Citrus Sinensis ID: 024884

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVYDGNAAQAKKSNDILKDQSSQEE
Secondary Structure (PSIPRED)
ccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
macealklepikHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIiygpgvkgqslkpeiwTLKEGQLTSIIRKYKKKISAVDHGQQRTlslakfdesktrqvDDAATMARKKIcvgdfttwdqgmdsfSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAAsrkldhdhsndakslvnsqpgyevsqklpsdssfmeiqcggesggtipftplqrqinwnssltmspassgvydgnaaqakksndilkdqssqee
Flexible Loop (DISEMBL)
macealklepikhekarlatfkkrkNSLLKKAYEFATLCDVEVCIIIYGPgvkgqslkpeIWTLKEGQLTSIIRKYKKkisavdhgqqrtlslakfdesktrqvddaatmarKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLnmikgdqnlkNKAASRKLDHDHSNDakslvnsqpgyevSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVYDGNAAQAkksndilkdqssqee
Low Complexity Region (SEG)
MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVYDGNAAQAKKSNDILKDQSSQEE
Disordered region (IsUnstruct)
******************ATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDH***********************TMARKKICVGDFTTWDQGMDS************************************************************************************IPFTPL***IN*************************************
Disordered Region (DISOPRED)
MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKY*********************************************TWDQGMDSFSEDQLKMILSTMDDKLKAADRKL************************************************************************************************************
Disordered Region (DISEMBL)
MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLK**************DAKSLVNSQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVYDGNAAQ****************
Disordered Region (DISPRO)
***EALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLK*************************YEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPAS**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVYDGNAAQAKKSNDILKDQSSQEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
O82743	219	Agamous-like MADS-box pro	no	no	0.544	0.648	0.244	1e-09
Q7XJK5	320	Agamous-like MADS-box pro	no	no	0.222	0.181	0.419	9e-08
Q38838	221	Agamous-like MADS-box pro	no	no	0.486	0.574	0.253	5e-07
Q01540	252	Floral homeotic protein A	N/A	no	0.264	0.273	0.355	5e-07
Q7XJK6	366	Agamous-like MADS-box pro	no	no	0.222	0.158	0.403	5e-07
P17839	252	Floral homeotic protein A	no	no	0.264	0.273	0.355	7e-07
Q40704	236	MADS-box transcription fa	yes	no	0.409	0.453	0.299	1e-06
Q38836	230	Agamous-like MADS-box pro	no	no	0.264	0.3	0.355	1e-06
Q40872	242	Floral homeotic protein A	N/A	no	0.632	0.681	0.25	1e-06
P0C5B2	233	MADS-box transcription fa	yes	no	0.168	0.188	0.477	2e-06

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 89/180 (49%), Gaps = 38/180 (21%)

Query: 7   KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKE 66
           +++ I++  +R  TF KR+N LLKKA+E + LCD EV ++I+ P       + +++    
Sbjct: 7   EMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSP-------RSKLYEFSS 59

Query: 67  GQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKI---CVGDFTTW 123
             + + I +Y+++I  + +  +R           ++Q  D  +   KKI    +      
Sbjct: 60  SSIAATIERYQRRIKEIGNNHKRN--------DNSQQARDETSGLTKKIEQLEISKRKLL 111

Query: 124 DQGMDSFSEDQLKMILSTMD------------------DKLKAADRKLNMIKGDQNLKNK 165
            +G+D+ S ++L+ + + +D                  +KLKA +R  N++K +++LK K
Sbjct: 112 GEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEER--NLVKENKDLKEK 169

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK5|AGL90_ARATH Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          +KL  I +E++R  +F KRKN + KK +E +TLC V+ C +IY P +      PE W  +
Sbjct: 4  VKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIP----VPESWPSR 59

Query: 66 EG 67
          EG
Sbjct: 60 EG 61

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 15/142 (10%)

Query: 7   KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKE 66
           +++ I++  +R  TF KR+N LLKKA+E + LCD EV +II+ P  K             
Sbjct: 7   EMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS------S 60

Query: 67  GQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARK--KICVGDFTTWD 124
             +   + +Y+K+I  +    +R       +++  +  D+   +ARK   + +       
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKR-------NDNSQQSKDETYGLARKIEHLEISTRKMMG 113

Query: 125 QGMDSFSEDQLKMILSTMDDKL 146
           +G+D+ S ++L+ + + +D  L
Sbjct: 114 EGLDASSIEELQQLENQLDRSL 135

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          ++++ I++   R  TF KR+N LLKKAYE + LCD EV +I++       S +  ++   
Sbjct: 22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-------SSRGRLYEYS 74

Query: 66 EGQLTSIIRKYKKKIS 81
             +   I +YKK IS
Sbjct: 75 NNSVKGTIERYKKAIS 90

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          +KL  I +E++R  +F KRK+ + KK +E +TLC V+ C +IY P +      PE W  +
Sbjct: 4  VKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIP----VPESWPSR 59

Query: 66 EG 67
          EG
Sbjct: 60 EG 61

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          ++++ I++   R  TF KR+N LLKKAYE + LCD EV +I++       S +  ++   
Sbjct: 22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-------SSRGRLYEYS 74

Query: 66 EGQLTSIIRKYKKKIS 81
             +   I +YKK IS
Sbjct: 75 NNSVKGTIERYKKAIS 90

Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms an heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
           ++++ I++   R  TF KR+N LLKKAYE + LCD EV +I++       S +  ++   
Sbjct: 6   IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-------SSRGRLYEYA 58

Query: 66  EGQLTSIIRKYKKKIS-AVDHGQQRTLSLAKFDE--SKTRQVDDAATMARKKICVGD 119
              + S + +YKK  S   + G    ++   + +  SK RQ   +   A  +  VGD
Sbjct: 59  NNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGD 115

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          ++++ I++   R  TF KR+N LLKKAYE + LCD EV +I++       S +  ++   
Sbjct: 6  IEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-------STRGRLYEYA 58

Query: 66 EGQLTSIIRKYKKKIS 81
             + S I +YKK  S
Sbjct: 59 NNNIRSTIERYKKACS 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 19/184 (10%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
           ++++ I++   R  TF KR+N LLKKAYE + LCD EV +I++       S +  ++   
Sbjct: 22  IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-------STRGRLYEYA 74

Query: 66  EGQLTSIIRKYKKKISAVDHGQQRTLSLAKF---DESKTRQVDDAATMARKKI---CVGD 119
              +   I +YKK  +   +    + + A+F   + SK RQ   +     + +    +G 
Sbjct: 75  NNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGS 134

Query: 120 FTTWD-QGMDSFSEDQLKMILSTMDDKLKAA-----DRKLNMIKGDQNLKNKAASRKLDH 173
            T  D +G+++  E  +  I S  ++ L A       +++++   +Q L+ K A  +   
Sbjct: 135 LTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQ 194

Query: 174 DHSN 177
            H N
Sbjct: 195 QHMN 198

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 7  KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGP 50
          +L+ I++  +R  TF KR+N LLKKA+E + LCD EV +I++ P
Sbjct: 7  ELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSP 50

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255536889	386	conserved hypothetical protein [Ricinus	0.593	0.401	0.355	6e-22
224122246	390	predicted protein [Populus trichocarpa]	0.593	0.397	0.339	2e-20
357495775	315	MADS-box transcription factor [Medicago	0.850	0.704	0.297	8e-20
224065525	406	predicted protein [Populus trichocarpa]	0.593	0.381	0.339	9e-20
357495777	347	Agamous-like MADS-box protein AGL36 [Med	0.819	0.616	0.270	6e-17
224060257	358	predicted protein [Populus trichocarpa]	0.597	0.435	0.319	1e-16
357444935	386	MADS-box transcription factor [Medicago	0.578	0.391	0.309	2e-16
297793427	293	MADS-box family protein [Arabidopsis lyr	0.865	0.771	0.288	2e-16
15237775	294	protein agamous-like 82 [Arabidopsis tha	0.551	0.489	0.350	3e-16
255546493	338	mads box protein, putative [Ricinus comm	0.574	0.443	0.292	6e-16

>gi|255536889|ref|XP_002509511.1| conserved hypothetical protein [Ricinus communis] gi|223549410|gb|EEF50898.1| conserved hypothetical protein [Ricinus communis]

 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 8/163 (4%)

Query: 1   MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKP- 59
           M    +K+E I+ E  R+ T++KRK SL+KK  EF+ LC VE C+II+ P  K Q +K  
Sbjct: 1   MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHKDQPVKKL 60

Query: 60  -EIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG 118
             +W     +  SII KYKK        Q R   ++ +   K +++D   +  +K++   
Sbjct: 61  DTVWPPNSDEAKSIINKYKKT------DQARCYLVSHYFLDKKKKLDVEISKLQKQVYEA 114

Query: 119 DFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQN 161
            + +WD  +D+FSED+L+++L+ ++ KL+ AD+KLN+ + +QN
Sbjct: 115 IYPSWDIHLDNFSEDRLRVLLTRLESKLQVADQKLNLFQDNQN 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122246|ref|XP_002318787.1| predicted protein [Populus trichocarpa] gi|222859460|gb|EEE97007.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 7/162 (4%)

Query: 1   MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK--GQSLK 58
           M  + +K+E I+ EK+R+ TF+KRK  LLKKA EF+ LC V+ C+II+GP  K   Q + 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKQKDDHQPVA 60

Query: 59  PEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG 118
           PE W     ++  II +YK          +R   ++ +   K +Q+D       K+I   
Sbjct: 61  PETWPPNSEEVRCIINRYKGSDQP-----RRCYQVSDYFVDKKKQIDSELARLHKQIIKA 115

Query: 119 DFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQ 160
            +  WD  ++S   DQL++++  +D K+  AD+KL     +Q
Sbjct: 116 KYPAWDDRLNSLYADQLRVLVGHLDAKIDLADKKLGSFNANQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495775|ref|XP_003618176.1| MADS-box transcription factor [Medicago truncatula] gi|355493191|gb|AES74394.1| MADS-box transcription factor [Medicago truncatula]

 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS-LKPEIWTL 64
           + +E I+ E++R  T +KRK+ L+KKA EF+ LCDV+VC+I+Y P ++GQ  ++PE W  
Sbjct: 6   ISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYIEPETWPK 65

Query: 65  KEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWD 124
            + ++  +++KY +  + +D  + +T  + ++ + + ++V+      RK+     + TWD
Sbjct: 66  DKREVQRVLQKYYE--TTIDR-RPKTYDVQEYFKERMKKVELEIYKVRKERLKMKYPTWD 122

Query: 125 QGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVN 184
           +  +SF  +QL+  +  +D KL A D+K+NM K +    N   S      +S    +L++
Sbjct: 123 ESYNSFGNEQLRSFVRFLDSKLDACDQKMNMRKDESYKVNNLISSPYLTSNSGTNFNLMH 182

Query: 185 SQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVY 239
           +     +SQ +   S  M I C     G   F P++   +   SL +S A S  Y
Sbjct: 183 TN----ISQ-VKIYSPLMNI-CDKNPLG---FWPIRLGQSSQHSLMVSSAQSSYY 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065525|ref|XP_002301840.1| predicted protein [Populus trichocarpa] gi|222843566|gb|EEE81113.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 7/162 (4%)

Query: 1   MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK--GQSLK 58
           M  + +K+E I+ EK+R+ TF+KRK  LLKKA EF+ LC V+ C+II+GP  K   Q + 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKEKDDHQPVA 60

Query: 59  PEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG 118
           PE W     ++  II +YK          +R   ++ +   K +Q+D       K+I   
Sbjct: 61  PETWPPSSEEVRCIINRYKGSDQP-----RRCYQVSDYFADKKKQIDSELARLHKQIIKA 115

Query: 119 DFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQ 160
            +  WD  ++    DQL++I+  +D K+  AD+KL     +Q
Sbjct: 116 KYPAWDDRLNRLYADQLRVIVGHLDAKIDLADKKLGSFNVNQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495777|ref|XP_003618177.1| Agamous-like MADS-box protein AGL36 [Medicago truncatula] gi|355493192|gb|AES74395.1| Agamous-like MADS-box protein AGL36 [Medicago truncatula]

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 120/233 (51%), Gaps = 19/233 (8%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL-KPEIWTL 64
           + +E I+ EK+R  + + RK  L+ K  E + LCDV+ C+I+Y P  +GQ   +PE W  
Sbjct: 6   VSVEFIQKEKSRKISLQTRKIGLMTKVEELSILCDVDACVILYAPNFEGQGYDEPETWPK 65

Query: 65  KEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWD 124
              +L  I+++Y    + +D  + +T ++ ++ + + ++V+   +  RK+     + TWD
Sbjct: 66  DTKELQRILQRYYN--TTIDR-RLKTYNVQEYFKERMKKVEFEISKVRKEKFKMKYQTWD 122

Query: 125 QGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVN 184
           +  +   ++QL++  S +D KL A + K+NM+KGD  L+ K+ + + +   + ++   ++
Sbjct: 123 ESFNFLEDEQLRLFASILDFKLDACNLKMNMLKGD--LRGKSIALETNKIDNLNSSPYLD 180

Query: 185 SQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSG 237
           S P           SS+  +     S   I + PL   IN  + L   P  SG
Sbjct: 181 SNP-----------SSYFNLPQNNMSQAHI-YPPLM-NINDKNPLGFWPLISG 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060257|ref|XP_002300109.1| predicted protein [Populus trichocarpa] gi|222847367|gb|EEE84914.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)

Query: 8   LEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQ-SLKPEIWTLKE 66
           +E I++EK+R+ TF+KRK +LLKK  +F+ LC V+ C+II+GP    Q +   E W    
Sbjct: 1   MESIRNEKSRMLTFRKRKTTLLKKVSDFSILCGVDACVIIFGPNQNDQPAATAETWPSNS 60

Query: 67  GQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQG 126
            ++  II +YK    A D   ++    + +  +K +++D       +++    +  WD  
Sbjct: 61  DEVRCIINRYK----ACDQP-RKCYRGSDYFTAKKKKIDAEFAKLHRQVLKAKYPAWDDR 115

Query: 127 MDSFSEDQLKMILSTMDDKL-KAADRKLNMIKGDQNLKNKAAS 168
           + S S DQL+++L  +D KL + AD+ L++ K  Q + +  AS
Sbjct: 116 LSSLSSDQLRVLLGQLDTKLIETADKTLSIFKEYQYVMDNDAS 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444935|ref|XP_003592745.1| MADS-box transcription factor [Medicago truncatula] gi|355481793|gb|AES62996.1| MADS-box transcription factor [Medicago truncatula]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL-KPEIWTL 64
           + +E I+ EK+R +TF+KRK+ L+KK  EF+ LCDV+VC+++Y P   G+   +PE W  
Sbjct: 6   ISMELIQKEKSRKSTFQKRKDGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEPETWPK 65

Query: 65  KEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWD 124
            +  +  I++KY    S     + +   + ++ + + R+++   T  RK+     + TW+
Sbjct: 66  DKRAVERILQKYYNTTS---DRRPKIYDVQEYFKERIRKLEFEITKVRKEKLKMMYPTWN 122

Query: 125 QGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGD 159
           +  +S   +QL +  S ++ KL A ++K +M+K D
Sbjct: 123 ESFNSLGAEQLILFASKLEAKLDACNQKKHMLKED 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793427|ref|XP_002864598.1| MADS-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297310433|gb|EFH40857.1| MADS-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 20/246 (8%)

Query: 1   MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL--K 58
           M  + + L+ I ++K R+ T+KKRK SL KKA EF+TLC V+ C+I+YGP      +  +
Sbjct: 1   MPPKKVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVQTCLIVYGPTKATDEVVPE 60

Query: 59  PEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG 118
           PEIW   E  +  IIRKYK  +S     +    +    D  KT +V+    + R+     
Sbjct: 61  PEIWPRDETNVRDIIRKYKDTVSTSCRKETNVETFVN-DLGKTNEVETKKRVKRE----N 115

Query: 119 DFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRK--LNMIKGDQNLKNKAASRKLDHDHS 176
            + +W++ +D  S +QL  I   +D KL  A  +  L+M +      +    +     H 
Sbjct: 116 KYCSWEEKLDKCSREQLHEIFCAVDKKLHEAVMRQDLSMYRVHHQAMDTPIPQNFMDQHF 175

Query: 177 NDAKSLVNSQPGYEVSQKLPSDSSFMEIQCGGESGGTIPFTPLQRQINW-----NSSLTM 231
                  + QP +   Q  P++ + M         G I   P   + NW       SL M
Sbjct: 176 --MPQYFHEQPQF---QGFPNNFNNMGFSLISPHDGQIQMDPNLME-NWRDLALTQSLMM 229

Query: 232 SPASSG 237
           S  ++G
Sbjct: 230 SKGNAG 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237775|ref|NP_200697.1| protein agamous-like 82 [Arabidopsis thaliana] gi|9759222|dbj|BAB09634.1| unnamed protein product [Arabidopsis thaliana] gi|225879132|dbj|BAH30636.1| hypothetical protein [Arabidopsis thaliana] gi|332009731|gb|AED97114.1| protein agamous-like 82 [Arabidopsis thaliana]

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 1   MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL--K 58
           M  + + L+ I ++K R+ T+KKRK SL KKA EF+TLC VE C+I+YGP      +  +
Sbjct: 1   MVPKVVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISE 60

Query: 59  PEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG 118
           PEIW   E ++ +IIRKYK  +S     +    +    D  K  +V     + R+     
Sbjct: 61  PEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVN-DVGKGNEVVTKKRVKRE----N 115

Query: 119 DFTTWDQGMDSFSEDQLKMILSTMDDKLKAA 149
            +++W++ +D  S +QL  I   +D KL  A
Sbjct: 116 KYSSWEEKLDKCSREQLHGIFCAVDSKLNEA 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546493|ref|XP_002514306.1| mads box protein, putative [Ricinus communis] gi|223546762|gb|EEF48260.1| mads box protein, putative [Ricinus communis]

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 4/154 (2%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
           L +E I +EK+R+ T+ KRK  L KK  EF  LCDV+ CIII+ P    +S   E W   
Sbjct: 6   LNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFSPKFNNRSFDIETWPSN 65

Query: 66  EGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQ 125
             ++  II +Y+ +    D+ ++R   L+ F  ++ +++D+     RK      +  WD 
Sbjct: 66  RYEMRRIINRYRSQ----DNDRKRNQDLSHFFIARKKKIDEDIAKMRKAHMEAKYPAWDN 121

Query: 126 GMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGD 159
            ++     +L ++ S +  K++ A  ++  I+G+
Sbjct: 122 RINLLQLHELSVLASVLQSKIEVATARVMKIRGE 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2154588	294	AGL82 "AGAMOUS-like 82" [Arabi	0.547	0.486	0.355	3.1e-19
TAIR|locus:2162137	277	AT5G55690 [Arabidopsis thalian	0.544	0.512	0.311	8.6e-17
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.689	0.821	0.258	6.2e-12
TAIR|locus:505006709	210	AGL42 "AGAMOUS-like 42" [Arabi	0.674	0.838	0.281	9.6e-10
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.708	0.837	0.236	2e-09
TAIR|locus:2146774	218	AT5G26630 [Arabidopsis thalian	0.570	0.683	0.284	1.3e-08
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.636	0.932	0.261	2.4e-08
TAIR|locus:2152511	321	AGL80 "AGAMOUS-like 80" [Arabi	0.743	0.604	0.255	2.5e-08
TAIR|locus:2054543	329	AGL46 "AGAMOUS-like 46" [Arabi	0.432	0.343	0.291	8.1e-08
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.567	0.691	0.254	4.7e-07

TAIR|locus:2154588 AGL82 "AGAMOUS-like 82" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 54/152 (35%), Positives = 83/152 (54%)

Query:     1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL--- 57
             M  + + L+ I ++K R+ T+KKRK SL KKA EF+TLC VE C+I+YGP  K   +   
Sbjct:     1 MVPKVVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGP-TKATDVVIS 59

Query:    58 KPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICV 117
             +PEIW   E ++ +IIRKYK  +S     +    +    D  K  +V     + R+    
Sbjct:    60 EPEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVN-DVGKGNEVVTKKRVKREN--- 115

Query:   118 GDFTTWDQGMDSFSEDQLKMILSTMDDKLKAA 149
               +++W++ +D  S +QL  I   +D KL  A
Sbjct:   116 -KYSSWEEKLDKCSREQLHGIFCAVDSKLNEA 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2162137 AT5G55690 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 48/154 (31%), Positives = 84/154 (54%)

Query:     1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL--K 58
             M  + +K+  I +EK R+ T+KKRK  L KKA EF+TLC V+ C+I+YGP   G  +  +
Sbjct:     1 MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query:    59 PEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG 118
             PE+W     ++  I+ KY+   S+      +T ++ +  E    +V+   T+A K     
Sbjct:    61 PELWPKDGSKVREILTKYRDTASS---SCTKTYTVQECLEKNNTKVEKP-TIATK----- 111

Query:   119 DFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRK 152
              + TWD+ +D  S + L  +   +++K++ A  +
Sbjct:   112 -YPTWDKKLDQCSLNDLYAVFMAVENKIQEATNR 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 53/205 (25%), Positives = 100/205 (48%)

Query:     7 KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKE 66
             +++ I++  +R  TF KR+N LLKKA+E + LCD EV ++I+ P       + +++    
Sbjct:     7 EMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSP-------RSKLYEFSS 59

Query:    67 GQLTSIIRKYKKKISAVDHGQQRT-LSLAKFDESK--TRQVDDAATMARKKI------C- 116
               + + I +Y+++I  + +  +R   S    DE+   T++++      RK +      C 
Sbjct:    60 SSIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query:   117 VGDFTTWDQGMD-SFSEDQLK--MILSTMDDKLKAADRKLNMIKGDQNLKNK---AASRK 170
             + +    +  +D S S  + K   +L    +KLKA +R  N++K +++LK K     +  
Sbjct:   120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEER--NLVKENKDLKEKWLGMGTAT 177

Query:   171 LDHDHSNDAKSLVNSQPGYEVSQKL 195
             +    S  + S VN     EV   L
Sbjct:   178 IASSQSTLSSSEVNIDDNMEVETGL 202

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:505006709 AGL42 "AGAMOUS-like 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.6e-10, P = 9.6e-10
 Identities = 54/192 (28%), Positives = 96/192 (50%)

Query:     6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
             ++++ I++  +R  TF KR+N LLKKAYE + LCD ++ +II+    +G+  +   ++  
Sbjct:     6 IEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQ--RGRLYE---FSSS 60

Query:    66 EGQLT-SIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWD 124
             + Q T    RKY K     +H  Q  L   K + S      +     ++K+ +G      
Sbjct:    61 DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKL-LG------ 113

Query:   125 QGMDSFSEDQLKMILSTMDDKL-KAADRKLNMIKGDQNLKNKAASRKLDHDHSN-DAKSL 182
             QG+ S S ++L+ I S +   L K  +RK  + K +Q  K KA  ++L  ++     K++
Sbjct:   114 QGIASCSLEELQEIDSQLQRSLGKVRERKAQLFK-EQLEKLKAKEKQLLEENVKLHQKNV 172

Query:   183 VNSQPGYEVSQK 194
             +N   G    Q+
Sbjct:   173 INPWRGSSTDQQ 184

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009838 "abscission" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0080187 "floral organ senescence" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 49/207 (23%), Positives = 100/207 (48%)

Query:     7 KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKE 66
             +++ I++  +R  TF KR+N LLKKA+E + LCD EV +II+ P  +G+  +        
Sbjct:     7 EMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSP--RGKLYEFS----SS 60

Query:    67 GQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARK--KICVGDFTTWD 124
               +   + +Y+K+I  +    +R       D S+  + D+   +ARK   + +       
Sbjct:    61 SSIPKTVERYQKRIQDLGSNHKRN------DNSQQSK-DETYGLARKIEHLEISTRKMMG 113

Query:   125 QGMDSFSEDQLKMILSTMDDKL-KAADRKLNMIKGD-QNLKNK-----AASRKLDHDHSN 177
             +G+D+ S ++L+ + + +D  L K   +K  +++ + + LK K     A ++ L      
Sbjct:   114 EGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEM 173

Query:   178 DAKSLVNSQPGYEVSQKLPSDSSFMEI 204
               + ++        + +L  D + ME+
Sbjct:   174 QGRGIIGRISSSSSTSELDIDDNEMEV 200

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2146774 AT5G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:     1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPE 60
             M  + +K+  I++E AR +TFKKRK  LLKKA E   LC V +  ++  P      L PE
Sbjct:     1 MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSP----YELNPE 56

Query:    61 IWTLKEG--QLTS------IIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMAR 112
             +W  +E   Q+ S      ++ K KK ++     QQR   + K  ES  +   +   +  
Sbjct:    57 VWPSREAANQVVSQWKTMSVMDKTKKMVNQETFLQQR---ITKATESWKKLRKENKELEM 113

Query:   113 KKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIK 157
             K I   D  +    + S  + +L+     ++ +LK  +R++ ++K
Sbjct:   114 KNIMF-DCLSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILK 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 46/176 (26%), Positives = 83/176 (47%)

Query:     1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSL-KP 59
             M    +K+E ++    +  TF KR+  L KKA E ATLC+ EV I+++ PG K  S  KP
Sbjct:     1 MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query:    60 EIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVG- 118
                 + E +  +   + ++  S    G  R  + A+ ++   ++++     A  +   G 
Sbjct:    61 NFDVIAE-RFKNEFEEEEEGDSCETSGYSRG-NRARQEKKICKRLNSITEEAEAEKKHGE 118

Query:   119 DFTTWDQGMDSFSEDQLKMILSTMD-DKLKAADRKLNMIK-GDQ-NLKNKAASRKL 171
             D   W   ++S  +D+    +  +  ++LK  + K+  I  G Q N+ +  AS  L
Sbjct:   119 DLHKW---LESAEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSL 171

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2152511 AGL80 "AGAMOUS-like 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 55/215 (25%), Positives = 97/215 (45%)

Query:     1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPE 60
             M  + +KL  I ++ +R ATFKKRK  L+KK +E +TLC +  C IIY P        PE
Sbjct:     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSP----YDTNPE 56

Query:    61 IWTLKEG--QLTSIIR------KYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMAR 112
             +W    G  ++ S  R      ++KK +      +QR   +AK  E+  RQ  D+  +  
Sbjct:    57 VWPSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQR---IAKATETLRRQRKDSRELEM 113

Query:   113 KKICVGDFTTWDQGMDSFSED--QLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRK 170
              ++    F      M+ F  +   L  +   ++  LK  +R++ +++       +++S  
Sbjct:   114 TEVM---FQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

Query:   171 LDHDHSN-DAKSLVNSQPGYEVSQKLPSDSSFMEI 204
             +     N    +LV +        ++ S SSF  +
Sbjct:   171 VAASEGNIPMPNLVATTAPTTTIYEVGSSSSFAAV 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2054543 AGL46 "AGAMOUS-like 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 37/127 (29%), Positives = 70/127 (55%)

Query:     1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPE 60
             MA + L L  I +++ R  +FK+R+   LKK  +   LCDV  C ++Y P     +  P+
Sbjct:     1 MARKKLNLTYIFNDRMRKRSFKQRREGFLKKLNDLKVLCDVNACAVVYNPF----NSNPD 56

Query:    61 IWTLKEGQLTSIIRKYK------KKISAVDHGQQRTLSLAKFD-ESKTRQVDDAATMARK 113
             +W  K  ++ +II+K++      KK+ +V+H +   L ++K + +SK   V++  T  ++
Sbjct:    57 VWPSKS-EVNNIIKKFEMLPETQKKVKSVNHEEFLNLYISKVEKQSKKLIVENKETCLKE 115

Query:   114 KI--CVG 118
              +  C+G
Sbjct:   116 VMFKCLG 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 41/161 (25%), Positives = 84/161 (52%)

Query:     7 KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKE 66
             +++ I++  +R  TF KR+N LLKKA+E + LCD EV +II+ P  KG+  +     +++
Sbjct:     7 QMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSP--KGKLYEFASSNMQD 64

Query:    67 GQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQG 126
               +   +R  K ++S     ++    L K++ +   +  +    +++K+ +G+      G
Sbjct:    65 -TIDRYLRHTKDRVSTKPVSEENMQHL-KYEAANMMKKIEQLEASKRKL-LGE------G 115

Query:   127 MDSFSEDQLKMILSTMDDKLKAAD-RKLNMIKGD-QNLKNK 165
             + + S ++L+ I   ++  +K    RK  + K   + LK K
Sbjct:   116 IGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQK 156

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001064 hypothetical protein (390 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-15
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-15
smart00432	59	smart00432, MADS, MADS domain	4e-12
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-11
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	6e-10

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +K++ I+++K R  TF KR+  L KKA E +TLC  EV +I+Y P  K
Sbjct: 5  IKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGK 52

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 67.9 bits (167), Expect = 3e-15
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          ++++ I+++ +R  TF KR+N L KKA E + LCD EV +I++ P  K
Sbjct: 5  IEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGK 52

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          ++++ I+++  R  TF KR+N L KKA+E + LCD EV +I++ P  K
Sbjct: 5  IEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGK 52

Length = 59

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 9  EPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGP 50
          + I+++  R  TF KR+N + KKA+E + LCD EV +II+  
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSS 42

Length = 51

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 54.1 bits (131), Expect = 6e-10
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 11 IKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          I++   R  TF KR+N LLKKA+E + LCD EV +II+    K
Sbjct: 10 IENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGK 52

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.95
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.94
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.9
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.7
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.31
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.22
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	89.39

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=5.5e-35  Score=249.43  Aligned_cols=154  Identities=20%  Similarity=0.334  Sum_probs=111.1

Q ss_pred             CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhc
Q 024884            1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKI   80 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~   80 (261)
                      |||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+    +||.++ +|..|++||....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~----~~~~~~-~~~~v~~~~~~~~   75 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYE----FGSSDE-SVDAVVDRFLNLT   75 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccc----cCCcch-hHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999987    777544 3999999999876


Q ss_pred             ccccccchhhhhHHHHHH-----HHHHH----------hHHHHHHHHHhhhcc------cccccCCCCCCCCH-HHHHHH
Q 024884           81 SAVDHGQQRTLSLAKFDE-----SKTRQ----------VDDAATMARKKICVG------DFTTWDQGMDSFSE-DQLKMI  138 (261)
Q Consensus        81 ~~~~~~~~k~~~~q~~l~-----~~~~k----------le~~~~kLrkei~~~------~~~~~GedL~~Ls~-eEL~~L  138 (261)
                      ..  ....+..+...++.     .....          .......++......      .....|+++.+++. .+|..+
T Consensus        76 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~  153 (195)
T KOG0014|consen   76 EP--SRKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSL  153 (195)
T ss_pred             hh--hhcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcch
Confidence            65  11111111111111     00000          001111111111110      12467899999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhchh
Q 024884          139 LSTMDDKLKAADRKLNMIKGDQN  161 (261)
Q Consensus       139 e~~Le~~Lk~IR~r~~~l~~~q~  161 (261)
                      +.+|+..+..+|........++.
T Consensus       154 ~~~l~~~~~~~~~~~~~~~~~~~  176 (195)
T KOG0014|consen  154 ESQLESSLHNSRSSKSKPLSDSN  176 (195)
T ss_pred             hhHHHHhhcCCCCCCCcCCcchh
Confidence            99999999998877666654443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=2.1e-31  Score=195.28  Aligned_cols=74  Identities=34%  Similarity=0.566  Sum_probs=68.5

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~   81 (261)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+       |+++++++||+||+..++
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-------f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-------FSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-------ecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999876       223468999999999876


Q ss_pred             c
Q 024884           82 A   82 (261)
Q Consensus        82 ~   82 (261)
                      .
T Consensus        74 ~   74 (77)
T cd00265          74 S   74 (77)
T ss_pred             c
Confidence            5

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.2e-29  Score=188.62  Aligned_cols=75  Identities=33%  Similarity=0.606  Sum_probs=69.4

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~   81 (261)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|+.+    .+||++.  +..+|+||...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~----~~~~~~~--~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY----VFWPSSE--VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc----eecCcHH--HHHHHHHHhhcCH
Confidence            899999999999999999999999999999999999999999999999999765    4887643  9999999998876


Q ss_pred             c
Q 024884           82 A   82 (261)
Q Consensus        82 ~   82 (261)
                      .
T Consensus        75 ~   75 (83)
T cd00266          75 L   75 (83)
T ss_pred             h
Confidence            5

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.95  E-value=1.8e-28  Score=170.04  Aligned_cols=55  Identities=36%  Similarity=0.627  Sum_probs=53.8

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS   56 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e   56 (261)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|.
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~   55 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE   55 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeee
Confidence            8999999999999999999999999999999999999999999999999998876

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.94  E-value=5.8e-28  Score=167.65  Aligned_cols=55  Identities=36%  Similarity=0.641  Sum_probs=53.5

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS   56 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e   56 (261)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~   55 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYE   55 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccc
Confidence            7999999999999999999999999999999999999999999999999998765

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.90  E-value=6.4e-26  Score=152.45  Aligned_cols=48  Identities=42%  Similarity=0.681  Sum_probs=43.6

Q ss_pred             eeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC
Q 024884            9 EPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS   56 (261)
Q Consensus         9 k~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e   56 (261)
                      |+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|.
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~   48 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT   48 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE
Confidence            689999999999999999999999999999999999999999999875

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.70  E-value=3.6e-18  Score=150.65  Aligned_cols=81  Identities=23%  Similarity=0.347  Sum_probs=69.2

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC-CCCcccccCC-chHHHHHHHHhhh
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS-LKPEIWTLKE-GQLTSIIRKYKKK   79 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e-~~P~~wp~~~-~sv~~vleRY~~~   79 (261)
                      ||+||+|++|+|+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|. ..|.+=|--. ..=+++|.-..+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999998 6665544322 1237788777776


Q ss_pred             ccc
Q 024884           80 ISA   82 (261)
Q Consensus        80 ~~~   82 (261)
                      +..
T Consensus       143 pd~  145 (338)
T KOG0015|consen  143 PDT  145 (338)
T ss_pred             CCC
Confidence            654

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.31  E-value=9.2e-13  Score=121.47  Aligned_cols=59  Identities=25%  Similarity=0.403  Sum_probs=56.8

Q ss_pred             CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC-CCC
Q 024884            1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS-LKP   59 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e-~~P   59 (261)
                      |||+||.|..|+|+.+|.|||+||+.||+|||+||+||.+.+|.++|.|.+|++|. +.|
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp  140 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP  140 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence            78999999999999999999999999999999999999999999999999999988 555

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.22  E-value=7.8e-11  Score=90.49  Aligned_cols=97  Identities=14%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             HhhhcccccccchhhhhHHHHHHHHHHHhHHHHHHHHHhhhcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 024884           76 YKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNM  155 (261)
Q Consensus        76 Y~~~~~~~~~~~~k~~~~q~~l~~~~~kle~~~~kLrkei~~~~~~~~GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~  155 (261)
                      |++.++. ..|......+...+..+    ..++..|+...+    ++.|++|++|+++||.+||.+|+.+|..||.|+..
T Consensus         1 Y~~~~~~-~~~~~~~e~~~~e~~~L----~~~~~~L~~~~R----~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~   71 (100)
T PF01486_consen    1 YQKQSGT-DLWDSQHEELQQEIAKL----RKENESLQKELR----HLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQ   71 (100)
T ss_pred             CCcccCC-CCCHHHHHHHHHHHHHH----HHHHHHHHHHHh----ccccccccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence            4444443 33444444444444444    444555554444    38899999999999999999999999999999999


Q ss_pred             hhhchhhHHHHHHhhhhhhhhhhhhh
Q 024884          156 IKGDQNLKNKAASRKLDHDHSNDAKS  181 (261)
Q Consensus       156 l~~~q~~~~k~~~~~l~e~~~~~~~~  181 (261)
                      ++.++....+.+++.+.+.|..|...
T Consensus        72 ~l~~~i~~l~~ke~~l~~en~~L~~~   97 (100)
T PF01486_consen   72 LLMEQIEELKKKERELEEENNQLRQK   97 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988776554

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=89.39  E-value=0.89  Score=31.45  Aligned_cols=33  Identities=6%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024884          122 TWDQGMDSFSEDQLKMILSTMDDKLKAADRKLN  154 (261)
Q Consensus       122 ~~GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~  154 (261)
                      ..|+||+.||++||..-...|+.-+.+++..+.
T Consensus        13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~   45 (59)
T PF06698_consen   13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIA   45 (59)
T ss_pred             ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999988875443

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-05
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-05
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-05
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-05
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		4e-05
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-04

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +++  I  E+ R  TF KRK  L+KKAYE + LCD E+ +II+    K
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +++  I  E+ R  TF KRK  L+KKAYE + LCD E+ +II+    K
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +++  I  E+ R  TF KRK  L+KKAYE + LCD E+ +II+    K
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1  MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPG 51
          M  + +++  I  ++ R  TF KRK  L+KKAYE + LCD E+ +II+   
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSA 51

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPG 51
          +++  I  ++ R  TF KRK  L+KKAYE + LCD E+ +II+   
Sbjct: 5  IQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSA 50

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +++  I  E+ R  TF KRK  L+KKAYE + L D E+ +II+    K
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNK 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	3e-11
1egw_A	77	MADS box transcription enhancer factor 2, polypept	7e-11
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-10
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-10
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +++  I  E+ R  TF KRK  L+KKAYE + LCD E+ +II+    K
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +++  I  E+ R  TF KRK  L+KKAYE + LCD E+ +II+    K
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          +K+E I ++  R  TF KRK  ++KKAYE +TL   +V +++             ++T  
Sbjct: 15 IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH-------VYTFA 67

Query: 66 EGQLTSIIRKYKKK 79
            +L  +I     K
Sbjct: 68 TRKLQPMITSETGK 81

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          +K+E I ++  R  TF KRK  ++KKAYE +TL   +V +++             ++T  
Sbjct: 14 IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH-------VYTFA 66

Query: 66 EGQLTSIIRKYKKK 79
            +L  +I     K
Sbjct: 67 TRKLQPMITSETGK 80

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 13/48 (27%), Positives = 29/48 (60%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          ++++ I+++  R  TF KRK+ ++KKA+E + L   +V +++      
Sbjct: 21 IEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 55/217 (25%)

Query: 6   LKLEPIKHEKARLATFKKRKNSLL-------KKAYE-FATLC-------DVEVCIIIYGP 50
           L++  I+ E  RL   K  +N LL        KA+  F   C         +V   +   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 51  GVKGQSLKPEIWTLKEGQLTSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATM 110
                SL     TL   ++ S++ KY              L     D    R+V      
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKY--------------LDCRPQDLP--REVLTTNPR 328

Query: 111 ARKKI---CVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAAD-----RKLNMIKGDQNL 162
               I         TWD      + D+L  I+ +  + L+ A+      +L++     ++
Sbjct: 329 RLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 163 KNKAASR------------KLDHDHSNDAKSLVNSQP 187
                S              ++  H     SLV  QP
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQP 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 34/294 (11%), Positives = 86/294 (29%), Gaps = 74/294 (25%)

Query: 4   EALKLEP---------IKHEKARLATFK----KRKNSLLKKAYEFATLCDVEVC---III 47
           E L   P         I+   A    +K     +  ++++ +       +       + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 48  YGPGVKGQSLKPE-----IWT-LKEGQLTSIIRKYKKKISAVD-HGQQRTLSLAKFDESK 100
           + P        P      IW  + +  +  ++ K  K  S V+   ++ T+S+       
Sbjct: 381 FPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLEL 435

Query: 101 TRQVDDAATM---------ARKKICVGDFTT--WDQ------G--MDSFSEDQLKMILST 141
             ++++   +           K     D      DQ      G  + +    +   +   
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 142 -------MDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVSQK 194
                  ++ K++      N      N         L          + ++ P YE  + 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNT--------L-QQLKFYKPYICDNDPKYE--RL 544

Query: 195 LPSDSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSPASSGVYDGNAAQAKK 248
           + +   F+  +   E+     +T L R       + +      +++    Q ++
Sbjct: 545 VNAILDFLP-KIE-ENLICSKYTDLLR-------IALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.98
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.97
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=7.3e-37  Score=227.30  Aligned_cols=87  Identities=28%  Similarity=0.487  Sum_probs=74.9

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~   81 (261)
                      ||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+||+|+     |+  +++|..||+||+++++
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-----f~--s~~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YA--STDMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EE--SSCHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-----eC--CCCHHHHHHHHHhcCc
Confidence            8999999999999999999999999999999999999999999999999999987     44  3579999999999887


Q ss_pred             cccccchhhhhHHHHH
Q 024884           82 AVDHGQQRTLSLAKFD   97 (261)
Q Consensus        82 ~~~~~~~k~~~~q~~l   97 (261)
                      .  +.+....++.+++
T Consensus        74 ~--~~~~~~~d~~e~~   87 (90)
T 3p57_A           74 P--HESRTNSDIVEAL   87 (90)
T ss_dssp             C--CCEECHHHHHHHH
T ss_pred             c--cccCChHhHHHHH
Confidence            6  4433333433333

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.2e-36  Score=220.80  Aligned_cols=74  Identities=31%  Similarity=0.556  Sum_probs=67.4

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~   81 (261)
                      ||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+||+|+     |+  +++|+.||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-----~~--s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YA--STDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-----EE--SSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-----CC--CCCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999987     43  4579999999999876


Q ss_pred             c
Q 024884           82 A   82 (261)
Q Consensus        82 ~   82 (261)
                      .
T Consensus        74 ~   74 (77)
T 1egw_A           74 P   74 (77)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.98  E-value=1.8e-34  Score=217.91  Aligned_cols=72  Identities=19%  Similarity=0.360  Sum_probs=66.8

Q ss_pred             CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhh
Q 024884            1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKK   79 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~   79 (261)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+       |+++++..||+||...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-------FSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EECTTTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-------ecCCCHHHHHHHhhCC
Confidence            89999999999999999999999999999999999999999999999999999988       2334788999999764

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.97  E-value=3.6e-34  Score=213.66  Aligned_cols=71  Identities=27%  Similarity=0.381  Sum_probs=65.4

Q ss_pred             CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhh
Q 024884            1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKK   78 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~   78 (261)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+       |++++|..||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-------f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FATRKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-------EECGGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-------ecCCCHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999987       334578899987653

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=1.3e-33  Score=214.63  Aligned_cols=69  Identities=28%  Similarity=0.396  Sum_probs=64.3

Q ss_pred             CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHH
Q 024884            1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKY   76 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY   76 (261)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+       |++++|..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-------EECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-------ecCccHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999987       3345789999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-12
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-12
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-12

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLK 65
          +++  I  E+ R  TF KRK  L+KKAYE + LCD E+ +II+    K       ++   
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK-------LFQYA 57

Query: 66 EGQLTSIIRKYKK 78
             +  ++ KY +
Sbjct: 58 STDMDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          +K+E I ++  R  TF KRK  ++KKAYE +TL   +V +++      
Sbjct: 7  IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH 54

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 13/48 (27%), Positives = 29/48 (60%)

Query: 6  LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
          ++++ I+++  R  TF KRK+ ++KKA+E + L   +V +++      
Sbjct: 7  IEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.97
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.97

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=210.58  Aligned_cols=70  Identities=33%  Similarity=0.609  Sum_probs=65.8

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhh
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKK   78 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~   78 (261)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+     |+  +++++.||+||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~-----f~--s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YA--STDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-----EE--SSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEE-----ee--CCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999876     44  3479999999986

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-34  Score=207.00  Aligned_cols=72  Identities=28%  Similarity=0.390  Sum_probs=67.4

Q ss_pred             CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhh
Q 024884            1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKK   79 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~   79 (261)
                      +||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+       |++++++.||+||+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~-------f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEE-------EECGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEE-------eeCCCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999887       4455899999999764

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-33  Score=206.62  Aligned_cols=73  Identities=19%  Similarity=0.339  Sum_probs=67.6

Q ss_pred             CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884            2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~   81 (261)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+       |++++|+.||+||+....
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~-------f~sp~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-------FSTPKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EECTTTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEe-------ccCCCHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999876       445589999999987644