Citrus Sinensis ID: 024892

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIRDAKIARR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEcccccEEEEHHHHHHHHHHHHHHcccccEEHEEEEEEccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEEEccHHEEEEEEEEcccccEEEcccHHHHHHHHHHHHcccccEEEEEEcEEccEEEccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MASLQQTATLSlqsnlfpsgraasrnplsatipsgprrrgahgirMSATVATSYAIALVDLAKanntlestsaDVEKIEKIFSEKqiheffvnptidiekKREMVDEICkssalqpltgnFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLtgaknvriktvidpslvagftirygkwgskLIDMSVKKQLEEIAAQLDLGDVQLALSTWRrmdirysypglgcstirdakiarr
Flexible Loop (DISEMBL)
MASLQQTATLslqsnlfpsgraasrnplsatipsgprrrgaHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIfsekqiheffvnptidiEKKREMVDEICKSsalqpltgnflnilidakRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQvqkltgaknvriktvidpslvagftirygkwgsKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRrmdirysypglgcstirdakiarr
Low Complexity Region (SEG)
MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIRDAKIARR
Disordered region (IsUnstruct)
*******************************************IRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIR*******
Disordered Region (DISOPRED)
*************************************************VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIRDAKI***
Disordered Region (DISEMBL)
MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIRDAKIARR
Disordered Region (DISPRO)
*****QTA*LSLQSNLFP*********************GAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIRDAKIA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDxxxxxxxxxxxxxxxxxxxxxFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLALSTWRRMDIRYSYPGLGCSTIRDAKIARR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
P32980	248	ATP synthase delta chain,	N/A	no	0.850	0.895	0.575	4e-74
P11402	257	ATP synthase delta chain,	N/A	no	0.823	0.836	0.609	2e-71
Q02758	251	ATP synthase delta chain,	N/A	no	0.888	0.924	0.551	7e-66
Q07300	247	ATP synthase delta chain,	N/A	no	0.750	0.793	0.530	8e-56
Q42687	219	ATP synthase delta chain,	N/A	no	0.743	0.885	0.382	2e-33
Q4G398	180	ATP synthase subunit delt	N/A	no	0.655	0.95	0.329	1e-19
B7KKR5	184	ATP synthase subunit delt	yes	no	0.693	0.983	0.303	1e-19
Q40610	179	ATP synthase subunit delt	N/A	no	0.651	0.949	0.308	8e-19
Q1XDP4	186	ATP synthase subunit delt	N/A	no	0.643	0.903	0.306	1e-18
P35010	177	ATP synthase subunit delt	N/A	no	0.632	0.932	0.323	3e-18

>sp|P32980|ATPD_TOBAC ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1

 Score =  277 bits (709), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/259 (57%), Positives = 185/259 (71%), Gaps = 37/259 (14%)

Query: 1   MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGP------------------------ 36
           MA+LQQT  ++ QS          R+P    I SGP                        
Sbjct: 1   MAALQQTP-ITFQS----------RSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRT 49

Query: 37  --RRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNP 94
             R  GA G +M A+ A SYA AL D+AK+N TLE T+AD+EKIEKI  ++ +  FFV+P
Sbjct: 50  SRRGGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSP 109

Query: 95  TIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMA 154
            +  EKKRE+VDEI  SS++QP   NFLNIL+D KRV+++K+IVKEFE+VYN +T+TE+A
Sbjct: 110 IVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELA 169

Query: 155 VVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVK 214
           VV+SVVKLES+HLAQIAK VQ+LTG+KNVRIKTVID SLVAGFTIRYG  GSKLIDMSVK
Sbjct: 170 VVTSVVKLESQHLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVK 229

Query: 215 KQLEEIAAQLDLGDVQLAL 233
           KQLE+IAAQL++GD+QLA+
Sbjct: 230 KQLEDIAAQLEIGDIQLAV 248

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.
Nicotiana tabacum (taxid: 4097)

>sp|P11402|ATPD_SPIOL ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 172/220 (78%), Gaps = 5/220 (2%)

Query: 19  SGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSA 73
           S   A+ NPL   I +  +     R GA G RM  + A+ YA AL D+A    TLE+T++
Sbjct: 38  SSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNS 97

Query: 74  DVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDV 133
           DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI  +S LQP T NF+NILID++R+++
Sbjct: 98  DVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINL 157

Query: 134 VKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL 193
           VK+I+ EFE+V+NK+T TE+AVV+SVVKLE++HLAQIAK VQK+TGAKNVRIKTVIDPSL
Sbjct: 158 VKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVIDPSL 217

Query: 194 VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLAL 233
           VAGFTIRYG  GSKL+DMSVKKQLEEIAAQL++ DV LA+
Sbjct: 218 VAGFTIRYGNEGSKLVDMSVKKQLEEIAAQLEMDDVTLAV 257

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Spinacia oleracea (taxid: 3562)

>sp|Q02758|ATPD_PEA ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1

 Score =  250 bits (639), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 139/252 (55%), Positives = 181/252 (71%), Gaps = 20/252 (7%)

Query: 1   MASLQQTATLSLQSNLFP-SGRAASRNPL----SATIPSGPR-----------RR---GA 41
           MASLQ T T SL S   P +    +R P+    S+T  S              RR   GA
Sbjct: 1   MASLQHT-TASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLKLKLKLPLTKTRRSTGGA 59

Query: 42  HGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKK 101
            G RMS+  A SYA AL DLA +NNTL++ +AD +KIE++FS+ ++ ++F +P ++   K
Sbjct: 60  LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 119

Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
           R+++ E   +S  QP T NFLN+LID+KR+D++ DI+KEFE VYN +T+TE+ VV+SVVK
Sbjct: 120 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 179

Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
           LES HLAQIAKQVQKLTGAK VR KT++DPSLVAGFT+RYG  GSK IDMSVK++LEEIA
Sbjct: 180 LESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIA 239

Query: 222 AQLDLGDVQLAL 233
           AQ+DLGD+QLA+
Sbjct: 240 AQIDLGDIQLAV 251

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Pisum sativum (taxid: 3888)

>sp|Q07300|ATPD_SORBI ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1

 Score =  217 bits (552), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 146/196 (74%)

Query: 36  PRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPT 95
           PRRRG      +   A SYA AL ++A  N TLE T +D+EK++KIF+++ + EFF NPT
Sbjct: 50  PRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPT 109

Query: 96  IDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAV 155
           +  E+K  ++DEI KS  LQP   NF+N+++D  R  ++ +IV EFE ++N +T TE+A 
Sbjct: 110 VPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVAT 169

Query: 156 VSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKK 215
           V+SVV+LES+ LAQIA+ VQK+TGAKNVR+KT +DP L+AGFT++YG+ GS LIDMSV+K
Sbjct: 170 VTSVVQLESQDLAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRK 229

Query: 216 QLEEIAAQLDLGDVQL 231
           Q+EEI ++ +L DV L
Sbjct: 230 QIEEITSEFELPDVPL 245

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Sorghum bicolor (taxid: 4558)

>sp|Q42687|ATPD_CHLRE ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 129/212 (60%), Gaps = 18/212 (8%)

Query: 28  LSATIPSGPRRRGAHGIRMSAT--------------VATSYAIALVDLAKANNTLESTSA 73
           L+A   +GPR   A  +R +                V+ SYA ALV+LA     LE+  A
Sbjct: 2   LAAKSIAGPRAFKASAVRAAPKAGRRTVVVMARKNEVSESYAKALVELADEKGKLEAVHA 61

Query: 74  DVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVD 132
           DV+ +  +  E  ++    +NP ++ +KKR ++ +I K +  Q  T N+LN+L++  R+ 
Sbjct: 62  DVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLS 121

Query: 133 VVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPS 192
           +V +I + FE++Y +MT+T++A + S VKLE E    IAK++Q+LTG+KN+++K VID S
Sbjct: 122 LVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAKKLQELTGSKNIKLKPVIDSS 181

Query: 193 LVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
           L+AGF + Y   GS  ID+SV+ Q+E +A QL
Sbjct: 182 LIAGFVVEY---GSSQIDLSVRGQIERVADQL 210

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q4G398|ATPD_EMIHU ATP synthase subunit delta, chloroplastic OS=Emiliania huxleyi GN=atpD PE=3 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 106/176 (60%), Gaps = 5/176 (2%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVDEI 108
           +A  YA AL++LA AN++L+ T+ D+  + +  +    + +F  NP I  + K+ ++ ++
Sbjct: 6   IAVPYAEALLELANANSSLKETTNDINIVSQFLANSSDLKKFLGNPLITRDAKKGVLKDV 65

Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
                +   T  FL +L+D  R+  +  I  +F E+  K  + E+A V+S V+L ++   
Sbjct: 66  L-GEQIGEKTLTFLMLLVDRGRIAYLDGIAYKFLELSYKEESIEIAKVTSSVQLSAQQQK 124

Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
            IA++++K+TGAK +++   +DP L+ GFTI   + GSKLID S++ QL++I+  L
Sbjct: 125 TIAEKLKKITGAKQIKLALKVDPQLIGGFTI---EIGSKLIDTSIRGQLKQISTLL 177

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Emiliania huxleyi (taxid: 2903)

>sp|B7KKR5|ATPD_CYAP7 ATP synthase subunit delta OS=Cyanothece sp. (strain PCC 7424) GN=atpH PE=3 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 103/188 (54%), Gaps = 7/188 (3%)

Query: 43  GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKK 101
           G  +S  +A  YA AL+ ++++NN  E    D+  +  + +   ++ EF  NP I  E K
Sbjct: 3   GSSLSLEIAEPYAQALMSVSQSNNLTERFGEDIRSLLDLLNNSPELREFLSNPVIREENK 62

Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
           +E++  I       P   NFL +L+D +R+  ++ + +++  +  ++TNT +A V S  +
Sbjct: 63  KEILQRIMGDQT-HPYLRNFLMLLVDKRRIAFLEQVCEQYLALLRQLTNTVLAEVVSATE 121

Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
           L  E    +  +V+ ++GA+ V +K  I+P L+ G  I   K GS+++D S++ QL  I+
Sbjct: 122 LNDEQRQSVIDKVKTISGAQAVELKASINPDLIGGVII---KIGSQILDASIRGQLRRIS 178

Query: 222 AQLDLGDV 229
             L LG V
Sbjct: 179 --LSLGGV 184

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|Q40610|ATPD_OCHNE ATP synthase subunit delta, chloroplastic OS=Ochrosphaera neapolitana GN=atpD PE=3 SV=1

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 107/175 (61%), Gaps = 5/175 (2%)

Query: 48  ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVD 106
           A +A +YA AL++LA +N +L+ T+ D+  + +  +    + +F  NP I  E+K+ ++ 
Sbjct: 4   AKIADAYAEALLELANSNKSLKETTNDMNIVSQFLANSSDLKKFLGNPLITRERKKNVLK 63

Query: 107 EICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEH 166
           ++     +  ++ NFL +L++  RV  +  I ++F E+  K    E+A V+S V L ++ 
Sbjct: 64  DVL-GEQISSVSLNFLMLLVNRGRVAFLDKIAQKFLELSYKQDAIEIAKVTSSVALSAQQ 122

Query: 167 LAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
             ++A +++ +TGAK +++   ++P L+ GFT+   + GSKLID S++ QL++I+
Sbjct: 123 QKELAGKLKLITGAKKIKLALRVEPKLIGGFTV---EIGSKLIDTSIRGQLKKIS 174

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Ochrosphaera neapolitana (taxid: 35137)

>sp|Q1XDP4|ATPD_PORYE ATP synthase subunit delta, chloroplastic OS=Porphyra yezoensis GN=atpD PE=3 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 108/183 (59%), Gaps = 15/183 (8%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV--- 105
           +A  YA+AL+DLAK     E  S D++ I+ I ++  ++  F  NP   +E K+E++   
Sbjct: 10  IAQPYAVALLDLAKTKKVTEKVSQDIQSIQNILAQSDKLKIFLANPLKTVEAKKEVIIAT 69

Query: 106 --DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLE 163
             D+I ++      T +FL IL+D KR+ ++  I  ++ E+  +M +  +A +++ + L 
Sbjct: 70  VGDQINEN------TLSFLMILVDRKRIGMLDAIASKYLELAYQMESLTIANINTSIALS 123

Query: 164 SEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQ 223
            +    + ++++ +T AK V++   ++P L+ GFTI+    GSK+ID S++ QL ++A+ 
Sbjct: 124 PDQETLLTEKIKVMTKAKEVKLIISVEPELIGGFTIQ---IGSKVIDTSIRGQLRQMASH 180

Query: 224 LDL 226
           LD+
Sbjct: 181 LDV 183

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Porphyra yezoensis (taxid: 2788)

>sp|P35010|ATPD_GALSU ATP synthase subunit delta, chloroplastic OS=Galdieria sulphuraria GN=atpD PE=3 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 99/170 (58%), Gaps = 5/170 (2%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEI 108
           +A  YA  L ++A   N+L   +  +  I+ +  +  + + F VNP I  + K+  + +I
Sbjct: 7   IAKVYAEGLFEIANTKNSLAEINEQLNSIKSVLKQMPEFYYFLVNPLISQQIKKNTI-KI 65

Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
             ++ L  +T NFL ILI+ +R+    DIV +F  ++NK TNT +  ++SV+ L  +   
Sbjct: 66  VFNNNLDKITLNFLLILIERRRIIYFYDIVDQFILIWNKATNTSVVEIASVISLTEKQQQ 125

Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLE 218
            +  +++++T A  +++K  IDPSL+ G  I   K+GS LID+S+K +L+
Sbjct: 126 YLINKLKEITKANYIKLKLKIDPSLIGGLII---KFGSNLIDLSLKGKLK 172

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Galdieria sulphuraria (taxid: 130081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
224145221	252	predicted protein [Populus trichocarpa]	0.888	0.920	0.653	2e-82
225460496	244	PREDICTED: ATP synthase delta chain, chl	0.881	0.942	0.643	4e-80
224135871	250	predicted protein [Populus trichocarpa]	0.888	0.928	0.658	2e-78
297809143	233	hypothetical protein ARALYDRAFT_489817 [	0.885	0.991	0.643	8e-78
18491181	250	putative H+-transporting ATP synthase [A	0.885	0.924	0.645	2e-77
15233985	234	F-type H+-transporting ATPase subunit de	0.885	0.987	0.645	3e-77
449441205	240	PREDICTED: ATP synthase delta chain, chl	0.888	0.966	0.643	4e-75
416681	248	RecName: Full=ATP synthase delta chain,	0.850	0.895	0.575	3e-72
170098	257	ATP synthase delta subunit precursor [Sp	0.823	0.836	0.609	6e-70
114584	257	RecName: Full=ATP synthase delta chain,	0.823	0.836	0.609	1e-69

>gi|224145221|ref|XP_002325568.1| predicted protein [Populus trichocarpa] gi|222862443|gb|EEE99949.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/251 (65%), Positives = 193/251 (76%), Gaps = 19/251 (7%)

Query: 1   MASLQQTATLSLQSNLFPSGRA----ASRNPL----SATIPS-----------GPRRRGA 41
           MAS  Q AT SLQS   PS R      S  PL    SAT PS             R   A
Sbjct: 1   MASALQNATASLQSKTPPSARLPTNFTSPKPLNLSFSATFPSLNLSTTATTTNRRRGGSA 60

Query: 42  HGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKK 101
            G +MSAT A SYA AL D+A +NNTL++T++D++KIE++FS    ++FF NPTID+EKK
Sbjct: 61  LGTKMSATAAGSYASALADVAISNNTLDATASDIDKIERLFSNPAANDFFTNPTIDLEKK 120

Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
           R++VDE  KSSALQPLT NF+NILID+KRVD+VKDIV EFE+VYNK+T+T++AVVSSVV 
Sbjct: 121 RQVVDEFAKSSALQPLTANFINILIDSKRVDLVKDIVVEFEKVYNKLTDTQLAVVSSVVA 180

Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
           LES+HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFT+RYG  GSK+IDMSVKKQLEEI 
Sbjct: 181 LESQHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTVRYGSSGSKMIDMSVKKQLEEIT 240

Query: 222 AQLDLGDVQLA 232
           AQLDL D++LA
Sbjct: 241 AQLDLSDIELA 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460496|ref|XP_002274963.1| PREDICTED: ATP synthase delta chain, chloroplastic [Vitis vinifera]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 157/244 (64%), Positives = 190/244 (77%), Gaps = 14/244 (5%)

Query: 1   MASLQQTATLSLQSNLFPSG-RAASRNPL----SATIPS--------GPRRRGAHGIRMS 47
           MA++Q +  ++ QS   PS  ++ S  PL    S   PS        G  R GA   RMS
Sbjct: 1   MAAMQHSP-VTFQSRSPPSAAKSLSNKPLNLSFSGNFPSFRLTNKVAGKSRSGASSARMS 59

Query: 48  ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDE 107
           AT A SYA AL D+AK+N TL++T+ DVEKIEK+ S++Q+  FF NPTIDIEKKR ++DE
Sbjct: 60  ATAAGSYATALADVAKSNGTLDTTAEDVEKIEKVLSDEQVLGFFCNPTIDIEKKRNVLDE 119

Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
           I K+S +QP T NFLNIL+D KR+D++K+I KEFE VYN++T+TE+AVVSSVVKLESEHL
Sbjct: 120 IAKTSGIQPHTMNFLNILVDMKRIDLIKEIAKEFELVYNRLTDTELAVVSSVVKLESEHL 179

Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLG 227
           AQIAKQVQKLTGAKNVRIKT IDPSLVAGFTIRYG  GSKLIDMSVKKQLEEIAA+L+LG
Sbjct: 180 AQIAKQVQKLTGAKNVRIKTAIDPSLVAGFTIRYGSGGSKLIDMSVKKQLEEIAAELELG 239

Query: 228 DVQL 231
           ++QL
Sbjct: 240 NIQL 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135871|ref|XP_002327324.1| predicted protein [Populus trichocarpa] gi|222835694|gb|EEE74129.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/249 (65%), Positives = 193/249 (77%), Gaps = 17/249 (6%)

Query: 1   MASLQQTATLSLQSNLFPSGRA----ASRNPL----SATIPS-------GPRRRG--AHG 43
           MAS  Q A +SLQS + PS R      S  PL    SAT PS         R RG  A G
Sbjct: 1   MASALQNAAVSLQSKIPPSARLPTNFTSPKPLNLSFSATFPSLNLSTTTTLRLRGGSALG 60

Query: 44  IRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKRE 103
            +MSA  A SYA AL D+AK+NNTL++TS+D+ K++K+FS+  +++FF NPT+D EKKR+
Sbjct: 61  TKMSAAAAGSYAAALADVAKSNNTLDATSSDMGKVDKLFSDTAVYDFFANPTVDTEKKRQ 120

Query: 104 MVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLE 163
           MVDE  KSS LQP T NF+NILIDAKR+D+VKDIVKEFE VYN +T+TE+AVVSSVV LE
Sbjct: 121 MVDEFAKSSPLQPHTVNFVNILIDAKRIDLVKDIVKEFEMVYNSLTDTELAVVSSVVPLE 180

Query: 164 SEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQ 223
           S+HLAQIAKQVQKLTGAKNVR+K VIDPSLVAGFT+RYG  GSKLIDMSVKKQLEEIAAQ
Sbjct: 181 SQHLAQIAKQVQKLTGAKNVRVKPVIDPSLVAGFTVRYGNSGSKLIDMSVKKQLEEIAAQ 240

Query: 224 LDLGDVQLA 232
           LDL D++LA
Sbjct: 241 LDLSDIELA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809143|ref|XP_002872455.1| hypothetical protein ARALYDRAFT_489817 [Arabidopsis lyrata subsp. lyrata] gi|297318292|gb|EFH48714.1| hypothetical protein ARALYDRAFT_489817 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 150/233 (64%), Positives = 186/233 (79%), Gaps = 2/233 (0%)

Query: 1   MASLQQTATLSLQSNLFPSGRAASRN-PLSATIPSGPRRRGAHGIRMSATVATSYAIALV 59
           MASLQQT   SLQS L PS    +R+ PL  T P       A G RMSAT A+SYA+AL 
Sbjct: 1   MASLQQT-LFSLQSKLPPSSFQIARSLPLRKTFPIRINNGNAAGARMSATAASSYAMALA 59

Query: 60  DLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTG 119
           D+AK N+T+E T AD+EK++++FS+ Q+  FF NPTI +EKKR+++D+I KSS+LQ  T 
Sbjct: 60  DVAKRNDTMELTVADIEKLDQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHTS 119

Query: 120 NFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTG 179
           NFLN+L+DA R++++ +IVKEFE VYNK+T+T++A V SVVKLE   LAQIAKQVQKLTG
Sbjct: 120 NFLNVLVDANRINIMTEIVKEFELVYNKLTDTQLAEVRSVVKLEPPQLAQIAKQVQKLTG 179

Query: 180 AKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLA 232
           AKNVR+KTVIDPSLVAGFTIRYG  GSKLIDMSVKKQLE+IA QL+LG++QLA
Sbjct: 180 AKNVRVKTVIDPSLVAGFTIRYGDSGSKLIDMSVKKQLEDIAQQLELGEIQLA 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18491181|gb|AAL69493.1| putative H+-transporting ATP synthase [Arabidopsis thaliana]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 188/234 (80%), Gaps = 3/234 (1%)

Query: 1   MASLQQTATLSLQSNLFPSGRAASRN-PLSATIPSGPRRRG-AHGIRMSATVATSYAIAL 58
           MASLQQT   SLQS L PS    +R+ PL  T P      G A G RMSAT A+SYA+AL
Sbjct: 17  MASLQQTL-FSLQSKLPPSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAASSYAMAL 75

Query: 59  VDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLT 118
            D+AK N+T+E T  D+EK+E++FS+ Q+  FF NPTI +EKKR+++D+I KSS+LQ  T
Sbjct: 76  ADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHT 135

Query: 119 GNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLT 178
            NFLN+L+DA R+++V +IVKEFE VYNK+T+T++A V SVVKLE+  LAQIAKQVQKLT
Sbjct: 136 SNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLT 195

Query: 179 GAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLA 232
           GAKNVR+KTVID SLVAGFTIRYG+ GSKLIDMSVKKQLE+IA+QL+LG++QLA
Sbjct: 196 GAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233985|ref|NP_192703.1| F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana] gi|7267660|emb|CAB78088.1| H+-transporting ATP synthase-like protein [Arabidopsis thaliana] gi|7321084|emb|CAB82132.1| H+-transporting ATP synthase-like protein [Arabidopsis thaliana] gi|17473800|gb|AAL38334.1| H+-transporting ATP synthase-like protein [Arabidopsis thaliana] gi|21386985|gb|AAM47896.1| H+-transporting ATP synthase-like protein [Arabidopsis thaliana] gi|21593484|gb|AAM65451.1| H+-transporting ATP synthase-like protein [Arabidopsis thaliana] gi|21689783|gb|AAM67535.1| putative H+-transporting ATP synthase [Arabidopsis thaliana] gi|332657377|gb|AEE82777.1| F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 188/234 (80%), Gaps = 3/234 (1%)

Query: 1   MASLQQTATLSLQSNLFPSGRAASRN-PLSATIPSGPRRRG-AHGIRMSATVATSYAIAL 58
           MASLQQT   SLQS L PS    +R+ PL  T P      G A G RMSAT A+SYA+AL
Sbjct: 1   MASLQQT-LFSLQSKLPPSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAASSYAMAL 59

Query: 59  VDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLT 118
            D+AK N+T+E T  D+EK+E++FS+ Q+  FF NPTI +EKKR+++D+I KSS+LQ  T
Sbjct: 60  ADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHT 119

Query: 119 GNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLT 178
            NFLN+L+DA R+++V +IVKEFE VYNK+T+T++A V SVVKLE+  LAQIAKQVQKLT
Sbjct: 120 SNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLT 179

Query: 179 GAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLA 232
           GAKNVR+KTVID SLVAGFTIRYG+ GSKLIDMSVKKQLE+IA+QL+LG++QLA
Sbjct: 180 GAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441205|ref|XP_004138373.1| PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus] gi|449503764|ref|XP_004162165.1| PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 155/241 (64%), Positives = 194/241 (80%), Gaps = 9/241 (3%)

Query: 1   MASLQQTATLSLQSNLFPSGRAASRNP----LSATIPS-GPR---RRGAHGIRMSATVAT 52
           MA+L QT T SLQ+ L P+ R +   P     SAT PS G R    R   G RMSAT A 
Sbjct: 1   MAALHQT-TASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAG 59

Query: 53  SYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSS 112
           SYA AL ++A +NNTL++TS+DVEKIE +F+++++ +FF NPTI +EKK+ +VDE+  SS
Sbjct: 60  SYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSS 119

Query: 113 ALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAK 172
           +LQP + NFL IL+DAKR+D++K+IV EFE VYNK+TNTE+AVVSSVV+LE +HLAQIAK
Sbjct: 120 SLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 179

Query: 173 QVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLA 232
           QVQKL+GAKNVRIKT IDPSLVAGFT+R+G  GSKLID+SVKKQLEEIAAQLDLG++QLA
Sbjct: 180 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 239

Query: 233 L 233
           +
Sbjct: 240 V 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|416681|sp|P32980.1|ATPD_TOBAC RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor gi|19787|emb|CAA45153.1| chloroplast ATP synthase (delta subunit) [Nicotiana tabacum]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/259 (57%), Positives = 185/259 (71%), Gaps = 37/259 (14%)

Query: 1   MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGP------------------------ 36
           MA+LQQT  ++ QS          R+P    I SGP                        
Sbjct: 1   MAALQQTP-ITFQS----------RSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRT 49

Query: 37  --RRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNP 94
             R  GA G +M A+ A SYA AL D+AK+N TLE T+AD+EKIEKI  ++ +  FFV+P
Sbjct: 50  SRRGGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSP 109

Query: 95  TIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMA 154
            +  EKKRE+VDEI  SS++QP   NFLNIL+D KRV+++K+IVKEFE+VYN +T+TE+A
Sbjct: 110 IVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELA 169

Query: 155 VVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVK 214
           VV+SVVKLES+HLAQIAK VQ+LTG+KNVRIKTVID SLVAGFTIRYG  GSKLIDMSVK
Sbjct: 170 VVTSVVKLESQHLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVK 229

Query: 215 KQLEEIAAQLDLGDVQLAL 233
           KQLE+IAAQL++GD+QLA+
Sbjct: 230 KQLEDIAAQLEIGDIQLAV 248

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170098|gb|AAA34024.1| ATP synthase delta subunit precursor [Spinacia oleracea] gi|226262|prf||1503275A ATP synthase delta

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 172/220 (78%), Gaps = 5/220 (2%)

Query: 19  SGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSA 73
           S   A+ NPL   I +  +     R GA G RM  + A+ YA AL D+A    TLE+T++
Sbjct: 38  SSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNS 97

Query: 74  DVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDV 133
           DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI  +S LQP T NF+NILID++R+++
Sbjct: 98  DVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINL 157

Query: 134 VKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL 193
           VK+I+ EFE+V+NK+T TE+AVV+SVVKLE++HLAQIAK VQK+TGAKNVRIKTVIDPSL
Sbjct: 158 VKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVIDPSL 217

Query: 194 VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLAL 233
           VAGFTIRYG  GSKL+DMSVKKQLEEIAAQL++ DV LA+
Sbjct: 218 VAGFTIRYGNEGSKLVDMSVKKQLEEIAAQLEMDDVTLAV 257

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114584|sp|P11402.2|ATPD_SPIOL RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor gi|21240|emb|CAA43634.1| unnamed protein product [Spinacia oleracea]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 172/220 (78%), Gaps = 5/220 (2%)

Query: 19  SGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSA 73
           S   A+ NPL   I +  +     R GA G RM  + A+ YA AL D+A    TLE+T++
Sbjct: 38  SSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNS 97

Query: 74  DVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDV 133
           DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI  +S LQP T NF+NILID++R+++
Sbjct: 98  DVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINL 157

Query: 134 VKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL 193
           VK+I+ EFE+V+NK+T TE+AVV+SVVKLE++HLAQIAK VQK+TGAKNVRIKTVIDPSL
Sbjct: 158 VKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVIDPSL 217

Query: 194 VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLAL 233
           VAGFTIRYG  GSKL+DMSVKKQLEEIAAQL++ DV LA+
Sbjct: 218 VAGFTIRYGNEGSKLVDMSVKKQLEEIAAQLEMDDVTLAV 257

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2136922	234	ATPD "ATP synthase delta-subun	0.885	0.987	0.645	1.8e-71
TIGR_CMR|BA_5550	180	BA_5550 "ATP synthase F1, delt	0.651	0.944	0.312	1.4e-18
TIGR_CMR|DET_0561	180	DET_0561 "ATP synthase F1, del	0.662	0.961	0.277	1.2e-17
TIGR_CMR|CBU_1942	185	CBU_1942 "ATP synthase F1, del	0.655	0.924	0.338	6e-16
UNIPROTKB|P27180	185	atpH "ATP synthase subunit del	0.681	0.962	0.267	1.6e-15
TIGR_CMR|CHY_2548	177	CHY_2548 "ATP synthase F1, del	0.632	0.932	0.296	1.6e-15
WB|WBGene00000230	228	atp-3 [Caenorhabditis elegans	0.624	0.714	0.232	4.9e-14
UNIPROTKB|P48047	213	ATP5O "ATP synthase subunit O,	0.624	0.765	0.260	2.7e-13
UNIPROTKB|Q5RD23	213	ATP5O "ATP synthase subunit O,	0.628	0.769	0.258	2.7e-13
TIGR_CMR|SPO_3165	186	SPO_3165 "ATP synthase delta c	0.681	0.956	0.228	7.1e-13

TAIR|locus:2136922 ATPD "ATP synthase delta-subunit gene" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 151/234 (64%), Positives = 188/234 (80%)

Query:     1 MASLQQTATLSLQSNLFPSGRAASRN-PLSATIPSGPRRRG-AHGIRMSATVATSYAIAL 58
             MASLQQT   SLQS L PS    +R+ PL  T P      G A G RMSAT A+SYA+AL
Sbjct:     1 MASLQQTL-FSLQSKLPPSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAASSYAMAL 59

Query:    59 VDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLT 118
              D+AK N+T+E T  D+EK+E++FS+ Q+  FF NPTI +EKKR+++D+I KSS+LQ  T
Sbjct:    60 ADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHT 119

Query:   119 GNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLT 178
              NFLN+L+DA R+++V +IVKEFE VYNK+T+T++A V SVVKLE+  LAQIAKQVQKLT
Sbjct:   120 SNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLT 179

Query:   179 GAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLA 232
             GAKNVR+KTVID SLVAGFTIRYG+ GSKLIDMSVKKQLE+IA+QL+LG++QLA
Sbjct:   180 GAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA;IMP

GO:0015979 "photosynthesis" evidence=RCA;IMP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TIGR_CMR|BA_5550 BA_5550 "ATP synthase F1, delta subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 55/176 (31%), Positives = 91/176 (51%)

Query:    50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEI 108
             VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +
Sbjct:     6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANV 65

Query:   109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
               S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E   
Sbjct:    66 FGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKL 123

Query:   169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
              IA+   K TG   +R+K V+D  L+ G  +R G   +++ D S++ +L  I  +L
Sbjct:   124 NIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVRIG---NRIYDGSLQGKLARIQREL 176

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045262 "plasma membrane proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|DET_0561 DET_0561 "ATP synthase F1, delta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 50/180 (27%), Positives = 94/180 (52%)

Query:    50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEIC 109
             +A  YA AL +LAK   +L+    D++ +  +  +  + EF  NP I   +K ++   + 
Sbjct:     8 IAMRYAQALYELAKEQKSLDKWQEDLQDLSSLTEDASVAEFLSNPKIASARKHKV---LA 64

Query:   110 KSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQ 169
             K S + PL  N +++L+  +R+ +++ +  E+  + N+    E A+V++        +  
Sbjct:    65 KLSNIDPLMLNLVDMLVATRRLGIMRAVSGEYNRLLNEARGVEDAIVTTAKPSSEADIEI 124

Query:   170 IAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDV 229
             I +Q+ K+TG K + + T  DP L+AG   R G    KLID SV ++L  +  ++  G +
Sbjct:   125 IRQQLSKITG-KKINVVTATDPGLIAGLKARIG---DKLIDGSVSRRLVLLQNEISQGRI 180

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|CBU_1942 CBU_1942 "ATP synthase F1, delta subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 62/183 (33%), Positives = 92/183 (50%)

Query:    49 TVATSYA-IALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTI-DIEKKREMVD 106
             T+A  YA  A  D  KAN  LE+  A      KI   K++    +NP   D E K  + D
Sbjct:     6 TLARPYAKAAFADGQKANQ-LEAWLAVFTAFSKIIKNKEVARQIINPKFSDKEIKTLLFD 64

Query:   107 EIC-----KSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
              I       +  L+    +FL +LID KR+ ++ DI   ++++ NK      A V+ V  
Sbjct:    65 LIQTIEPESTKQLKDKIDHFLQLLIDEKRLMILPDIALVYQQLLNKYQGIIEASVTYVFP 124

Query:   162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
             L  EH  QI KQ++K   A+ V++K + D SL+ G  IR G W   ++D S+K +L  +A
Sbjct:   125 LNDEHRQQIQKQLEKRFNAE-VKLKMIKDESLLGGVIIRAGNW---VMDGSIKGKLTRLA 180

Query:   222 AQL 224
               L
Sbjct:   181 ENL 183

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045262 "plasma membrane proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

UNIPROTKB|P27180 atpH "ATP synthase subunit delta" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 49/183 (26%), Positives = 95/183 (51%)

Query:    43 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKK 101
             G   S+ +A  YA AL+ LA+  N  E    ++  +  +  +   +     +P +  E K
Sbjct:     3 GSLYSSKIAEPYAQALIGLAQQQNLTEVFGDNLRSLLTLLQDSPDLSAVLSSPVVKDEDK 62

Query:   102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
             + ++  +        L  NFL +L+D +R+  ++ I +++  +  + TNT +A V+S +K
Sbjct:    63 KSVLRSVLGDGGNGYLL-NFLMLLVDKRRIVFLEAICEQYLALLRQFTNTVLAEVTSALK 121

Query:   162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
             L      Q+ ++V++LTGA+ V ++T +D  ++ G  I   K GS++ D S++ QL  + 
Sbjct:   122 LTDAQKDQVKERVKQLTGAQAVELETKVDGDILGGIVI---KVGSQVFDSSLRGQLRRVG 178

Query:   222 AQL 224
               L
Sbjct:   179 LSL 181

GO:0045260 "plasma membrane proton-transporting ATP synthase complex" evidence=IDA

TIGR_CMR|CHY_2548 CHY_2548 "ATP synthase F1, delta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 51/172 (29%), Positives = 89/172 (51%)

Query:    47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
             S  VA  YA AL +LA+    ++S S D E +EK   E   + +   NP +    K+E++
Sbjct:     3 SLAVAKRYASALFELAREKGAIDSISHDFEVLEKAIQETPDVKKVLDNPVLIPAAKKELL 62

Query:   106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
             +++       P+T +FL +L+D +R   + +I+  F E   +     +  V S  +L+ +
Sbjct:    63 EKLFPD--FNPITKSFLKLLVDKRREVYLPEIIALFAEKLREERGEMLVEVESARELKGD 120

Query:   166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQL 217
                 I +++ +LTG K V +K   +P L+ G  +R G   +K+ D S+K QL
Sbjct:   121 LSDLIKEKLSRLTG-KKVTMKVRTNPDLIGGIVVRVG---NKVYDGSIKNQL 168

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

WB|WBGene00000230 atp-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 39/168 (23%), Positives = 81/168 (48%)

Query:    54 YAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEICKSS 112
             YA AL       N L+  S D+  +  ++ + K+  EF ++PT+   KK+  ++ I    
Sbjct:    55 YAAALYSAGHKQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKL 114

Query:   113 ALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAK 172
              L   TGNFL +L +  R++ ++ +V  FE +           V+S  +L S +   ++ 
Sbjct:   115 GLTKETGNFLGLLAENGRLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSD 174

Query:   173 QVQKL-TGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEE 219
              + K+    + + +   + PS++ G  +  G    K +D+S+  ++++
Sbjct:   175 ALSKIGKSGQKLTVTYAVKPSILGGLVVTIG---DKYVDLSIASRVKK 219

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP

UNIPROTKB|P48047 ATP5O "ATP synthase subunit O, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 44/169 (26%), Positives = 85/169 (50%)

Query:    54 YAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSA 113
             YA AL   A   N LE    ++ ++ +I  E ++    +NP +    K + +++I     
Sbjct:    41 YATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKER 100

Query:   114 LQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQ 173
               PLT N +N+L +  R+   + +V  F  + +         V+S   LE   L+++ K 
Sbjct:   101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSEL-KT 159

Query:   174 VQK--LTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
             V K  L+  + ++++   DPS++ G  +R G+   K +DMSVK +++++
Sbjct:   160 VLKSFLSQGQVLKLEAKTDPSILGGMIVRIGE---KYVDMSVKTKIQKL 205

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005496 "steroid binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS;IDA

GO:0008144 "drug binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005215 "transporter activity" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5RD23 ATP5O "ATP synthase subunit O, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 44/170 (25%), Positives = 86/170 (50%)

Query:    54 YAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSA 113
             YA AL   A   N LE    ++ ++ +I  E ++    +NP +    K + +++I     
Sbjct:    41 YATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPYVKRSIKVKSLNDITAKER 100

Query:   114 LQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQ 173
               PLT N +N+L +  R+   + +V  F  + +         V+S   LE   L+++ K 
Sbjct:   101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSEL-KT 159

Query:   174 VQK--LTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
             V K  L+  + ++++   DPS++ G  +R G+   K +DMSVK ++++++
Sbjct:   160 VLKSFLSQGQVLKLEAKTDPSILGGMIVRIGE---KYVDMSVKTKIQKLS 206

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

TIGR_CMR|SPO_3165 SPO_3165 "ATP synthase delta chain" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 42/184 (22%), Positives = 85/184 (46%)

Query:    46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREM 104
             +SA +A  YA A+  +A+ NN L+     +  +     E   +     +P +   ++   
Sbjct:     7 ISAGIAQRYATAIFAIAQDNNDLKGLETGINDLTAALGESADLRSLIASPLVSRAEQEAA 66

Query:   105 VDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES 164
             +  + K   L P+  N L+++   +R+ V+  ++    +   +      A V+S   L  
Sbjct:    67 ITAVAKKMKLNPVLANALSLMAQKRRLFVLPQLLTALRDALAEARGEVTAEVASAKALTK 126

Query:   165 EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA-AQ 223
               + ++ K + +  G K+V I   +D SL+ G  +   K GSK+ID S++ +L  +  A 
Sbjct:   127 TQIEKLTKTLSEKVG-KSVTINATVDESLIGGLVV---KVGSKMIDSSIRSKLNSLQNAM 182

Query:   224 LDLG 227
              ++G
Sbjct:   183 KEVG 186

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32980	ATPD_TOBAC	No assigned EC number	0.5752	0.8505	0.8951	N/A	no
P11402	ATPD_SPIOL	No assigned EC number	0.6090	0.8237	0.8365	N/A	no
Q02758	ATPD_PEA	No assigned EC number	0.5515	0.8888	0.9243	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00190794	hypothetical protein (252 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0023015401	SubName- Full=Putative uncharacterized protein; (216 aa)						•			0.899
	fgenesh4_pm.C_LG_II000842	inorganic pyrophosphatase (EC-3.6.1.1) (215 aa)						•			0.899
	fgenesh4_pg.C_LG_VII001101	SubName- Full=Putative uncharacterized protein; (213 aa)						•			0.899
	eugene3.00090843	inorganic pyrophosphatase (EC-3.6.1.1) (298 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XIV0223	SubName- Full=Putative uncharacterized protein; (216 aa)						•			0.899
	estExt_fgenesh4_pg.C_LG_XIII0040	vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)						•			0.899
	estExt_fgenesh4_pg.C_1520062	SubName- Full=Putative uncharacterized protein; (768 aa)						•			0.899
	estExt_fgenesh4_pg.C_1330100	vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_X3050	vacuolar H+-translocating inorganic pyrophosphatase (636 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_I4261	SubName- Full=Putative uncharacterized protein; (296 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam00213	171	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	3e-48
PRK05758	177	PRK05758, PRK05758, F0F1 ATP synthase subunit delt	1e-39
PRK13429	181	PRK13429, PRK13429, F0F1 ATP synthase subunit delt	1e-36
COG0712	178	COG0712, AtpH, F0F1-type ATP synthase, delta subun	2e-36
CHL00119	184	CHL00119, atpD, ATP synthase CF1 delta subunit; Va	2e-34
TIGR01145	172	TIGR01145, ATP_synt_delta, ATP synthase, F1 delta	4e-33
PRK13441	180	PRK13441, PRK13441, F0F1 ATP synthase subunit delt	2e-15
PRK13436	179	PRK13436, PRK13436, F0F1 ATP synthase subunit delt	2e-14
PRK13434	184	PRK13434, PRK13434, F0F1 ATP synthase subunit delt	1e-13
PRK08474	176	PRK08474, PRK08474, F0F1 ATP synthase subunit delt	4e-13
PRK13430	271	PRK13430, PRK13430, F0F1 ATP synthase subunit delt	5e-04

>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit

 Score =  157 bits (399), Expect = 3e-48
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 6/176 (3%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEI 108
           +A  YA AL +LAK   +L+    D+E ++ + +E   + EF  NP I  E+K+ ++  +
Sbjct: 1   IARRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAV 60

Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
                L  LT NFL +L +  R+ ++ +I +EFEE+YN+      A V+S V L  E L 
Sbjct: 61  FGG-KLSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAVPLSEEQLK 119

Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
            +   ++K TG K V+++T +DPSL+ G  +R    G K+ID SV+ +LE +   L
Sbjct: 120 ALKAALEKKTG-KKVKLETKVDPSLIGGVVVRV---GDKVIDGSVRGKLERLKRAL 171

The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401. Length = 171

>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated

 Score =  135 bits (342), Expect = 1e-39
 Identities = 49/179 (27%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 46  MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMV 105
             +TVA  YA AL ++A    +L++ S ++  + ++   + +     +P +  E+K++++
Sbjct: 3   ELSTVARPYAKALFEVALEKGSLDAWSEELTFLAEVAENEDLAALLSSPLVSAEQKKKLL 62

Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
             + KS  L     NFL +L +  R+ ++ +I+++FE +  +  N   A V+S   L  E
Sbjct: 63  AAVFKS--LSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEE 120

Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
            L ++   ++K  G K V++   +DPSL+ G  I+    G ++ID SV+ +LE +   L
Sbjct: 121 QLDKLKAALEKRLGRK-VKLNEKVDPSLIGGVIIKV---GDRVIDGSVRGKLERLKDAL 175

Length = 177

>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional

 Score =  127 bits (322), Expect = 1e-36
 Identities = 48/177 (27%), Positives = 95/177 (53%), Gaps = 5/177 (2%)

Query: 49  TVATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDE 107
            +A  YA AL  LAK    L+S   +++++ ++  +  ++ +   NP +  E+K+ ++++
Sbjct: 5   AIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEK 64

Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
           +     + P   NFL +L D +R+ ++ +I   + E+ ++      A V+S V L     
Sbjct: 65  LLGKLKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQ 124

Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
             I ++++K+TG K V + T +DPSL+ G  ++    G K++D SV+ QL  +   L
Sbjct: 125 EAIRQKLEKMTG-KKVELDTAVDPSLIGGVVVKI---GDKVLDASVRTQLRRLKETL 177

Length = 181

>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

 Score =  126 bits (320), Expect = 2e-36
 Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 6/180 (3%)

Query: 46  MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREM 104
             +TVA  YA AL +LA+    LE    ++  + +I     ++ +   +P +  E K+E+
Sbjct: 3   ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKEL 62

Query: 105 VDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES 164
           +  I K     PL  NFL +L + KR++++ +I++EF ++  +      A V+S  +L  
Sbjct: 63  LISIFKK-IGDPLLQNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSD 121

Query: 165 EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
           E L ++  +++K  G K V++   IDPSL+ G  I+    G ++ID SV+ +L+ +A  L
Sbjct: 122 EQLTKLEAKLEKKFGKK-VKLNNKIDPSLIGGLIIKV---GDEVIDGSVRGKLKRLAKAL 177

Length = 178

>gnl|CDD|177042 CHL00119, atpD, ATP synthase CF1 delta subunit; Validated

 Score =  122 bits (307), Expect = 2e-34
 Identities = 58/177 (32%), Positives = 107/177 (60%), Gaps = 5/177 (2%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEI 108
           +A  YA AL++ AK  N +E  +AD++ I    +E  ++ +F  NP I    K+E++ + 
Sbjct: 8   IAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKT 67

Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
             S  +   T  FL +L+D  R+ ++  I++++ E+  K+ + ++A VS+ V L S    
Sbjct: 68  FGSQ-INENTLKFLMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEE 126

Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225
            + ++++++T AK +++   +DPSL+ GF I   K GSK+ID S+K QL+++A+ LD
Sbjct: 127 ALIEKLKEMTNAKEIKLVITVDPSLIGGFLI---KIGSKVIDTSIKGQLKQLASHLD 180

Length = 184

>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit

 Score =  118 bits (297), Expect = 4e-33
 Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 5/176 (2%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKIF-SEKQIHEFFVNPTIDIEKKREMVDEI 108
           VA  YA AL ++A   ++LE     +  ++++  + K++ +F  NP I  EKK+E +  +
Sbjct: 1   VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNV 60

Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
                L   + N L +L +  R+  + DI+ +F ++  +   T    V S   L  +  A
Sbjct: 61  FGEQ-LDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQA 119

Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
           +IA++++K+TGA  V++   +D  L+ G  IR    G ++ID SV+ QL+ ++ QL
Sbjct: 120 KIAEKLEKITGAAKVKLNCKVDKDLIGGVIIRI---GDRVIDGSVRGQLKRLSRQL 172

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity [Energy metabolism, ATP-proton motive force interconversion]. Length = 172

>gnl|CDD|184054 PRK13441, PRK13441, F0F1 ATP synthase subunit delta; Provisional

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 8/178 (4%)

Query: 46  MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMV 105
             + +A+ YA AL+++A      E     ++ + +I+  +   EFF NP +  EKK  ++
Sbjct: 2   RYSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIY--ESAKEFFDNPIVKPEKKVSLI 59

Query: 106 DEICKSSALQP--LTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLE 163
            EI K    +      NFLN++ + KR  ++  I   FE             +++  +L 
Sbjct: 60  KEIMKEFGQEMDEFFENFLNLVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELS 119

Query: 164 SEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
            E L  + K V+K      V  +  ID SL+AG  + +     K +D++V+ +L++IA
Sbjct: 120 DEELKLLRKFVRKYVLRDPV-FEETIDESLIAGAVVEF---EGKRLDVTVQGRLKKIA 173

Length = 180

>gnl|CDD|184053 PRK13436, PRK13436, F0F1 ATP synthase subunit delta; Provisional

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 54  YAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVDEICKSS 112
           YA AL D+A   N +E    +V KI +I    + + +   +  ID E+K +++D+I  S+
Sbjct: 11  YAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIF-SA 69

Query: 113 ALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAK 172
            +     NFL IL        +K I+K+F ++ N+  N     + +   L    +++   
Sbjct: 70  KIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFES 129

Query: 173 QVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
           ++ K    K V +   IDP L+AG  I   K  +K+ + S+K +L+E+  Q+
Sbjct: 130 KLSKKLN-KKVHLVNKIDPKLIAGIKI---KVDNKVFENSIKSKLKELKKQV 177

Length = 179

>gnl|CDD|139571 PRK13434, PRK13434, F0F1 ATP synthase subunit delta; Provisional

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 50  VATSYAIALVDLAKANNTLESTSADVEKIEKI-FSEKQIHEFFVNPTIDIEKKREMVDEI 108
           V+  YA AL+    A N+ E    ++  + ++ F +++I  FF++PT+  E+K + + + 
Sbjct: 6   VSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKN 62

Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
            +      +T NFL +L++  R   + +I K+F    +K      A + S   LE   + 
Sbjct: 63  LRGKISD-ITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVD 121

Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
           ++   + +   ++   ++   D +L+ GF +++       I+ S+  QL EI
Sbjct: 122 KLGSILSEKFKSE-FILEVSEDKNLLGGFVVQFNDL---KIEKSIASQLGEI 169

Length = 184

>gnl|CDD|236271 PRK08474, PRK08474, F0F1 ATP synthase subunit delta; Validated

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 46  MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMV 105
           M   +A  YA AL+    ++  L    ++++ +   F++++  E   +P I  E+K E +
Sbjct: 1   MEELIAKRYAKALLSSLSSDE-LNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFL 59

Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
                ++       NF+ +L + KR++++  I KE E       N  + VV S  KL  E
Sbjct: 60  LSFVDNAN--AKFQNFIKLLAENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEE 117

Query: 166 HLAQIAKQVQKLTGAK 181
            L ++ +++ K   AK
Sbjct: 118 TLKKLEEKLSKKFNAK 133

Length = 176

>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 153 MAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMS 212
           +A V++ V L  E   ++A  + ++ G + V + + +DPS++ G  ++    G ++ID S
Sbjct: 202 VATVTTAVPLSDEQKQRLAAALSRIYG-RPVHLNSEVDPSVLGGMRVQV---GDEVIDGS 257

Query: 213 VKKQLEEIAAQL 224
           V  +LE +  +L
Sbjct: 258 VAGRLERLRRRL 269

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	100.0
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	100.0
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	100.0
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	100.0
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	100.0
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	100.0
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	100.0
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	100.0
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	100.0
PRK13431	180	F0F1 ATP synthase subunit delta; Provisional	99.96
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.65
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	98.98
PRK06669	281	fliH flagellar assembly protein H; Validated	97.88
PRK03963	198	V-type ATP synthase subunit E; Provisional	97.01
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	96.87
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.69
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	96.29
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	95.94
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	95.55
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	95.2
PRK01558	198	V-type ATP synthase subunit E; Provisional	95.04
PRK05687	246	fliH flagellar assembly protein H; Validated	94.27
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	94.02
PRK06328	223	type III secretion system protein; Validated	93.44
PRK01005	207	V-type ATP synthase subunit E; Provisional	93.29
PRK06937	204	type III secretion system protein; Reviewed	92.99
PRK01194	185	V-type ATP synthase subunit E; Provisional	91.47
PRK09098	233	type III secretion system protein HrpB; Validated	91.29
PRK13386	236	fliH flagellar assembly protein H; Provisional	90.11
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	88.79

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=5.9e-43  Score=301.11  Aligned_cols=175  Identities=27%  Similarity=0.400  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 024892           46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNI  124 (261)
Q Consensus        46 M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~l  124 (261)
                      |...+|++||+|||++|.+.+.+++|+++|..+.++++ +|+|+.||.||.++.++|.++++++|++ ++++.+.|||++
T Consensus         3 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~l   81 (179)
T PRK13436          3 LKNKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKI   81 (179)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence            44899999999999999999999999999999999997 7999999999999999999999999997 699999999999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecC
Q 024892          125 LIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKW  204 (261)
Q Consensus       125 Lien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~  204 (261)
                      |++|+|+.+|++|+++|.++++++.|+..|+|+||+|||++|+++|.+.|++++| ++++++++|||+|||||+|++   
T Consensus        82 l~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g-~~v~l~~~vDpslIGGi~i~~---  157 (179)
T PRK13436         82 LAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLN-KKVHLVNKIDPKLIAGIKIKV---  157 (179)
T ss_pred             HHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHC-CeEEEEeecCHHHcCceEEEE---
Confidence            9999999999999999999999999999999999999999999999999999999 799999999999999999999   


Q ss_pred             CCEEEeccHHHHHHHHHHHhc
Q 024892          205 GSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       205 gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      ||++||+||+++|++|++.|.
T Consensus       158 gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        158 DNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             CCEEeehhHHHHHHHHHHHHh
Confidence            899999999999999999886

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=7.1e-42  Score=295.33  Aligned_cols=173  Identities=23%  Similarity=0.376  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI  126 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi  126 (261)
                      .++|++||+|||+   +.+.+++|.++|..+.+++. +|+|+.||.||.++.++|.+++.+++++ ++++.+.|||++|+
T Consensus         4 ~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL~   79 (184)
T PRK13434          4 SGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVLL   79 (184)
T ss_pred             hhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            6899999999999   56899999999999999765 8999999999999999999999999976 69999999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892          127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS  206 (261)
Q Consensus       127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd  206 (261)
                      +|+|+.++++|+++|.++++++.|++.|+|+||.|||++|+++|.+.|++++| ++|.++++|||+|||||+|++   ||
T Consensus        80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g-~~v~l~~~vDpsLIGG~ii~i---gd  155 (184)
T PRK13434         80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFK-SEFILEVSEDKNLLGGFVVQF---ND  155 (184)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHC-CEeEEEeeeChHHcCceEEEE---CC
Confidence            99999999999999999999999999999999999999999999999999999 799999999999999999999   89


Q ss_pred             EEEeccHHHHHHHHHHHhccCC
Q 024892          207 KLIDMSVKKQLEEIAAQLDLGD  228 (261)
Q Consensus       207 ~viD~Svk~~L~~Lk~~L~~~~  228 (261)
                      ++||+|++++|++|++.|..+.
T Consensus       156 ~viD~Svk~~L~~l~~~l~~~~  177 (184)
T PRK13434        156 LKIEKSIASQLGEIKKAMLEKK  177 (184)
T ss_pred             EEEeHhHHHHHHHHHHHHHhcC
Confidence            9999999999999999998555

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=100.00  E-value=6.4e-41  Score=288.61  Aligned_cols=172  Identities=31%  Similarity=0.546  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI  126 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi  126 (261)
                      .++|++||+|||++|.|++.++.|.++|..+..+++ +|+|.++|.||.++.++|.+++.++|+. ..++++.|||.+|+
T Consensus         5 ~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~ll~   83 (178)
T COG0712           5 STVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRLLA   83 (178)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHHHH
Confidence            789999999999999999999999999999999999 5799999999999999999999999997 34599999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892          127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS  206 (261)
Q Consensus       127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd  206 (261)
                      +|+|+.++++|++.|..++++++|+..|+||||+||+++|+++|.+.|++++| +++.+.++||||||||++|++   ||
T Consensus        84 en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~-~~v~i~~~VD~sliGG~iI~v---gd  159 (178)
T COG0712          84 ENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG-KKVKLNNKIDPSLIGGLIIKV---GD  159 (178)
T ss_pred             HccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC-CCceEEeeeCHHHhCceEEEE---CC
Confidence            99999999999999999999999999999999999999999999999999999 899999999999999999999   89


Q ss_pred             EEEeccHHHHHHHHHHHh
Q 024892          207 KLIDMSVKKQLEEIAAQL  224 (261)
Q Consensus       207 ~viD~Svk~~L~~Lk~~L  224 (261)
                      .+||+|++++|++|+..|
T Consensus       160 ~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         160 EVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             EEEechHHHHHHHHHHhc
Confidence            999999999999999876

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=100.00  E-value=1.9e-38  Score=273.78  Aligned_cols=176  Identities=32%  Similarity=0.564  Sum_probs=170.3

Q ss_pred             hh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 024892           46 MS-ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLN  123 (261)
Q Consensus        46 M~-~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~  123 (261)
                      |. ..+|++||+|||++|.+.+.+++|.++|..+.++++ +++|+++|.||.++.++|.+++.++|++ ++++.+.|||+
T Consensus         3 ~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~   81 (184)
T CHL00119          3 PLVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLM   81 (184)
T ss_pred             chHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHH
Confidence            44 899999999999999999999999999999999996 8999999999999999999999999987 69999999999


Q ss_pred             HHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEec
Q 024892          124 ILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGK  203 (261)
Q Consensus       124 lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~  203 (261)
                      +|++|+|+.++++|+++|.++++++.|+..++|+||+||+++++++|.+.|++++|.+++.+.++|||+++||+++++  
T Consensus        82 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~ligGi~i~~--  159 (184)
T CHL00119         82 VLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIGGFLIKI--  159 (184)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhCcEEEEE--
Confidence            999999999999999999999999999999999999999999999999999999986689999999999999999999  


Q ss_pred             CCCEEEeccHHHHHHHHHHHhc
Q 024892          204 WGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       204 ~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                       |+++||+|++++|+++++.|.
T Consensus       160 -g~~~~D~Si~~~L~~l~~~l~  180 (184)
T CHL00119        160 -GSKVIDTSIKGQLKQLASHLD  180 (184)
T ss_pred             -CCEEEeHhHHHHHHHHHHHHH
Confidence             799999999999999999986

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=1.9e-38  Score=272.32  Aligned_cols=169  Identities=22%  Similarity=0.350  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 024892           46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNIL  125 (261)
Q Consensus        46 M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lL  125 (261)
                      |+..+|++||+|||++|. ++.+++|.++|..+..++++++|++||.||.++.++|.+++..++++  .++.+.|||++|
T Consensus         1 m~~~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~~~~l~~~l~~P~i~~~~K~~vi~~~~~~--~~~~~~nFL~vL   77 (176)
T PRK08474          1 MEELIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVDN--ANAKFQNFIKLL   77 (176)
T ss_pred             CchhhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHCChhHHHHHhCCCCCHHHHHHHHHHHHhc--cCHHHHHHHHHH
Confidence            888999999999999985 68999999999999999999999999999999999999999999986  589999999999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCC
Q 024892          126 IDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWG  205 (261)
Q Consensus       126 ien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~g  205 (261)
                      ++|+|+.+|++|+++|.+++++.+|+..|+|+||.|||++|+++|.+.|++++| ++|+++++|||  |||++|++   |
T Consensus        78 i~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g-~~v~l~~~vD~--IGG~ii~i---g  151 (176)
T PRK08474         78 AENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFN-AKIKLKQKKSD--YDGIKVEV---D  151 (176)
T ss_pred             HHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhC-CeEEEEEEEcC--CCCEEEEE---C
Confidence            999999999999999999999999999999999999999999999999999999 79999999999  99999999   8


Q ss_pred             CEEEeccHHHHHHHHHHHhc
Q 024892          206 SKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       206 d~viD~Svk~~L~~Lk~~L~  225 (261)
                      |++||+|++  |++|+.+|.
T Consensus       152 d~v~D~s~~--l~~~~~~~~  169 (176)
T PRK08474        152 DLGVEVSFS--KDRLKNQLI  169 (176)
T ss_pred             CEEEEeeee--HHHHHHHHH
Confidence            999999765  999999886

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=2.3e-38  Score=288.78  Aligned_cols=185  Identities=19%  Similarity=0.352  Sum_probs=179.9

Q ss_pred             CCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCC
Q 024892           36 PRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSAL  114 (261)
Q Consensus        36 ~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~  114 (261)
                      -+.||+..+-+.+.+..-+.+|||++|.+.+.+++|.+||..+..++. +|+|+.+|.||.++.++|.+++.++|++ ++
T Consensus        85 v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~-~~  163 (271)
T PRK13430         85 VRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG-KV  163 (271)
T ss_pred             HHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cC
Confidence            368999999999999999999999999999999999999999999987 8999999999999999999999999987 69


Q ss_pred             CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc
Q 024892          115 QPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV  194 (261)
Q Consensus       115 s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI  194 (261)
                      ++.+.||+.+|++++|+..+++|++.|.+++++++|+..++|+||.||+++|+++|.+.|++++| ++|+++++|||+||
T Consensus       164 ~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsLI  242 (271)
T PRK13430        164 TPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYG-RPVHLNSEVDPSVL  242 (271)
T ss_pred             CHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHC-CceEEEeeECcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999 79999999999999


Q ss_pred             eeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          195 AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       195 GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      |||+|++   ||++||+||+++|++|+++|.
T Consensus       243 GGivI~v---Gd~viD~Sv~~rL~~L~~~L~  270 (271)
T PRK13430        243 GGMRVQV---GDEVIDGSVAGRLERLRRRLA  270 (271)
T ss_pred             CcEEEEE---CCEEEehhHHHHHHHHHHHhc
Confidence            9999999   899999999999999999885

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=3e-38  Score=271.62  Aligned_cols=174  Identities=26%  Similarity=0.382  Sum_probs=164.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhc--CCCCHHHHHHHH
Q 024892           46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKS--SALQPLTGNFLN  123 (261)
Q Consensus        46 M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~--~~~s~~~~nFL~  123 (261)
                      |...+|++||+|||++|.+.+.+++|.++|..+.+++++  ++.||.||.++.++|.++++.+++.  ..+++.+.|||+
T Consensus         2 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~--~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~   79 (180)
T PRK13441          2 RYSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYES--AKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLN   79 (180)
T ss_pred             CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence            346899999999999999999999999999999999873  5789999999999999999999852  258999999999


Q ss_pred             HHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEec
Q 024892          124 ILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGK  203 (261)
Q Consensus       124 lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~  203 (261)
                      +|++|+|+.++++|++.|..+++++.|+..|+|+||.||+++++++|.+.|++++| +++++.++|||+|||||+|++  
T Consensus        80 vL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~-~~v~l~~~vD~sliGG~~i~i--  156 (180)
T PRK13441         80 LVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVL-RDPVFEETIDESLIAGAVVEF--  156 (180)
T ss_pred             HHHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHC-CcceEEeeeChHHhCcEEEEE--
Confidence            99999999999999999999999999999999999999999999999999999999 799999999999999999999  


Q ss_pred             CCCEEEeccHHHHHHHHHHHhc
Q 024892          204 WGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       204 ~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                       ||++||+|++++|++|+++|.
T Consensus       157 -g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        157 -EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             -CCEEEeHhHHHHHHHHHHHHh
Confidence             899999999999999999985

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=100.00  E-value=1.5e-38  Score=273.42  Aligned_cols=173  Identities=33%  Similarity=0.607  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892           50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA  128 (261)
Q Consensus        50 iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien  128 (261)
                      ++.+||.|||.+|..++++|.+..+|..+.++++ ||+|.+|+.||.++.+.|...++++.+..++.+.+.|||.+|+||
T Consensus        33 ~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~NflnlLaeN  112 (210)
T KOG1662|consen   33 LEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNFLNLLAEN  112 (210)
T ss_pred             ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHHHHHHHHHHc
Confidence            8899999999999999999999999999999998 899999999999999999999999999888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhC-CceeEEEEeECCCCceeEEEEEecCCCE
Q 024892          129 KRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTG-AKNVRIKTVIDPSLVAGFTIRYGKWGSK  207 (261)
Q Consensus       129 ~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g-~k~I~l~~~VDpsLIGG~iI~i~~~gd~  207 (261)
                      ||++.+.+|..+|..++++++|.+.|+|+||.||++.+.++|++.|++.+| ++++.++++|||||+||++|++   ||+
T Consensus       113 gRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVei---GdK  189 (210)
T KOG1662|consen  113 GRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVEI---GDK  189 (210)
T ss_pred             CchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhcceEEEE---cCe
Confidence            999999999999999999999999999999999999999999999999765 4789999999999999999999   899


Q ss_pred             EEeccHHHHHHHHHHHhc
Q 024892          208 LIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       208 viD~Svk~~L~~Lk~~L~  225 (261)
                      ++|+||+++++++.+.+.
T Consensus       190 ~vDmSI~tr~q~l~~ll~  207 (210)
T KOG1662|consen  190 YVDMSIKTRLQKLNKLLE  207 (210)
T ss_pred             eEeeeHHHHHHHHHHHhh
Confidence            999999999999998664

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=7.7e-38  Score=268.58  Aligned_cols=176  Identities=28%  Similarity=0.534  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI  126 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi  126 (261)
                      ..++++||+|||++|.++++++.|.++|..+..+++ +|+|+.+|.||.++.++|.+++++++++.++++.+.|||++|+
T Consensus         4 ~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~   83 (181)
T PRK13429          4 NAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLA   83 (181)
T ss_pred             chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            689999999999999999999999999999999996 7999999999999999999999999987459999999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892          127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS  206 (261)
Q Consensus       127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd  206 (261)
                      +++|+.++++|++.|.++++++.++..++|+||+||+++++++|.+.|++++| +++.+.++|||+|+||++|++   |+
T Consensus        84 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~-~~~~~~~~vd~sligG~~i~~---~~  159 (181)
T PRK13429         84 DRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG-KKVELDTAVDPSLIGGVVVKI---GD  159 (181)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC-CEEEEEeeeChhhhCceEEEE---CC
Confidence            99999999999999999999999999999999999999999999999999999 799999999999999999999   79


Q ss_pred             EEEeccHHHHHHHHHHHhccC
Q 024892          207 KLIDMSVKKQLEEIAAQLDLG  227 (261)
Q Consensus       207 ~viD~Svk~~L~~Lk~~L~~~  227 (261)
                      ++||+|++++|+++++.|..|
T Consensus       160 ~~iD~Si~~~L~~l~~~l~~~  180 (181)
T PRK13429        160 KVLDASVRTQLRRLKETLKKG  180 (181)
T ss_pred             EEEehhHHHHHHHHHHHHhcC
Confidence            999999999999999999755

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=100.00  E-value=5.5e-38  Score=267.81  Aligned_cols=171  Identities=30%  Similarity=0.504  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892           50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA  128 (261)
Q Consensus        50 iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien  128 (261)
                      +|++||+|||++|.+++.++.|+++|..+.++++ +|+|++||.||.++.++|.++++++|++ ++++.+.|||++|+++
T Consensus         1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~   79 (172)
T TIGR01145         1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN   79 (172)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence            5789999999999999999999999999999998 6999999999999999999999999987 6899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEE
Q 024892          129 KRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKL  208 (261)
Q Consensus       129 ~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~v  208 (261)
                      +|+.++++|+.+|.++++++.|+..++|+||+||+++++++|.+.|++++|.+++.+.+++||+||||+++++   |+++
T Consensus        80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~v~~~~~vd~~ligGi~i~~---~~~~  156 (172)
T TIGR01145        80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAKVKLNCKVDKDLIGGVIIRI---GDRV  156 (172)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHhCCCeEEEEEeECHHHhCceEEEE---CCEE
Confidence            9999999999999999999999999999999999999999999999999994499999999999999999999   7999


Q ss_pred             EeccHHHHHHHHHHHh
Q 024892          209 IDMSVKKQLEEIAAQL  224 (261)
Q Consensus       209 iD~Svk~~L~~Lk~~L  224 (261)
                      ||+|++++|++|+++|
T Consensus       157 iD~Si~~~L~~l~~~l  172 (172)
T TIGR01145       157 IDGSVRGQLKRLSRQL  172 (172)
T ss_pred             EehhHHHHHHHHHhhC
Confidence            9999999999999875

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=2.4e-37  Score=299.11  Aligned_cols=186  Identities=17%  Similarity=0.306  Sum_probs=179.5

Q ss_pred             CCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcC-C
Q 024892           36 PRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSS-A  113 (261)
Q Consensus        36 ~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~-~  113 (261)
                      -+.||++..-+.+.+...|++|||++|.+.+.++.|.++|..+..++. +|+|+.+|.||.++.++|.+++.++|++. +
T Consensus       257 ~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~  336 (445)
T PRK13428        257 VSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGAST  336 (445)
T ss_pred             HhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhcccc
Confidence            368999999999999999999999999999999999999999999887 89999999999999999999999999863 5


Q ss_pred             CCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCC
Q 024892          114 LQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL  193 (261)
Q Consensus       114 ~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsL  193 (261)
                      +++.+.|||.+|++++|+..+++|+..|.+++++++|+..++||||+|||++|+++|.+.|+++|| ++|+++++|||+|
T Consensus       337 ~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsL  415 (445)
T PRK13428        337 VNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG-RPVSVQLHIDPEL  415 (445)
T ss_pred             CCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC-CceEEEeeeCchh
Confidence            899999999999999999999999999999999999999999999999999999999999999999 7999999999999


Q ss_pred             ceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          194 VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       194 IGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      ||||+|++   ||.|||+||+++|++|+++|-
T Consensus       416 iGGivI~v---Gd~viD~Sv~~rL~~l~~~l~  444 (445)
T PRK13428        416 LGGLSIAV---GDEVIDGTLSSRLAAAEAQLP  444 (445)
T ss_pred             hCceEEEE---CCEEeehhHHHHHHHHHhhCC
Confidence            99999999   899999999999999999873

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=4.5e-36  Score=256.78  Aligned_cols=171  Identities=28%  Similarity=0.494  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI  126 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi  126 (261)
                      ..++++||+|||++|.+++.++.|+++|.. .+++. +|+|+.||.+|.++.++|.++++++|++  .++.+.|||.+|+
T Consensus         5 ~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l~   81 (177)
T PRK05758          5 STVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVLA   81 (177)
T ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHH
Confidence            789999999999999999999999999999 76665 8999999999999999999999999987  3999999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892          127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS  206 (261)
Q Consensus       127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd  206 (261)
                      +++|+.++++|+.+|.+++++..++..++|+||+||+++++++|.+.|++.+| +++.+.++|||+|+||++|++   |+
T Consensus        82 ~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~l~~~vd~~ligG~~i~~---~~  157 (177)
T PRK05758         82 ENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLG-RKVKLNEKVDPSLIGGVIIKV---GD  157 (177)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHC-CeeEEEeeEChHHhCceEEEE---CC
Confidence            99999999999999999999999999999999999999999999999999999 689999999999999999999   79


Q ss_pred             EEEeccHHHHHHHHHHHhc
Q 024892          207 KLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       207 ~viD~Svk~~L~~Lk~~L~  225 (261)
                      +++|+|++++|+++++.|.
T Consensus       158 ~~~d~Si~~~L~~l~~~l~  176 (177)
T PRK05758        158 RVIDGSVRGKLERLKDALK  176 (177)
T ss_pred             EEeehhHHHHHHHHHHHhc
Confidence            9999999999999999885

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=7.5e-41  Score=284.42  Aligned_cols=171  Identities=36%  Similarity=0.599  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892           50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA  128 (261)
Q Consensus        50 iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien  128 (261)
                      ||++||+|||++|.+.+.++.|.++|+.+..++. +|+|+.||.+|.+|.++|.+++.++|++ ++++.+.|||++|+++
T Consensus         1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~   79 (172)
T PF00213_consen    1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN   79 (172)
T ss_dssp             HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence            7999999999999999999999999999988876 8999999999999999999999999987 7899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEE
Q 024892          129 KRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKL  208 (261)
Q Consensus       129 ~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~v  208 (261)
                      +|+.++++|+++|.++++++.++..++|+||+||+++|+++|++.+++++|.+++.++++|||+|||||+|++   |+.+
T Consensus        80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~~i~~---~~~~  156 (172)
T PF00213_consen   80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGFIIEV---GDKV  156 (172)
T ss_dssp             T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTTTT----------------------------
T ss_pred             CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEEEEEE---CCEE
Confidence            9999999999999999999999999999999999999999999999999994489999999999999999999   7999


Q ss_pred             EeccHHHHHHHHHHHh
Q 024892          209 IDMSVKKQLEEIAAQL  224 (261)
Q Consensus       209 iD~Svk~~L~~Lk~~L  224 (261)
                      ||+|++++|++|+++|
T Consensus       157 iD~Sv~~~L~~l~~~L  172 (172)
T PF00213_consen  157 IDASVKSRLEQLKKEL  172 (172)
T ss_dssp             TTTTTTTTTTTT-TTT
T ss_pred             EehhHHHHHHHHHhcC
Confidence            9999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK13431 F0F1 ATP synthase subunit delta; Provisional

Probab=99.96  E-value=1.5e-27  Score=205.68  Aligned_cols=168  Identities=18%  Similarity=0.237  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKAN-NTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICK----SSALQPLTGNFL  122 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~-~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~----~~~~s~~~~nFL  122 (261)
                      ..||+|||+|||++|.+. +.++.++++|..+.++|.+++|+.++.||.+  ++|.+++.++++    + .+++.+.|||
T Consensus         5 g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~~el~~il~~P~~--~~Kkk~l~~l~~~a~~~-~~~~~~~NFl   81 (180)
T PRK13431          5 KVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKLHKLNQVLAHVSL--KVKKEVVFEILEKITSI-KACSVLKPVM   81 (180)
T ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccHHHHHHHhCccH--HHHHHHHHHHHhhhccc-cccHHHHHHH
Confidence            469999999999999999 9999999999999999998899999999999  788888888887    4 5899999999


Q ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEe
Q 024892          123 NILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYG  202 (261)
Q Consensus       123 ~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~  202 (261)
                      ++|++|+|+.+||+|+..   ++++..|++.++|+||+||+++++++|.+.|++++| ++|.+.+.+++  .-|++|.++
T Consensus        82 ~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~g-~kV~L~~~~~~--~~gik~~v~  155 (180)
T PRK13431         82 EVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARFN-APVEIAQDTWS--KKGVSLSVS  155 (180)
T ss_pred             HHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHHC-CeEEEEeeccC--CCceEEEEe
Confidence            999999999999999994   899999999999999999999999999999999999 68999998877  599999998


Q ss_pred             cCCCEEEeccHHHHHHHHHHHhc
Q 024892          203 KWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       203 ~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      | =+..+-+|...-.+++.+++.
T Consensus       156 ~-lg~ei~fs~~~~~~~~~~~~~  177 (180)
T PRK13431        156 S-LDLEIGFSKEDILKKIEKQVI  177 (180)
T ss_pred             c-CceEEEeeHHHHHHHHHHHHh
Confidence            7 568899998887787777764

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.65  E-value=1.7e-15  Score=136.53  Aligned_cols=98  Identities=17%  Similarity=0.307  Sum_probs=77.9

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEE
Q 024892          120 NFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTI  199 (261)
Q Consensus       120 nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI  199 (261)
                      .++.-.++.  +..+|.-...+..-.... +...++|+||+||+++++++|.+.|++.+| +++.+.+.|||+|||||+|
T Consensus       148 ~lid~~i~~--l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~~~~~vdp~ligGi~l  223 (246)
T TIGR03321       148 RMVDVFVQR--LRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRDTIRETLG-PEIRLRFQTEPDLIGGIEL  223 (246)
T ss_pred             HHHHHHHHH--hhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHHHHHHHHC-CCeeEEeeeCchhcCceEE
Confidence            444444422  444444433333223333 335699999999999999999999999999 7999999999999999999


Q ss_pred             EEecCCCEEEeccHHHHHHHHHHHh
Q 024892          200 RYGKWGSKLIDMSVKKQLEEIAAQL  224 (261)
Q Consensus       200 ~i~~~gd~viD~Svk~~L~~Lk~~L  224 (261)
                      ++   ||++||+||+++|++|++++
T Consensus       224 ~~---g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       224 TA---GGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             EE---CCEEEechHHHHHHHHHhhc
Confidence            99   89999999999999999876

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=98.98  E-value=7.4e-09  Score=93.87  Aligned_cols=73  Identities=22%  Similarity=0.326  Sum_probs=68.3

Q ss_pred             cCceeEEEEeecCCCHHHHHHHHHHHHH-HhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          149 TNTEMAVVSSVVKLESEHLAQIAKQVQK-LTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k-~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      .+...+.|+||+||++++.++|.+.|.. .+| ..+.+.+.+||+||+|+.+++   |+..+.||+.++|+.|...+.
T Consensus       173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~-~~~~~~f~~~p~li~Giel~~---~~~~i~ws~~~yl~~l~~~~~  246 (250)
T PRK14474        173 TTPEMLRIRTSFELSQDLRAQILESLHQTHLI-PGTDIHFVTSPELICGIELKT---EGYKIAWTLAEYLDALESQLT  246 (250)
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCceeeecCcccccCeEEec---CCceEeccHHHHHHHHHHHHH
Confidence            3556699999999999999999999999 998 689999999999999999999   799999999999999999886

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=97.88  E-value=0.00016  Score=66.47  Aligned_cols=101  Identities=13%  Similarity=0.155  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-e
Q 024892          117 LTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-A  195 (261)
Q Consensus       117 ~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-G  195 (261)
                      ...+++..+.++++...++.|-..+..+.+    ...++|+. .|=+-+........+...++ ....+.+..||++- |
T Consensus       175 iaekvi~~~~~~~~~~i~~li~~al~~l~~----~~~i~I~V-~p~d~~~l~~~~~~l~~~l~-~~~~i~I~~D~~l~~G  248 (281)
T PRK06669        175 IAKKVIKEISENSKEIALALVKELLKEVKD----ATDITIRV-NPEDYEYVKEQKDELISLLD-NEEHLKIYEDDAISKG  248 (281)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHcCc----CCcEEEEE-CHHHHHHHHHhHHHHHHhcC-CCCCeEEEECCCCCCC
Confidence            455888888888888877777777776533    22344443 33333333333444445566 45677788887774 9


Q ss_pred             eEEEEEecCCCEEEeccHHHHHHHHHHHhcc
Q 024892          196 GFTIRYGKWGSKLIDMSVKKQLEEIAAQLDL  226 (261)
Q Consensus       196 G~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~  226 (261)
                      |++|+.   ++-.||+||.++|++|++.|..
T Consensus       249 gcvIet---~~G~IDasi~tqLe~l~~~L~e  276 (281)
T PRK06669        249 GCVIET---DFGNIDARIDTQLKQLKEKLLE  276 (281)
T ss_pred             CeEEEc---CCCeeeccHHHHHHHHHHHHHh
Confidence            999999   5778999999999999999863

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=97.01  E-value=0.023  Score=49.24  Aligned_cols=63  Identities=13%  Similarity=0.230  Sum_probs=43.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          160 VKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       160 ~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      .|=|.+-.+.....+.+.+|  .+.+...-++..+|||+|...| |..++|+|+.++|+.++..+.
T Consensus       127 ~~~D~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~GGvil~s~~-g~i~~dnT~e~~l~~~~~~~~  189 (198)
T PRK03963        127 NERTLKLIDSRLEEIRDELG--DVEIELGEPIETIGGVIVETKD-GTIRVDNTFEARMERLESELR  189 (198)
T ss_pred             ccccHHHHHHHHHHHHHHhC--CeEEEECCCCCccceEEEEeCC-CCEEEeCcHHHHHHHHHHHhH
Confidence            44444444444455556666  3444433245679999998654 888999999999999998876

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=96.87  E-value=0.013  Score=53.86  Aligned_cols=61  Identities=13%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             CHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892           67 TLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA  128 (261)
Q Consensus        67 ~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien  128 (261)
                      ....+.+||..+..++. ++.++..|++|..|.+.|..++..+|++ ++++.+.+++..++.+
T Consensus        26 ~~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~   87 (271)
T PRK13430         26 AAAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQ   87 (271)
T ss_pred             hHHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHh
Confidence            56789999999999998 8999999999999999999999999998 7999999999988876

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.69  E-value=0.018  Score=49.62  Aligned_cols=104  Identities=11%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHH
Q 024892           98 IEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKL  177 (261)
Q Consensus        98 ~eeK~~lL~~l~~~~~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~  177 (261)
                      ...|..++..+|..  ....+.++-    ...+..+|..++...        ..-.+.|++ .|-+..-.   .+.+. .
T Consensus        75 L~~r~~~l~~v~~~--a~~kL~~~~----~~~y~~~l~~li~~~--------~~~~~~i~~-~~~D~~~~---~~~~~-~  135 (188)
T PRK02292         75 LNARKEVLEDVRNQ--VEDEIASLD----GDKREELTKSLLDAA--------DADGVRVYS-RKDDEDLV---KSLLS-D  135 (188)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHhcc----hhhHHHHHHHHHHhc--------CCCCeEEEE-ccccHHHH---HHHHH-h
Confidence            34667778887754  223333322    233344444444433        222333433 34443333   33332 2


Q ss_pred             hCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          178 TGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       178 ~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      ++  .+.+  .-+++++|||+|...+ |..++|+|+.++|+.+...+.
T Consensus       136 ~~--~~~~--~~~~~~~GGvil~~~~-g~I~~dnT~~~rl~~~~~~~~  178 (188)
T PRK02292        136 YD--GLEY--AGNIDCLGGVVVESED-GRVRVNNTFDSILEDVWEDNL  178 (188)
T ss_pred             cc--cCee--CCCCCCCceEEEEecC-CceEEeccHHHHHHHHHHHhh
Confidence            33  1333  3468899999999765 889999999999999998876

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=96.29  E-value=0.11  Score=47.19  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEecc
Q 024892          134 VKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMS  212 (261)
Q Consensus       134 L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~S  212 (261)
                      +..++..+...+.   +.-.++|+. +|-+-+........+...++ ....+.+..||+|- ||++|+.   ++=.+|+|
T Consensus       161 i~~lv~~al~~l~---~~~~i~I~v-~p~d~~~v~~~~~~l~~~~~-~~~~i~i~~D~~l~~GgcvIEt---~~G~iDas  232 (255)
T TIGR03825       161 FQALVRQVLSEVR---EFDEVSIYV-HPHWYERVAAQKDELQSILP-ACEHLAVYPDEKLPDGGCYVET---NFGRIDAS  232 (255)
T ss_pred             HHHHHHHHHHhcc---CCCcEEEEE-CHHHHHHHHHhHHHHHhhcC-CCCceEEEeCCCCCCCCeEEEc---CCceEEee
Confidence            4455555544443   233444442 23233333333455556666 45678889999997 9999999   45679999


Q ss_pred             HHHHHHHHHHHhc
Q 024892          213 VKKQLEEIAAQLD  225 (261)
Q Consensus       213 vk~~L~~Lk~~L~  225 (261)
                      +.++|++|++.|.
T Consensus       233 ldtqLe~l~~~l~  245 (255)
T TIGR03825       233 VDTQLEQLKEKLL  245 (255)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=95.94  E-value=0.11  Score=50.95  Aligned_cols=104  Identities=16%  Similarity=0.238  Sum_probs=73.9

Q ss_pred             CCCcccccCCCcccCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCC
Q 024892           17 FPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPT   95 (261)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~   95 (261)
                      +|.+-+...-|+++.      -+|+|-. .-..+..+....+ ..+ ....+..+.+||..+..++. ++.++..|++|.
T Consensus       157 ~~~~~~~~~~~~~~~------m~~~sr~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~el~~v~~~l~~~~~lrr~l~d~~  227 (445)
T PRK13428        157 MAPSTADVDYPLLAK------MRSASRR-ALASLVDRFDSVA-ADL-DNQALTTLADELVSVAKLLDREPVLTKHLTEPA  227 (445)
T ss_pred             cCCCchhhcCchhhh------hhHhhHH-HHHHHHHHHHHHh-ccC-CchhHHHHHHHHHHHHHHHcccHHHHHHcCCCC
Confidence            555666666666533      2333222 1123333333333 111 11346789999999999998 899999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC
Q 024892           96 IDIEKKREMVDEICKSSALQPLTGNFLNILIDAKR  130 (261)
Q Consensus        96 i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien~R  130 (261)
                      -+.+.|..++..+|++ ++++.+..++.-++...+
T Consensus       228 ~~~~~k~~l~~~l~~~-~~~~~~~~~~~~~~~~rw  261 (445)
T PRK13428        228 EDAAPKIRLVERLFSG-KVGAPTLEVLRTAVSQRW  261 (445)
T ss_pred             CChhhHHHHHHHHhCc-CCCHHHHHHHHHHHhCcc
Confidence            9999999999999998 799999999888876544

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.55  E-value=0.015  Score=49.86  Aligned_cols=114  Identities=18%  Similarity=0.304  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHH---H
Q 024892           99 EKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQV---Q  175 (261)
Q Consensus        99 eeK~~lL~~l~~~~~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L---~  175 (261)
                      +.|.++++.++..      +..=|.-+....  .....++..+........+.-.+.|+.    .++....+.+.+   .
T Consensus        68 ~~k~~~i~~v~~~------~~~~L~~~~~~~--~~Y~~~L~~li~~~~~~~~~~~~~v~~----~~~D~~~~~~~l~~~~  135 (198)
T PF01991_consen   68 EAKQEIIDEVFEE------VKEKLKSFSKDP--DDYKKFLKKLIEEAAEKLGEGEVIVYV----NKKDLELVKEILKRIK  135 (198)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHCTTCCC---THHHHHHHHHHHHHHCCTTSCEEEEE----CCHHHHCCHCCHCCCC
T ss_pred             HHHHHHHHHHHHH------HHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCceEEec----ccchHHHHHHHHHHHH
Confidence            3566666666643      122222222222  134455555555444444444455542    333444444332   2


Q ss_pred             HHhCC--ceeEEEEeECC----CCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          176 KLTGA--KNVRIKTVIDP----SLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       176 k~~g~--k~I~l~~~VDp----sLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      +.++.  +...+...+|+    +++|||+|...| |..++|+|+.++|+.+...+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~GG~il~~~d-g~i~vd~T~e~~l~~~~~~~~  190 (198)
T PF01991_consen  136 KELKSKAGKDSVEVSVDSDYLIDIIGGFILESED-GKIRVDNTFESRLERLKEEIR  190 (198)
T ss_dssp             CCHCCCSSTTTEEEEE-T---BSSSSEEEEECSS-SSCEEEEEHHHHHHHCHHHHH
T ss_pred             HHHHHHhCCCcceeecCccccCCccceEEEEECC-CCEEEECCHHHHHHHHHHHhH
Confidence            23331  01224556665    899999999875 899999999999999888765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=95.20  E-value=0.45  Score=37.62  Aligned_cols=62  Identities=21%  Similarity=0.355  Sum_probs=46.4

Q ss_pred             CceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHH
Q 024892          150 NTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEI  220 (261)
Q Consensus       150 g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~L  220 (261)
                      +...++|+    ++++..+.+.+.+.....  ...++...||+|- ||++|+.   ++-.+|+|+.+||+++
T Consensus        66 ~~~~v~I~----v~p~d~~~l~~~~~~~~~--~~~~~l~~D~~l~~G~c~iet---~~g~iD~~i~~ql~~l  128 (128)
T PF02108_consen   66 DEEKVTIR----VHPDDYEALEELLEDELP--ELGWELVADPSLAPGDCRIET---EDGIIDASIETQLEAL  128 (128)
T ss_pred             cCCCeEEE----ECHHHHHHHHHHHHHHHh--hcCCEEEecCCCCCCCEEEEE---CCeeEEeCHHHHHhcC
Confidence            34445555    578888889888875543  2334888899964 6799999   6889999999999864

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=95.04  E-value=0.4  Score=41.98  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=44.3

Q ss_pred             CCHHHHHHHHH----HHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhcc
Q 024892          162 LESEHLAQIAK----QVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDL  226 (261)
Q Consensus       162 Lseeq~~~L~~----~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~  226 (261)
                      ++++....|.+    .+.+.++ +.|.+..  +..++|||+|+..| |+..+|+|.-+..+-|+..|.-
T Consensus       125 ~~~~D~~~l~~~~~~~~~~~l~-~gi~i~~--~~~~~gG~iv~~~d-g~i~id~T~ea~~~~l~~~L~~  189 (198)
T PRK01558        125 LNESDLSELESILRAALGNKLK-KGIELKP--FKGISKGFKIQQKD-GSLYYDFSAEAIADILFSYLNP  189 (198)
T ss_pred             ECHHHHHHhHHHHHHHHHHHhc-CCeEEcc--cCCcccceEEEEcC-CCeEEeCcHHHHHHHHHHHhcH
Confidence            34555555444    4444555 3455544  56699999999876 9999999999999999998863

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=94.27  E-value=1.5  Score=39.40  Aligned_cols=61  Identities=20%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHhccC
Q 024892          162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLG  227 (261)
Q Consensus       162 Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~  227 (261)
                      +.++..+.|++.+.....  .-.+....||+|- ||++|+.   ++-.||+|+.++++++.+.|..+
T Consensus       182 v~P~D~~~v~~~~~~~~~--~~~~~l~~D~~l~~Ggc~iet---~~g~vDa~l~~r~~~l~~~l~~~  243 (246)
T PRK05687        182 VNPDDLELVEQLLGAELS--LHGWRLLADPSLHRGGCRISA---EEGDVDASLETRWQEVCRLLAPG  243 (246)
T ss_pred             ECHHHHHHHHHHHhhHHH--hCCeEEEeCCCcCCCCeEEEe---CCCceeccHHHHHHHHHHHHhcc
Confidence            677888888888775443  2347788899986 7899999   56789999999999999998744

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=94.02  E-value=0.69  Score=40.64  Aligned_cols=96  Identities=10%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCcee
Q 024892          117 LTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAG  196 (261)
Q Consensus       117 ~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG  196 (261)
                      .+..-|.-+....+...|...+.    -.......-.+.|++..    .....+.+.+..  +  .+........+.+||
T Consensus        89 ~~~e~L~~i~~~~~~~~l~~ll~----~~~~~~~~~~~iV~~~e----~d~~~v~~~~~~--~--~~~~~~~~~~d~~GG  156 (194)
T COG1390          89 AVEEKLRNIASDPEYESLQELLI----EALEKLLGGELVVYLNE----KDKALVEQILRE--L--KIGVELGEGIDIIGG  156 (194)
T ss_pred             HHHHHHHcCcCCcchHHHHHHHH----HHHHhcCCCCeEEEeCc----ccHHHHHHHHhh--c--ccchhccccCCCcce
Confidence            34444555556666555222222    22222223333355432    233334443332  1  233333334678999


Q ss_pred             EEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          197 FTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       197 ~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      ++++..| |...+|.|+.+.|+.+...+.
T Consensus       157 vvv~~~d-G~i~~dnt~~sil~~~~e~~~  184 (194)
T COG1390         157 VVVESRD-GKIRLDNTFESILERVLEELL  184 (194)
T ss_pred             EEEEeCC-CceeecCcHHHHHHHHHHHHH
Confidence            9999987 999999999999999988775

>PRK06328 type III secretion system protein; Validated

Probab=93.44  E-value=0.97  Score=40.44  Aligned_cols=67  Identities=13%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             ceeEEEEeecCCCHHHHHHHHHH---HHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          151 TEMAVVSSVVKLESEHLAQIAKQ---VQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       151 ~~~~~VtSA~~Lseeq~~~L~~~---L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      ...++|+    +++++.+.+.+.   +...++ ....+....||+|- ||.+|+.   +.-.||+|+.++|+.+++.|.
T Consensus       131 ~~~v~I~----VnP~D~~~v~~~~~~l~~~~~-~~~~~~I~~D~~L~~GgCiIET---~~G~VDasle~ql~~l~~al~  201 (223)
T PRK06328        131 HKRIIIH----VNPKDLAIVEKSRPELKKIVE-YADSLIISPKADVTPGGCIIET---EAGIINAQLDVQLAALEKAFS  201 (223)
T ss_pred             CCceEEE----ECHHHHHHHHHHHHHHHHhcc-CCCceEEEeCCCCCCCCeEEEe---CCceEEecHHHHHHHHHHHHH
Confidence            3445555    566666666555   444555 34578899999985 6699999   577899999999999999886

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=93.29  E-value=5.6  Score=35.30  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=41.0

Q ss_pred             CCHHHHHH-HHHHHHHHh-CCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhcc
Q 024892          162 LESEHLAQ-IAKQVQKLT-GAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDL  226 (261)
Q Consensus       162 Lseeq~~~-L~~~L~k~~-g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~  226 (261)
                      .+++..+. +...+.+.+ . +.|.+...     .|||+|+..| |+..+|+|-.+.++.+...+..
T Consensus       139 ~~~~~~~~~~~~~~~~~l~~-~gv~~~~~-----~gG~~v~~~d-g~~~vd~t~d~i~~~~~~~l~~  198 (207)
T PRK01005        139 VSARAVNELLGKEVTKKLKE-KGVSVGSF-----VGGAQLKVEE-KNWVLDLSSQTLLDLLTRYLQK  198 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHHH-cCeEEecc-----CCceEEEecC-CeeEEeCcHHHHHHHHHHHhhH
Confidence            35554444 333434444 3 34555542     5999999987 9999999999999999998873

>PRK06937 type III secretion system protein; Reviewed

Probab=92.99  E-value=5.8  Score=34.65  Aligned_cols=69  Identities=23%  Similarity=0.342  Sum_probs=51.0

Q ss_pred             cCceeEEEEeecCCCHHHHHHHHHHHHHH---hCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHh
Q 024892          149 TNTEMAVVSSVVKLESEHLAQIAKQVQKL---TGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQL  224 (261)
Q Consensus       149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k~---~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L  224 (261)
                      .+...++|+    +++++.+.+.+.+...   ++ ..-.+....||+|- ||.+|+.   ++=++|+|+.++|+.|++.|
T Consensus       128 ~~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~-~~~~l~i~~D~~L~~Ggc~iET---~~G~vDasl~tql~~l~~al  199 (204)
T PRK06937        128 SNQKQVVVR----VNPDQAAAVREQIAKVLKDFP-EVGYLEVVADARLDQGGCILET---EVGIIDASLDGQLEALEQAF  199 (204)
T ss_pred             ccCCeEEEE----ECHHHHHHHHHHHHHHHHhCC-CCccEEEEeCCCCCCCCeEEec---CCceEEccHHHHHHHHHHHH
Confidence            344455555    5667777777765543   33 23458888999975 7799999   56679999999999999988


Q ss_pred             c
Q 024892          225 D  225 (261)
Q Consensus       225 ~  225 (261)
                      .
T Consensus       200 ~  200 (204)
T PRK06937        200 H  200 (204)
T ss_pred             H
Confidence            6

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=91.47  E-value=1.8  Score=37.54  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             CCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          190 DPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       190 DpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      +++++|||+|...| |...+|+|+...++++...+.
T Consensus       142 ~~~~~GGvil~s~d-G~I~ld~~l~~~~~~~~~~iR  176 (185)
T PRK01194        142 DIDPYGGILAYSRD-GKRELDLRLSSIFENILEDLK  176 (185)
T ss_pred             CccccccEEEEeCC-CcEEehhhHHHHHHHhHHHHH
Confidence            67899999999665 889999999999998877665

>PRK09098 type III secretion system protein HrpB; Validated

Probab=91.29  E-value=3.1  Score=37.54  Aligned_cols=90  Identities=19%  Similarity=0.314  Sum_probs=59.9

Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHH---HhCCceeEEEEeECCCCc-eeEEEE
Q 024892          125 LIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQK---LTGAKNVRIKTVIDPSLV-AGFTIR  200 (261)
Q Consensus       125 Lien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k---~~g~k~I~l~~~VDpsLI-GG~iI~  200 (261)
                      +.+.+.-.++..+.+....++.   +.-.++|.    ++++..+.+...+..   ..| ....+...-||+|- ||.+|+
T Consensus       127 v~~~d~~~ll~~v~~al~~~~~---~~~~v~Ir----V~P~D~~~v~~~~~~~~~~~g-~~~~l~Iv~Dp~L~~GgCviE  198 (233)
T PRK09098        127 VLGEDRAALFARAAQTLERVVD---GASYLTVR----VHPADLDAARAAFGAAAAAGG-RNVPVEVVGDPRLAPGACVCE  198 (233)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhc---cCCcEEEE----ECHHHHHHHHHHHHHHHHhcC-CCcceEEEeCCCCCCCCeEEE
Confidence            3333444444444444444433   33334444    456666666665544   355 46788999999996 669999


Q ss_pred             EecCCCEEEeccHHHHHHHHHHHhc
Q 024892          201 YGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       201 i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      .   ++=+||+|+.++|+.|++.|.
T Consensus       199 T---~~G~IDasl~~ql~~L~~al~  220 (233)
T PRK09098        199 W---DFGVFDASLDTQLRALRRALA  220 (233)
T ss_pred             e---CCCeEecCHHHHHHHHHHHHH
Confidence            9   577999999999999999886

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=90.11  E-value=13  Score=33.54  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHHHhCCceeEEEEeECCCC-ceeEEEEEecCCCEEEeccHHHHHHHHHHHhccCC
Q 024892          162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL-VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGD  228 (261)
Q Consensus       162 Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsL-IGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~~  228 (261)
                      ++++..+.|.+.+....    -.+....||+| -||.+|+.   ++-.+|+|+.+||+.+-..|....
T Consensus       169 vnP~D~~~l~~~~~e~~----~~~~l~~D~~l~~GgC~Iet---~~g~iDa~ietRl~~~~~~l~~~l  229 (236)
T PRK13386        169 LNPEEFGRLKDLAPEKV----QAWGLVADPSLSAGECRIVT---DTSEADAGCEHRLDACMDAVKEHL  229 (236)
T ss_pred             ECHHHHHHHHHhhhccc----cCeEEEeCCCcCCCCEEEEe---CCceEeeCHHHHHHHHHHHHHHhc
Confidence            67888888887654422    24678889998 49999999   678999999999999888877544

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=88.79  E-value=3.6  Score=37.11  Aligned_cols=62  Identities=24%  Similarity=0.290  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCc-eeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHhccC
Q 024892          162 LESEHLAQIAKQVQKLTGAK-NVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLG  227 (261)
Q Consensus       162 Lseeq~~~L~~~L~k~~g~k-~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~  227 (261)
                      +..++.+.|.+.+....+.. .. ++..-||+|- ||.+|+.   +.=.||+|+.+||.+|++.+...
T Consensus       164 VnP~d~e~i~~~~~~~~~~~~~~-l~l~~D~~l~~GgC~IeT---e~G~iDasld~ql~~L~~~~~~~  227 (234)
T COG1317         164 VNPDDLEIIRQQLDEELSLLGWR-LELVADPALSPGGCIIET---EFGIIDASLDTQLAALKRALLES  227 (234)
T ss_pred             ECHHHHHHHHHHHHHHHhhcchh-eeeccCCCCCCCCeEEEe---cCccccccHHHHHHHHHHHHHhh
Confidence            46677777777775333211 22 7788899884 8999999   46679999999999999998744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
2wss_S	190	The Structure Of The Membrane Extrinsic Region Of B		3e-07
2bo5_A	120	Bovine Oligomycin Sensitivity Conferral Protein N-T		8e-04

>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 190

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 54  YAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSA 113
           YA AL   A   N LE    ++ ++ +I  E +     +NP +    K + + +      
Sbjct: 18  YATALYSAASKQNKLEQVEKELLRVGQILKEPKXAASLLNPYVKRSVKVKSLSDXTAKEK 77
Query: 114 LQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQ 173
             PLT N +N+L +  R+     ++  F    +         V++   L+   L ++ K 
Sbjct: 78  FSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRGEVPCTVTTASALDETTLTEL-KT 136
Query: 174 VQK--LTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
           V K  L+  + ++++  IDPS+  G  +R G+   K +D S K ++++++
Sbjct: 137 VLKSFLSKGQVLKLEVKIDPSIXGGXIVRIGE---KYVDXSAKTKIQKLS 183

>pdb|2BO5|A Chain A, Bovine Oligomycin Sensitivity Conferral Protein N-Terminal Domain Length = 120

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 54  YAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSA 113
           YA AL   A   N LE    ++ ++ +I  E ++    +NP +    K + + ++     
Sbjct: 18  YATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEK 77
Query: 114 LQPLTGNFLNILIDAKRVDVVKDIVKEF 141
             PLT N +N+L +  R+     ++  F
Sbjct: 78  FSPLTSNLINLLAENGRLTNTPAVISAF 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	9e-43
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	2e-24

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A Length = 190

 Score =  143 bits (362), Expect = 9e-43
 Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 48  ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDE 107
             +   YA AL   A   N LE    ++ ++ +I  E ++    +NP +    K + + +
Sbjct: 12  YGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSD 71

Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
           +       PLT N +N+L +  R+     ++  F  + +         V++   L+   L
Sbjct: 72  MTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTL 131

Query: 168 AQIAKQVQK-LTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
            ++   ++  L+  + ++++  IDPS++ G  +R    G K +DMS K ++++++  +
Sbjct: 132 TELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRI---GEKYVDMSAKTKIQKLSRAM 186

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B Length = 134

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 2/132 (1%)

Query: 48  ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDE 107
            TVA  YA A  D A  + ++E     +    ++   +Q+ E               +  
Sbjct: 4   ITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAV 63

Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
                 L     N + ++ +  R++ + D++++F  +      T    V S   L  + L
Sbjct: 64  C--GEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQL 121

Query: 168 AQIAKQVQKLTG 179
           A+I+  ++K   
Sbjct: 122 AKISAAMEKRLS 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	100.0
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	99.96
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.08
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.57
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	96.0
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	92.83

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=100.00  E-value=3.3e-42  Score=297.24  Aligned_cols=175  Identities=21%  Similarity=0.423  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID  127 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie  127 (261)
                      .++|++||+|||++|.+++.++.|.++|..+..++++|+|+.+|.||.++.++|.+++.++|++.++++.+.|||++|++
T Consensus        12 ~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~nfl~ll~~   91 (190)
T 2wss_S           12 YGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAE   91 (190)
T ss_dssp             CSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSSSTTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSSHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999899999999999999999999999999864589999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCC-ceeEEEEeECCCCceeEEEEEecCCC
Q 024892          128 AKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGA-KNVRIKTVIDPSLVAGFTIRYGKWGS  206 (261)
Q Consensus       128 n~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~-k~I~l~~~VDpsLIGG~iI~i~~~gd  206 (261)
                      |+|+.++++|+++|.+++++++|+..++|+||+|||++|+++|++.|++++|. +++.++++|||+||||++|++   ||
T Consensus        92 ~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~v---gd  168 (190)
T 2wss_S           92 NGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRI---GE  168 (190)
T ss_dssp             TTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC-------------------------
T ss_pred             CCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEEE---CC
Confidence            99999999999999999999999999999999999999999999999999973 689999999999999999999   79


Q ss_pred             EEEeccHHHHHHHHHHHhc
Q 024892          207 KLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       207 ~viD~Svk~~L~~Lk~~L~  225 (261)
                      ++||+|++++|++|++.|.
T Consensus       169 ~viD~Sv~~~L~~l~~~L~  187 (190)
T 2wss_S          169 KYVDMSAKTKIQKLSRAMR  187 (190)
T ss_dssp             CCTTTTTTTTTTTTCTTTT
T ss_pred             EEEehhHHHHHHHHHHHHh
Confidence            9999999999999998875

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B

Probab=99.96  E-value=2.9e-28  Score=197.93  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID  127 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie  127 (261)
                      .+||+|||+|||++|.+++.++.|.+.+..+..+.++|+|+.+|. |.++.++|.+++.++|++ ++++.+.|||++|++
T Consensus         4 ~~ia~rYA~AL~~~A~e~~~l~~~~e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll~~   81 (134)
T 1abv_A            4 ITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVMAE   81 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHH
Confidence            579999999999999999999999744444444545899999999 999999999999999986 799999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhC
Q 024892          128 AKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTG  179 (261)
Q Consensus       128 n~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g  179 (261)
                      |+|+.++++|++.|.+++++++|++.|+|+||.|||++|+++|.+.|++++|
T Consensus        82 ~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~g  133 (134)
T 1abv_A           82 NGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLS  133 (134)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred             CCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999988

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.08  E-value=0.0021  Score=53.55  Aligned_cols=85  Identities=20%  Similarity=0.272  Sum_probs=53.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHH---HHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892          130 RVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAK---QVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS  206 (261)
Q Consensus       130 Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~---~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd  206 (261)
                      ...++..++.+....+    +.-.++|+    ++++....+.+   .+.+.++  .+.++..-++...||++|..++ |+
T Consensus       102 y~~~l~~li~e~~~~~----~~~~v~i~----v~~~D~~~v~~~~~~~~~~~~--~~~l~i~~~~~~~GG~~i~~~~-G~  170 (198)
T 2dm9_A          102 YFESVKALLKEAIKEL----NEKKVRVM----SNEKTLGLIASRIEEIKSELG--DVSIELGETVDTMGGVIVETED-GR  170 (198)
T ss_dssp             HHHHHHHHHHHHHHHH----TCSEEEEE----CCHHHHHHHHHTHHHHHHHCT--TCEEEECCCCCCSSEEEEEETT-SS
T ss_pred             HHHHHHHHHHHHHHHc----CCCCEEEE----ECHhHHHHHHHHHHHHHHHhc--CceEEECCCCCccCceEEEeCC-CC
Confidence            3445555555444433    33345554    34444444444   4445553  2344432255788999999965 77


Q ss_pred             EEEeccHHHHHHHHHHHhc
Q 024892          207 KLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       207 ~viD~Svk~~L~~Lk~~L~  225 (261)
                      ..+|+|+.++|+.+...+.
T Consensus       171 i~id~tl~~rl~~~~~~l~  189 (198)
T 2dm9_A          171 IRIDNTFEARMERFEGEIR  189 (198)
T ss_dssp             CEEEEEHHHHHHHTHHHHH
T ss_pred             EEEECcHHHHHHHHHHHhH
Confidence            8999999999999999886

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.57  E-value=0.028  Score=47.13  Aligned_cols=53  Identities=19%  Similarity=0.310  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       166 q~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      ....+...+.. +|   +  ++..++++.|||+|...| |..++|+|+.++|+.+...+.
T Consensus       126 D~~~v~~~~~~-~~---~--~~~~~~~~~GGvil~~~d-G~I~vdnTle~rL~~~~~~~~  178 (187)
T 3v6i_A          126 DLPHLEALARE-RG---V--ELQAEPALRLGVRAVGAE-GKTQVENSLLARLDRAWDALS  178 (187)
T ss_dssp             THHHHHHHHHH-HT---C--EEEECTTCCSEEEEECTT-SSCEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cC---e--eeCCCCcccCceEEEeCC-CCEEEECCHHHHHHHHHHHhH
Confidence            34444444443 35   2  334688999999999864 778999999999999998876

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=96.00  E-value=0.08  Score=45.90  Aligned_cols=88  Identities=11%  Similarity=0.109  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHcCceeEEEEeecCCCHH----HHHHHHHHHHHHhCCceeEEEEeEC------CCCceeEEEEEecC
Q 024892          135 KDIVKEFEEVYNKMTNTEMAVVSSVVKLESE----HLAQIAKQVQKLTGAKNVRIKTVID------PSLVAGFTIRYGKW  204 (261)
Q Consensus       135 ~~I~~~f~~l~~~~~g~~~~~VtSA~~Lsee----q~~~L~~~L~k~~g~k~I~l~~~VD------psLIGG~iI~i~~~  204 (261)
                      ..++..+........+.-.+.|.+ .+=+.+    .+..+.+.+..+.+ +.......++      ++.+||++|..+| 
T Consensus       118 ~~lL~~Li~eal~~l~e~~v~V~~-~~~D~~lv~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~GGvil~s~d-  194 (233)
T 4efa_E          118 KPILQSLIVEALLKLLEPKAIVKA-LERDVDLIESMKDDIMREYGEKAQ-RAPLEEIVISNDYLNKDLVSGGVVVSNAS-  194 (233)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEE-CTTTHHHHTTSHHHHHHHHHHHTT-TSCCCEEEECSSCCCTTTCSSEEEEECTT-
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEe-cHhhHHHHHHHHHHHHHHHHHHhC-CCCccccccccccCCcccccCceEEEECC-
Confidence            344444333333333444555554 333333    33455555666666 4444444443      3478999999875 


Q ss_pred             CCEEEeccHHHHHHHHHHHhc
Q 024892          205 GSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       205 gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      |..++|.|+-++|+.+...+.
T Consensus       195 GkI~vdNTle~RL~~~~~~~l  215 (233)
T 4efa_E          195 DKIEINNTLEERLKLLSEEAL  215 (233)
T ss_dssp             SCCEEEEEHHHHHHHHHHHHH
T ss_pred             CCEEEECCHHHHHHHHHHHHH
Confidence            779999999999999988775

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=92.83  E-value=0.013  Score=45.39  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892          167 LAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD  225 (261)
Q Consensus       167 ~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~  225 (261)
                      +..+.+.++++.| +++.++..-..+.+||+++...| |...+|.|+.++|+.++.++.
T Consensus        42 l~~~~~e~~~~~g-~~~~v~~~~~~~~~GGvil~s~d-g~I~vdNTle~rL~~l~~~~~   98 (106)
T 3lg8_A           42 LWNLEKEVENATK-KVTVLKKGEPVDIAGGCIIETAD-GLKSLDNSLEAIFNRNLNVIR   98 (106)
T ss_dssp             CTTTTTTHHHHSS-SCCCCCCCCCCSSSCBCBCSSCS-CBCCCCSHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CeEEEEeCCCccccccEEEEeCC-CCEEEECCHHHHHHHHHHHHH
Confidence            3444555677788 56655442235789999999875 888899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1abva_	105	a.70.1.1 (A:) N-terminal domain of the delta subun	9e-16

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

 Score = 68.9 bits (168), Expect = 9e-16
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 48  ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDE 107
            TVA  YA A  D A  + ++E     +    ++   +Q+ E               +  
Sbjct: 4   ITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFI-- 61

Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNT 151
                 L     N + ++ +  R++ + D++++F  +      T
Sbjct: 62  AVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEAT 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1abva_	105	N-terminal domain of the delta subunit of the F1F0	99.86
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	97.03

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.5e-21  Score=150.95  Aligned_cols=101  Identities=18%  Similarity=0.272  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892           48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID  127 (261)
Q Consensus        48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie  127 (261)
                      .|||+|||+|||++|.|.+.++.|.++|..+..+++|+++..++.+|.++.+ |...+..++.+ ++++.+.|||.+|++
T Consensus         4 ~TiArrYAkALf~lA~e~~~l~~~~~~l~~l~~l~~~~~~~~~l~~p~~~~~-kk~~l~~~~~~-~~~~~~~nfl~lL~~   81 (105)
T d1abva_           4 ITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPET-LAESFIAVCGE-QLDENGQNLIRVMAE   81 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHTCSSCHHH-HHHHHHHHHCS-CCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcCHHHHHHHhcccCcHH-HHHHHHHHHhc-ccCHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999998877655 55556666666 699999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHcC
Q 024892          128 AKRVDVVKDIVKEFEEVYNKMTN  150 (261)
Q Consensus       128 n~Rl~~L~~I~~~f~~l~~~~~g  150 (261)
                      |+|+.+|++|++.|.++++++.|
T Consensus        82 ~~Rl~~l~~I~~~f~~L~~~~e~  104 (105)
T d1abva_          82 NGRLNALPDVLEQFIHLRAVSEA  104 (105)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999998875

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.03  E-value=0.0022  Score=48.26  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHH
Q 024892          135 KDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVK  214 (261)
Q Consensus       135 ~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk  214 (261)
                      .+++..+........+.-.+.|..... |.+-.+.+...+.+.++  .+.+...-+++++|||+|...| |...+|+|+.
T Consensus        23 ~~~L~~Li~~a~~~l~~~ev~v~~~~~-D~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~GGvil~s~d-G~I~vdnTle   98 (118)
T d2dm9a1          23 FESVKALLKEAIKELNEKKVRVMSNEK-TLGLIASRIEEIKSELG--DVSIELGETVDTMGGVIVETED-GRIRIDNTFE   98 (118)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEECCHH-HHHHHHHTHHHHHHHCT--TCEEEECCCCCCSSEEEEEETT-SSCEEEEEHH
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEchh-hHHHHHHHHHHHHHHcC--CceeEeCCCCccCCCEEEEecC-CCEEEECcHH
Confidence            344443333333333444566654322 33344444444444444  4556666788999999999865 7889999999


Q ss_pred             HHHHHHHHHhc
Q 024892          215 KQLEEIAAQLD  225 (261)
Q Consensus       215 ~~L~~Lk~~L~  225 (261)
                      ++|+.....+.
T Consensus        99 ~rl~~~~e~~~  109 (118)
T d2dm9a1          99 ARMERFEGEIR  109 (118)
T ss_dssp             HHHHHTHHHHH
T ss_pred             HHHHHHHHHhH
Confidence            99999988875