consensus         8 ~~~rF~LAL---~lg~l~~A~e~a~~l---~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B            8 PHIRFDLAL---EYGNLDAALDEAKKL---ND----SITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHHH---HTTCHHHHHHHHHHH---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hHHHHHHHH---hcCCHHHHHHHHHHh---CC----HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            344444444   678888888886654   21    2234558888888899999888888853

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.37  E-value=0.18  Score=42.29  Aligned_cols=56  Identities=20%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   59 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~   59 (261)
                      +..|++++|+......|+.+|.+.+.-..|-.+++-.|+++.|.+.++.+.+++|+
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            45566666666666666666666666666666666666666666666666666665

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.34  E-value=0.063  Score=40.19  Aligned_cols=86  Identities=6%  Similarity=-0.131  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS---EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~---~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      +.....-|..-. .+.-.+.+.+++|..+......   .++|.+++..++..|.. .......|+..+.+.|+|++|..+
T Consensus        23 L~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y  100 (134)
T 3o48_A           23 LEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRY  100 (134)
T ss_dssp             HHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334444444433 2333467888888888776544   47889999999888853 233445588889999999999999


Q ss_pred             HHHHHHhhcch
Q 024858           86 LKRKLRLIYQG   96 (261)
Q Consensus        86 ~~~al~l~~~~   96 (261)
                      .+.+|++.|.+
T Consensus       101 ~d~lL~~eP~N  111 (134)
T 3o48_A          101 VDTLFEHERNN  111 (134)
T ss_dssp             HHHHHTTCTTC
T ss_pred             HHHHHhhCCCC
Confidence            99999986643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.29  E-value=1.5  Score=38.97  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=73.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      -|+.+|...|+|.+|...+.+.++-...             ...+..       .-+++..-..+|..+|++.++...|.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~-------------~dd~~~-------llev~lle~~~~~~~~n~~k~k~~l~  163 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKK-------------LDDKNL-------LVEVQLLESKTYHALSNLPKARAALT  163 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTT-------------SSCTHH-------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhc-------------cccchh-------HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            5889999999999999999998774210             000111       13577888999999999999999999


Q ss_pred             HHHhhC---CCch----h-hhhHHHHHH-HcCCHHHHHHHHHHHHhC
Q 024858          148 KAQMID---PDAN----K-ACNLGLCLI-KRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       148 ~al~~~---P~~~----~-~~~L~~~l~-~~g~~~eA~~~~~~~l~~  185 (261)
                      +|....   +.++    . ...-|..++ ..++|.+|...|-++...
T Consensus       164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            998654   1222    1 234588889 899999999999988753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.16  E-value=0.25  Score=49.11  Aligned_cols=102  Identities=10%  Similarity=-0.068  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCc
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRG-----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  102 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~-----~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~  102 (261)
                      .++..|-..|.+.|+.++|.+++..+..     ..|+   ...+|+|.+.|.+.|++++|.++|++..+.-         
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G---------  195 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAG---------  195 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------
Confidence            3466788889999999999999977542     4566   3457889999999999999999999986641         


Q ss_pred             chHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh--CCCch
Q 024858          103 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-MAAEVVYQKAQMI--DPDAN  157 (261)
Q Consensus       103 ~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~-~eA~~~~~~al~~--~P~~~  157 (261)
                                     +.| +.-+++.|-.++.+.|+. ++|..++++....  .||..
T Consensus       196 ---------------~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v  237 (1134)
T 3spa_A          196 ---------------LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL  237 (1134)
T ss_dssp             ---------------CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred             ---------------CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence                           112 234666677788888874 7888999998874  35544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.97  E-value=0.12  Score=39.09  Aligned_cols=86  Identities=6%  Similarity=-0.131  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS---EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~---~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      +.....-|..-.. ++-.+++.++.|..+......   .++|.+++..++..|.. .......|+..+.+.|+|++|..+
T Consensus        22 L~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y   99 (144)
T 1y8m_A           22 LEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRY   99 (144)
T ss_dssp             HHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHH
Confidence            3344444444322 355678889999888877654   47889999999988854 233455588889999999999999


Q ss_pred             HHHHHHhhcch
Q 024858           86 LKRKLRLIYQG   96 (261)
Q Consensus        86 ~~~al~l~~~~   96 (261)
                      .+..|++.|.+
T Consensus       100 ~d~lL~~eP~n  110 (144)
T 1y8m_A          100 VDTLFEHERNN  110 (144)
T ss_dssp             HHHHHHTCCCC
T ss_pred             HHHHHhcCCCc
Confidence            99999986643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.35  Score=43.59  Aligned_cols=101  Identities=17%  Similarity=0.178  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 024858           65 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  144 (261)
Q Consensus        65 ~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~  144 (261)
                      +...|+.+|...|++.+|...+.....-..             ....+..       -.+++.-...+|...+++..|..
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~-------------~~~~~~~-------kve~~l~q~rl~l~~~d~~~a~~  198 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETY-------------GSMEMSE-------KIQFILEQMELSILKGDYSQATV  198 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-------------SSSCHHH-------HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------hcccHHH-------HHHHHHHHHHHHHHCCCHHHHHH
Confidence            346689999999999999999999754211             0000110       12466777889999999999999


Q ss_pred             HHHHHHh---hCCCchh-----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          145 VYQKAQM---IDPDANK-----ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       145 ~~~~al~---~~P~~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .++++..   -.+.++.     ....|..+...++|.+|...|..+...
T Consensus       199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            9999742   2333332     245689999999999999999999874

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.84  E-value=0.51  Score=37.05  Aligned_cols=118  Identities=13%  Similarity=-0.057  Sum_probs=79.9

Q ss_pred             CChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           24 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        24 p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      |..++.-..+++++.-.|.+..+.-++.   .++   ..++... -.-+|.+.+++..|+..+++.++-.-...      
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lN---T~Ts~YY-k~LCy~klKdYkkA~~~le~il~~kvd~d------   96 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLH---KLN---TCTSKYY-ESLCYKKKKDYKKAIKSLESILEGKVERD------   96 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHH---TCC---BHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCSBCC------
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHH---hcc---hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccC------
Confidence            4445566678999999999998887652   222   1233333 45688999999999999999985310000      


Q ss_pred             hHHHhhchhhhh-hhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          104 TKTARSHGKKFQ-VSVRQETSRLLG-NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       104 ~~~~~~~~~~~~-~~l~p~~~~~~~-~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                          ......++ .-++|.+.+... -+|.++.+.|+-+||+.+|......+|=.+.
T Consensus        97 ----~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A           97 ----PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             ----CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             ----cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence                00011122 345677777555 4799999999999999999999999887665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.74  E-value=0.44  Score=39.99  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             HHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 024858           36 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ   95 (261)
Q Consensus        36 ~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~   95 (261)
                      .+.+.|..++|++.+...++.+|.++  .+...|..+|.-.|+++.|..-++.+.++.|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da--~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            34567888888888888888888854  34555778888888888888888888777653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.11  E-value=1.2  Score=39.43  Aligned_cols=102  Identities=10%  Similarity=-0.031  Sum_probs=74.2

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           32 DMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        32 ~Lg~~~~~~g~~~eAi~~~~~~~~~~P----~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      .||.+|.+.|++.+|.+.+.+.++-..    ...-..+...-..+|...|++.++..+|.++......  .+        
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--i~--------  173 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA--IY--------  173 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--CC--------
Confidence            589999999999999998887765322    2123345566778999999999999999999876310  00        


Q ss_pred             hhchhhhhhhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 024858          108 RSHGKKFQVSVRQETSRLLGNLAWAYM-QKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~-~~g~~~eA~~~~~~al~~  152 (261)
                       .++ ..       .+.+...-|..++ ..++|.+|...|-+++.-
T Consensus       174 -~~p-~i-------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          174 -CPP-KV-------QGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             -CCH-HH-------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             -CCH-HH-------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence             000 00       1234556788889 899999999999999853

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.96  E-value=0.35  Score=44.31  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..||++.+-.+.++.|...|.+|+.+.|                          ++...++.||.+...+|+.-+|+-+|
T Consensus       156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P--------------------------~~G~~~nqLavla~~~~~~l~a~y~y  209 (497)
T 1ya0_A          156 VHLGDIARYRNQTSQAESYYRHAAQLVP--------------------------SNGQPYNQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHhCC--------------------------CCCchHHHHHHHHhcccccHHHHHHH
Confidence            4589999999999999999999999854                          45568899999999999999999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHH
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIK  168 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~  168 (261)
                      .+++......+. ..||...+.+
T Consensus       210 ~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          210 CRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChhHHHHHHHHHHH
Confidence            999988776776 7788887765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.93  E-value=1.8  Score=33.91  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.-|+++.|....+..     +...-|..||..-..+|+++-|+.+|.++-..         .. |.-+|.-.|+.+.-.
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~-L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DK-LSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HH-HHHHHHHHTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HH-HHHHHHHhCCHHHHH
Confidence            4568899888887644     55778999999999999999999999775322         11 333566778876554


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  148 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~  148 (261)
                      ..-+.+...                  +             -++--..++..+|++++++..|.+
T Consensus        81 kla~iA~~~------------------g-------------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           81 KMQNIAQTR------------------E-------------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHT------------------T-------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHC------------------c-------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            433333221                  0             012234567789999999887755

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.85  E-value=0.16  Score=45.60  Aligned_cols=109  Identities=11%  Similarity=-0.010  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      ...++..+|..+.+.|++++|.++|.++...... ............++...|++..+...+.++-.+...+.    .  
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~----d--  203 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG----D--  203 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----C--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC----C--
Confidence            4557788999999999999999999998875543 11334555577888999999999999999877642110    0  


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                            .. .       .......-|.++...++|.+|...|..++.-..
T Consensus       204 ------~~-~-------~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          204 ------WE-R-------RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             ------TH-H-------HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             ------HH-H-------HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence                  00 0       012345568888999999999999999887543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.01  E-value=0.53  Score=42.14  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           66 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        66 ~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      ..-||..|.+.|++++|.++|.++......              .+         .--+++.++-.++...+++..+...
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--------------~~---------~kid~~l~~irl~l~~~d~~~~~~~  190 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS--------------TG---------AKIDVMLTIARLGFFYNDQLYVKEK  190 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--------------CC---------SHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------------hH---------HHHHHHHHHHHHHHHhccHHHHHHH
Confidence            355899999999999999999997764210              01         1235788888899999999999999


Q ss_pred             HHHHHhhCCC--chh-----hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          146 YQKAQMIDPD--ANK-----ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       146 ~~~al~~~P~--~~~-----~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.++-.....  ++.     ...-|..+...++|.+|...|-.++..
T Consensus       191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            9999765322  221     234578888899999999999988774

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.32  E-value=0.33  Score=44.57  Aligned_cols=132  Identities=14%  Similarity=0.088  Sum_probs=60.9

Q ss_pred             hhcCCHHHHHHHHHHHH-----------HcCCChHHHHHHHHHHHHHcCCcHHHH--------------HHHHHH-HhcC
Q 024858            4 LVQKDPEAAIVLFWKAI-----------NAGDRVDSALKDMAVVMKQLDRSEEAI--------------EAIKSF-RGLC   57 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al-----------~~~p~~~~al~~Lg~~~~~~g~~~eAi--------------~~~~~~-~~~~   57 (261)
                      +-.+++++|..+-...+           .+|+-.+..|+..+.++-..|+..+..              ..++.+ ++.+
T Consensus       147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D  226 (523)
T 4b4t_S          147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD  226 (523)
T ss_dssp             --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence            34566777766665443           124445677887888888888776632              122221 2233


Q ss_pred             CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 024858           58 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  137 (261)
Q Consensus        58 P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g  137 (261)
                      +. ....+.|.+...|...+.++.|..+..++.  .|...+-+                   +.....++.+|.++.-++
T Consensus       227 ~~-~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn-------------------~q~~rY~YY~GRI~a~q~  284 (523)
T 4b4t_S          227 NE-TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSS-------------------SLEARYFFYLSKINAIQL  284 (523)
T ss_dssp             SC-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCH-------------------HHHHHHHHHHHHHHHHTT
T ss_pred             cc-hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCH-------------------HHHHHHHHHHHHHHHHhc
Confidence            33 356788889999999999999999998863  23111100                   011346788999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCch
Q 024858          138 NFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus       138 ~~~eA~~~~~~al~~~P~~~  157 (261)
                      +|.+|..++..|+..-|.+.
T Consensus       285 ~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          285 DYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             CHHHHHHHHHHHTSSCSCSS
T ss_pred             cHHHHHHHHHHHHHhCCcch
Confidence            99999999999999877553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.41  E-value=6  Score=35.41  Aligned_cols=105  Identities=10%  Similarity=0.117  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcch
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  104 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~----~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  104 (261)
                      .-..|+.++...|++.+|...+.....    ..+..--.........+|...+++..|...++++........       
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-------  211 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-------  211 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-------
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-------
Confidence            345689999999999999998887542    222211234456677899999999999999999754211000       


Q ss_pred             HHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858          105 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus       105 ~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                           .....       -...+...|.++...++|.+|..+|..++..
T Consensus       212 -----~~~~l-------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          212 -----KYESL-------KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             -----CCHHH-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             -----CcHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                 00000       0235567899999999999999999999864

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=90.22  E-value=6.9  Score=32.25  Aligned_cols=150  Identities=19%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chh--hhcCcc
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGE--AFNGKP  103 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~--~~~~~~  103 (261)
                      -+..++.+.-|.+||++.++..+++...++.-..+ =.|+|...|.      ..+...|.++++..   +..  ..+-..
T Consensus         6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~E-ERnLLSvAYK------Nvig~rR~swRiissieqke~~~~~~~~   78 (248)
T 3uzd_A            6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNE-ERNLLSVAYK------NVVGARRSSWRVISSIEQKTSADGNEKK   78 (248)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHC---CCC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHH-HHHHHHHHHH------hhcccchHHHHHHHHHHHHhhccCCHHH
Confidence            45668889999999999999999999988752222 2444554443      22333333333210   000  000000


Q ss_pred             ------------hHHHhhchhhhh---hhcCCC--c----HHH--HHHHHHHHHHc----------CCHHHHHHHHHHHH
Q 024858          104 ------------TKTARSHGKKFQ---VSVRQE--T----SRL--LGNLAWAYMQK----------TNFMAAEVVYQKAQ  150 (261)
Q Consensus       104 ------------~~~~~~~~~~~~---~~l~p~--~----~~~--~~~Lg~~~~~~----------g~~~eA~~~~~~al  150 (261)
                                  ..+...+...+.   -.+-|.  +    ..+  +-..|..|.-.          .-.+.|...|++|.
T Consensus        79 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~  158 (248)
T 3uzd_A           79 IEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAH  158 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence                        000000011111   011111  1    112  22345555322          22367888999887


Q ss_pred             h-----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858          151 M-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       151 ~-----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~  185 (261)
                      .     +.|.+|-    ..|.+.+|.+ +++.++|..+.++++..
T Consensus       159 ~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~  203 (248)
T 3uzd_A          159 EISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD  203 (248)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5     6788884    3466666655 69999999988887764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.12  E-value=5.7  Score=31.17  Aligned_cols=71  Identities=18%  Similarity=0.164  Sum_probs=56.4

Q ss_pred             CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hc--C-------------CchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           23 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR--GL--C-------------SKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus        23 ~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~--~~--~-------------P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .-+...+...-+.++...+++..|+..++..+  +.  +             |.+ .+...+.+|.++.+.|..+|||..
T Consensus        58 ~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D-kEfFy~l~a~lltq~g~r~EaI~y  136 (242)
T 3kae_A           58 KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD-EEFFESLLGDLCTLSGYREEGIGH  136 (242)
T ss_dssp             TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch-HHHHHHHHHHHHHHhcCHHHhhhH
Confidence            34556677778899999999999999999988  22  2             322 344567899999999999999999


Q ss_pred             HHHHHHhhc
Q 024858           86 LKRKLRLIY   94 (261)
Q Consensus        86 ~~~al~l~~   94 (261)
                      |.......+
T Consensus       137 ~~~Sf~~~~  145 (242)
T 3kae_A          137 YVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHCC
T ss_pred             hhhhcCCcc
Confidence            999888753

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.00  E-value=2.5  Score=42.61  Aligned_cols=139  Identities=9%  Similarity=0.041  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchh
Q 024858           33 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  112 (261)
Q Consensus        33 Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~  112 (261)
                      +...+...|+++-+.+    .....|.++..  ..++|.+|...|++++|.++|+++-.-..............    ..
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~----~~  887 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIA--VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREF----QE  887 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHH--HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHH----HH
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHH--HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccc----cc
Confidence            4455666677765544    34455654322  36799999999999999999998633211111000000000    00


Q ss_pred             hhh-hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-Cch----h-hhhHHHHHHHcCCHHHHHHHHHH
Q 024858          113 KFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DAN----K-ACNLGLCLIKRTRYNEARSVLED  181 (261)
Q Consensus       113 ~~~-~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P-~~~----~-~~~L~~~l~~~g~~~eA~~~~~~  181 (261)
                      ... .......+..+..+..++.+.|.++.+++.-+.|++..+ ++.    . |.++=......|+|++|...+-.
T Consensus       888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            000 011112345778889999999999999999999998764 332    2 56777888999999999776643

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.94  E-value=14  Score=31.58  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=62.4

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHH----HhcCCchhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhcchhhhcCcchH
Q 024858           32 DMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKKCGKV--EEQIEMLKRKLRLIYQGEAFNGKPTK  105 (261)
Q Consensus        32 ~Lg~~~~~~g~~~eAi~~~~~~----~~~~P~~~~~~~~~~L~~ly~~~g~~--~eA~~~~~~al~l~~~~~~~~~~~~~  105 (261)
                      .+..=|..++++++|++++...    ++..-...-..+...+.++|.+.+-.  ++.+.-+.+.+...|+...-.   .+
T Consensus        38 tl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r---~~  114 (312)
T 2wpv_A           38 TIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL---KD  114 (312)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH---HH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH---HH
Confidence            3556677888999999876542    22222222334555667777776553  444444444444434321100   00


Q ss_pred             HHhhchhhhh--hhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858          106 TARSHGKKFQ--VSV---RQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus       106 ~~~~~~~~~~--~~l---~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      ..   .+.+.  ...   .-.+|+.|..+|..|...|++.+|..+|-
T Consensus       115 fi---~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          115 VI---TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HH---HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HH---HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            00   00000  001   12478999999999999999999999885

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=86.40  E-value=12  Score=30.64  Aligned_cols=151  Identities=19%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---chhhhcCcc-
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFNGKP-  103 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~---~~~~~~~~~-  103 (261)
                      +-+..++.+.-|.+||++.+...+++...+|.-..+ =.|+|...|..      .+...|.++++..   +...-.+.. 
T Consensus         6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~E-ERnLLsvayKn------vig~rR~swRiissieqk~~~k~~~~   78 (234)
T 2br9_A            6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVE-ERNLLSVAYKN------VIGARRASWRIISSIEQKEENKGGED   78 (234)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHH-HHHHHHHHHHH------HHhhhHHHHHHHHHHHHHhhccCchH
Confidence            345678889999999999999999999988752222 24556555432      3333333333310   000000000 


Q ss_pred             ---------h----HHHhhchhhhh---hhcCCC--c--HHH--HHHHHHHHHH----------cCCHHHHHHHHHHHHh
Q 024858          104 ---------T----KTARSHGKKFQ---VSVRQE--T--SRL--LGNLAWAYMQ----------KTNFMAAEVVYQKAQM  151 (261)
Q Consensus       104 ---------~----~~~~~~~~~~~---~~l~p~--~--~~~--~~~Lg~~~~~----------~g~~~eA~~~~~~al~  151 (261)
                               .    .+...+...+.   -.+-|.  +  ..+  +-..|..|.-          ..-.+.|...|++|+.
T Consensus        79 ~~~~i~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~  158 (234)
T 2br9_A           79 KLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASD  158 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence                     0    00000000010   011111  1  111  1234544432          2233578889999885


Q ss_pred             -----hCCCchh----hhhHHHHHHH-cCCHHHHHHHHHHHHhC
Q 024858          152 -----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       152 -----~~P~~~~----~~~L~~~l~~-~g~~~eA~~~~~~~l~~  185 (261)
                           +.|.+|-    ..|.+.+|.+ +|+.++|..+.++++..
T Consensus       159 iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~  202 (234)
T 2br9_A          159 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  202 (234)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 5788874    3466666665 79999999998887774

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.61  E-value=19  Score=33.77  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ...+.++ +.|+++.|...+++.-.-.++... .+-+|.++..+|+.++|..+|+++...
T Consensus       290 ~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~  348 (618)
T 1qsa_A          290 RRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ  348 (618)
T ss_dssp             HHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence            3445554 569999999999775442223344 678999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
           Q +   AI  F KA+        A  ++  V+K+    + A+ A      L    +   +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--V 239

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFNGKPTKTARSHGKKFQVS 117
              L  +Y + G ++  I+  +R + L             A   K +           + 
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

Query: 118 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEAR 176
           +    +  L NLA    ++ N   A  +Y+KA  + P+   A  NL   L ++ +  EA 
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359

Query: 177 SVLEDVL 183
              ++ +
Sbjct: 360 MHYKEAI 366

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 29/169 (17%)

Query: 1   MVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 60
            V   Q   + AI  + +AI        A  ++A  +K+     EA +       L    
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN--TALRLCP 302

Query: 61  SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 120
           +     N L ++ ++ G +EE + + ++ L +                            
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------FP 336

Query: 121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK 168
           E +    NLA    Q+     A + Y++A  I P    A  N+G  L +
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 128 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 183
            LA    Q  +F AAE    +    +PD       L     +  R + +       +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 113 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTR 171
              +S+    + + GNLA  Y ++     A   Y++A  + P    A CNL   L ++  
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 172 YNEARSVLEDVLY 184
             EA       L 
Sbjct: 287 VAEAEDCYNTALR 299

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 8/139 (5%)

Query: 45  EAIEAIKSF-RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL------IYQGE 97
             I  ++   +   +    E   N+ + L    G   + ++ L     +           
Sbjct: 67  NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQL 126

Query: 98  AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-A 156
                      +  K    S        L +L      +     AE  Y+ A  + P   
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG 186

Query: 157 NKACNLGLCLIKRTRYNEA 175
                L +    +  +   
Sbjct: 187 QPYNQLAILASSKGDHLTT 205

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 18/178 (10%), Positives = 40/178 (22%), Gaps = 31/178 (17%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
                  +       N           + ++  +   +   ++        CS   Q  L
Sbjct: 99  SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP---QSSSCSYICQHCL 155

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
            + L D+ +   +  +     +   +L                               + 
Sbjct: 156 VH-LGDIARYRNQTSQAESYYRHAAQL--------------------------VPSNGQP 188

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDV 182
              LA     K + +     Y ++  +      A  NL   L K     +       V
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGV 246

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
           +KD + A+  F    +   R      ++  +   L    EA +A           +    
Sbjct: 18  KKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 74

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 125
              ++  Y +  K +  I+ LK  L  +   +  + K             +  +     +
Sbjct: 75  QRGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYK----------ILGLQFKLFACEV 122

Query: 126 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVLY 184
           L N+A+ Y +K  +  AE     A  +  +   +  +  +  + + +  E   +    L+
Sbjct: 123 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLF 182

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/189 (9%), Positives = 47/189 (24%), Gaps = 13/189 (6%)

Query: 6   QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 65
                 A   F +A+     +      + + + Q    + A EA  S   L    +    
Sbjct: 50  LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-- 107

Query: 66  DNVLIDLYKKCGKVEEQIEMLKRKLRL----------IYQGEAFNGKPTKTARSHGKKFQ 115
                      G+ +   + L    +           +Y  E    +            +
Sbjct: 108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167

Query: 116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNE 174
               Q    ++        ++T     +        +    ++    LG   +     + 
Sbjct: 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227

Query: 175 ARSVLEDVL 183
           A ++ +  +
Sbjct: 228 ATALFKLAV 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.85
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.6
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.54
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.53
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.5
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.39
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.35
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.3
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.09
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.06
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.73
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.22
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.86
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.77
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	86.52
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	82.93
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.04
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.91

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.5e-21  Score=163.61  Aligned_cols=201  Identities=16%  Similarity=0.124  Sum_probs=158.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++.++|++.  .....+|.+|...|++++|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc--ccccccccccccccccccc
Confidence            56789999999999999999999999999999999999999999999999999999853  4556689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcC---------------cchHHHhhch------hhhh--hhcCCC--cHHHHHHHHHHHHHcC
Q 024858           83 IEMLKRKLRLIYQGEAFNG---------------KPTKTARSHG------KKFQ--VSVRQE--TSRLLGNLAWAYMQKT  137 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~---------------~~~~~~~~~~------~~~~--~~l~p~--~~~~~~~Lg~~~~~~g  137 (261)
                      ++.+++++.+.|.......               .........+      ..+.  +.++|+  .+.++.++|.++..+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  186 (323)
T d1fcha_         107 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  186 (323)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            9999999998664321110               0000000000      0111  456665  4678899999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----------chhhHHHHHHHHHH
Q 024858          138 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLE  205 (261)
Q Consensus       138 ~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~----------~~~~~~~a~~~l~~  205 (261)
                      ++++|+..|++++..+|+++. +.++|.++..+|++++|+..|++++..++..+.          ..+.++.|.+.+..
T Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  265 (323)
T d1fcha_         187 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE  265 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999998 999999999999999999999999997322211          23455566666655

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.1e-21  Score=165.53  Aligned_cols=180  Identities=19%  Similarity=0.194  Sum_probs=149.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|...+.+++..+|+++.++..+|.++...|++++|+..++++....|..+  .....+|.+|.+.|++++|
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A  256 (388)
T d1w3ba_         179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA--VVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             ccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH--HHHHHHHHHHHHCCCHHHH
Confidence            34678999999999999999999999999999999999999999999999999999843  3455689999999999999


Q ss_pred             HHHHHHHHHhhcchh-hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024858           83 IEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        83 ~~~~~~al~l~~~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~  153 (261)
                      +..|++++++.|... ++.. ........+      ..+.  +...|+.+.++..+|.++..+|++++|+..|+++++++
T Consensus       257 ~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         257 IDTYRRAIELQPHFPDAYCN-LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999876432 2110 000000001      0111  46678889999999999999999999999999999999


Q ss_pred             CCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          154 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       154 P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      |+++. +.++|.+|..+|++++|+..|++++..
T Consensus       336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99998 899999999999999999999999997

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.7e-20  Score=157.18  Aligned_cols=183  Identities=17%  Similarity=0.137  Sum_probs=143.3

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHH-------H------HH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL-------D------NV   68 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~-------~------~~   68 (261)
                      +....|++++|+..|.+++..+|+++.++..+|.++...|++++|++.+++++...|.......       .      ..
T Consensus        62 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (323)
T d1fcha_          62 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR  141 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred             HHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchh
Confidence            3466899999999999999999999999999999999999999999999999998886311100       0      00


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhcchh---hhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcC
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRLIYQGE---AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKT  137 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l~~~~~---~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g  137 (261)
                      ....+...+.+.+|+..|++++++.|...   .+.. ........+      ..+.  +.+.|+++.++.++|.+|..+|
T Consensus       142 ~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  220 (323)
T d1fcha_         142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  220 (323)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh-hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccc
Confidence            11223456778888888888888765321   1110 000001111      1111  5678999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          138 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       138 ~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++|+..|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus       221 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999 999999999999999999999999996

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-20  Score=159.90  Aligned_cols=155  Identities=12%  Similarity=0.012  Sum_probs=136.6

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~-~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ...+.+++|+.+|.+||+++|++..+|++.|.++...|+ +++|+..+++++..+|++.  .+++.+|.++...|++++|
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~--~a~~~~~~~~~~l~~~~eA  131 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVLVEWLRDPSQE  131 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTTH
T ss_pred             HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh--hHHHHHhHHHHhhccHHHH
Confidence            356788999999999999999999999999999999886 8999999999999999953  4566689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      ++.++++++++                          |++..+|.++|+++...|++++|+..|+++++++|++.. |.+
T Consensus       132 l~~~~kal~~d--------------------------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~  185 (315)
T d2h6fa1         132 LEFIADILNQD--------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ  185 (315)
T ss_dssp             HHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhhhhhh--------------------------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHH
Confidence            99999999974                          456778999999999999999999999999999999988 889


Q ss_pred             HHHHHHHcCC------HHHHHHHHHHHHhCC
Q 024858          162 LGLCLIKRTR------YNEARSVLEDVLYGR  186 (261)
Q Consensus       162 L~~~l~~~g~------~~eA~~~~~~~l~~~  186 (261)
                      +|.++...|+      +++|+..+.+++..+
T Consensus       186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~  216 (315)
T d2h6fa1         186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV  216 (315)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHccccchhhhhHHhHHHHHHHHHhC
Confidence            9998888776      678899998888873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.2e-20  Score=158.45  Aligned_cols=167  Identities=19%  Similarity=0.168  Sum_probs=135.9

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      ....|++++|+..|.+++..+|..+..+..+|.++...|++++|+..|++++.++|+++  .....+|.+|...|++++|
T Consensus       213 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A  290 (388)
T d1w3ba_         213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANALKEKGSVAEA  290 (388)
T ss_dssp             HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH--HHHHHHHHHHHHHSCHHHH
T ss_pred             hhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence            45678999999999999999999999999999999999999999999999999999853  3455689999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhch------hhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  154 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P  154 (261)
                      +..|++++...|................+      ..+.  +.+.|+++.++.++|.+|..+|++++|+..|++|++++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999998876543211100001111111      1121  578899999999999999999999999999999999999


Q ss_pred             Cchh-hhhHHHHHHHcCC
Q 024858          155 DANK-ACNLGLCLIKRTR  171 (261)
Q Consensus       155 ~~~~-~~~L~~~l~~~g~  171 (261)
                      +++. +.+||.+|.++|+
T Consensus       371 ~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         371 TFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHcCC
Confidence            9999 9999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.7e-18  Score=143.23  Aligned_cols=198  Identities=11%  Similarity=-0.051  Sum_probs=142.1

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      +....|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|+++++++|+++  .....+|.+|...|++++
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~  123 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKL  123 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh--hhHHHHHHHHHHHhhHHH
Confidence            456789999999999999999999999999999999999999999999999999999854  345668999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhc---CcchHHHhhch--hhh-h--hhcCCCcHHHHHHHHHHH----HHcCCHHHHHHHHHHH
Q 024858           82 QIEMLKRKLRLIYQGEAFN---GKPTKTARSHG--KKF-Q--VSVRQETSRLLGNLAWAY----MQKTNFMAAEVVYQKA  149 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~---~~~~~~~~~~~--~~~-~--~~l~p~~~~~~~~Lg~~~----~~~g~~~eA~~~~~~a  149 (261)
                      |+..|++++++.|......   +..........  ..+ .  ..+.+...  ..++...+    ...+.++.+...+...
T Consensus       124 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
T d1xnfa_         124 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNIVEFYLGNISEQTLMERLKADATDN  201 (259)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999876432111   00000000000  000 0  12222221  11222222    2345577777888888


Q ss_pred             HhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858          150 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  206 (261)
Q Consensus       150 l~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l  206 (261)
                      +...|+... +++||.+|..+|++++|+..|++++..   .|.+...+..+...|..+
T Consensus       202 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~a~~~L~~l  256 (259)
T d1xnfa_         202 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHNFVEHRYALLELSLL  256 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTTCHHHHHHHHHHHHH
T ss_pred             hhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHh
Confidence            888888888 899999999999999999999999997   344333344455555444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=149.33  Aligned_cols=140  Identities=10%  Similarity=0.040  Sum_probs=129.0

Q ss_pred             HHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhcchhh
Q 024858           20 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK-VEEQIEMLKRKLRLIYQGEA   98 (261)
Q Consensus        20 l~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~-~~eA~~~~~~al~l~~~~~~   98 (261)
                      |..+|+..+++..+|.++.+.+++++|++.+++++.++|++  ..+++..|.++...|+ +++|+..++++++++     
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~--~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-----  108 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-----  108 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-----
Confidence            45678899999999999999999999999999999999995  3456678999999875 999999999999974     


Q ss_pred             hcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHH
Q 024858           99 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~  177 (261)
                                           |++..+|.++|.++..+|++++|+..|.++++++|++.. |.++|.++...|++++|+.
T Consensus       109 ---------------------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~  167 (315)
T d2h6fa1         109 ---------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ  167 (315)
T ss_dssp             ---------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             ---------------------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHH
Confidence                                 467889999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHhCCC
Q 024858          178 VLEDVLYGRI  187 (261)
Q Consensus       178 ~~~~~l~~~~  187 (261)
                      .|++++..++
T Consensus       168 ~~~~al~~~p  177 (315)
T d2h6fa1         168 YVDQLLKEDV  177 (315)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHHCC
Confidence            9999999843

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.3e-17  Score=118.63  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHh
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  108 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~  108 (261)
                      -+...|..+...|++++|+..|+++++.+|.++  .++..+|.+|.++|++++|+..|++++++.               
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------   67 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------   67 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch--hhhhcccccccccccccccchhhhhHHHhc---------------
Confidence            356678888888888888888888888888843  355668888888888888888888888763               


Q ss_pred             hchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH
Q 024858          109 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  166 (261)
Q Consensus       109 ~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l  166 (261)
                                 |+++.++.++|.+|..+|++++|+..|+++++++|+++. +.+++.+.
T Consensus        68 -----------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          68 -----------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             -----------cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence                       456778888888888888888888888888888888887 77777654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1e-16  Score=132.35  Aligned_cols=150  Identities=13%  Similarity=0.005  Sum_probs=129.6

Q ss_pred             CHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            8 DPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         8 ~~~~A~~~~~~al~~----~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      +.+.|+.-+.+++..    +|..+.+++++|.+|..+|++++|+..|++++.++|+++  ..++.+|.+|.+.|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~--~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--HHHhhhchHHHHHHHHHHhh
Confidence            455677788888864    445677899999999999999999999999999999954  45667999999999999999


Q ss_pred             HHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhH
Q 024858           84 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  162 (261)
Q Consensus        84 ~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L  162 (261)
                      ..|++++++.                          |+++.++.++|.+|..+|++++|+..|+++++++|++.. ...+
T Consensus        92 ~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          92 EAFDSVLELD--------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HHHHHHHHHC--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhHHHHHH--------------------------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Confidence            9999999974                          456789999999999999999999999999999999988 7788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Q 024858          163 GLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       163 ~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.++...+..+.+..........
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhhHHHHHHHHHHhhcc
Confidence            88888888877777666665554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.3e-16  Score=121.44  Aligned_cols=125  Identities=17%  Similarity=0.070  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      +.+...|..+.+.|++++|+..|++++.++|+++  ..+..+|.+|...|++++|+..|+++++++              
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--------------   74 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELD--------------   74 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh--hhhhhhHHHHHhccccchHHHHHHHHHHHc--------------
Confidence            4466789999999999999999999999999953  456679999999999999999999999974              


Q ss_pred             hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHH--HHcCCHHHHHHHHH
Q 024858          108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL--IKRTRYNEARSVLE  180 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l--~~~g~~~eA~~~~~  180 (261)
                                  |++..++.++|.+|..+|++++|+..|++++.++|+++. +..++.+.  ...+.+++|+....
T Consensus        75 ------------p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  138 (159)
T d1a17a_          75 ------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  138 (159)
T ss_dssp             ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence                        467789999999999999999999999999999999998 76776653  44556667765433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.8e-16  Score=125.25  Aligned_cols=141  Identities=18%  Similarity=0.117  Sum_probs=113.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+..|.++   .|.++.+++++|.++..+|++++|++.|+++++++|+++  ..+..+|.+|.++|++++|
T Consensus        15 ~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~--~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh--hhHHHHHHHHHhhccHHHH
Confidence            46789999999999864   566788999999999999999999999999999999954  4566699999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      +..|++++...+.......          ....+..+....++++++|.+|..+|++++|+..|.+|+.+.|+...
T Consensus        90 ~~~~~kAl~~~~~n~~~~~----------~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHhCccCchHHH----------HHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence            9999999987542211100          00001111234578999999999999999999999999999998643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.6e-16  Score=123.15  Aligned_cols=125  Identities=13%  Similarity=0.079  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  109 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~  109 (261)
                      +.+.|..+...|++++|++.|+++   .|.++  .+++.+|.+|..+|++++|+..|+++++++                
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~--~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld----------------   66 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHS--RICFNIGCMYTILKNMTEAEKAFTRSINRD----------------   66 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHh----------------
Confidence            456799999999999999999864   34332  245569999999999999999999999974                


Q ss_pred             chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----------------h-hhhHHHHHHHcCCH
Q 024858          110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------------K-ACNLGLCLIKRTRY  172 (261)
Q Consensus       110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~----------------~-~~~L~~~l~~~g~~  172 (261)
                                |+++.++.++|.+|.++|++++|+..|++|+...|.+.                . ++++|.++..+|++
T Consensus        67 ----------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~  136 (192)
T d1hh8a_          67 ----------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW  136 (192)
T ss_dssp             ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred             ----------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence                      56788999999999999999999999999998876542                3 56899999999999


Q ss_pred             HHHHHHHHHHHhC
Q 024858          173 NEARSVLEDVLYG  185 (261)
Q Consensus       173 ~eA~~~~~~~l~~  185 (261)
                      ++|++.+++++..
T Consensus       137 ~~A~~~l~~A~~~  149 (192)
T d1hh8a_         137 KKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999997

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=9.2e-17  Score=127.95  Aligned_cols=125  Identities=12%  Similarity=-0.016  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      ++.+...|..+.+.|++++|+..|++++.++|+++  .+++.+|.+|.+.|++++|+..|++++++.             
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~--~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-------------   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD-------------   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------------
Confidence            45688899999999999999999999999999853  456679999999999999999999998874             


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHH
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVL  179 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~  179 (261)
                                   |+++.+|.++|.+|..+|++++|+..|++|+.++|++.. +..++......++...+....
T Consensus        69 -------------p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (201)
T d2c2la1          69 -------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  129 (201)
T ss_dssp             -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHHHHH
Confidence                         567889999999999999999999999999999998876 666666666655555444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.2e-16  Score=113.42  Aligned_cols=92  Identities=20%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      ..|+.+.+.|++++|+..|+++++++                          |+++.++.++|.+|..+|++++|+..|.
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~   61 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLD--------------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGC   61 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------Ccchhhhhcccccccccccccccchhhh
Confidence            36888899999999999999999874                          5678899999999999999999999999


Q ss_pred             HHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          148 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       148 ~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++.++|+++. ++++|.++..+|++++|+..|++++..
T Consensus        62 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          62 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999 999999999999999999999999998

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.1e-15  Score=119.82  Aligned_cols=92  Identities=18%  Similarity=0.105  Sum_probs=87.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      ..|+.|.+.|+|++|+..|+++|+++                          |+++.+|.++|.+|..+|++++|+..|+
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~--------------------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~   62 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQPEQALADCR   62 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHhHHHHHhhhhhhhhhhHHHH
Confidence            47899999999999999999999974                          5678899999999999999999999999


Q ss_pred             HHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          148 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       148 ~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|++++|++.. ++++|.+|..+|++++|+..|++++..
T Consensus        63 ~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999 999999999999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-14  Score=113.97  Aligned_cols=132  Identities=16%  Similarity=0.149  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~-------------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      +..++..|..+..+|++++|+..|++++...|...             ...+.+.+|.+|.+.|++++|+..++++++++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            45678899999999999999999999999877411             11234558889999999999999999998874


Q ss_pred             cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCH
Q 024858           94 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  172 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~  172 (261)
                                                |+++.++.++|.+|..+|++++|+..|+++++++|+++. ...++.+....++.
T Consensus        93 --------------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 --------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                                      467789999999999999999999999999999999988 77888888777666


Q ss_pred             HHHH-HHHHHHHh
Q 024858          173 NEAR-SVLEDVLY  184 (261)
Q Consensus       173 ~eA~-~~~~~~l~  184 (261)
                      .+.. ..|++++.
T Consensus       147 ~~~e~~~~~~~f~  159 (170)
T d1p5qa1         147 LAREKKLYANMFE  159 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6554 23444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.6e-14  Score=122.27  Aligned_cols=162  Identities=14%  Similarity=0.098  Sum_probs=130.0

Q ss_pred             hhcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLY   73 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~------~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~ly   73 (261)
                      -..|++++|+..|.+|+.+      .+....++.++|.+|.++|++++|+..|++++.+.+..    ........+|.+|
T Consensus        48 ~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  127 (290)
T d1qqea_          48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL  127 (290)
T ss_dssp             HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence            3568999999999999975      23456779999999999999999999999998876541    1123445577777


Q ss_pred             HH-cCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           74 KK-CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        74 ~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      .. .|++++|++.|++++++.+...              ..      +....++.++|.+|..+|+|++|+..|++++..
T Consensus       128 ~~~~~~~~~A~~~~~~A~~l~~~~~--------------~~------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         128 ENDLHDYAKAIDCYELAGEWYAQDQ--------------SV------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHTT--------------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcC--------------ch------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            55 6999999999999999853110              00      012357899999999999999999999999999


Q ss_pred             CCCchh--------hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 DPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~~--------~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .|.+..        +.++|.++...|+++.|...+++++..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             CccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            987752        357899999999999999999999987

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=3.3e-15  Score=109.32  Aligned_cols=90  Identities=16%  Similarity=0.064  Sum_probs=85.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      .+|..+.+.|++++|+..|++++++.                          |+++.++.++|.+|...|++++|+..|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~   74 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLAIIALN   74 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc--------------------------cccchhhhhhhhhhhhhhhHHHhhcccc
Confidence            37888999999999999999999874                          5678999999999999999999999999


Q ss_pred             HHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHH
Q 024858          148 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  183 (261)
Q Consensus       148 ~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l  183 (261)
                      ++++++|++.. +++||.+|..+|++++|++.++++|
T Consensus        75 ~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          75 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999 9999999999999999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.4e-17  Score=141.22  Aligned_cols=185  Identities=6%  Similarity=-0.101  Sum_probs=146.2

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE   81 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~--~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~e   81 (261)
                      ...|++++|+.+|+++++.+|++..++..+|.++...++  +++|+..+++++..+|.+... +...++.++...|++++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC-WDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhh-hhhHHHHHHHhccccHH
Confidence            456778899999999999999999999999999988876  789999999999999985332 34457788889999999


Q ss_pred             HHHHHHHHHHhhcchh-hhc---------Ccc----------hHHHhhchh----------------hhh--hhcCCCcH
Q 024858           82 QIEMLKRKLRLIYQGE-AFN---------GKP----------TKTARSHGK----------------KFQ--VSVRQETS  123 (261)
Q Consensus        82 A~~~~~~al~l~~~~~-~~~---------~~~----------~~~~~~~~~----------------~~~--~~l~p~~~  123 (261)
                      |+..++++++++|... +++         +..          .+.......                .+.  +..+|+..
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence            9999999999876432 211         100          000000000                001  45667777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcc
Q 024858          124 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCED  192 (261)
Q Consensus       124 ~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~  192 (261)
                      ..+.++|.++...|++++|+..+.+++..+|++.. +..+|.++..+|++++|+.+|++++..   +|.+
T Consensus       243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l---dP~~  309 (334)
T d1dcea1         243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV---DPMR  309 (334)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH---CGGG
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---Cccc
Confidence            77788999999999999999999999999999998 999999999999999999999999998   5544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-14  Score=111.69  Aligned_cols=117  Identities=12%  Similarity=-0.011  Sum_probs=100.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+..|++++|+.+|.++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++  .++..+|.+|...|++++|
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~--~a~~~~g~~~~~~g~~~eA   97 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKFRAA   97 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch--HHHHHHHHHHHHcCCHHHH
Confidence            46789999999999999999999999999999999999999999999999999999953  3456699999999999999


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH--HHcCCHHHHHHHHH
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY--MQKTNFMAAEVVYQ  147 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~--~~~g~~~eA~~~~~  147 (261)
                      +..|++++++.                          |+++.++..++.+.  ..++.+++|+....
T Consensus        98 ~~~~~~a~~~~--------------------------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  138 (159)
T d1a17a_          98 LRDYETVVKVK--------------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDE  138 (159)
T ss_dssp             HHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            99999999974                          45667777777664  44555666665433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=1.5e-15  Score=116.43  Aligned_cols=116  Identities=15%  Similarity=0.041  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858            7 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML   86 (261)
Q Consensus         7 ~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~   86 (261)
                      +.+++|+..|++|++.+|++++++.++|.++...+++..+.+                          ..+++++|+..|
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~Ai~~~   64 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQEAITKF   64 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHHHHHHH
Confidence            446677777777777777777777777777665444322222                          224557788888


Q ss_pred             HHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCC
Q 024858           87 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-----------FMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        87 ~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~-----------~~eA~~~~~~al~~~P~  155 (261)
                      +++++++                          |+++.+++++|.+|..+|+           +++|+.+|++|++++|+
T Consensus        65 ~kAl~l~--------------------------P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~  118 (145)
T d1zu2a1          65 EEALLID--------------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhc--------------------------chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence            8887763                          4677788888888877654           79999999999999999


Q ss_pred             chh-hhhHHHHHHHcCCHHH
Q 024858          156 ANK-ACNLGLCLIKRTRYNE  174 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~e  174 (261)
                      +.. +.+|+.+....+.+.+
T Consensus       119 ~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1         119 NTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             CHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            998 8889988644444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=4.4e-14  Score=110.33  Aligned_cols=115  Identities=16%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchh--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~--------------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~   94 (261)
                      .+...|..+...|++++|+..|++++...|...              .....+.+|.+|.+.|++++|+..|+++|++. 
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-  107 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  107 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence            456788888899999999999888876543210              11122334445555555555555555544432 


Q ss_pred             chhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858           95 QGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  169 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~  169 (261)
                                               |+++.++.++|.+|..+|++++|+..|+++++++|++.. ...|+.+..+.
T Consensus       108 -------------------------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         108 -------------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             -------------------------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                                     234444555555555555555555555555555555544 44444444333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.3e-15  Score=109.00  Aligned_cols=111  Identities=12%  Similarity=-0.023  Sum_probs=80.9

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhcchhhhcCcchHHH
Q 024858           31 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK---VEEQIEMLKRKLRLIYQGEAFNGKPTKTA  107 (261)
Q Consensus        31 ~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~---~~eA~~~~~~al~l~~~~~~~~~~~~~~~  107 (261)
                      .+++..+...+++++|++.|++++.++|+++  ...+.+|.++.+.++   +++|+..|++++...|.            
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~--~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~------------   68 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK------------   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH------------
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC------------
Confidence            3466677788888888888888888888843  344557777766444   44688888888776431            


Q ss_pred             hhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHH
Q 024858          108 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLI  167 (261)
Q Consensus       108 ~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~  167 (261)
                                  |+..+++++||.+|.++|++++|+.+|+++|+++|++.. ...++.+..
T Consensus        69 ------------~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          69 ------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             ------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ------------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence                        112457888898888889999999999999999888887 555555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.54  E-value=1.1e-13  Score=106.65  Aligned_cols=61  Identities=23%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          125 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       125 ~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++.|+|.+|.++|++++|+..|+++++++|++.. ++++|.++..+|++++|+..|++++..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666666666666665 666666666666666666666666665

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.53  E-value=2.1e-13  Score=106.45  Aligned_cols=121  Identities=15%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-------------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-------------~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      +..+...|..+...|++.+|+..|++++...|..             ....++..+|.+|.++|++++|+..++++++++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            4456678888888888888888888887654320             011223446777777888888888888877763


Q ss_pred             cchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCH
Q 024858           94 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  172 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~  172 (261)
                                                |++..+++++|.+|..+|++++|+..|.+++.++|++.. ...++.+....+.+
T Consensus        95 --------------------------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 --------------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence                                      345667777888888888888888888888888887777 66677766555544


Q ss_pred             H
Q 024858          173 N  173 (261)
Q Consensus       173 ~  173 (261)
                      .
T Consensus       149 ~  149 (168)
T d1kt1a1         149 N  149 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.4e-14  Score=124.45  Aligned_cols=141  Identities=9%  Similarity=-0.083  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCC
Q 024858            9 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK   78 (261)
Q Consensus         9 ~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~----------g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~   78 (261)
                      .++|+.++.+++..+|++.++|...+.++...          |++++|+..+++++..+|++.  .++..++.++...|+
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~--~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLSRLPE  122 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTCSS
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH--HHHHHhhHHHHHhcc
Confidence            47899999999999999999988777666544          447899999999999999853  344456767666665


Q ss_pred             --HHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024858           79 --VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL-LGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  155 (261)
Q Consensus        79 --~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~  155 (261)
                        +++|+..++++++++|                          ++..+ +..+|.++...|++++|+..++++++++|+
T Consensus       123 ~~~~~a~~~~~~al~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         123 PNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             ccHHHHHHHHHHHHhhCc--------------------------hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence              8999999999999854                          22333 345677777777777788777778877777


Q ss_pred             chh-hhhHHHHHHHcCCHHHHHH
Q 024858          156 ANK-ACNLGLCLIKRTRYNEARS  177 (261)
Q Consensus       156 ~~~-~~~L~~~l~~~g~~~eA~~  177 (261)
                      +.. |.++|.++..+|++++|+.
T Consensus       177 ~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         177 NYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHH
Confidence            777 7777777777776655433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.3e-13  Score=107.52  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=90.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024858           68 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  147 (261)
Q Consensus        68 ~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~  147 (261)
                      ..|..+...|+|++|+..|++++++.+......          ...-...++|....++.|+|.+|.++|++++|+..|.
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~  101 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA----------EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL  101 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS----------CHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh----------hhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhh
Confidence            357778899999999999999998754211110          0001134556678899999999999999999999999


Q ss_pred             HHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          148 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       148 ~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +|++++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus       102 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         102 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999 999999999999999999999999998

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-13  Score=106.15  Aligned_cols=108  Identities=20%  Similarity=0.175  Sum_probs=88.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ...|+.+.+.|+|++|+..|++++.+.+...........       ..    .+-...++.|+|.||..+|++++|+..+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~-------~~----~~~~~~~~~nla~~y~k~~~~~~A~~~~   85 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ-------KA----QALRLASHLNLAMCHLKLQAFSAAIESC   85 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH-------HH----HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh-------hh----chhHHHHHHHHHHHHHhhhhcccccchh
Confidence            347888999999999999999999986532221110000       00    0112357889999999999999999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++.++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            999999999999 999999999999999999999999998

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=6.1e-14  Score=102.38  Aligned_cols=93  Identities=16%  Similarity=-0.040  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhh
Q 024858           30 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  109 (261)
Q Consensus        30 l~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~  109 (261)
                      ...+|.++.+.|++++|+..+++++..+|+++  ..+..+|.+|.+.|++++|+..|++++++.                
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------   80 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLD----------------   80 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccc--hhhhhhhhhhhhhhhHHHhhcccccccccc----------------
Confidence            56789999999999999999999999999953  456679999999999999999999999974                


Q ss_pred             chhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024858          110 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  150 (261)
Q Consensus       110 ~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al  150 (261)
                                |+++.++.+||.+|..+|++++|++.+++.|
T Consensus        81 ----------p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 ----------PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                      5678899999999999999999999999986

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=131.04  Aligned_cols=194  Identities=11%  Similarity=0.001  Sum_probs=123.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHcCCHHHHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQI   83 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-~~~~~~~~~L~~ly~~~g~~~eA~   83 (261)
                      ..|++++|   |+++|..+|+.+.+....+.+..  ..+..+++.+++..+.... +........++.++...|.|+.|+
T Consensus        32 ~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai  106 (497)
T d1ya0a1          32 SRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLL  106 (497)
T ss_dssp             HHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555543   78888888877776555444432  2367788888887765432 112223344667777889999999


Q ss_pred             HHHHHHHHhhcchh-hhc--Ccch-HHHhhch--hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           84 EMLKRKLRLIYQGE-AFN--GKPT-KTARSHG--KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        84 ~~~~~al~l~~~~~-~~~--~~~~-~~~~~~~--~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      ..|++++.+.++.. .+.  |... +......  ..+...+.++...++.+||.++..+|++++|+.+|++|++++|+++
T Consensus       107 ~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~  186 (497)
T d1ya0a1         107 QELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG  186 (497)
T ss_dssp             HHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS
T ss_pred             HHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch
Confidence            99999888755321 111  1000 0000000  0111233445567899999999999999999999999999999999


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  206 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~a~~~l~~l  206 (261)
                      . +++||.++...|++.+|+.+|.+++..   .++.+........++...
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~---~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIAV---KFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHSS---SBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHh
Confidence            9 999999999999999999999999998   444444333334444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.9e-14  Score=103.86  Aligned_cols=93  Identities=15%  Similarity=0.191  Sum_probs=83.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..+|+.|...|+|++|+.+|++++++.                          |+++.++.|+|.+|.++|++++|+..|
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~   61 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD--------------------------PTNMTYITNQAAVYFEKGDYNKCRELC   61 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------cccHHHHHhHHHHHHHcCchHHHHHHH
Confidence            348889999999999999999999974                          467789999999999999999999999


Q ss_pred             HHHHhhCCCchh-h-------hhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANK-A-------CNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~-~-------~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +++++++|++.. +       .++|.++..++++++|+.+|++++..
T Consensus        62 ~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999998764 3       45778888999999999999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.9e-14  Score=103.89  Aligned_cols=107  Identities=12%  Similarity=-0.014  Sum_probs=89.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE   80 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g---~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~   80 (261)
                      +..+++++|+..|++++..+|.++++++++|.++...+   ++++|+..+++++..+|.+........||.+|.+.|+++
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~   89 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhH
Confidence            45678999999999999999999999999999998755   455799999999999987433345566999999999999


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  136 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~  136 (261)
                      +|+.+|+++|++.                          |++..++..++.+..+.
T Consensus        90 ~A~~~~~~aL~~~--------------------------P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          90 KALKYVRGLLQTE--------------------------PQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--------------------------cCCHHHHHHHHHHHHHH
Confidence            9999999999975                          45667777777766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=2.6e-13  Score=104.44  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHc
Q 024858          116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  169 (261)
Q Consensus       116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~  169 (261)
                      +.++|++..+++++|.+|..+|++++|+..|+++++++|++.. ...++.+..+.
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999998 77888876554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.9e-13  Score=98.54  Aligned_cols=111  Identities=9%  Similarity=0.144  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHH
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  106 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  106 (261)
                      +..+.++|..+...|++++|+..|++++.++|+++  .+...+|.+|.+.|++++|++.+++++++.|...         
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~---------   72 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---------   72 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH---------
Confidence            34577899999999999999999999999999853  4566699999999999999999999999865211         


Q ss_pred             HhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858          107 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus       107 ~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                           ...     +....++.++|.++..++++++|+.+|++++..+|+...
T Consensus        73 -----~~~-----~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~  114 (128)
T d1elra_          73 -----EDY-----RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV  114 (128)
T ss_dssp             -----TCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             -----HHH-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence                 000     012468899999999999999999999999999887543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2.1e-12  Score=109.04  Aligned_cols=139  Identities=12%  Similarity=0.060  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcc
Q 024858           28 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  103 (261)
Q Consensus        28 ~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~----~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  103 (261)
                      +.+...|.+|..+|++++|+++|++++.+.+.    .........+|.+|.+.|++++|++.|++++++.+..       
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-------  110 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------  110 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-------
Confidence            34556799999999999999999999887432    1122345668999999999999999999999985311       


Q ss_pred             hHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc------hh-hhhHHHHHHHcCCHHHH
Q 024858          104 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEA  175 (261)
Q Consensus       104 ~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~-~g~~~eA~~~~~~al~~~P~~------~~-~~~L~~~l~~~g~~~eA  175 (261)
                             +...      ....++.++|.+|.. .|++++|+.+|++|+++.+..      .. +.++|.++..+|+|++|
T Consensus       111 -------~~~~------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_         111 -------GQFR------RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             -------TCHH------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             -------ccch------hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence                   0000      023578899999865 699999999999999875432      23 57899999999999999


Q ss_pred             HHHHHHHHhCC
Q 024858          176 RSVLEDVLYGR  186 (261)
Q Consensus       176 ~~~~~~~l~~~  186 (261)
                      +..|++++...
T Consensus       178 ~~~~~~~~~~~  188 (290)
T d1qqea_         178 SDIYSKLIKSS  188 (290)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999999974

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=1.1e-12  Score=102.35  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      .-.|+.+.+.|+|.+|+..|++++.+.+......   ..        ......+-...++.|+|.||..+|++++|+..+
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~---~~--------~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS---EK--------ESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---HH--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc---hh--------hhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            3467788999999999999999998753111000   00        000011112457889999999999999999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ++++.++|++.. ++++|.+|..+|++++|+..|++++..
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999 999999999999999999999999998

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.7e-13  Score=124.79  Aligned_cols=134  Identities=10%  Similarity=0.058  Sum_probs=88.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .+.++.|+..|.+++..+|++..++.++|.++...|+.++|+..+++++..+|..    ....||+++...|++++|+..
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH----CLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHHHHHHHH----HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHcccHHHHHHH
Confidence            3456666667777777899999999999999999999999999999998877652    344589999999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  164 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~  164 (261)
                      |++++++.                          |++..++++||.++..+|++.+|+.+|.+++.++|..+. +.||+.
T Consensus       175 y~~A~~l~--------------------------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~  228 (497)
T d1ya0a1         175 YRHAAQLV--------------------------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHC--------------------------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHHHC--------------------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            99999984                          467789999999999999999999999999999999998 899999


Q ss_pred             HHHHc
Q 024858          165 CLIKR  169 (261)
Q Consensus       165 ~l~~~  169 (261)
                      ++.+.
T Consensus       229 ~~~~~  233 (497)
T d1ya0a1         229 ALSKA  233 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2.5e-11  Score=101.74  Aligned_cols=166  Identities=13%  Similarity=0.024  Sum_probs=133.1

Q ss_pred             chhhcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch----hHHHHHHHHHHH
Q 024858            2 VQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDL   72 (261)
Q Consensus         2 ~~~~~~~~~~A~~~~~~al~~~p~~-----~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~----~~~~~~~~L~~l   72 (261)
                      +.+..|++++|+.+|++++...|.+     ..++..+|.++..+|++++|+..+++++.+.|..    ........++.+
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  100 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  100 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            3467899999999999999988875     3578889999999999999999999998866531    122334668899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  152 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~  152 (261)
                      |...|++..|+..+.+++.+.+...             .     ...+....++.++|.++...|++++|...|.+++..
T Consensus       101 ~~~~~~~~~a~~~~~~al~~~~~~~-------------~-----~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_         101 LFAQGFLQTAWETQEKAFQLINEQH-------------L-----EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  162 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT-------------C-----TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcc-------------c-----chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            9999999999999999998743110             0     001123457788999999999999999999999998


Q ss_pred             CCCch-----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 DPDAN-----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 ~P~~~-----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+...     . ...++.++...|++.++...+.++...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  201 (366)
T d1hz4a_         163 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  201 (366)
T ss_dssp             TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            87643     2 356789999999999999999988774

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.39  E-value=2e-12  Score=99.49  Aligned_cols=117  Identities=10%  Similarity=-0.013  Sum_probs=89.3

Q ss_pred             HHHHHHH--HHHHHHcCCcHHHHHHHHHHHhcCCchh----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 024858           27 DSALKDM--AVVMKQLDRSEEAIEAIKSFRGLCSKQS----------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY   94 (261)
Q Consensus        27 ~~al~~L--g~~~~~~g~~~eAi~~~~~~~~~~P~~~----------~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~   94 (261)
                      ..++..+  |..+.+.|+|++|+..|++++.+.|+.+          ....++.+|.+|.+.|++++|+..+++++++.+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4555555  7788899999999999999999887521          123466799999999999999999999999854


Q ss_pred             chhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh
Q 024858           95 QGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  158 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~  158 (261)
                      .....+.          ..     .|....+++++|.+|..+|++++|+..|++|+++.|+...
T Consensus        87 ~~~~~~~----------~~-----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          87 RRGELNQ----------DE-----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHCCTTS----------TH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccccccc----------cc-----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            2110000          00     0113457899999999999999999999999999876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.9e-11  Score=103.79  Aligned_cols=152  Identities=10%  Similarity=-0.016  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            7 KDPEAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         7 ~~~~~A~~~~~~al~-~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      +..++|...|.+++. ..|.....+...+.++..+|++++|...|++++...|.+.. .++..++.+..+.|.+++|..+
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHH
Confidence            456789999999997 57888888999999999999999999999999999997532 3445578888999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCchh-hhhHH
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEVVYQKAQMIDPDANK-ACNLG  163 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~-~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~  163 (261)
                      |+++++..|                          .....+...|... ...|+.+.|...|++++...|+++. |...+
T Consensus       157 ~~~al~~~~--------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~  210 (308)
T d2onda1         157 FKKAREDAR--------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             HHHHHTSTT--------------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCC--------------------------CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999998743                          3445677777764 4568999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Q 024858          164 LCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       164 ~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      ..+...|+++.|..+|++++..
T Consensus       211 ~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         211 DYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHcCChHHHHHHHHHHHHh
Confidence            9999999999999999999996

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=1.3e-12  Score=99.70  Aligned_cols=87  Identities=11%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----------cCCHHHH
Q 024858           73 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----------KTNFMAA  142 (261)
Q Consensus        73 y~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----------~g~~~eA  142 (261)
                      |.+.++|++|+..|+++++++                          |++++++.++|.+|..          .+.+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--------------------------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~A   60 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEA   60 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--------------------------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            456788999999999999974                          5788999999999975          4556899


Q ss_pred             HHHHHHHHhhCCCchh-hhhHHHHHHHcCC-----------HHHHHHHHHHHHhC
Q 024858          143 EVVYQKAQMIDPDANK-ACNLGLCLIKRTR-----------YNEARSVLEDVLYG  185 (261)
Q Consensus       143 ~~~~~~al~~~P~~~~-~~~L~~~l~~~g~-----------~~eA~~~~~~~l~~  185 (261)
                      +..|++|++++|+++. ++++|.+|..+|+           +++|+..|++++..
T Consensus        61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            9999999999999999 9999999998864           68999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.5e-12  Score=88.66  Aligned_cols=83  Identities=18%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 024858           67 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  146 (261)
Q Consensus        67 ~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~  146 (261)
                      ..+|.++.+.|+|++|+..|++++++.+....                   ..++..+++.+||.+|.++|++++|+..|
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-------------------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y   69 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-------------------cCccHHHHHHHHhhHHHhcCChHHHHHHH
Confidence            34888999999999999999999998652110                   01234679999999999999999999999


Q ss_pred             HHHHhhCCCchh-hhhHHHHHHH
Q 024858          147 QKAQMIDPDANK-ACNLGLCLIK  168 (261)
Q Consensus       147 ~~al~~~P~~~~-~~~L~~~l~~  168 (261)
                      +++|+++|+++. +.|++.+...
T Consensus        70 ~~aL~l~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          70 KKLLELDPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999 8899876544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.30  E-value=1.4e-11  Score=94.51  Aligned_cols=102  Identities=16%  Similarity=-0.031  Sum_probs=80.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  149 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~a  149 (261)
                      |..+...|+|++|+..|+++|++.+.........              ..+....++.|+|.+|..+|++++|+..|+++
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~--------------~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD--------------HAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC--------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc--------------cchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            7778899999999999999999865211000000              00113458999999999999999999999999


Q ss_pred             HhhCCCc-------h----h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          150 QMIDPDA-------N----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       150 l~~~P~~-------~----~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      +.+.|+.       .    . ++++|.+|..+|++++|+..|++++..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9875532       2    2 578999999999999999999999986

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.28  E-value=2.7e-12  Score=107.59  Aligned_cols=133  Identities=13%  Similarity=-0.023  Sum_probs=103.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHH
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ   82 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA   82 (261)
                      .+.+|++++|+..|+++++.+|+++.++..||.+|...|++++|++.++++++++|++.  .....++.++...++.+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhccccHHH
Confidence            36789999999999999999999999999999999999999999999999999999843  3445566666555554443


Q ss_pred             HHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhh
Q 024858           83 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  161 (261)
Q Consensus        83 ~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~  161 (261)
                      ...+++...                         ...|+....+...+.++...|++++|+..++++.+..|+.+. +.+
T Consensus        84 ~~~~~~~~~-------------------------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          84 AQGAATAKV-------------------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             TTSCCCEEC-------------------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             HHHhhhhhc-------------------------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence            322221111                         112334456777899999999999999999999999999876 544


Q ss_pred             H
Q 024858          162 L  162 (261)
Q Consensus       162 L  162 (261)
                      .
T Consensus       139 ~  139 (264)
T d1zbpa1         139 T  139 (264)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=8.1e-11  Score=98.54  Aligned_cols=160  Identities=15%  Similarity=0.089  Sum_probs=109.5

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDR-----VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----QSQESLDNVLIDLY   73 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~-----~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~-----~~~~~~~~~L~~ly   73 (261)
                      ...|+++.|...|.+++...+.     ...++..++.++...+.+.++...+.++....+.     .....+...++.++
T Consensus       144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T d1hz4a_         144 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW  223 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            3456677777777766654332     3445566666677777777777666665543321     11122344566666


Q ss_pred             HHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 024858           74 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-  152 (261)
Q Consensus        74 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-  152 (261)
                      ...|++++|+..++++++..+..                      .+.....+.++|.+|..+|++++|+..+++++.. 
T Consensus       224 ~~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         224 QMTGDKAAAANWLRHTAKPEFAN----------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTT----------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHhcccc----------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            77777777777777666543210                      0112457789999999999999999999999854 


Q ss_pred             -----CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          153 -----DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       153 -----~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                           .|+... +..+|.+|..+|++++|+..+++++..
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 344555 788999999999999999999999885

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=2.6e-10  Score=89.72  Aligned_cols=64  Identities=13%  Similarity=-0.066  Sum_probs=60.0

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          121 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       121 ~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      ....++.+++.++..+|++++|+..+++++.++|.+.. |.+|+.+|..+|++++|+++|+++..
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999 99999999999999999999998755

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=6.2e-10  Score=94.14  Aligned_cols=154  Identities=5%  Similarity=-0.057  Sum_probs=128.9

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHcCCHHH
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGKVEE   81 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~-~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~l-y~~~g~~~e   81 (261)
                      ...|++++|...|.+++...|.+. .++...+....+.|.+++|+++|+++++..|....  +....+.+ +...|+.+.
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~--~~~~~a~~e~~~~~~~~~  187 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--VYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--HHHHHHHHHHHTSCCHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHhccCHHH
Confidence            357899999999999999988764 46888999999999999999999999999998533  33334444 345689999


Q ss_pred             HHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----
Q 024858           82 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----  157 (261)
Q Consensus        82 A~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~----  157 (261)
                      |..+|+++++..                          |+++.+|...+..+...|+++.|..+|++++...|.++    
T Consensus       188 a~~i~e~~l~~~--------------------------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~  241 (308)
T d2onda1         188 AFKIFELGLKKY--------------------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             HHHHHHHHHHHH--------------------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             HHHHHHHHHHhh--------------------------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence            999999999874                          35678899999999999999999999999999877554    


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      . |......-...|+.+.+..+++++...
T Consensus       242 ~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         242 EIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3 556677777889999999999999886

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.3e-10  Score=79.56  Aligned_cols=84  Identities=14%  Similarity=0.043  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcC
Q 024858           27 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  101 (261)
Q Consensus        27 ~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~-----~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~  101 (261)
                      ++-.+.+|.++.++|++.+|+..+++++++.|.+     ....+.+.||.+|.+.|++++|+..|+++|+++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--------   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--------   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--------
Confidence            4557889999999999999999999999886642     123456679999999999999999999999974        


Q ss_pred             cchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHc
Q 024858          102 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  136 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~  136 (261)
                                        |+++.++.|++.+...+
T Consensus        77 ------------------P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 ------------------PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHH
T ss_pred             ------------------cCCHHHHHHHHHHHHHh
Confidence                              57888999998776544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.06  E-value=1.5e-10  Score=96.63  Aligned_cols=123  Identities=14%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             HHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhh
Q 024858           36 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ  115 (261)
Q Consensus        36 ~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~  115 (261)
                      -+...|++++|++.++++++.+|+++  .....|+.+|...|++++|+..|++++++.|                     
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~--~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P---------------------   61 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFP---------------------   61 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG---------------------
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------
Confidence            34578999999999999999999954  4666799999999999999999999999854                     


Q ss_pred             hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchh-hhhHHHHHHHcCCHHHHHHHHHHHHhCC
Q 024858          116 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  186 (261)
Q Consensus       116 ~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~-~P~~~~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~  186 (261)
                           ++..++.+++.++...+..+++...+++.... +|+... +...+.++...|++++|...++++....
T Consensus        62 -----~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          62 -----EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             -----GGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             -----CcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                 56678889999998888888887776665544 344445 6678999999999999999999999973

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.05  E-value=5.2e-09  Score=85.90  Aligned_cols=174  Identities=19%  Similarity=0.142  Sum_probs=121.1

Q ss_pred             hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----
Q 024858            4 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----   75 (261)
Q Consensus         4 ~~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~----~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----   75 (261)
                      ..+||+++|+.+|++|.+.  ++++++.+||.++..    ..++..|+..++.+.......    ....++.++..    
T Consensus        13 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~----a~~~l~~~~~~~~~~   86 (265)
T d1ouva_          13 YKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSN----GCHLLGNLYYSGQGV   86 (265)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSS
T ss_pred             HHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccc----hhhcccccccccccc
Confidence            4578999999999999875  577899999999987    679999999999988765432    23335655554    


Q ss_pred             cCCHHHHHHHHHHHHHhhcchhhh-------cC---cc-hHHH-------hhc---------h-----------------
Q 024858           76 CGKVEEQIEMLKRKLRLIYQGEAF-------NG---KP-TKTA-------RSH---------G-----------------  111 (261)
Q Consensus        76 ~g~~~eA~~~~~~al~l~~~~~~~-------~~---~~-~~~~-------~~~---------~-----------------  111 (261)
                      .+..+.|...++++.+..+.....       .+   .. ...+       ...         +                 
T Consensus        87 ~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  166 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKAL  166 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             chhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccch
Confidence            578999999999998764321100       00   00 0000       000         0                 


Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHH
Q 024858          112 KKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDV  182 (261)
Q Consensus       112 ~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~  182 (261)
                      ..+....++.++.+.++||.+|..    ..++++|+.+|+++.+.  .++. .++||.+|..    ..++++|..+|+++
T Consensus       167 ~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         167 ASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  244 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             hhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence            001134466778888888888877    67888888888888776  3566 7788888875    34788888888888


Q ss_pred             HhC
Q 024858          183 LYG  185 (261)
Q Consensus       183 l~~  185 (261)
                      ...
T Consensus       245 a~~  247 (265)
T d1ouva_         245 CKL  247 (265)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=5.3e-08  Score=76.10  Aligned_cols=88  Identities=15%  Similarity=0.026  Sum_probs=77.4

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCC----------------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCch
Q 024858            3 QLVQKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   60 (261)
Q Consensus         3 ~~~~~~~~~A~~~~~~al~~~p~----------------------~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~   60 (261)
                      ....|++++|+..|.+|+.+.++                      ...++.+++.++...|++++|+..+++++..+|. 
T Consensus        21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-   99 (179)
T d2ff4a2          21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY-   99 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-
Confidence            35679999999999999997554                      2367888999999999999999999999999998 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           61 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        61 ~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                       ++..+..|+.+|...|++++|+..|+++.+.
T Consensus       100 -~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2         100 -REPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             4556777999999999999999999998765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.61  E-value=3.1e-07  Score=67.77  Aligned_cols=113  Identities=16%  Similarity=0.078  Sum_probs=74.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cCCHH
Q 024858            5 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVE   80 (261)
Q Consensus         5 ~~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g~~~   80 (261)
                      +++|+++|+.||+++.+.+  ++.+..+|+..  ...+.++|+..++++...+-.    .....||.+|..    ..+++
T Consensus         5 v~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~g~~----~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           5 VKKDLKKAIQYYVKACELN--EMFGCLSLVSN--SQINKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHH
T ss_pred             cccCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccCHHHHHHHHhhhhcccch----hhhhhHHHhhhhccccchhhH
Confidence            4568888999999988765  33455566542  345677777777777665422    233446666655    45677


Q ss_pred             HHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 024858           81 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMID  153 (261)
Q Consensus        81 eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~  153 (261)
                      +|+..|+++.+.                            .++.+..+||.+|..    ..++.+|+.+|++|.+..
T Consensus        77 ~A~~~~~~aa~~----------------------------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          77 KAAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhcc----------------------------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            777777777664                            245567777777766    457777777777776653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.42  E-value=1.3e-05  Score=64.80  Aligned_cols=154  Identities=14%  Similarity=0.012  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcchhhhc-
Q 024858           26 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFN-  100 (261)
Q Consensus        26 ~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~----~g~~~eA~~~~~~al~l~~~~~~~~-  100 (261)
                      +|+++.+||..+.+.|++.+|++.|+++...+..    .....||.+|..    ..++..|...++.+.....+....+ 
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence            4789999999999999999999999999877533    234558999987    7799999999999988754322111 


Q ss_pred             ------C-----cchHH------Hhhchhh-hh-------------------------hhcCCCcHHHHHHHHHHHHH--
Q 024858          101 ------G-----KPTKT------ARSHGKK-FQ-------------------------VSVRQETSRLLGNLAWAYMQ--  135 (261)
Q Consensus       101 ------~-----~~~~~------~~~~~~~-~~-------------------------~~l~p~~~~~~~~Lg~~~~~--  135 (261)
                            +     .....      +...+.. ..                         ....+..+..+.+||.+|..  
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~  156 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR  156 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence                  0     00000      0000001 00                         02344556667777777775  


Q ss_pred             --cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          136 --KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       136 --~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                        ..+...+...++++.+  +.++. .++||.+|..    ..++++|+.+|+++...
T Consensus       157 ~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         157 GTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             Ccccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence              4566677777777654  45666 7788888776    56788888888888775

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.4e-05  Score=58.39  Aligned_cols=108  Identities=16%  Similarity=0.057  Sum_probs=86.5

Q ss_pred             CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCC
Q 024858           42 RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE  121 (261)
Q Consensus        42 ~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  121 (261)
                      ++++|+..|+++...+-..+    ...|+.  ....++++|+..|+++.+.                            +
T Consensus         8 d~~~A~~~~~kaa~~g~~~a----~~~l~~--~~~~~~~~a~~~~~~aa~~----------------------------g   53 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFG----CLSLVS--NSQINKQKLFQYLSKACEL----------------------------N   53 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH----HHHHHT--CTTSCHHHHHHHHHHHHHT----------------------------T
T ss_pred             CHHHHHHHHHHHHHCCChhh----hhhhcc--ccccCHHHHHHHHhhhhcc----------------------------c
Confidence            67899999999988753322    223443  3457899999999998765                            3


Q ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchh-hhhHHHHHHH----cCCHHHHHHHHHHHHhC
Q 024858          122 TSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  185 (261)
Q Consensus       122 ~~~~~~~Lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~-~~~L~~~l~~----~g~~~eA~~~~~~~l~~  185 (261)
                      ++.+.++||.+|..    ..++++|+.+|+++.+.  .++. .++||.+|..    ..++++|..+|+++...
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            56789999999987    67899999999999876  5666 7899999987    46899999999999885

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=5.1e-06  Score=60.20  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchhhHH
Q 024858          123 SRLLGNLAWAYMQKT---NFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRK  197 (261)
Q Consensus       123 ~~~~~~Lg~~~~~~g---~~~eA~~~~~~al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~  197 (261)
                      ..+.++.||++....   +.++++..+++++..+|.+. + +++||..|.++|+|++|..+++++|..   +|.+.+   
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i---eP~n~q---  108 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ---  108 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHH---
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc---CCCcHH---
Confidence            568899999998664   45799999999999999876 5 899999999999999999999999998   565543   


Q ss_pred             HHHHHHHHH
Q 024858          198 RAEELLLEL  206 (261)
Q Consensus       198 ~a~~~l~~l  206 (261)
                       |.++...|
T Consensus       109 -A~~L~~~I  116 (124)
T d2pqrb1         109 -VGALKSMV  116 (124)
T ss_dssp             -HHHHHHHH
T ss_pred             -HHHHHHHH
Confidence             55554444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=5.3e-05  Score=54.67  Aligned_cols=65  Identities=8%  Similarity=-0.037  Sum_probs=52.4

Q ss_pred             HHHHHHHc---CCHHHHHHHHHHHHHhhcchhhhcCcchHHHhhchhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 024858           69 LIDLYKKC---GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  145 (261)
Q Consensus        69 L~~ly~~~---g~~~eA~~~~~~al~l~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~Lg~~~~~~g~~~eA~~~  145 (261)
                      .|..+.+.   ++.+++|.+++.+++..|.                         +.-+.+++||.+|.++|+|++|..+
T Consensus        41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-------------------------~~rd~lY~Lav~yyklgdy~~A~~~   95 (124)
T d2pqrb1          41 YAWGLIKSTDVNDERLGVKILTDIYKEAES-------------------------RRRECLYYLTIGCYKLGEYSMAKRY   95 (124)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-------------------------GHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhcCch-------------------------hHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45555554   4457899999998876431                         1136899999999999999999999


Q ss_pred             HHHHHhhCCCchh
Q 024858          146 YQKAQMIDPDANK  158 (261)
Q Consensus       146 ~~~al~~~P~~~~  158 (261)
                      ++++|+++|+|..
T Consensus        96 ~~~~L~ieP~n~q  108 (124)
T d2pqrb1          96 VDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHCTTCHH
T ss_pred             HHHHHccCCCcHH
Confidence            9999999999987

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=3.9  Score=34.13  Aligned_cols=168  Identities=10%  Similarity=0.017  Sum_probs=104.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 024858            6 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM   85 (261)
Q Consensus         6 ~~~~~~A~~~~~~al~~~p~~~~al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~~g~~~eA~~~   85 (261)
                      .+..+.|..+.........+.....-.++.. ...++...++..++.+-. .|.. ...+.+-+|..+.+.|+.++|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~~~~~~~~~~~~~~l~~-~~~~-~~r~~YW~gRa~~~~G~~~~A~~~  341 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPM-EAKE-KDEWRYWQADLLLERGREAEAKEI  341 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCT-TGGG-SHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccccchHHHHHHHHHH-HHcCChHHHHHHHHhcCc-cccc-HHHHHHHHHHHHHHcCChhhHHHH
Confidence            4556677777776666555554444344443 455788888877765422 2222 234566789999999999999999


Q ss_pred             HHHHHHhhcchhhhcCcchHHHhhchhhhh-----hhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 024858           86 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-----VSVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  157 (261)
Q Consensus        86 ~~~al~l~~~~~~~~~~~~~~~~~~~~~~~-----~~l~p~~---~~~~~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~  157 (261)
                      |.++..- + +  |.|...  ....+..+.     +...+..   ...-...+..+.+.|+..+|...++.++..-  ++
T Consensus       342 ~~~~a~~-~-~--fYG~LA--a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~  413 (450)
T d1qsaa1         342 LHQLMQQ-R-G--FYPMVA--AQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SK  413 (450)
T ss_dssp             HHHHHTS-C-S--HHHHHH--HHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CH
T ss_pred             HHHHhcC-C-C--hHHHHH--HHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CH
Confidence            9997652 2 1  211000  000000000     0000010   0112345778899999999999999887543  34


Q ss_pred             h-hhhHHHHHHHcCCHHHHHHHHHHHHh
Q 024858          158 K-ACNLGLCLIKRTRYNEARSVLEDVLY  184 (261)
Q Consensus       158 ~-~~~L~~~l~~~g~~~eA~~~~~~~l~  184 (261)
                      . ...++.+-.+.|.++.|+....++-.
T Consensus       414 ~~~~~la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         414 TEQAQLARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence            4 77889999999999999988877643

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=3.3  Score=34.67  Aligned_cols=57  Identities=12%  Similarity=0.152  Sum_probs=42.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-h-hhhHHHHHHHcCCHHHHHHHHHHHHhC
Q 024858          127 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       127 ~~Lg~~~~~~g~~~eA~~~~~~al~~~P~~~-~-~~~L~~~l~~~g~~~eA~~~~~~~l~~  185 (261)
                      .-++.+ ...+++..+...++.. .-.|... . .+-+|.++..+|+.++|...|..+...
T Consensus       290 w~~~~a-l~~~~~~~~~~~~~~l-~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~  348 (450)
T d1qsaa1         290 RRVRMA-LGTGDRRGLNTWLARL-PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ  348 (450)
T ss_dssp             HHHHHH-HHHTCHHHHHHHHHHS-CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHH-HHcCChHHHHHHHHhc-CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence            344554 4567999998888754 2233333 3 578999999999999999999998763

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.93  E-value=7.2  Score=29.78  Aligned_cols=155  Identities=17%  Similarity=0.120  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcchhhhc-----Cc
Q 024858           29 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIYQGEAFN-----GK  102 (261)
Q Consensus        29 al~~Lg~~~~~~g~~~eAi~~~~~~~~~~P~~~~~~~~~~L~~ly~~-~g~~~eA~~~~~~al~l~~~~~~~~-----~~  102 (261)
                      -+..++.+.-+.+||++.+...++++..+|.-..+ =.++|...|.. .|....+...+...-. ...+....     ..
T Consensus         5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~e-ERnLlsvayKn~i~~rR~s~R~l~~ie~-k~~~~~~~~~~i~~y   82 (230)
T d2o02a1           5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNE-ERNLLSVAYKNVVGARRSSWRVVSSIEQ-KTEGAEKKQQMAREY   82 (230)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-C------CHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHcCcchhhHHHHHH
Confidence            46678999999999999999999999998862222 24445544432 2222233222222111 00110000     00


Q ss_pred             c----hHHHhhchhhhhh---hcCCC--cHH----HHHHHHHHHHH----------cCCHHHHHHHHHHHHh-----hCC
Q 024858          103 P----TKTARSHGKKFQV---SVRQE--TSR----LLGNLAWAYMQ----------KTNFMAAEVVYQKAQM-----IDP  154 (261)
Q Consensus       103 ~----~~~~~~~~~~~~~---~l~p~--~~~----~~~~Lg~~~~~----------~g~~~eA~~~~~~al~-----~~P  154 (261)
                      .    ..+...+.....+   .+-|.  +++    .+...|..|.-          ..-.+.|...|++|+.     +.|
T Consensus        83 k~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~  162 (230)
T d2o02a1          83 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQP  162 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            0    0000000111110   11111  111    12234555432          1223579999999885     567


Q ss_pred             Cchh----hhhHHHHH-HHcCCHHHHHHHHHHHHhC
Q 024858          155 DANK----ACNLGLCL-IKRTRYNEARSVLEDVLYG  185 (261)
Q Consensus       155 ~~~~----~~~L~~~l-~~~g~~~eA~~~~~~~l~~  185 (261)
                      .+|-    ..|.+.+| --.|+.++|..+.++++..
T Consensus       163 t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~  198 (230)
T d2o02a1         163 THPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDE  198 (230)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7774    24555544 4469999999999988874

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.04  E-value=0.79  Score=29.32  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhh
Q 024858           70 IDLYKKCGKVEEQIEMLKRKLRLI   93 (261)
Q Consensus        70 ~~ly~~~g~~~eA~~~~~~al~l~   93 (261)
                      ++-+.+.|+|+|||++++++....
T Consensus        15 Aer~l~~~rydeAIech~kA~~yl   38 (83)
T d2crba1          15 ADRLLAAGKYEEAISCHRKATTYL   38 (83)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHH
Confidence            455578999999999999998863

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.91  E-value=12  Score=30.21  Aligned_cols=24  Identities=46%  Similarity=0.659  Sum_probs=16.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 024858           69 LIDLYKKCGKVEEQIEMLKRKLRL   92 (261)
Q Consensus        69 L~~ly~~~g~~~eA~~~~~~al~l   92 (261)
                      +...|...|.+++.+..++..+..
T Consensus       105 ~v~~ye~~~~~e~Li~~Le~~~~~  128 (336)
T d1b89a_         105 LINYYQDRGYFEELITMLEAALGL  128 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHcCChHHHHHHHHHHHcC
Confidence            455667777777777777776654