Citrus Sinensis ID: 024864

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc
MSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIvegnysqdrvvHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFsanalrdspfrqhaqpvtepppwsspvnasessqpsalppggvqvgnqlrrrpavdnapshhmEMSMLQQvvprqenysqSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
MSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEgnysqdrvvHSTTVCDDLKSKLMGATKELQDVLTTRtenikahesrkQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
MSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
*******PIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATK*L**V****************************************************************************************************AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV*
MSSMFDDPIVEIQELTALIKDDITALNMAL*******************************KSKLM******************************************************************************************************************NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
MSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQ***************************PGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
***MFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLE************HSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK****************************************************************HMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
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MSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q9FFK1336 Syntaxin-31 OS=Arabidopsi yes no 0.996 0.773 0.709 3e-97
Q9LK09347 Syntaxin-32 OS=Arabidopsi no no 0.954 0.717 0.527 3e-63
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.808 0.594 0.364 1e-29
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.808 0.594 0.360 3e-29
O13644309 Integral membrane protein yes no 0.873 0.737 0.349 3e-29
Q08851355 Syntaxin-5 OS=Rattus norv no no 0.804 0.591 0.354 2e-28
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.854 0.477 0.345 3e-28
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.804 0.591 0.354 3e-28
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.819 0.518 0.316 2e-23
Q01590340 Integral membrane protein yes no 0.869 0.667 0.298 5e-18
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function desciption
 Score =  354 bits (909), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/262 (70%), Positives = 217/262 (82%), Gaps = 2/262 (0%)

Query: 2   SSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDL 61
           S++F+D  VEIQELT LI++DIT LNMALSDLQTLQN+E+ +GNYSQD+V H T VCDDL
Sbjct: 75  STIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDL 134

Query: 62  KSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVN 121
           K++LMGATK+LQDVLTTR+EN+KAHE+RKQ+FS     DSP + +A+ V EPPPWSS  N
Sbjct: 135 KTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSN 194

Query: 122 ASESSQPSALPP--GGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVAL 179
              + Q   LPP   G   G+QLRRR A++NAPS  MEMS+LQQ VP+QENYSQSRAVAL
Sbjct: 195 PFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVAL 254

Query: 180 HNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 239
           H+VES ITEL GIF  LATMV QQGELAIRIDDNMDESL NVEGAR+ALL+HL +ISSNR
Sbjct: 255 HSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNR 314

Query: 240 WLMIKIFAVIIFFLTVFMFFVA 261
           WLM+KIFAVII FL VF+FFVA
Sbjct: 315 WLMMKIFAVIILFLIVFLFFVA 336
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
224112555347 predicted protein [Populus trichocarpa] 0.996 0.749 0.803 1e-122
255571871342 syntaxin, putative [Ricinus communis] gi 0.996 0.760 0.807 1e-120
359486424341 PREDICTED: syntaxin-31-like [Vitis vinif 0.942 0.721 0.821 1e-116
297736636 395 unnamed protein product [Vitis vinifera] 0.942 0.622 0.821 1e-114
356501139335 PREDICTED: syntaxin-31-like [Glycine max 0.996 0.776 0.762 1e-114
449463034338 PREDICTED: syntaxin-31-like [Cucumis sat 0.984 0.760 0.762 1e-113
449516073338 PREDICTED: syntaxin-31-like [Cucumis sat 0.984 0.760 0.762 1e-113
297810679336 T-snare sed 5 [Arabidopsis lyrata subsp. 0.996 0.773 0.736 1e-99
357494667334 Syntaxin-31 [Medicago truncatula] gi|355 0.923 0.721 0.722 2e-99
15239228336 syntaxin-31 [Arabidopsis thaliana] gi|28 0.996 0.773 0.709 2e-95
>gi|224112555|ref|XP_002316227.1| predicted protein [Populus trichocarpa] gi|222865267|gb|EEF02398.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/260 (80%), Positives = 233/260 (89%)

Query: 2   SSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDL 61
           SSMF+DP VEIQELT LIK+DITALN AL+DLQT+QN+EI +GNYS+DR VHSTTVCDDL
Sbjct: 88  SSMFNDPTVEIQELTVLIKNDITALNAALTDLQTIQNMEIADGNYSEDRFVHSTTVCDDL 147

Query: 62  KSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVN 121
           KSKLMGATK LQDVLTTRTENIKAHE+RKQIFS N  R++PF + A+P+TEPPPWS+P N
Sbjct: 148 KSKLMGATKRLQDVLTTRTENIKAHENRKQIFSTNVSRENPFLRQAKPMTEPPPWSNPSN 207

Query: 122 ASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHN 181
              +SQPS LPP  VQVGNQLRRRPAVDN PS HMEMSMLQQV PRQENY++SRAVALHN
Sbjct: 208 TFANSQPSGLPPNDVQVGNQLRRRPAVDNTPSQHMEMSMLQQVNPRQENYTESRAVALHN 267

Query: 182 VESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 241
           VESTI+ELGGIFTHLATMV +QG+LAIRIDDNMDES+ NVE AR +LLRHLNQISSNRWL
Sbjct: 268 VESTISELGGIFTHLATMVVEQGQLAIRIDDNMDESVNNVENARGSLLRHLNQISSNRWL 327

Query: 242 MIKIFAVIIFFLTVFMFFVA 261
           M+KIFAVIIFFL VF+ FVA
Sbjct: 328 MMKIFAVIIFFLIVFILFVA 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255571871|ref|XP_002526878.1| syntaxin, putative [Ricinus communis] gi|223533777|gb|EEF35509.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359486424|ref|XP_002268768.2| PREDICTED: syntaxin-31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736636|emb|CBI25507.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501139|ref|XP_003519386.1| PREDICTED: syntaxin-31-like [Glycine max] Back     alignment and taxonomy information
>gi|449463034|ref|XP_004149239.1| PREDICTED: syntaxin-31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516073|ref|XP_004165072.1| PREDICTED: syntaxin-31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297810679|ref|XP_002873223.1| T-snare sed 5 [Arabidopsis lyrata subsp. lyrata] gi|297319060|gb|EFH49482.1| T-snare sed 5 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357494667|ref|XP_003617622.1| Syntaxin-31 [Medicago truncatula] gi|355518957|gb|AET00581.1| Syntaxin-31 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15239228|ref|NP_196195.1| syntaxin-31 [Arabidopsis thaliana] gi|28380162|sp|Q9FFK1.1|SYP31_ARATH RecName: Full=Syntaxin-31; Short=AtSED5; Short=AtSYP31 gi|9759101|dbj|BAB09670.1| t-SNARE SED5 [Arabidopsis thaliana] gi|15809834|gb|AAL06845.1| AT5g05760/MJJ3_17 [Arabidopsis thaliana] gi|17978873|gb|AAL47408.1| AT5g05760/MJJ3_17 [Arabidopsis thaliana] gi|332003538|gb|AED90921.1| syntaxin-31 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.996 0.773 0.709 4.8e-95
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.536 0.394 0.397 6.4e-37
UNIPROTKB|B4DKR0259 STX5 "Syntaxin-5" [Homo sapien 0.536 0.540 0.390 1e-36
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.536 0.394 0.390 1e-36
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.536 0.394 0.390 1.3e-36
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.536 0.394 0.390 1.7e-36
MGI|MGI:1928483355 Stx5a "syntaxin 5A" [Mus muscu 0.536 0.394 0.390 3.5e-36
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.536 0.394 0.390 5.7e-36
ZFIN|ZDB-GENE-030131-1825347 stx5al "syntaxin 5A, like" [Da 0.402 0.302 0.419 3.4e-34
FB|FBgn0011708467 Syx5 "Syntaxin 5" [Drosophila 0.532 0.297 0.370 1.2e-33
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 929 (332.1 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
 Identities = 186/262 (70%), Positives = 217/262 (82%)

Query:     2 SSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDL 61
             S++F+D  VEIQELT LI++DIT LNMALSDLQTLQN+E+ +GNYSQD+V H T VCDDL
Sbjct:    75 STIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDL 134

Query:    62 KSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVN 121
             K++LMGATK+LQDVLTTR+EN+KAHE+RKQ+FS     DSP + +A+ V EPPPWSS  N
Sbjct:   135 KTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSN 194

Query:   122 ASESSQPSALPP--GGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVAL 179
                + Q   LPP   G   G+QLRRR A++NAPS  MEMS+LQQ VP+QENYSQSRAVAL
Sbjct:   195 PFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVAL 254

Query:   180 HNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 239
             H+VES ITEL GIF  LATMV QQGELAIRIDDNMDESL NVEGAR+ALL+HL +ISSNR
Sbjct:   255 HSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNR 314

Query:   240 WLMIKIFAVIIFFLTVFMFFVA 261
             WLM+KIFAVII FL VF+FFVA
Sbjct:   315 WLMMKIFAVIILFLIVFLFFVA 336
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKR0 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1928483 Stx5a "syntaxin 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1825 stx5al "syntaxin 5A, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0011708 Syx5 "Syntaxin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FFK1SYP31_ARATHNo assigned EC number0.70990.99610.7738yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X1705
hypothetical protein (347 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00051282
hypothetical protein (123 aa)
     •• 0.809
estExt_Genewise1_v1.C_LG_II2504
hypothetical protein (123 aa)
     •• 0.809
estExt_Genewise1_v1.C_LG_XIII2126
SubName- Full=Putative uncharacterized protein; (225 aa)
     •• 0.808
gw1.X.5541.1
hypothetical protein (110 aa)
     •• 0.805
eugene3.01580030
hypothetical protein (219 aa)
    ••  0.801
estExt_fgenesh4_pm.C_LG_III0135
hypothetical protein (218 aa)
    ••  0.801

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-10
pfam0573962 pfam05739, SNARE, SNARE domain 3e-10
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 4e-09
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 7e-06
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 5e-04
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information 
 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 166 PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 225
            +     + R   L  +E +I EL  IF  + T + +QGE   RI+DN+D++  N++ A 
Sbjct: 1   QQALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60

Query: 226 NALLRH 231
             L + 
Sbjct: 61  KRLKKA 66

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.93
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.92
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.91
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.81
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.47
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.38
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.28
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.9
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.66
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 97.96
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.76
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.62
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.32
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.08
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 96.99
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.76
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.76
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 96.71
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 96.27
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.26
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.12
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 95.84
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 92.97
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 91.75
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 91.46
KOG2678244 consensus Predicted membrane protein [Function unk 91.36
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 90.88
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 89.95
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 89.61
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 88.28
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 88.02
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 86.13
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 85.7
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 85.01
KOG3850 455 consensus Predicted membrane protein [Function unk 84.62
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-46  Score=324.13  Aligned_cols=240  Identities=40%  Similarity=0.576  Sum_probs=190.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864            2 SSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTE   81 (261)
Q Consensus         2 k~~FdD~~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~   81 (261)
                      |++|||++.||.+||+.||++|..++..|..|+.+.+..+.  ..+.+...|+++||..|+++|++++++|+.+++.|++
T Consensus        71 ks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn--~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rte  148 (311)
T KOG0812|consen   71 KSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGN--LSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTE  148 (311)
T ss_pred             cccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhcc--ccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            79999999999999999999999999999999999854432  2235669999999999999999999999999999999


Q ss_pred             HHHHHHhHhhhhhccccCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhH
Q 024864           82 NIKAHESRKQIFSANALRDSPF-RQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSM  160 (261)
Q Consensus        82 ~lk~~~~Rr~~f~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~  160 (261)
                      ++|+.+.||++|+...++.++. ++..+.  .+.|+.       .+. +   |.  ..+++...+.+..+.+..   +++
T Consensus       149 nmka~k~R~dkfs~~~a~~~a~p~~n~~a--~~~~~~-------~l~-~---~~--~~~sq~~~~ln~gd~~~~---qqq  210 (311)
T KOG0812|consen  149 NMKAVKNRRDKFSASYASLNANPVSNSAA--RLHPLK-------LLV-D---PK--DEASQDVESLNMGDSSNP---QQQ  210 (311)
T ss_pred             HHHHHhhHHHHhccccCCCCCcccCcccc--cCCchh-------hhc-C---ch--hhcccccccccccCCCCC---HHH
Confidence            9999999999998754332220 110000  000100       000 0   00  000000000111111111   256


Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCch
Q 024864          161 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW  240 (261)
Q Consensus       161 q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~  240 (261)
                      |++++++.++|+++|..++++||.+|.||++||.+||+||.+|||++.|||.||+++..||++|+.+|.|++++.++|||
T Consensus       211 Qm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRw  290 (311)
T KOG0812|consen  211 QMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRW  290 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchH
Confidence            77778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 024864          241 LMIKIFAVIIFFLTVFMFFVA  261 (261)
Q Consensus       241 ~~~~i~~vl~i~~~~~~~~~~  261 (261)
                      ++++||+|+|||+++|+||+|
T Consensus       291 LmvkiF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  291 LMVKIFGILIVFFLVFVLFLA  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999986

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG3850 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 9e-15
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 3e-14
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 2e-11
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 2e-11
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 9e-11
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 1e-10
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 4e-10
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-09
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 5e-08
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
 Score = 67.5 bits (165), Expect = 9e-15
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 155 HMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNM 214
           HM+ S+ +Q +    +  ++R   +  +E++I EL  +F  +A +V  QGE+  RI+ N+
Sbjct: 3   HMDSSISKQAL----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58

Query: 215 DESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV 260
           + ++  VE A +   + +   S  R   I I    +    +    +
Sbjct: 59  EHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.93
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.92
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.92
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.89
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.87
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.85
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.85
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.82
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.82
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.64
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.57
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.94
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 97.69
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.22
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.2
1s94_A180 S-syntaxin; three helix bundle, structural plastic 97.02
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.45
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.44
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.16
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.13
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.65
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 95.59
3b5n_D64 Protein transport protein SEC9; snare complex, syn 95.36
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 94.59
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.06
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.93
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 90.06
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 87.26
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 86.29
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.93  E-value=1.2e-27  Score=214.35  Aligned_cols=195  Identities=18%  Similarity=0.200  Sum_probs=124.2

Q ss_pred             CCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-C--CCchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864            3 SMFDD---PIVEIQELTALIKDDITALNMALSDLQTLQNLEIVE-G--NYSQD-RVVHSTTVCDDLKSKLMGATKELQDV   75 (261)
Q Consensus         3 ~~FdD---~~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~-~--~~~~~-~~~~~~nvv~~L~~kl~~~s~~Fr~~   75 (261)
                      |.|+|   ...+|+.|+..|++.+..|+..|+.|+...+..... +  ..+.. +..+..+++..|+.+|++++..|+++
T Consensus        78 ~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~  157 (279)
T 2xhe_B           78 VSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDV  157 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777   347999999999999999999999999866533210 0  11222 56899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchh
Q 024864           76 LTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHH  155 (261)
Q Consensus        76 ~~~r~~~lk~~~~Rr~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~  155 (261)
                      +..|.+++|.+..|.  |...+    |           .+  .. +..+.+.         ..|.           +.  
T Consensus       158 Q~~y~e~~k~~~~R~--~~i~~----~-----------~~--~~-ee~~~~~---------e~g~-----------~~--  195 (279)
T 2xhe_B          158 QAENKRRYGENVARQ--CRVVE----P-----------SL--SD-DAIQKVI---------EHGT-----------EG--  195 (279)
T ss_dssp             HHHHHHHHHHTTTTS--CCSSC----C-----------CC--SS-TTHHHHH---------HHC----------------
T ss_pred             HHHHHHHHHHHHHHH--HHHhC----C-----------CC--CH-HHHHHHH---------hCCc-----------hH--
Confidence            999999999876553  21110    1           00  00 0000000         0000           00  


Q ss_pred             hhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864          156 MEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI  235 (261)
Q Consensus       156 ~~~~~q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~  235 (261)
                      .+++.+.+..+....++++|+++|.+||++|.||++||+|||+||++||++||+||+||+.|..||++|+.+|.||.+++
T Consensus       196 ~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~q  275 (279)
T 2xhe_B          196 IFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQ  275 (279)
T ss_dssp             --------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            01111122233445689999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCc
Q 024864          236 SSNR  239 (261)
Q Consensus       236 ~~~r  239 (261)
                      +++|
T Consensus       276 k~~R  279 (279)
T 2xhe_B          276 ESAR  279 (279)
T ss_dssp             ----
T ss_pred             HccC
Confidence            8775
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 4e-09
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 20/196 (10%), Positives = 57/196 (29%), Gaps = 7/196 (3%)

Query: 10  VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGAT 69
           V      + I  D+   +  ++ + +L    + E N  Q   +  +   D+  ++     
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSL--DNFVAQATDLQ 62

Query: 70  KELQDVLTTRTENIKAHESRKQIFS--ANALRDSPFRQHAQPVTEPPPWSSPVNASESSQ 127
            +L++ + +   +     +++                     + +          ++   
Sbjct: 63  FKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLI---QDYRIVDSNYKEENKEQAKRQY 119

Query: 128 PSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTIT 187
               P                    S  +  +  +          Q+R   L  +E ++ 
Sbjct: 120 MIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMA 179

Query: 188 ELGGIFTHLATMVAQQ 203
           EL  +F  +  +V +Q
Sbjct: 180 ELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.44
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 96.87
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=7.2e-14  Score=114.70  Aligned_cols=147  Identities=13%  Similarity=0.124  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 024864           11 EIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK   90 (261)
Q Consensus        11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~Rr   90 (261)
                      +|+.++..|+..+..|...+..++..           .....+..+.+..|+.+|.+++..|+.++..|.+.+|.+..|.
T Consensus        50 ~i~~~~~~~~~~~~~~k~~~~~~~~~-----------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~  118 (196)
T d1fioa_          50 SLDNFVAQATDLQFKLKNEIKSAQRD-----------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ  118 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67777777777777777777766542           2234677899999999999999999999999999999998888


Q ss_pred             hhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhhhhH
Q 024864           91 QIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQEN  170 (261)
Q Consensus        91 ~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~q~q~~~~~~~  170 (261)
                      ..+..+.... +...                  ...       + .+++.+.+.         .........+.......
T Consensus       119 ~~~~~~~~~~-~~~~------------------~~~-------~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~  162 (196)
T d1fioa_         119 YMIIQPEATE-DEVE------------------AAI-------S-DVGGQQIFS---------QALLNANRRGEAKTALA  162 (196)
T ss_dssp             HHHHCTTCCH-HHHH------------------HHT-------S-HHHHHHHHH---------HHTC------CHHHHHH
T ss_pred             hhccCCCccc-hhhh------------------Hhh-------c-cccchHHHH---------HHHHHHHHHHHHHHHHH
Confidence            6665432110 0000                  000       0 000000000         00000011112234578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864          171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQG  204 (261)
Q Consensus       171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qg  204 (261)
                      ++++|+++|.+||++|.||++||+|||+||++|.
T Consensus       163 ~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         163 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            8999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure