Citrus Sinensis ID: 024926

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIGNTSS
ccccccccHHHHHHHHHccHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEccccccccccccccccEEEEEEcccccccccEEEEEEEEcccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEcccccEEHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHHccccc
ccHHHHHHHHHHHHHHHcHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccEEHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHcEEEEEEcccccccccccccccEEEEEEEEccccccccEEEccEEEccEEcccccccccEEEEccccEEEEcccccccccccccccHHEEEEEEEHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHccccc
MHAPSVLVPAFVKAVRDNTEASFRSimaepipgiytfemLQPRFCEMLLSEVENFERWVHDtrfrimrpntmnkfgavlddFGLETMLDKLMNDFirpiskvffpevggstldshhGFVVEygmdrdvelgfhvddseVTLNVClgrefsggelffrgvrcdkhvntetqseeildyshvpgyavlhrgrhrhgarattsgsRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIGNTSS
MHAPSVLVPAFVKAVRDNTEASFrsimaepipgIYTFEMLQPRFCEMLLSEVENFERWVHDTrfrimrpntmnKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTEtqseeildyshVPGYAVLHRGRHRHgarattsgsrvnlLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQellkrigntss
MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLhrgrhrhgaraTTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIGNTSS
*****VLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAA**************
**APSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHD****I**PNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCA******************************
MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR************GSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIGNTSS
MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRI*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRExxxxxxxxxxxxxxxxxxxxxRQCISIAATKQELLKRIGNTSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q3ED68397 Uncharacterized PKHD-type no no 0.980 0.642 0.635 1e-101
Q6N063350 2-oxoglutarate and iron-d no no 0.707 0.525 0.408 3e-36
Q28C22349 2-oxoglutarate and iron-d yes no 0.757 0.564 0.381 6e-36
A3KGZ2345 2-oxoglutarate and iron-d yes no 0.769 0.579 0.361 1e-34
Q9CQ04349 2-oxoglutarate and iron-d yes no 0.669 0.498 0.396 3e-34
Q20679730 Procollagen-lysine,2-oxog yes no 0.630 0.224 0.283 8e-11
Q9R0E1741 Procollagen-lysine,2-oxog no no 0.630 0.221 0.276 5e-09
Q5U367741 Procollagen-lysine,2-oxog no no 0.626 0.219 0.283 8e-09
P24802730 Procollagen-lysine,2-oxog no no 0.676 0.241 0.258 9e-09
Q5R6K5738 Procollagen-lysine,2-oxog no no 0.630 0.222 0.276 1e-08
>sp|Q3ED68|Y1295_ARATH Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2 Back     alignment and function desciption
 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 162/255 (63%), Positives = 208/255 (81%)

Query: 5   SVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRF 64
           S   P+F+ A    +E +FRS M E  PGI+TFEM +P+FCEMLL+EVE+ E+WV+D+R 
Sbjct: 132 SFFAPSFLGAFSRKSEPNFRSSMVESYPGIFTFEMFKPQFCEMLLAEVEHMEKWVYDSRS 191

Query: 65  RIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGM 124
            IMRPNTMN FG VLDDFG ++ML KL++DFI PI++V FPEV G++LDSHHG++VEYG 
Sbjct: 192 TIMRPNTMNNFGVVLDDFGFDSMLQKLVDDFISPIAQVLFPEVCGTSLDSHHGYIVEYGK 251

Query: 125 DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYA 184
           DRDV+LGFHVDDSEV+LNVCLG++FSGGEL+FRGVRCDKHVN+++  +E+ DYSHVPG+A
Sbjct: 252 DRDVDLGFHVDDSEVSLNVCLGKQFSGGELYFRGVRCDKHVNSDSTEKEVYDYSHVPGHA 311

Query: 185 VLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISI 244
           +LHRGRHRHGARATTSG R NL++WCRSS FRE+K YQ++ S WC  C+ +K+ RQ  SI
Sbjct: 312 ILHRGRHRHGARATTSGHRANLILWCRSSTFREMKNYQRDFSGWCGGCKLDKQRRQRDSI 371

Query: 245 AATKQELLKRIGNTS 259
            ATK+ L ++    +
Sbjct: 372 NATKEILARKAAEKT 386

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6N063|OGFD2_HUMAN 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2 Back     alignment and function description
>sp|Q28C22|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Xenopus tropicalis GN=ogfod2 PE=2 SV=1 Back     alignment and function description
>sp|A3KGZ2|OGFD2_DANRE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Danio rerio GN=ogfod2 PE=2 SV=1 Back     alignment and function description
>sp|Q9CQ04|OGFD2_MOUSE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Mus musculus GN=Ogfod2 PE=2 SV=1 Back     alignment and function description
>sp|Q20679|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-dioxygenase OS=Caenorhabditis elegans GN=let-268 PE=1 SV=1 Back     alignment and function description
>sp|Q9R0E1|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Mus musculus GN=Plod3 PE=1 SV=1 Back     alignment and function description
>sp|Q5U367|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus norvegicus GN=Plod3 PE=2 SV=1 Back     alignment and function description
>sp|P24802|PLOD1_CHICK Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Gallus gallus GN=PLOD1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6K5|PLOD3_PONAB Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Pongo abelii GN=PLOD3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
449458771 384 PREDICTED: uncharacterized PKHD-type hyd 0.976 0.661 0.838 1e-129
255567788 411 oxidoreductase, putative [Ricinus commun 1.0 0.632 0.792 1e-125
359490986 395 PREDICTED: uncharacterized PKHD-type hyd 1.0 0.658 0.792 1e-123
297734260312 unnamed protein product [Vitis vinifera] 1.0 0.833 0.792 1e-123
255570701 379 oxidoreductase, putative [Ricinus commun 0.976 0.670 0.795 1e-122
217075767 395 unknown [Medicago truncatula] 0.976 0.643 0.775 1e-121
388494122 395 unknown [Medicago truncatula] 0.976 0.643 0.775 1e-121
225424112 379 PREDICTED: uncharacterized PKHD-type hyd 0.996 0.683 0.768 1e-120
224135445 391 predicted protein [Populus trichocarpa] 0.969 0.644 0.785 1e-118
224101785 372 predicted protein [Populus trichocarpa] 1.0 0.698 0.746 1e-117
>gi|449458771|ref|XP_004147120.1| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus] gi|449503401|ref|XP_004161984.1| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 213/254 (83%), Positives = 238/254 (93%)

Query: 1   MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVH 60
           MHA +  VP+F+KA+ +N+E SFR IM+EP PGIY FEMLQP+FCE LLSEVE+FERWVH
Sbjct: 125 MHAANFFVPSFLKAINENSEESFRRIMSEPSPGIYKFEMLQPQFCEKLLSEVESFERWVH 184

Query: 61  DTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVV 120
           +T+FRIMRPNTMNK+GAVLDDFGLETMLDKLM+DFIRPIS+VFFPEVGG+TLDSHHGFVV
Sbjct: 185 ETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMDDFIRPISRVFFPEVGGATLDSHHGFVV 244

Query: 121 EYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHV 180
           EYG+DRDVELGFHVDDSEVTLNVCLG++FSGGELFFRG+RCDKHVNTETQSEEI DY HV
Sbjct: 245 EYGIDRDVELGFHVDDSEVTLNVCLGKQFSGGELFFRGIRCDKHVNTETQSEEIFDYLHV 304

Query: 181 PGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQ 240
           PG+AVLHRGRHRHGARATTSG RVNLL+WCRSSVFRELKKYQK+ SSWC ECQREK+ERQ
Sbjct: 305 PGHAVLHRGRHRHGARATTSGRRVNLLLWCRSSVFRELKKYQKDFSSWCGECQREKRERQ 364

Query: 241 CISIAATKQELLKR 254
            +SI ATKQELL+R
Sbjct: 365 LLSIDATKQELLRR 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567788|ref|XP_002524872.1| oxidoreductase, putative [Ricinus communis] gi|223535835|gb|EEF37496.1| oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359490986|ref|XP_002277437.2| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734260|emb|CBI15507.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255570701|ref|XP_002526305.1| oxidoreductase, putative [Ricinus communis] gi|223534386|gb|EEF36094.1| oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|217075767|gb|ACJ86243.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494122|gb|AFK35127.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225424112|ref|XP_002283582.1| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Vitis vinifera] gi|297737750|emb|CBI26951.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135445|ref|XP_002322075.1| predicted protein [Populus trichocarpa] gi|222869071|gb|EEF06202.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101785|ref|XP_002312420.1| predicted protein [Populus trichocarpa] gi|222852240|gb|EEE89787.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2092727394 AT3G18210 [Arabidopsis thalian 0.961 0.634 0.673 1e-93
TAIR|locus:2017774397 AT1G22950 [Arabidopsis thalian 0.957 0.627 0.612 4.9e-85
TAIR|locus:2008189291 AT1G48700 [Arabidopsis thalian 0.95 0.848 0.497 3.7e-71
TAIR|locus:2158327410 AT5G43660 [Arabidopsis thalian 0.957 0.607 0.501 2.1e-68
DICTYBASE|DDB_G0270778417 DDB_G0270778 "putative prolyl 0.657 0.410 0.4 2.4e-35
RGD|1310594349 Ogfod2 "2-oxoglutarate and iro 0.669 0.498 0.375 4.4e-29
UNIPROTKB|Q6N063350 OGFOD2 "2-oxoglutarate and iro 0.669 0.497 0.385 1.2e-28
ZFIN|ZDB-GENE-061215-54345 zgc:158437 "zgc:158437" [Danio 0.815 0.614 0.337 2.4e-28
UNIPROTKB|F1NPS1350 F1NPS1 "Uncharacterized protei 0.780 0.58 0.333 3.1e-28
MGI|MGI:1913877349 Ogfod2 "2-oxoglutarate and iro 0.669 0.498 0.358 1e-27
TAIR|locus:2092727 AT3G18210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 169/251 (67%), Positives = 206/251 (82%)

Query:     4 PSV-LVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDT 62
             P+V  VPAF+KA+ +NTE SFR+I++EP PG++ F+MLQP FCEM+L+E++NFERWV +T
Sbjct:   138 PTVCFVPAFLKAINENTEESFRNIISEPSPGVFVFDMLQPSFCEMMLAEIDNFERWVGET 197

Query:    63 RFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEY 122
             +FRIMRPNTMNK+GAVLDDFGL+TMLDKLM  FIRPISKVFF +VGG+TLDSHHGFVVEY
Sbjct:   198 KFRIMRPNTMNKYGAVLDDFGLDTMLDKLMEGFIRPISKVFFSDVGGATLDSHHGFVVEY 257

Query:   123 GMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG 182
             G DRDV+LGFHVDDSEVTLNVCLG +F GGELFFRG RC+KHVNT T+++E  DY H+PG
Sbjct:   258 GKDRDVDLGFHVDDSEVTLNVCLGNQFVGGELFFRGTRCEKHVNTATKADETYDYCHIPG 317

Query:   183 YAVLXXXXXXXXXXXTTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCI 242
              AVL           TT G RVN+L+WCRSSVFRELK + K+ SSWC EC  EK++ +  
Sbjct:   318 QAVLHRGRHRHGARATTCGHRVNMLLWCRSSVFRELKTHHKDFSSWCGECFCEKRDEKVR 377

Query:   243 SIAATKQELLK 253
             SI A +++L K
Sbjct:   378 SIDALRKKLFK 388
GO:0005506 "iron ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2017774 AT1G22950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008189 AT1G48700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158327 AT5G43660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270778 DDB_G0270778 "putative prolyl 4-hydroxylase alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1310594 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6N063 OGFOD2 "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061215-54 zgc:158437 "zgc:158437" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPS1 F1NPS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1913877 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.847.1
hypothetical protein (342 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 1e-27
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-06
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information 
 Score =  103 bits (259), Expect = 1e-27
 Identities = 46/181 (25%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 41  QPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDK--LMNDFIRP 98
            P  C+ LL E E    W  +    I  PN  ++        G    L +  L+ + IR 
Sbjct: 1   SPAECQKLLEEAEPLG-WRGEVTRGIGNPNETSQ---YRQSNGTWLELLERDLVIERIRQ 56

Query: 99  ISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVD-----DSEVTLNVCLGREFSGGE 153
               F   + G  L +    V  YG       G HVD     D   T  + L     GGE
Sbjct: 57  RLADFLGLLAGLPLSAEDAQVARYG--PGGHYGPHVDNFLYGDRIATFILYLNDVEEGGE 114

Query: 154 LFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLH---RGRHRHGARATTSGSRVNLLVWC 210
           L F G+R       + +           G  +      GR  HG    T GSR  +  W 
Sbjct: 115 LVFPGLRLMVVATVKPK----------KGDLLFFPSGHGRSLHGVCPVTRGSRWAITGWI 164

Query: 211 R 211
           R
Sbjct: 165 R 165

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
KOG1971415 consensus Lysyl hydroxylase [Posttranslational mod 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.9
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.85
PLN00052310 prolyl 4-hydroxylase; Provisional 99.65
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.48
PHA02813 354 hypothetical protein; Provisional 99.4
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.24
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.01
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 98.75
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.59
KOG1971415 consensus Lysyl hydroxylase [Posttranslational mod 97.9
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.82
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 97.78
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.63
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.52
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.5
TIGR02466201 conserved hypothetical protein. This family consis 97.14
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 97.1
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 96.99
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.95
COG3826236 Uncharacterized protein conserved in bacteria [Fun 96.49
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 95.19
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 94.7
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 94.33
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 94.11
PLN02276361 gibberellin 20-oxidase 94.05
PLN02365300 2-oxoglutarate-dependent dioxygenase 93.93
PLN02904357 oxidoreductase 93.68
PLN02947374 oxidoreductase 93.5
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 93.21
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 93.2
PLN02216357 protein SRG1 92.77
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 92.65
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 92.62
PLN02156335 gibberellin 2-beta-dioxygenase 92.4
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 92.26
PLN02704335 flavonol synthase 91.88
PTZ00273320 oxidase reductase; Provisional 91.82
PLN02485329 oxidoreductase 91.77
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 91.44
PF10014195 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018 91.4
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 91.26
PLN02254358 gibberellin 3-beta-dioxygenase 91.21
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 91.13
PLN02403303 aminocyclopropanecarboxylate oxidase 90.67
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.51
PLN02997325 flavonol synthase 90.26
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.15
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 89.26
PLN02393362 leucoanthocyanidin dioxygenase like protein 89.14
KOG3200224 consensus Uncharacterized conserved protein [Funct 87.44
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 87.32
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 86.76
PF05118163 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl 84.44
COG5285299 Protein involved in biosynthesis of mitomycin anti 82.62
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4e-47  Score=358.90  Aligned_cols=255  Identities=38%  Similarity=0.605  Sum_probs=246.3

Q ss_pred             CCCCCCCChhHHHHcccccHHHHHhhhcccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccccccCCCCccceeec
Q 024926            1 MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLD   80 (260)
Q Consensus         1 ~~~~~~~~p~f~~~i~~~~~~~~~~~~~e~~p~Vy~fpvft~~fC~~LI~e~e~f~~w~~~s~~~~~rpn~mn~ygvvld   80 (260)
                      +||+.+|.|+|..+...++++.|++++.|+.|++|++|+|++.||++++.++|+++.|+.+++++++|||+|++|+++++
T Consensus       122 ~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~~P~~~~~li~~~k  201 (415)
T KOG1971|consen  122 LDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVITRPNTLRNLIVLNK  201 (415)
T ss_pred             CCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceeccCChhHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc--chhHHHHHHHHHhhhhhhh---------------------hhCCCcCCCCCCccceeEEEEcCC-CCCCccccccC
Q 024926           81 DF--GLETMLDKLMNDFIRPISK---------------------VFFPEVGGSTLDSHHGFVVEYGMD-RDVELGFHVDD  136 (260)
Q Consensus        81 d~--gl~~~~~~l~~~~l~Pl~~---------------------~lfp~~~~~~Lds~~~FvvrY~~~-~d~~l~~H~D~  136 (260)
                      ++  ++..+..+|.++|+.||++                     .++|++.+..||+|++|++.|..+ .|.++++|+|+
T Consensus       202 ~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~~~~Dpdm~~~~~~  281 (415)
T KOG1971|consen  202 EFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSEDNRDPDMGFCVDA  281 (415)
T ss_pred             hccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccCcCCCCccccccch
Confidence            99  9999999999999999999                     999999999999999999999665 99999999999


Q ss_pred             CeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCCCcCccccCccc-eeEEEeeccchhh
Q 024926          137 SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGS-RVNLLVWCRSSVF  215 (260)
Q Consensus       137 S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~pVTsG~-Ry~Lv~w~rss~~  215 (260)
                      +++|+|+||++.|+||+|+|.+..|+.|.+. .++.++|+++|.+|+|+||+|.|+|++.+.++|+ |-+++.|+.++.+
T Consensus       282 ~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~~~~nv~~~~~~~~c  360 (415)
T KOG1971|consen  282 REVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQPCPNVYWFPISSLC  360 (415)
T ss_pred             hhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCCCCCceeeehhHHHH
Confidence            9999999999999999999999999999876 6788999999999999999999999999999999 9999999999999


Q ss_pred             hhhHhhhhhcccccchhhhhhhHHHHHHHHHHHHHHHhhhc
Q 024926          216 RELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIG  256 (260)
Q Consensus       216 R~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~  256 (260)
                      |+|.+|+.+|+.||+.|...+++++..+..+||...++..+
T Consensus       361 ~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~  401 (415)
T KOG1971|consen  361 DELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVG  401 (415)
T ss_pred             HHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhh
Confidence            99999999999999999999999999999999999888654

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1 Back     alignment and domain information
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 37/208 (17%), Positives = 64/208 (30%), Gaps = 66/208 (31%)

Query: 5   SVLVPAFV-----KAVRDNTEASFRS-----IMAEP--IPGIYTFEMLQPRFCEMLLSEV 52
           SV   AFV     K V+D  ++         I+     + G         R    LLS+ 
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-------RLFWTLLSKQ 75

Query: 53  EN-FERWVHDTRFRIMRPN---TMNKFGAVLDDFGLETML-----DKLMNDFIRPISKVF 103
           E   +++V +    ++R N    M+          + T +     D+L ND  +  +K  
Sbjct: 76  EEMVQKFVEE----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYN 130

Query: 104 FP---EVGGSTL------DSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGEL 154
                      L            V+  G+     LG     + V L+VC    +     
Sbjct: 131 VSRLQPY--LKLRQALLELRPAKNVLIDGV-----LGS--GKTWVALDVC--LSYKVQCK 179

Query: 155 FFRGV------RCDKHVNTETQSEEILD 176
               +       C+         E +L+
Sbjct: 180 MDFKIFWLNLKNCNSP-------ETVLE 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.82
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 99.79
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 99.79
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.48
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 98.45
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.16
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.92
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.76
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.69
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.67
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.52
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.5
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 96.93
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.55
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 96.53
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 95.83
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 92.63
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 92.42
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 92.39
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 91.95
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 90.91
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 89.71
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 89.61
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 89.3
3rcq_A197 Aspartyl/asparaginyl beta-hydroxylase; structural 86.24
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
Probab=99.82  E-value=1.1e-19  Score=162.92  Aligned_cols=163  Identities=17%  Similarity=0.306  Sum_probs=110.4

Q ss_pred             CeEEEec-CCCHHHHHHHHHHHHhcccccccCCc-cccccCCCCccceeecccchh-HHHHHHHHHhhhhhhhhhCCCcC
Q 024926           32 PGIYTFE-MLQPRFCEMLLSEVENFERWVHDTRF-RIMRPNTMNKFGAVLDDFGLE-TMLDKLMNDFIRPISKVFFPEVG  108 (260)
Q Consensus        32 p~Vy~fp-vft~~fC~~LI~e~e~f~~w~~~s~~-~~~rpn~mn~ygvvldd~gl~-~~~~~l~~~~l~Pl~~~lfp~~~  108 (260)
                      +.++.+| +||+++|++||+.++.- .|..+... ........||..+..++. +. .+++. +...+.    .- |.+.
T Consensus        19 ~~i~~i~dvLs~~Ec~~li~~~e~~-~~~dg~~t~g~~~~~vr~n~~l~~d~~-~~~~l~~~-i~~~l~----~~-~~f~   90 (243)
T 3dkq_A           19 GMLIEIPNVFSKQEVSHLREQLDAR-RWIDGNQTSGAMATTRKRNQQLDKDDP-VAVALGQQ-IMDRLL----AH-PQFV   90 (243)
T ss_dssp             TTBEEECCSSCHHHHHHHHHHHHTS-CCEEECCCSSBSSCCCEEEEECCTTCH-HHHHHHHH-HHHHHH----TC-HHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHHHhhC-CCccCcccCCCccccceeeeEECCCCH-HHHHHHHH-HHHHHc----cC-cchh
Confidence            5677775 99999999999999863 34332211 111123455555553432 32 22222 222221    11 0011


Q ss_pred             CCCC--CccceeEEEEcCCCCCCccccccCC-----------eeeEEEeeCC--ceeccceEEecccccccccccccccc
Q 024926          109 GSTL--DSHHGFVVEYGMDRDVELGFHVDDS-----------EVTLNVCLGR--EFSGGELFFRGVRCDKHVNTETQSEE  173 (260)
Q Consensus       109 ~~~L--ds~~~FvvrY~~~~d~~l~~H~D~S-----------~~TlnV~L~~--dfeGG~l~F~~~~~~~~v~~~~~~~~  173 (260)
                      ..+|  ......+.+|.+|+  ++++|+|.+           .+|+.++||+  +|+||+|.|......           
T Consensus        91 ~~~L~~~~e~~~~~rY~~G~--~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~~-----------  157 (243)
T 3dkq_A           91 SAALPLQFYPPLFNRYQGGE--TFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYGQ-----------  157 (243)
T ss_dssp             HHHCEEEEEEEEEEEECTTC--EEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTEE-----------
T ss_pred             hcccccccccceEEEECCCC--eeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCCc-----------
Confidence            1112  12235689999986  899999963           5899999998  999999999964321           


Q ss_pred             cceecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhh
Q 024926          174 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRE  217 (260)
Q Consensus       174 ~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~  217 (260)
                       ..++|++|.+|+|++..+|+|.|||+|.||+++.|++|. +|+
T Consensus       158 -~~V~P~~G~~v~F~s~~lH~v~pV~~G~R~~~~~Wi~s~-vr~  199 (243)
T 3dkq_A          158 -QSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQSM-VRD  199 (243)
T ss_dssp             -EEECCCTTCEEEEETTSEEEECCEEEECEEEEEEEEEES-CCC
T ss_pred             -EEEecCCCEEEEECCCCeEcCccccccCEEEEEEehhhc-cCC
Confidence             246899999999999999999999999999999999987 565
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.91
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.68
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 97.46
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.87
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 92.91
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 92.79
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 90.19
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 89.58
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=7.2e-05  Score=63.59  Aligned_cols=178  Identities=15%  Similarity=0.126  Sum_probs=88.8

Q ss_pred             CeEEEec-CCCHHHHHHHHHHHHhcccc-cccCCcccccc------CCCCcccee--ecccchh-HHHHHHHHHhhhhhh
Q 024926           32 PGIYTFE-MLQPRFCEMLLSEVENFERW-VHDTRFRIMRP------NTMNKFGAV--LDDFGLE-TMLDKLMNDFIRPIS  100 (260)
Q Consensus        32 p~Vy~fp-vft~~fC~~LI~e~e~f~~w-~~~s~~~~~rp------n~mn~ygvv--ldd~gl~-~~~~~l~~~~l~Pl~  100 (260)
                      .|...++ +|++++|++|.++++..-+. .........+.      ...+....+  +.++... .++.-+...-+..++
T Consensus        22 ~Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  101 (296)
T d2a1xa1          22 NGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYV  101 (296)
T ss_dssp             HSEEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCTTSHHHHHHHHCHHHHHHH
T ss_pred             CCEEEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhhhchhHHhhcccHHHHHHH
Confidence            3666665 99999999999998865431 11011110000      000111111  2233323 233323233333444


Q ss_pred             hhhC-CCcCCCCCCccceeEEEEcC-C-CCCCccccccCC---------eeeEEEeeCC-ceeccceEEeccccc----c
Q 024926          101 KVFF-PEVGGSTLDSHHGFVVEYGM-D-RDVELGFHVDDS---------EVTLNVCLGR-EFSGGELFFRGVRCD----K  163 (260)
Q Consensus       101 ~~lf-p~~~~~~Lds~~~FvvrY~~-~-~d~~l~~H~D~S---------~~TlnV~L~~-dfeGG~l~F~~~~~~----~  163 (260)
                      +.++ +++.   + .+..++++... + ......||.|.+         .+|+-|+|.+ +=+.|.|.+....-.    .
T Consensus       102 ~~llg~~~~---~-~~~~~~~k~p~~~~~~~~~~wHqD~~~~~~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~  177 (296)
T d2a1xa1         102 ECFTGPNIM---A-MHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKP  177 (296)
T ss_dssp             HHHHCSSEE---E-EEEEEEEECCC--------CCBCGGGGCCEECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCC
T ss_pred             HHhhccccc---e-ecccccccccccccccccCCcccCccccccCCccccceeeEeeeeccccccccceecccccccccc
Confidence            4444 2221   1 12223343321 1 223467999954         3688889964 345677777532100    0


Q ss_pred             cc---------------cccccccccceecCCCceEEEecCCCCcCccc-cCccceeEEEeeccch
Q 024926          164 HV---------------NTETQSEEILDYSHVPGYAVLHRGRHRHGARA-TTSGSRVNLLVWCRSS  213 (260)
Q Consensus       164 ~v---------------~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~p-VTsG~Ry~Lv~w~rss  213 (260)
                      |.               .........+....++|++|+|.+..+|++.| .+...|+++++-..++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~~~l~Hgs~~N~S~~~R~~l~~~y~~~  243 (296)
T d2a1xa1         178 HDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASA  243 (296)
T ss_dssp             CCC-----------CCCCC-CCCSCCEEECBCTTCEEEECTTCCEEECCBCSSSCEEEEEEEEEET
T ss_pred             cccccccCCcccccccccchhhccceEEeeecCCcEEEECCCeeecCCCCCCcCceEEEEEEEECC
Confidence            00               00000112234456899999999999999998 5577899998876654
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure