Citrus Sinensis ID: 024953

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MAIAISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEccccHHHHHHHHHHHHHccccEEEEEccccccEEcccccEEEEEccccccccHHHHHHHHcccccEEccccccccccEEEEEcccccEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHccccEccHHHcccEEEEEEcccEEcccccEEccccccHHHHHHHHccEEEEEEEEEHHHEccccccccccccEEEccHHHHHHHHHHHHHHHHcccccEEEEcccccEEEccccEEEEEEcccccccHHHHHHHHHccccEEEccEEHccccEEEEEcccccEEEEc
Coil and Loop (DISEMBL)
maiaisaekpssvetglsplsspppviltQDELKKIAAYKAVEFVESGMvlglgtgstaKHAVDRIGELLRqgkltnivgiptskktHEQAVSlgiplsdldsypvvdlaidgadevdpfmnlvkgrggslLREKMVEGACKKFVVIVDesklvphlggsglampvevvPYCWKFTAKRLQDLFEDCGCvaklrttgeqpfvtdngNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASElgvtirnk
Flexible Loop (DISEMBL)
maiaisaekpssvetglsplsspppvILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNivgiptskkthEQAVSLgiplsdldsyPVVDLAIDgadevdpfMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKlrttgeqpfvtdnGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVaselgvtirnk
Low Complexity Region (SEG)
MAIAISAEKPSSVETGlsplsspppVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK
Disordered region (IsUnstruct)
**************************ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI***
Disordered Region (DISOPRED)
********************************LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV*****
Disordered Region (DISEMBL)
****************LSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK
Disordered Region (DISPRO)
**************************ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIAISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q9ZU38	265	Probable ribose-5-phospha	yes	no	0.919	0.901	0.773	1e-106
B8FL28	230	Ribose-5-phosphate isomer	yes	no	0.838	0.947	0.489	1e-46
Q8E4Y6	223	Ribose-5-phosphate isomer	N/A	no	0.853	0.995	0.469	5e-45
Q8DZC6	223	Ribose-5-phosphate isomer	N/A	no	0.853	0.995	0.469	7e-45
Q2JSC9	230	Ribose-5-phosphate isomer	yes	no	0.861	0.973	0.461	2e-44
Q8EN78	224	Ribose-5-phosphate isomer	yes	no	0.85	0.986	0.441	2e-44
Q5JH26	229	Ribose-5-phosphate isomer	yes	no	0.846	0.960	0.418	3e-44
B8G2V0	237	Ribose-5-phosphate isomer	yes	no	0.842	0.924	0.477	3e-44
A7HS32	231	Ribose-5-phosphate isomer	yes	no	0.865	0.974	0.424	3e-44
Q72J47	227	Ribose-5-phosphate isomer	yes	no	0.834	0.955	0.466	3e-44

>sp|Q9ZU38|RPIA_ARATH Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/243 (77%), Positives = 218/243 (89%), Gaps = 4/243 (1%)

Query: 21  SSPP-PVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIV 79
           SSPP P+ LTQDELK+IAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKL NIV
Sbjct: 23  SSPPQPMNLTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIV 82

Query: 80  GIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEG 139
           GIPTSKKT EQA+SLGIPLSDLD++PV+DL+IDGADEVDPF+NLVKGRGGSLLREKM+EG
Sbjct: 83  GIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEG 142

Query: 140 ACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE- 198
           A KKFVVIVD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR  GE 
Sbjct: 143 ASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLR-LGEK 201

Query: 199 -QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257
            + FVTDNGNY++D+++++D+GDL   SD ILRL GVVEHGMFLDMA+TVI+A ELGV I
Sbjct: 202 GKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKI 261

Query: 258 RNK 260
           +NK
Sbjct: 262 KNK 264

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 6

>sp|B8FL28|RPIA_DESAA Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 148/231 (64%), Gaps = 13/231 (5%)

Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
           +QD LKK AA KAVE++ESGMV+GLG+GSTA  A+  I  L+++GKL +IVGIP+S  T 
Sbjct: 3   SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTE 62

Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
           E A SLGIPL   + + V+D+ IDGADEVDP +NL+KG GG+LLREK+V  A KK ++IV
Sbjct: 63  EVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIV 122

Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG-EQPFVTDNGN 207
           DESK+   L G+  A+PVEVVP+      + L+ L    G    +R     + F TDN N
Sbjct: 123 DESKISDKL-GTIFALPVEVVPFATASETRFLESL----GAKVTVRENQLGKAFKTDNHN 177

Query: 208 YVIDLYLKKDIGDLKVASDNILRL---AGVVEHGMFLDMATTVIVASELGV 255
            ++D     D G +  A    + L   AGVVEHG+FL     VIVA   G+
Sbjct: 178 RILD----ADFGPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224

Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q8E4Y6|RPIA_STRA3 Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype III (strain NEM316) GN=rpiA PE=3 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/230 (46%), Positives = 145/230 (63%), Gaps = 8/230 (3%)

Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           DELKK+A   A ++V++GM++GLGTGSTA   V+ IG  +++  L  +VG+ TS +T EQ
Sbjct: 2   DELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGL-QVVGVTTSNRTTEQ 60

Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A  LGIPL   D   V+D+ +DGADEVDP  N +KG GG+LL EK+V    K+++ +VDE
Sbjct: 61  ARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDE 120

Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           SKLV  LG     +PVEVV Y     ++RL  +F+  G     R T    F+TD GNY+I
Sbjct: 121 SKLVETLG--AFKLPVEVVRYG----SERLFRVFKSKGYCPSFRETEGDRFITDMGNYII 174

Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           DL LKK I D K  ++ +    GVVEHG+F  M   VIVA + G+ I  K
Sbjct: 175 DLDLKK-IEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK 223

Streptococcus agalactiae serotype III (taxid: 216495)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q8DZC6|RPIA_STRA5 Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN=rpiA PE=3 SV=1

 Score =  180 bits (457), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/230 (46%), Positives = 145/230 (63%), Gaps = 8/230 (3%)

Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           DELKK+A   A ++V++GM++GLGTGSTA   V+ IG  +++  L  +VG+ TS +T EQ
Sbjct: 2   DELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGL-QVVGVTTSNRTTEQ 60

Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A  LGIPL   D   V+D+ +DGADEVDP  N +KG GG+LL EK+V    K+++ +VDE
Sbjct: 61  ARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDE 120

Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           SKLV  LG     +PVEVV Y     ++RL  +F+  G     R T    F+TD GNY+I
Sbjct: 121 SKLVETLG--AFKLPVEVVRYG----SERLFRVFKSKGYCPSFRETEGDRFITDMGNYII 174

Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           DL LKK I D K  ++ +    GVVEHG+F  M   VIVA + G+ I  K
Sbjct: 175 DLDLKK-IEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGLDILEK 223

Streptococcus agalactiae serotype V (taxid: 216466)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q2JSC9|RPIA_SYNJA Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 153/234 (65%), Gaps = 10/234 (4%)

Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
           + DELK+ AA  A + V+SGMV+GLGTGSTA  AV  + + +++  L   +G+PTS++T 
Sbjct: 3   SADELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGL-QFIGVPTSERTA 61

Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVEGACKKFVVI 147
           EQA SLGIPL+ L+  P +DLAIDGADE++   +NL+KG GG+LLREK+VE +  + ++I
Sbjct: 62  EQARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIII 121

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNG 206
            D SK V HL G+   +PVEVV + WK T  R++ L    GC A LR T E  P++TD  
Sbjct: 122 ADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQ 176

Query: 207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV-TIRN 259
           +Y++D          K+A + +    GVVEHG+F+ MAT  I+A   G+ T+R 
Sbjct: 177 HYILDCQFGPIANPAKLA-EQLKGTVGVVEHGLFIGMATEAIIAGPEGIETLRQ 229

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q8EN78|RPIA1_OCEIH Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpiA1 PE=3 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 142/229 (62%), Gaps = 8/229 (3%)

Query: 30  QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
           QD+LKK    KA   V+ GM +GLG+GST    +  +GE ++Q  L  I GIP+S +T  
Sbjct: 4   QDKLKKAVGEKAATMVKDGMKVGLGSGSTVYWMIRSLGERIQQDGL-KIEGIPSSNQTAT 62

Query: 90  QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
            A   GIPL+D  +   +D+ IDGADEVD   +L+KG G +L REK++  A K+FV+IVD
Sbjct: 63  WAEEAGIPLTDFSNVKELDITIDGADEVDANNHLIKGGGAALFREKIIAQAAKEFVIIVD 122

Query: 150 ESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYV 209
           +SK+V  LG    ++PVEV+P+ W+ TA  +  L    GCV  +R   E+P VTDNGNY+
Sbjct: 123 QSKVVETLG--EFSLPVEVLPFSWQRTANEISKL----GCVPTVRVHEEEPLVTDNGNYI 176

Query: 210 IDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIR 258
           +D   K  I      +  I  + GV+E G+F+DMATTVIV  +  + I+
Sbjct: 177 LDCPFKV-IPHPDKLNKEIKSIVGVIETGLFIDMATTVIVGEKDNIYIK 224

Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q5JH26|RPIA_PYRKO Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpiA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/232 (41%), Positives = 150/232 (64%), Gaps = 12/232 (5%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +  +E+KK  A +A++F+E  MV+GLGTGST  + ++ +G+LL +G+L ++ G+PTS + 
Sbjct: 1   MNVEEMKKAVAKEALKFIEDEMVVGLGTGSTTAYFINYLGKLLMEGELEDVYGVPTSHQA 60

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              A+  GIP+  LD    +D+A+DGADEVDP MNL+KGRG +L  EK++E     F+V+
Sbjct: 61  RLLALEAGIPVVSLDEVDAIDIAVDGADEVDPHMNLIKGRGAALTMEKIIEYRAGMFIVL 120

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDN 205
           VDESKLV +L G  + +P+EV+P  W+  A+ L    E     A+LR   ++  P VTDN
Sbjct: 121 VDESKLVEYL-GQKMPVPIEVIPAAWRAIAEEL----EVFNATAELRMAVKKDGPVVTDN 175

Query: 206 GNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           GN+++D    +  D  DL++  + I    GVVE+G+F D+A  ++V +  GV
Sbjct: 176 GNFILDAKFARIEDPLDLEIELNTI---PGVVENGIFADIADIILVGTPEGV 224

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|B8G2V0|RPIA_CHLAD Ribose-5-phosphate isomerase A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpiA PE=3 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 146/226 (64%), Gaps = 7/226 (3%)

Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           + LK +AA  AV  ++ GMV+GLG GSTA +A   IGE L  G+L  IVG+P ++ T   
Sbjct: 5   ETLKAMAAAAAVALIQPGMVIGLGFGSTAAYATRMIGERLANGELREIVGVPCAEGTAAL 64

Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A  LGIPL+ LD    VD+ IDGADEVDP+M L+KG GG+LLREKMV  A ++  +IVDE
Sbjct: 65  ARELGIPLTTLDDVERVDITIDGADEVDPYMALIKGGGGALLREKMVAQASRRVAIIVDE 124

Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVA-KLRTTGEQPFVTDNGNYV 209
           SKL P L G+  A+P+EVV + ++ TA+ L       G V  +LR+ G QPF TD G+ +
Sbjct: 125 SKLSPAL-GTRFALPIEVVDFGYRATARWLA---AQGGSVRLRLRSDG-QPFRTDQGHLI 179

Query: 210 IDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           +D +    I D  V +D +   AG+VEHG+F+ +AT + VA   GV
Sbjct: 180 LD-WACGPIADPTVLADRLAARAGIVEHGLFIGLATDLFVAGATGV 224

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|A7HS32|RPIA_PARL1 Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 149/233 (63%), Gaps = 8/233 (3%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +  D+ KK AA +A+EFV+ GM LG+GTGSTA+H V  +GE ++ G   +IVG+PTS++T
Sbjct: 1   MNADDQKKAAAVRALEFVKPGMKLGMGTGSTAEHFVRALGEKVKAG--LDIVGVPTSERT 58

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            + A SLGIPL++LD  P +D+ +DGADE+D  + L+KG GG+LLREK+V  A  + +VI
Sbjct: 59  AKLAASLGIPLTNLDDTPHLDITVDGADELDGKLRLIKGGGGALLREKIVATASDRMIVI 118

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE---QPFVTD 204
            D SKLV  LG     +PVEV+P+    TA+++ ++    GC  K+    +   +PF TD
Sbjct: 119 ADASKLVKTLG--SFPLPVEVIPFGSAVTARKIAEVASAHGCTGKMSRRADEYGEPFFTD 176

Query: 205 NGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257
           + N++ D      I D    S  + R+ GVV++G+F+ +A   IV ++ G  I
Sbjct: 177 SENFIYDCAFGS-IPDPDGLSAALNRIPGVVDNGLFIGIAAMAIVGTDKGTDI 228

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q72J47|RPIA_THET2 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 144/225 (64%), Gaps = 8/225 (3%)

Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           +  KK AA+ A+ +V+ GMV+GLGTGSTA++AV  +   LR+G+L  +VG+PTS+ T E 
Sbjct: 6   ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65

Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A   GIPL DL     VDLAIDGADE+ P + L+KG GG+LLREK+VE A K+F+VI D 
Sbjct: 66  AKREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERAAKEFIVIADH 124

Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           +K VP LG     +PVE+VP+ ++ T K + DL    G   +LR  G++ + TD G+ + 
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIA 178

Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           D      IGD       +L + GVVE G+F+ MAT  +VA   GV
Sbjct: 179 DCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
449434554	275	PREDICTED: probable ribose-5-phosphate i	0.953	0.901	0.835	1e-116
297746207	322	unnamed protein product [Vitis vinifera]	0.996	0.804	0.796	1e-113
225424168	269	PREDICTED: probable ribose-5-phosphate i	0.996	0.962	0.8	1e-113
359478683	345	PREDICTED: probable ribose-5-phosphate i	0.996	0.750	0.796	1e-113
356575632	265	PREDICTED: probable ribose-5-phosphate i	0.980	0.962	0.786	1e-113
224058933	271	predicted protein [Populus trichocarpa]	0.961	0.922	0.776	1e-113
356536220	266	PREDICTED: probable ribose-5-phosphate i	0.976	0.954	0.780	1e-112
224101807	264	predicted protein [Populus trichocarpa]	0.953	0.939	0.800	1e-111
357444549	288	hypothetical protein MTR_1g108440 [Medic	0.888	0.802	0.824	1e-109
388491358	268	unknown [Medicago truncatula]	0.888	0.861	0.824	1e-109

>gi|449434554|ref|XP_004135061.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] gi|449493428|ref|XP_004159286.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/255 (83%), Positives = 231/255 (90%), Gaps = 7/255 (2%)

Query: 10  PSSVETGL--SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIG 67
           PSS  +GL   PLSS    ILTQDELKKIAAYKAVE+VESGMVLGLGTGSTAKHAVDRIG
Sbjct: 24  PSSTPSGLLAPPLSSG---ILTQDELKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIG 80

Query: 68  ELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGR 127
           ELLRQGKL NI+GIPTSKKTHEQAVSLGIPLSDLDS+PV+DLAIDGADEVDP +NLVKGR
Sbjct: 81  ELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVLDLAIDGADEVDPHLNLVKGR 140

Query: 128 GGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187
           GGSLLREKMVEGACKKFVVIVDESKLV ++GGSGLAMPVE+VP+CW FTA RLQ LFE  
Sbjct: 141 GGSLLREKMVEGACKKFVVIVDESKLVKYVGGSGLAMPVEIVPFCWNFTAARLQKLFEGS 200

Query: 188 GCVAKLRTTGE--QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMAT 245
           GCVAKLRT+GE  +PFVTDNGNY++DLY K+DIGDL VASD ILRLAGVVEHGMFL MAT
Sbjct: 201 GCVAKLRTSGESGEPFVTDNGNYIVDLYFKEDIGDLNVASDEILRLAGVVEHGMFLGMAT 260

Query: 246 TVIVASELGVTIRNK 260
           T+IVA ELG+TI+NK
Sbjct: 261 TLIVAGELGITIKNK 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746207|emb|CBI16263.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/270 (79%), Positives = 240/270 (88%), Gaps = 11/270 (4%)

Query: 1   MAIA----ISAEKPSSVETGL-----SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVL 51
           MAIA    I ++K S++ETG+     S   S PPVILTQDELKKIAAYKAVE+VESGMVL
Sbjct: 19  MAIAYPHFIGSQK-SAMETGMISSPSSSSPSRPPVILTQDELKKIAAYKAVEYVESGMVL 77

Query: 52  GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAI 111
           GLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSK THEQAVSLGIPLSDLDSYP++DLAI
Sbjct: 78  GLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKMTHEQAVSLGIPLSDLDSYPILDLAI 137

Query: 112 DGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPY 171
           DGADEVDP++NLVKGRGGSLLREKMVEGACKKFVVIVDESKLV +LGGSGLAMPVE+VP+
Sbjct: 138 DGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVNYLGGSGLAMPVEIVPF 197

Query: 172 CWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILR 230
           CWKFTA+RLQ LFE+ GCVAKLRT    +PFVTDN NY++DLY K++IGDLKVASD ILR
Sbjct: 198 CWKFTAQRLQMLFEESGCVAKLRTYQNGEPFVTDNMNYIVDLYFKREIGDLKVASDAILR 257

Query: 231 LAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           LAGVVEHGMF+DMATT+IVA E GV +++K
Sbjct: 258 LAGVVEHGMFIDMATTLIVAGECGVIVKDK 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424168|ref|XP_002284079.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/270 (80%), Positives = 239/270 (88%), Gaps = 11/270 (4%)

Query: 1   MAIA----ISAEKPSSVETGL-----SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVL 51
           MAIA    I +EK S++ETG+     SP  S P VILTQDELKKIAAYKAVE+VESGMVL
Sbjct: 1   MAIAYPHFIGSEK-SAMETGIILSPSSPSPSLPHVILTQDELKKIAAYKAVEYVESGMVL 59

Query: 52  GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAI 111
           GLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSKKTHEQAVSLGIPLSDLDS+P++DLAI
Sbjct: 60  GLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKKTHEQAVSLGIPLSDLDSHPILDLAI 119

Query: 112 DGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPY 171
           DGADEVDP++NLVKGRGGSLLREKMVEGACKKF+VIVDESKLV HLGGSGLAMPVE+VP+
Sbjct: 120 DGADEVDPYLNLVKGRGGSLLREKMVEGACKKFIVIVDESKLVNHLGGSGLAMPVEIVPF 179

Query: 172 CWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILR 230
           CWKFTA+RLQ  FE+ GCVAKLRT    +PFVTDN NYV+DLY K++IGDLKVASD ILR
Sbjct: 180 CWKFTAQRLQMFFEESGCVAKLRTYENGEPFVTDNRNYVVDLYFKREIGDLKVASDAILR 239

Query: 231 LAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           LAGVVEHGMFL MATT+IVA E GV +++K
Sbjct: 240 LAGVVEHGMFLGMATTLIVAGECGVVVKDK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478683|ref|XP_002282058.2| PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/270 (79%), Positives = 240/270 (88%), Gaps = 11/270 (4%)

Query: 1   MAIA----ISAEKPSSVETGL-----SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVL 51
           MAIA    I ++K S++ETG+     S   S PPVILTQDELKKIAAYKAVE+VESGMVL
Sbjct: 1   MAIAYPHFIGSQK-SAMETGMISSPSSSSPSRPPVILTQDELKKIAAYKAVEYVESGMVL 59

Query: 52  GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAI 111
           GLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSK THEQAVSLGIPLSDLDSYP++DLAI
Sbjct: 60  GLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKMTHEQAVSLGIPLSDLDSYPILDLAI 119

Query: 112 DGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPY 171
           DGADEVDP++NLVKGRGGSLLREKMVEGACKKFVVIVDESKLV +LGGSGLAMPVE+VP+
Sbjct: 120 DGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVNYLGGSGLAMPVEIVPF 179

Query: 172 CWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILR 230
           CWKFTA+RLQ LFE+ GCVAKLRT    +PFVTDN NY++DLY K++IGDLKVASD ILR
Sbjct: 180 CWKFTAQRLQMLFEESGCVAKLRTYQNGEPFVTDNMNYIVDLYFKREIGDLKVASDAILR 239

Query: 231 LAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           LAGVVEHGMF+DMATT+IVA E GV +++K
Sbjct: 240 LAGVVEHGMFIDMATTLIVAGECGVIVKDK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575632|ref|XP_003555942.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/258 (78%), Positives = 233/258 (90%), Gaps = 3/258 (1%)

Query: 5   ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVD 64
           I+ EK ++++ GL   SSP  VILTQD+LKKIAAYKAVE+VESGMVLGLGTGSTAKHAVD
Sbjct: 9   IATEK-AAMDAGLLHPSSPSSVILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVD 67

Query: 65  RIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLV 124
           RIGELLRQGKL +IVGIPTS KTH+QA+SLGIPLSDLDS+P VDLAIDGADEVDPF+NLV
Sbjct: 68  RIGELLRQGKLKDIVGIPTSTKTHDQALSLGIPLSDLDSHPTVDLAIDGADEVDPFLNLV 127

Query: 125 KGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLF 184
           KGRGGSLLREKMVEGACKKF+VIVDESKLV +LGGSGLAMPVEV+ +CW+FTA RLQ LF
Sbjct: 128 KGRGGSLLREKMVEGACKKFIVIVDESKLVNYLGGSGLAMPVEVIQFCWRFTAARLQKLF 187

Query: 185 EDCGCVAKLRTTGE--QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLD 242
           ++ GCVAKLRT  E  +P+VTDNGN+++DLY ++ IGDLK ASD IL+LAGVVEHGMFLD
Sbjct: 188 QEAGCVAKLRTFAEKDEPYVTDNGNFIVDLYFERSIGDLKAASDAILQLAGVVEHGMFLD 247

Query: 243 MATTVIVASELGVTIRNK 260
           MATTVIVA ELG+T++NK
Sbjct: 248 MATTVIVAGELGLTVKNK 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058933|ref|XP_002299653.1| predicted protein [Populus trichocarpa] gi|222846911|gb|EEE84458.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/264 (77%), Positives = 228/264 (86%), Gaps = 14/264 (5%)

Query: 5   ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVD 64
           +++EKP         +  P PV+LTQDELK+IAAYKAVE VESGMV+GLGTGSTAKHAVD
Sbjct: 11  VTSEKPDM------EMLFPSPVVLTQDELKRIAAYKAVEMVESGMVVGLGTGSTAKHAVD 64

Query: 65  RIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLV 124
           RIGELL QGKL NI+GIPTS KTHEQA+SLGIPLSDLDS+PV+D+AIDGADE+DP +NLV
Sbjct: 65  RIGELLHQGKLKNIIGIPTSTKTHEQALSLGIPLSDLDSHPVLDIAIDGADEIDPNLNLV 124

Query: 125 KGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLF 184
           KGRGGSLLREKMVEG CKKFVVIVDESKLV ++GGSGLAMPVE+VP+CWKFTAKRLQ+LF
Sbjct: 125 KGRGGSLLREKMVEGVCKKFVVIVDESKLVKYIGGSGLAMPVEIVPFCWKFTAKRLQELF 184

Query: 185 EDCGCVAKLRT--------TGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVE 236
           E  GCVAKLRT         G  PFVTDNGNYV+DLY K+DIGDLK ASD ILRLAGVVE
Sbjct: 185 EYAGCVAKLRTFASCNGMENGGLPFVTDNGNYVVDLYFKRDIGDLKAASDAILRLAGVVE 244

Query: 237 HGMFLDMATTVIVASELGVTIRNK 260
           HGMFLDMATTVIVA +LGVTI+NK
Sbjct: 245 HGMFLDMATTVIVAGDLGVTIKNK 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536220|ref|XP_003536637.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/260 (78%), Positives = 234/260 (90%), Gaps = 6/260 (2%)

Query: 5   ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVD 64
           I+ EK ++++ GL   SSP  VILTQD+LKKIAAYKAVE+VESGMVLGLGTGSTAKHAVD
Sbjct: 9   IATEK-AAMDAGLLHPSSPS-VILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVD 66

Query: 65  RIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLV 124
           RIGELLRQGKL +IVGIPTS KTHEQA+SLGIPLSDLD++P +DLAIDGADEVDPF+NLV
Sbjct: 67  RIGELLRQGKLKDIVGIPTSTKTHEQALSLGIPLSDLDAHPAIDLAIDGADEVDPFLNLV 126

Query: 125 KGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLF 184
           KGRGGSLLREKMVEGACKKF+VIVDESKLV +LGGSGLAMPVEV+ +CW+FTA RLQ LF
Sbjct: 127 KGRGGSLLREKMVEGACKKFIVIVDESKLVNYLGGSGLAMPVEVIKFCWRFTAARLQKLF 186

Query: 185 EDCGCVAKLRTTG----EQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF 240
           E+ GCVA+LRT G    E+P+VTDNGN+++DLY ++ IGDLK ASD IL+LAGVVEHGMF
Sbjct: 187 EEAGCVARLRTFGEKEKEEPYVTDNGNFIVDLYFERSIGDLKAASDAILQLAGVVEHGMF 246

Query: 241 LDMATTVIVASELGVTIRNK 260
           LDMATTVIVA ELG+T++NK
Sbjct: 247 LDMATTVIVAGELGLTVKNK 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101807|ref|XP_002312428.1| predicted protein [Populus trichocarpa] gi|118488529|gb|ABK96077.1| unknown [Populus trichocarpa] gi|222852248|gb|EEE89795.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/251 (80%), Positives = 225/251 (89%), Gaps = 3/251 (1%)

Query: 12  SVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLR 71
           S+E+G    SSP P+ILTQDELKKIAAYKAVEFV+SGMVLGLGTGSTAKHAVDRI +LL 
Sbjct: 15  SIESGAMSPSSPSPLILTQDELKKIAAYKAVEFVQSGMVLGLGTGSTAKHAVDRIADLLH 74

Query: 72  QGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSL 131
           QGKL NI+GIPTS KTH+QAVSLGIPLSDLDS+PVVDLAIDGADEVD  +NLVKGRGGSL
Sbjct: 75  QGKLKNIIGIPTSTKTHQQAVSLGIPLSDLDSHPVVDLAIDGADEVDSNLNLVKGRGGSL 134

Query: 132 LREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVA 191
           LREKM+E ACKKF+VIVD+SKLV H+G SG AMPVEVVP+CWKF+  RLQ+LF+  GCVA
Sbjct: 135 LREKMIESACKKFIVIVDQSKLVAHVGASG-AMPVEVVPFCWKFSQDRLQNLFDYAGCVA 193

Query: 192 KLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 249
           KLRT   GE+ FVTDNGNY++DL+ KKDIGDLKVASD ILRLAGVVEHGMFLDMATTVIV
Sbjct: 194 KLRTDNGGEKIFVTDNGNYIVDLFFKKDIGDLKVASDAILRLAGVVEHGMFLDMATTVIV 253

Query: 250 ASELGVTIRNK 260
           A ELG+TI++K
Sbjct: 254 AGELGITIKDK 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444549|ref|XP_003592552.1| hypothetical protein MTR_1g108440 [Medicago truncatula] gi|355481600|gb|AES62803.1| hypothetical protein MTR_1g108440 [Medicago truncatula]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 217/233 (93%), Gaps = 2/233 (0%)

Query: 30  QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
           QD+LKKIAAYKAVE+VESGMVLGLGTGSTAKHAV RIGEL+RQGKL NI+GIPTS  THE
Sbjct: 36  QDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVARIGELIRQGKLKNIIGIPTSTITHE 95

Query: 90  QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
           QAVSLGIPLSDLDS+PV+DLAIDGADEVDP++NLVKGRGGSLLREKMVEGACKKFV IVD
Sbjct: 96  QAVSLGIPLSDLDSHPVIDLAIDGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVCIVD 155

Query: 150 ESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE--QPFVTDNGN 207
           ESKLV +LGGSGLAMPVEV+ +CWKFTA RLQ+LFE+ GCVAKLRT+GE  +P+VTDNGN
Sbjct: 156 ESKLVNYLGGSGLAMPVEVIRFCWKFTAGRLQNLFEESGCVAKLRTSGEKGEPYVTDNGN 215

Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           Y++DLY KK IGDL+VASD IL +AGVVEHGMFLDMATTVIVA ELG+T++++
Sbjct: 216 YIVDLYFKKSIGDLRVASDAILNIAGVVEHGMFLDMATTVIVAGELGLTVKSE 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491358|gb|AFK33745.1| unknown [Medicago truncatula]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 216/233 (92%), Gaps = 2/233 (0%)

Query: 30  QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
           QD+LKKIAAYKAVE+VESGMVLGLGTGSTAKHAV RIGEL+RQGKL NI+GIPTS  THE
Sbjct: 36  QDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVARIGELIRQGKLKNIIGIPTSTITHE 95

Query: 90  QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
           QAVSLGIPLSDLDS+PV+DLAIDGADEVDP++NLVKGRGGSLLREKMVE ACKKFV IVD
Sbjct: 96  QAVSLGIPLSDLDSHPVIDLAIDGADEVDPYLNLVKGRGGSLLREKMVESACKKFVCIVD 155

Query: 150 ESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE--QPFVTDNGN 207
           ESKLV +LGGSGLAMPVEV+ +CWKFTA RLQ+LFE+ GCVAKLRT+GE  +P+VTDNGN
Sbjct: 156 ESKLVNYLGGSGLAMPVEVIRFCWKFTAGRLQNLFEESGCVAKLRTSGEKGEPYVTDNGN 215

Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           Y++DLY KK IGDL+VASD IL +AGVVEHGMFLDMATTVIVA ELG+T+++K
Sbjct: 216 YIVDLYFKKSIGDLRVASDAILNIAGVVEHGMFLDMATTVIVAGELGLTVKSK 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2038801	265	RPI2 "ribose-5-phosphate isome	0.892	0.875	0.778	6.8e-95
TAIR|locus:2026296	267	RSW10 "RADIAL SWELLING 10" [Ar	0.896	0.872	0.757	5.7e-91
TAIR|locus:2084898	276	EMB3119 "EMBRYO DEFECTIVE 3119	0.961	0.905	0.605	9.3e-75
TIGR_CMR|BA_2791	220	BA_2791 "ribose 5-phosphate is	0.830	0.981	0.401	2.8e-41
TIGR_CMR|SPO_1327	262	SPO_1327 "ribose 5-phosphate i	0.865	0.858	0.420	8.7e-40
DICTYBASE|DDB_G0276711	232	rpiA "ribose-5-phosphate isome	0.807	0.905	0.418	4.9e-37
UNIPROTKB|F1P520	235	RPIA "Uncharacterized protein"	0.865	0.957	0.412	1.7e-36
ZFIN|ZDB-GENE-041114-24	275	rpia "ribose 5-phosphate isome	0.85	0.803	0.407	1.7e-36
UNIPROTKB|P49247	311	RPIA "Ribose-5-phosphate isome	0.865	0.723	0.404	4.4e-36
UNIPROTKB|J9NX73	311	RPIA "Uncharacterized protein"	0.865	0.723	0.404	9.2e-36

TAIR|locus:2038801 RPI2 "ribose-5-phosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 183/235 (77%), Positives = 212/235 (90%)

Query:    28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
             LTQDELK+IAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSKKT
Sbjct:    31 LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query:    88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              EQA+SLGIPLSDLD++PV+DL+IDGADEVDPF+NLVKGRGGSLLREKM+EGA KKFVVI
Sbjct:    91 QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query:   148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDN 205
             VD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR  GE+   FVTDN
Sbjct:   151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRL-GEKGKAFVTDN 209

Query:   206 GNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
             GNY++D+++++D+GDL   SD ILRL GVVEHGMFLDMA+TVI+A ELGV I+NK
Sbjct:   210 GNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0008219 "cell death" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2026296 RSW10 "RADIAL SWELLING 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 181/239 (75%), Positives = 210/239 (87%)

Query:    28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
             LTQ+ELKKIAAYKAVEFVESGMV+GLGTGSTAKHAV RI ELLR+GKL +I+GIPTS  T
Sbjct:    27 LTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGIPTSTTT 86

Query:    88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
             HEQAVSLGIPLSDLDS+PVVDL+IDGADEVDP +NLVKGRGGSLLREKM+EGA KKFVVI
Sbjct:    87 HEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGASKKFVVI 146

Query:   148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR----TTGEQ--PF 201
             VDESKLV ++GGSGLA+PVEVVP+C  FT  +L++LF D GCVAKLR    + GE+  P 
Sbjct:   147 VDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNGEEAAPA 206

Query:   202 VTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
             VTDN NYV+DLYL++DIGDL+VAS+ ILR  GVVEHGMFL MATT+IVA + GVT++++
Sbjct:   207 VTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGVTVKDR 265

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0030244 "cellulose biosynthetic process" evidence=IMP

GO:0046109 "uridine biosynthetic process" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2084898 EMB3119 "EMBRYO DEFECTIVE 3119" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 152/251 (60%), Positives = 188/251 (74%)

Query:    11 SSVETGXXXXXXXXXVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELL 70
             SS  T          V L+QD+LKK+AA KAVE ++ GMVLGLGTGSTA  AVD+IG+LL
Sbjct:    26 SSPRTSVSFSVKAQSVALSQDDLKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLL 85

Query:    71 RQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGS 130
               G+L +IVGIPTSK+T EQA SLGIPL  LD++P +DLAIDGADEVDP ++LVKGRGG+
Sbjct:    86 SSGELYDIVGIPTSKRTEEQARSLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGA 145

Query:   131 LLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCV 190
             LLREKMVE    KF+V+ D++KLV  LGGSGLAMPVEVV +CW F   RLQDLF++ GC 
Sbjct:   146 LLREKMVEAVADKFIVVADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCE 205

Query:   191 AKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 249
             +KLR  G+ +P+VTDN NY+IDLY K  + D   A+  I +  GVVEHG+FL MAT+VI+
Sbjct:   206 SKLRVDGDGKPYVTDNSNYIIDLYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVII 265

Query:   250 ASELGVTIRNK 260
             A + GV +  K
Sbjct:   266 AGKNGVEVMTK 276

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0019253 "reductive pentose-phosphate cycle" evidence=NAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TIGR_CMR|BA_2791 BA_2791 "ribose 5-phosphate isomerase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 90/224 (40%), Positives = 136/224 (60%)

Query:    32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
             +LK+IA   A  FV+ GM +GLGTGSTA   + ++G+ +++G   +I  +PTSK+T   A
Sbjct:     2 DLKQIAGEYAATFVKDGMKIGLGTGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALA 59

Query:    92 VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
               L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + K+ ++IVDES
Sbjct:    60 QQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDES 119

Query:   152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVID 211
             K+V  LG     +P+E++P+ WK T  ++Q L    GC   LR    + F+TDN N +ID
Sbjct:   120 KVVTRLGT--FPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIID 173

Query:   212 LYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
                   I         +  + GVVE G+F++M +  I+ ++ G+
Sbjct:   174 CIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|SPO_1327 SPO_1327 "ribose 5-phosphate isomerase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 98/233 (42%), Positives = 148/233 (63%)

Query:    31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
             D+ K +AA +A + VE GM +GLGTGSTA   V  +G+++R+  L  + G+PTS +T + 
Sbjct:     9 DKAKFVAAKRAADLVEDGMRVGLGTGSTAAWLVRCLGDMVRKEGL-KMRGVPTSTRTAQL 67

Query:    91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
             A  +GI +  LD    +D+ IDGADE D  +NL+KG GG+LL+EK+V  A  + VVI D 
Sbjct:    68 AREVGIEVITLDEARWLDITIDGADEFDGDLNLIKGGGGALLQEKIVATASDQMVVIADL 127

Query:   151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLF---EDCGCVAKLRTTGEQPFVTDNGN 207
              K V  LG     +PVEV+P+ W+ T   L++     +  G  A LR  G+ PFVTD GN
Sbjct:   128 GKEVSRLGA--FPLPVEVIPFGWQTTQALLEETLISMDVLGRTATLRMNGDTPFVTDEGN 185

Query:   208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRN 259
             +++DL+L++ IG+ +  +  + ++ GVVE+G+F+D+  TV+V    G V IR+
Sbjct:   186 HILDLHLQR-IGNARQLALVLNQIPGVVENGLFIDICDTVVVGHGDGRVEIRD 237

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

DICTYBASE|DDB_G0276711 rpiA "ribose-5-phosphate isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 92/220 (41%), Positives = 135/220 (61%)

Query:    28 LTQDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK 86
             ++ D  KK+AAYKAV+ FV+ G  +G+G+GST K+AVDRI EL   G L N++ +PTS +
Sbjct:     1 MSLDNCKKVAAYKAVDDFVKDGCKIGIGSGSTIKYAVDRIKEL---G-LKNVICVPTSFQ 56

Query:    87 THEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVV 146
             + +  V  G+ LSDL   P +D+ IDGADEVD   NL+KG GG  L+EK+V  + KK V+
Sbjct:    57 STQLIVEAGLELSDLSRTPELDITIDGADEVDKDFNLIKGGGGCQLQEKIVAYSSKKLVI 116

Query:   147 IVDESKLVPHLGGSGL-AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVT 203
             + D +K    LG +    +P+EVVP  +    K+L+          KLR    +  P VT
Sbjct:   117 VADHTKESTELGENWKKGIPIEVVPMAYVPVMKKLES--SSFSLTPKLRMAVNKAGPVVT 174

Query:   204 DNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM 243
             DNGN++ID    K + ++   + +I  + GVVE G+F++M
Sbjct:   175 DNGNFIIDAQFSKPLSNIPQLAIDIKMIPGVVETGLFVNM 214

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA;ISS

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IC

GO:0016853 "isomerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

UNIPROTKB|F1P520 RPIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 97/235 (41%), Positives = 141/235 (60%)

Query:    31 DELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
             +E K++AA  AV+  V++  VLG+G+GST  HAV R+ E ++Q  L+ IV IPTS +  +
Sbjct:     3 EEAKRLAACAAVDKHVQNNQVLGIGSGSTIVHAVHRLAERVKQENLS-IVCIPTSFQARQ 61

Query:    90 QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
               +  G+ LSDLD +P +D+AIDGADEVD  +NL+KG GG L +EK+V G  K F+VI D
Sbjct:    62 LILQNGLTLSDLDRHPELDVAIDGADEVDSDLNLIKGGGGCLTQEKIVAGYAKCFIVIAD 121

Query:   150 ESKLVPHLGGSGL-AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNG 206
               K   +LG      +P+EV+P  +    + L   F   G  A+LR    +  P VTDNG
Sbjct:   122 YRKKSENLGEQWKKGIPIEVIPMAYVPVTRALTKNF---GGAAELRMAVSKAGPVVTDNG 178

Query:   207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRNK 260
             N+++D    K + +    +  I  + GVVE G+F++MA  V    E G V++R K
Sbjct:   179 NFILDWKFDK-VHEWSEVNTAIKMIPGVVETGLFINMAEVVYFGMEDGSVSVREK 232

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA

ZFIN|ZDB-GENE-041114-24 rpia "ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)" [Danio rerio (taxid:7955)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 92/226 (40%), Positives = 136/226 (60%)

Query:    31 DELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
             +E KK+AAY AV+  +++  V+G+G+GST  +AVDR+ E +RQ KL NIV +PTS +  +
Sbjct:    43 EEAKKLAAYAAVDNHIQNNQVIGVGSGSTIVYAVDRLAEKVRQEKL-NIVCVPTSFQARQ 101

Query:    90 QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
               +  G+PLSDLD +P +D+AIDGADEVD  + L+KG GG L +EK+V G  K F+VI D
Sbjct:   102 LILQHGLPLSDLDRHPELDVAIDGADEVDTALTLIKGGGGCLTQEKIVAGCAKHFIVIAD 161

Query:   150 ESKLVPHLGGSGL-AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
               K    LG      +PVEV+P  +   ++ +   F     V ++  +   P VTDN N+
Sbjct:   162 YRKDSKALGQQWKKGVPVEVIPMAYVPVSRAIARCFGG-EAVLRMAVSKAGPVVTDNSNF 220

Query:   209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 254
             ++D +  +   + K  +  I  + GVVE G+F+ MA  V    E G
Sbjct:   221 ILD-WKFEHAQNWKEVNTAIKMIPGVVETGLFVGMAERVYFGMEDG 265

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|P49247 RPIA "Ribose-5-phosphate isomerase" [Homo sapiens (taxid:9606)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 95/235 (40%), Positives = 138/235 (58%)

Query:    31 DELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
             +E KK+A   AVE  V +  VLG+G+GST  HAV RI E ++Q  L N+V IPTS +  +
Sbjct:    79 EEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENL-NLVCIPTSFQARQ 137

Query:    90 QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
               +  G+ LSDLD +P +DLAIDGADEVD  +NL+KG GG L +EK+V G   +F+VI D
Sbjct:   138 LILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIAD 197

Query:   150 ESKLVPHLGGSG-LAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNG 206
               K   +LG      +P+EV+P  +   ++ +   F   G V +LR    +  P VTDNG
Sbjct:   198 FRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVSQKF---GGVVELRMAVNKAGPVVTDNG 254

Query:   207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRNK 260
             N+++D    + +      +  I  + GVV+ G+F++MA  V    + G V +R K
Sbjct:   255 NFILDWKFDR-VHKWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSVNMREK 308

GO:0019693 "ribose phosphate metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=NAS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=NAS

GO:0005622 "intracellular" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006098 "pentose-phosphate shunt" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|J9NX73 RPIA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 95/235 (40%), Positives = 138/235 (58%)

Query:    31 DELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
             +E KK+A   AVE  V +  VLG+G+GST  HAV RI E ++Q  L N+V IPTS +  +
Sbjct:    79 EEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENL-NLVCIPTSFQARQ 137

Query:    90 QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
               +  G+ LSDLD +P +DLAIDGADEVD  +NL+KG GG L +EK+V G   +F+VI D
Sbjct:   138 LILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIAD 197

Query:   150 ESKLVPHLGGSG-LAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNG 206
               K   +LG      +P+EV+P  +   ++ +   F   G V +LR    +  P VTDNG
Sbjct:   198 FRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVTQKF---GGVIELRMAINKAGPVVTDNG 254

Query:   207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRNK 260
             N+++D    + +      +  I  + GVV+ G+F++MA  V    + G V +R K
Sbjct:   255 NFILDWKFDR-VHKWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSVNMREK 308

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1JHB8	RPIA_STRPD	5, ., 3, ., 1, ., 6	0.4608	0.8307	0.9515	yes	no
Q8EN78	RPIA1_OCEIH	5, ., 3, ., 1, ., 6	0.4410	0.85	0.9866	yes	no
A4WQX2	RPIA_RHOS5	5, ., 3, ., 1, ., 6	0.4291	0.8653	0.9	yes	no
Q9ZU38	RPIA_ARATH	5, ., 3, ., 1, ., 6	0.7736	0.9192	0.9018	yes	no
Q5SIR5	RPIA_THET8	5, ., 3, ., 1, ., 6	0.4622	0.8346	0.9559	yes	no
Q139E9	RPIA_RHOPS	5, ., 3, ., 1, ., 6	0.4242	0.8576	0.9612	yes	no
Q72J47	RPIA_THET2	5, ., 3, ., 1, ., 6	0.4666	0.8346	0.9559	yes	no
Q2K7M6	RPIA_RHIEC	5, ., 3, ., 1, ., 6	0.4311	0.8384	0.9396	yes	no
Q216Q6	RPIA_RHOPB	5, ., 3, ., 1, ., 6	0.4163	0.8653	0.9698	yes	no
O50083	RPIA_PYRHO	5, ., 3, ., 1, ., 6	0.4137	0.8461	0.9606	yes	no
B5XL07	RPIA_STRPZ	5, ., 3, ., 1, ., 6	0.4608	0.8307	0.9515	yes	no
Q81PL1	RPIA_BACAN	5, ., 3, ., 1, ., 6	0.4017	0.8307	0.9818	yes	no
Q7V003	RPIA_PROMP	5, ., 3, ., 1, ., 6	0.4383	0.8153	0.9177	yes	no
B8FL28	RPIA_DESAA	5, ., 3, ., 1, ., 6	0.4891	0.8384	0.9478	yes	no
Q9RW24	RPIA_DEIRA	5, ., 3, ., 1, ., 6	0.44	0.8384	0.9646	yes	no
Q63AF7	RPIA_BACCZ	5, ., 3, ., 1, ., 6	0.3973	0.8307	0.9818	yes	no
Q5M481	RPIA_STRT2	5, ., 3, ., 1, ., 6	0.4736	0.8423	0.9690	yes	no
Q3J101	RPIA_RHOS4	5, ., 3, ., 1, ., 6	0.4248	0.8653	0.8587	yes	no
Q5FQ98	RPIA_GLUOX	5, ., 3, ., 1, ., 6	0.4711	0.8230	0.9264	yes	no
A9VID8	RPIA_BACWK	5, ., 3, ., 1, ., 6	0.4080	0.8269	0.9728	yes	no
B2G5S0	RPIA_LACRJ	5, ., 3, ., 1, ., 6	0.4185	0.8461	0.9691	yes	no
B3QCR0	RPIA_RHOPT	5, ., 3, ., 1, ., 6	0.4415	0.8576	0.9612	yes	no
A7HS32	RPIA_PARL1	5, ., 3, ., 1, ., 6	0.4248	0.8653	0.9740	yes	no
Q03KJ8	RPIA_STRTD	5, ., 3, ., 1, ., 6	0.4736	0.8423	0.9690	yes	no
Q8CRC8	RPIA_STAES	5, ., 3, ., 1, ., 6	0.4192	0.8576	0.9695	yes	no
Q5LZM5	RPIA_STRT1	5, ., 3, ., 1, ., 6	0.4736	0.8423	0.9690	yes	no
Q839H2	RPIA_ENTFA	5, ., 3, ., 1, ., 6	0.4618	0.8230	0.9469	yes	no
Q5HLQ9	RPIA_STAEQ	5, ., 3, ., 1, ., 6	0.4192	0.8576	0.9695	yes	no
Q7NPM5	RPIA_GLOVI	5, ., 3, ., 1, ., 6	0.4695	0.8346	0.9434	yes	no
A5VI94	RPIA_LACRD	5, ., 3, ., 1, ., 6	0.4185	0.8461	0.9691	yes	no
Q6N8C3	RPIA_RHOPA	5, ., 3, ., 1, ., 6	0.4415	0.8576	0.9612	yes	no
Q81CG8	RPIA_BACCR	5, ., 3, ., 1, ., 6	0.4017	0.8307	0.9818	yes	no
Q03E35	RPIA_PEDPA	5, ., 3, ., 1, ., 6	0.4517	0.8423	0.9605	yes	no
Q5JH26	RPIA_PYRKO	5, ., 3, ., 1, ., 6	0.4181	0.8461	0.9606	yes	no
Q736S8	RPIA_BACC1	5, ., 3, ., 1, ., 6	0.4035	0.8269	0.9772	yes	no
Q07Q53	RPIA_RHOP5	5, ., 3, ., 1, ., 6	0.4248	0.8653	0.9336	yes	no
B9KYD3	RPIA_THERP	5, ., 3, ., 1, ., 6	0.4533	0.8346	0.9156	yes	no
Q9V0L6	RPIA_PYRAB	5, ., 3, ., 1, ., 6	0.4192	0.8346	0.9475	yes	no
Q2JSC9	RPIA_SYNJA	5, ., 3, ., 1, ., 6	0.4615	0.8615	0.9739	yes	no
Q6HHU6	RPIA_BACHK	5, ., 3, ., 1, ., 6	0.3973	0.8307	0.9818	yes	no
Q8Y8D3	RPIA_LISMO	5, ., 3, ., 1, ., 6	0.4027	0.8192	0.9508	yes	no
Q89NS9	RPIA_BRAJA	5, ., 3, ., 1, ., 6	0.3881	0.8653	0.9336	yes	no
B8G2V0	RPIA_CHLAD	5, ., 3, ., 1, ., 6	0.4778	0.8423	0.9240	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1.6	0.914
3rd Layer	5.3.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
PLN02384	264	PLN02384, PLN02384, ribose-5-phosphate isomerase	1e-172
cd01398	213	cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomeras	1e-100
TIGR00021	218	TIGR00021, rpiA, ribose 5-phosphate isomerase	4e-99
PRK00702	220	PRK00702, PRK00702, ribose-5-phosphate isomerase A	2e-97
COG0120	227	COG0120, RpiA, Ribose 5-phosphate isomerase [Carbo	9e-85
pfam06026	172	pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isom	3e-81
PRK13978	228	PRK13978, PRK13978, ribose-5-phosphate isomerase A	3e-56
cd00458	169	cd00458, SugarP_isomerase, SugarP_isomerase: Sugar	6e-04

>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase

 Score =  476 bits (1226), Expect = e-172
 Identities = 223/266 (83%), Positives = 238/266 (89%), Gaps = 8/266 (3%)

Query: 1   MAIA----ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 56
           MAIA    I +EK S      S LS   PVILTQDELKKIAAYKAVEFVESGMVLGLGTG
Sbjct: 1   MAIAYPPFIGSEKDSMEVG--SMLSPSSPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 58

Query: 57  STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADE 116
           STAKHAVDRIGELLRQGKL NI+GIPTSKKTHEQAVSLGIPLSDLDS+PVVDLAIDGADE
Sbjct: 59  STAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADE 118

Query: 117 VDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFT 176
           VDP +NLVKGRGGSLLREKM+EGACKKFVVIVDESKLV H+GGSGLAMPVEVVP+CWKFT
Sbjct: 119 VDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFT 178

Query: 177 AKRLQDLFEDCGCVAKLRT--TGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGV 234
           A++LQ LFE  GCVAKLRT   GE+PFVTDNGNY++DLY K+DIGDLKVASD ILRLAGV
Sbjct: 179 AEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRLAGV 238

Query: 235 VEHGMFLDMATTVIVASELGVTIRNK 260
           VEHGMFLDMATTVIVA ELGVTI++K
Sbjct: 239 VEHGMFLDMATTVIVAGELGVTIKDK 264

Length = 264

>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway

 Score =  290 bits (745), Expect = e-100
 Identities = 117/221 (52%), Positives = 150/221 (67%), Gaps = 10/221 (4%)

Query: 33  LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92
           LK+ AA  AV++VE GMV+GLGTGST  + ++ +GE +R+  L NIVG+PTS +T E A 
Sbjct: 1   LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEGL-NIVGVPTSFQTEELAR 59

Query: 93  SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152
            LGIPL+DLD  P +DLAIDGADEVDP +NL+KG GG+LLREK+V  A KKF+VI DESK
Sbjct: 60  ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119

Query: 153 LVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GEQPFVTDNGNYVI 210
           LV  LG   L  PVEVVP+ W + A+ L+ L    G    LR       P VTDNGNY++
Sbjct: 120 LVERLGEFPL--PVEVVPFAWSYVARELEKL----GGKPVLREGSGKGGPVVTDNGNYIL 173

Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVAS 251
           D++    I D +     +  + GVVEHG+FL+MA  VIV +
Sbjct: 174 DVHF-GTIEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT 213

This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea. Length = 213

>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase

 Score =  288 bits (739), Expect = 4e-99
 Identities = 119/224 (53%), Positives = 154/224 (68%), Gaps = 8/224 (3%)

Query: 33  LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92
           LK+ AA  A E+VE GMV+GLGTGST  + ++ +GE ++Q  L +IVG+PTSK+T E A 
Sbjct: 1   LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELAR 59

Query: 93  SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152
            LGIPLS LD  P +DLAIDGADEVDP + L+KG GG+LLREK+V  A K+F+VI DESK
Sbjct: 60  ELGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESK 119

Query: 153 LVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVID 211
           LV  LG   L  PVEVVP+ WK  A++L+ L    G    LR   +  P VTDNGNY++D
Sbjct: 120 LVDKLGKFPL--PVEVVPFAWKAVARKLEKL----GGEPTLRQGNKGGPVVTDNGNYILD 173

Query: 212 LYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
            +  K I D +   + +  + GVVE G+F+DMA TVIV ++ GV
Sbjct: 174 CHFGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDGV 217

This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway [Energy metabolism, Pentose phosphate pathway]. Length = 218

>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional

 Score =  283 bits (728), Expect = 2e-97
 Identities = 108/230 (46%), Positives = 147/230 (63%), Gaps = 11/230 (4%)

Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
           TQDELKK AA  A E+VE GM++GLGTGSTA + +D +GE +++G    I G+PTS+ + 
Sbjct: 2   TQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGL--IIGGVPTSEAST 59

Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
           E A  LGIPL DL+    +DL +DGADE+DP +NL+KG G +L REK+V  A K+F+ IV
Sbjct: 60  ELAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIV 119

Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
           DESKLV  LG   L  PVEV+P+     A+ L+ L    G   +LR     P VTDNGNY
Sbjct: 120 DESKLVDVLGKFPL--PVEVIPFARSAVARELEKL----GGQPELRMDE--PVVTDNGNY 171

Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIR 258
           ++D++  + I D +     +  + GVVEHG+F + A  V+V +  GV   
Sbjct: 172 ILDVHFGR-IPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDGVKTL 220

Length = 220

>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]

 Score =  252 bits (645), Expect = 9e-85
 Identities = 110/235 (46%), Positives = 152/235 (64%), Gaps = 12/235 (5%)

Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
            QDELKK AA  A+E+V+ GMV+GLGTGSTA + ++ +G  ++     +I G+PTS +T 
Sbjct: 2   DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGEL--DIGGVPTSFQTE 59

Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
           E A  LGIP+S L+    +DLAIDGADEVDP +NL+KG GG+LLREK+V  A K+F+VIV
Sbjct: 60  ELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIV 119

Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNG 206
           DESKLV  LG   L  PVEV+P+      ++L+ L    G    LR    +  P +TDNG
Sbjct: 120 DESKLVEVLGKFPL--PVEVIPFARSAVLRKLEKL----GGKPTLREGEGKDGPVITDNG 173

Query: 207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA-SELGVTIRNK 260
           NY++D++  + I D +     +  + GVVE+G+F   A  VI+A ++ GV I  K
Sbjct: 174 NYILDVHFGR-IEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227

Length = 227

>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

 Score =  241 bits (617), Expect = 3e-81
 Identities = 98/178 (55%), Positives = 122/178 (68%), Gaps = 7/178 (3%)

Query: 78  IVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMV 137
           IVG+PTS +T E A  LGIPLSDLD    +DLAIDGADEVDP +NL+KG GG+LLREK+V
Sbjct: 1   IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIV 60

Query: 138 EGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG 197
             A KKF+VIVDESKLV  LG   L  PVEVVP+ W +  +RL++L    G   KLR   
Sbjct: 61  ASAAKKFIVIVDESKLVDVLGKFPL--PVEVVPFAWSYVLRRLEEL----GGEPKLRMGE 114

Query: 198 EQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
             P VTDNGNY++D++  + I D +     +  + GVVEHG+FL MA  VIV ++ GV
Sbjct: 115 GGPVVTDNGNYILDVHFGR-IEDPEELEKELKNIPGVVEHGLFLGMADKVIVGTKDGV 171

This family consists of several ribose 5-phosphate isomerase A or phosphoriboisomerase A (EC:5.3.1.6) from bacteria, eukaryotes and archaea. Length = 172

>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional

 Score =  179 bits (456), Expect = 3e-56
 Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 6/229 (2%)

Query: 32  ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
            LK +     +  +   M LG+GTGST +  + ++ +L+++ +  NI G+ TS K    A
Sbjct: 6   ALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLA 64

Query: 92  VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
             LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK+++    +FVV+VDE+
Sbjct: 65  KELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDET 124

Query: 152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVID 211
           K+V +LG +   +PVEV  + W    ++++   +      + R   +  F+TDNGNY++D
Sbjct: 125 KIVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILD 180

Query: 212 LYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
             L K I   K   + ++ L GV E G FLDMA  VIV ++ GV I  K
Sbjct: 181 CKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228

Length = 228

>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL)

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 36/115 (31%)

Query: 49  MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-------------HEQAVSLG 95
           MV+GLGTGST  +    +GE L++G++++IVG PT ++                 A    
Sbjct: 22  MVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHD 81

Query: 96  IPLSD----------------------LDSYPVVDLAIDGAD-EVDPFMNLVKGR 127
           I  +                       LD    +DLA+DGA       + LV GR
Sbjct: 82  IIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAGYRAGTVIVLVDGR 136

RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
PLN02384	264	ribose-5-phosphate isomerase	100.0
PRK13978	228	ribose-5-phosphate isomerase A; Provisional	100.0
COG0120	227	RpiA Ribose 5-phosphate isomerase [Carbohydrate tr	100.0
PRK00702	220	ribose-5-phosphate isomerase A; Provisional	100.0
TIGR00021	218	rpiA ribose 5-phosphate isomerase. This model desc	100.0
cd01398	213	RPI_A RPI_A: Ribose 5-phosphate isomerase type A (	100.0
PF06026	173	Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (ph	100.0
KOG3075	261	consensus Ribose 5-phosphate isomerase [Carbohydra	100.0
PF00455	161	DeoRC: DeoR C terminal sensor domain; InterPro: IP	99.93
PRK10906	252	DNA-binding transcriptional repressor GlpR; Provis	99.91
PRK10681	252	DNA-binding transcriptional repressor DeoR; Provis	99.91
PRK13509	251	transcriptional repressor UlaR; Provisional	99.91
PRK09802	269	DNA-binding transcriptional regulator AgaR; Provis	99.9
PRK10434	256	srlR DNA-bindng transcriptional repressor SrlR; Pr	99.9
PRK10411	240	DNA-binding transcriptional activator FucR; Provis	99.9
COG1349	253	GlpR Transcriptional regulators of sugar metabolis	99.9
PRK08335	275	translation initiation factor IF-2B subunit alpha;	98.29
COG1184	301	GCD2 Translation initiation factor 2B subunit, eIF	98.27
TIGR00524	303	eIF-2B_rel eIF-2B alpha/beta/delta-related unchara	98.25
PRK08535	310	translation initiation factor IF-2B subunit delta;	98.24
TIGR00511	301	ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e	98.24
TIGR00512	331	salvage_mtnA S-methyl-5-thioribose-1-phosphate iso	98.1
PRK05720	344	mtnA methylthioribose-1-phosphate isomerase; Revie	97.98
COG2057	225	AtoA Acyl CoA:acetate/3-ketoacid CoA transferase,	97.9
PF01008	282	IF-2B: Initiation factor 2 subunit family; InterPr	97.86
KOG1466	313	consensus Translation initiation factor 2B, alpha	97.83
PRK05772	363	translation initiation factor IF-2B subunit alpha;	97.81
PRK06371	329	translation initiation factor IF-2B subunit alpha;	97.64
PRK06036	339	translation initiation factor IF-2B subunit alpha;	97.54
PRK08334	356	translation initiation factor IF-2B subunit beta;	97.31
PRK06372	253	translation initiation factor IF-2B subunit delta;	97.22
TIGR02428	207	pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit	97.01
PRK09920	219	acetyl-CoA:acetoacetyl-CoA transferase subunit alp	96.6
TIGR02429	222	pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit	96.38
TIGR03458	485	YgfH_subfam succinate CoA transferases. A closely	96.03
COG1788	220	AtoD Acyl CoA:acetate/3-ketoacid CoA transferase,	96.03
PF04198	255	Sugar-bind: Putative sugar-binding domain; InterPr	95.8
KOG1465	353	consensus Translation initiation factor 2B, beta s	95.66
COG2390	321	DeoR Transcriptional regulator, contains sigma fac	95.48
KOG1467	556	consensus Translation initiation factor 2B, delta	95.21
cd00458	169	SugarP_isomerase SugarP_isomerase: Sugar Phosphate	94.83
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	94.61
COG0182	346	Predicted translation initiation factor 2B subunit	93.89
PF02550	198	AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase	93.5
PF04223	466	CitF: Citrate lyase, alpha subunit (CitF); InterPr	92.27
COG0427	501	ACH1 Acetyl-CoA hydrolase [Energy production and c	91.87
PRK15418	318	transcriptional regulator LsrR; Provisional	91.46
COG3051	513	CitF Citrate lyase, alpha subunit [Energy producti	88.45
PF03927	79	NapD: NapD protein; InterPro: IPR005623 This entry	87.13
PF04223	466	CitF: Citrate lyase, alpha subunit (CitF); InterPr	85.32
PF01037	74	AsnC_trans_reg: AsnC family; InterPro: IPR019887 T	83.2
TIGR01110	543	mdcA malonate decarboxylase, alpha subunit. This m	81.13
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	81.07
PF01144	217	CoA_trans: Coenzyme A transferase; InterPro: IPR00	80.42

>PLN02384 ribose-5-phosphate isomerase

Probab=100.00  E-value=2.5e-65  Score=457.95  Aligned_cols=256  Identities=87%  Similarity=1.275  Sum_probs=227.4

Q ss_pred             Ccee----ecccCCCccccC--CCCCCCCCCCCCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCC
Q 024953            1 MAIA----ISAEKPSSVETG--LSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGK   74 (260)
Q Consensus         1 ~~~~----~~~~~~~~~~~~--~~~~~~~~~~m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~   74 (260)
                      ||||    |..||.| .|.|  |||.||.|.   +++++|+++|++|++||++||+||||||||+.+++++|+++.+++.
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~m---~~~~~K~~aA~~A~~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~   76 (264)
T PLN02384          1 MAIAYPPFIGSEKDS-MEVGSMLSPSSPVIL---TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGK   76 (264)
T ss_pred             CCCCCCccccccccc-hhhcCcCCCCCCCCC---CHHHHHHHHHHHHHHhccCCCEEEecchHHHHHHHHHHHHhhhhcc
Confidence            5665    3445543 4444  777776654   3566899999999999999999999999999999999998876565


Q ss_pred             CCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc
Q 024953           75 LTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV  154 (260)
Q Consensus        75 l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~  154 (260)
                      ++++++|++|.+++.+|++.|+++..+.+..++|+||||||+||++++++||+|+|++|||+++++|+++|+|+|+||++
T Consensus        77 l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V  156 (264)
T PLN02384         77 LKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLV  156 (264)
T ss_pred             ccceEEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCccee
Confidence            65699999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCC
Q 024953          155 PHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLA  232 (260)
Q Consensus       155 ~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~  232 (260)
                      ++||..+|||||||+|++|.++.++|+++|...|+.+++|++  +++|++|||||||+||+|+.++.||.+++..|++||
T Consensus       157 ~~Lg~~~~plPVEV~p~a~~~v~~~L~~l~~~~g~~~~lR~~~~g~~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~ip  236 (264)
T PLN02384        157 KHIGGSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRLA  236 (264)
T ss_pred             cccCCCCCCEEEEECccHHHHHHHHHHHHhhccCCceEEeccCCCCCcEECCCCCEEEEecCCCCCCCHHHHHHHHhCCC
Confidence            999852379999999999999999999986655788999986  347999999999999999844999999999999999


Q ss_pred             cEEeeccccccccEEEEEcCCCeEEecC
Q 024953          233 GVVEHGMFLDMATTVIVASELGVTIRNK  260 (260)
Q Consensus       233 GVve~GlF~~~~~~viv~~~~g~~~~~~  260 (260)
                      ||||||||.++++.|++|+++|+++-.|
T Consensus       237 GVVE~GLF~~~a~~vivg~~~Gv~~~~~  264 (264)
T PLN02384        237 GVVEHGMFLDMATTVIVAGELGVTIKDK  264 (264)
T ss_pred             cEeccCcccCcCCEEEEEcCCceEEeCC
Confidence            9999999999999999999999876543

>PRK13978 ribose-5-phosphate isomerase A; Provisional

Probab=100.00  E-value=5e-65  Score=448.98  Aligned_cols=227  Identities=38%  Similarity=0.630  Sum_probs=213.9

Q ss_pred             CCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcc
Q 024953           27 ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPV  106 (260)
Q Consensus        27 m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~  106 (260)
                      ||++++.|+++|++|++||++||+||||||||+.+++++|+++.+.+.+ ++++|++|..++.+|+++|+++..+.+..+
T Consensus         1 ~m~~~~~K~~aa~~A~~~V~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l-~i~~VptS~~t~~~a~~~Gipl~~l~~~~~   79 (228)
T PRK13978          1 MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDVDH   79 (228)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCEEEeCchHHHHHHHHHHHHHhhccCc-cEEEEeCcHHHHHHHHHcCCcEechhhCCc
Confidence            5677788999999999999999999999999999999999988765666 799999999999999999999999988889


Q ss_pred             ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953          107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED  186 (260)
Q Consensus       107 ~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~  186 (260)
                      +|+||||||+||++++++||+|+|++|||+++++|+++|+++|+||++++||.+ |||||||+||+|+++.++|+++   
T Consensus        80 iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~A~~~iii~D~sK~v~~Lg~~-~plPVEV~p~~~~~v~~~l~~l---  155 (228)
T PRK13978         80 IDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYHILRKIESY---  155 (228)
T ss_pred             eeEEEecCceecCCccEEecCcHHHHHHHHHHHhcCcEEEEEeCcceecccCCC-CCeEEEEcccHHHHHHHHHHHc---
Confidence            999999999999999999999999999999999999999999999999999963 9999999999999999999996   


Q ss_pred             CCC-ceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953          187 CGC-VAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK  260 (260)
Q Consensus       187 ~g~-~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~  260 (260)
                       |+ .+.+|+++++||+|||||||+||+|+. +.||++++..|++||||||||||.++++.+++|+++|+++++|
T Consensus       156 -g~~~~~~R~~~~~p~vTDnGN~IlD~~f~~-i~dp~~l~~~L~~ipGVVe~GlF~~~~~~viv~~~~G~~~~~~  228 (228)
T PRK13978        156 -ADIKVERRVNEDVAFITDNGNYILDCKLPK-GIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK  228 (228)
T ss_pred             -CCCCcEEEecCCCceECCCCcEEEEecCCC-cCCHHHHHHHHhcCCcEeeeCCccCcCCEEEEEcCCceEEeCC
Confidence             64 788887778899999999999999996 8999999999999999999999999999999999999988875

>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-63  Score=437.05  Aligned_cols=223  Identities=49%  Similarity=0.777  Sum_probs=206.7

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD  108 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D  108 (260)
                      .++++|+..|++|+++|++||+||||||||+.+|+++|+++.+.+ + +++.||+|.+++.+|++.|+++.+++...++|
T Consensus         2 ~~~~~K~~aa~~A~~~v~~gmviGlGTGST~~~fI~~Lg~~~~~e-~-~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lD   79 (227)
T COG0120           2 DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGE-L-DIGGVPTSFQTEELARELGIPVSSLNEVDSLD   79 (227)
T ss_pred             chHHHHHHHHHHHHHHhcCCCEEEEcCcHHHHHHHHHHHHhhccC-c-cEEEEeCCHHHHHHHHHcCCeecCccccCccc
Confidence            466789999999999999999999999999999999999754323 4 79999999999999999999999998877899


Q ss_pred             EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCC
Q 024953          109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG  188 (260)
Q Consensus       109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g  188 (260)
                      +||||||+||++++++||+|+|++|||+++++|+++|+++|+||++++||  +|||||||+|++|.+|.++++++    |
T Consensus        80 l~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG--~fplPVEVip~a~~~v~r~l~~~----g  153 (227)
T COG0120          80 LAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLG--KFPLPVEVIPFARSAVLRKLEKL----G  153 (227)
T ss_pred             eEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcC--CCCcCEEEchhHHHHHHHHHHHh----C
Confidence            99999999999999999999999999999999999999999999999999  59999999999999999999986    9


Q ss_pred             CceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEEecC
Q 024953          189 CVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRNK  260 (260)
Q Consensus       189 ~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~~~~  260 (260)
                      +++.||++  ++||+||||||||+||+|+. +.||.+|+++|++||||||||||.++++.++++..+| ++++++
T Consensus       154 ~~~~lR~~~~k~GpviTDnGN~IlDv~~~~-i~dp~~le~~l~~IpGVVE~GlF~~~~~~~ii~g~~~~v~~~~~  227 (227)
T COG0120         154 GKPTLREGEGKDGPVITDNGNYILDVHFGR-IEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK  227 (227)
T ss_pred             CCccccccccCCCCEEeeCCCEEEEecCCC-cCCHHHHHHHHhCCCCEEEecccccccccEEEEeCCCCEEEecC
Confidence            99999963  77899999999999999996 9999999999999999999999999887666666665 888764

>PRK00702 ribose-5-phosphate isomerase A; Provisional

Probab=100.00  E-value=6.7e-63  Score=435.33  Aligned_cols=217  Identities=49%  Similarity=0.796  Sum_probs=203.1

Q ss_pred             hHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccE
Q 024953           30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDL  109 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~  109 (260)
                      ++++|++||++|+++|++||+||||+|||+.+++++|+++.+.+ + ++++||||..++.++...|++++.+.+..++|+
T Consensus         3 ~~~~K~~IA~~Aa~lI~dg~~IgLgsGST~~~l~~~L~~~~~~~-~-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iD~   80 (220)
T PRK00702          3 QDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEG-L-IIGGVPTSEASTELAKELGIPLFDLNEVDSLDL   80 (220)
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhhccC-C-CEEEECCcHHHHHHHHhCCCeEEcHHHCCccCE
Confidence            56789999999999999999999999999999999998753222 3 699999999999999888999999976559999


Q ss_pred             EEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCC
Q 024953          110 AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC  189 (260)
Q Consensus       110 af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~  189 (260)
                      ||+|||+||+++++++++++|++|||+++++|+++|+|+|+|||+++||  +||+||||+|++|+++.++|+++    |+
T Consensus        81 afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~~~vil~D~sK~v~~lg--~~~lPvEV~p~~~~~v~~~l~~~----g~  154 (220)
T PRK00702         81 YVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVDESKLVDVLG--KFPLPVEVIPFARSAVARELEKL----GG  154 (220)
T ss_pred             EEECCCeECCCCCcEECcHHHHHHHHHHHHhcCcEEEEEEcchhhhhcC--CCCccEEECccHHHHHHHHHHHh----CC
Confidence            9999999999999999999999999999999999999999999999999  49999999999999999999996    88


Q ss_pred             ceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEE
Q 024953          190 VAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI  257 (260)
Q Consensus       190 ~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~  257 (260)
                      .++||++  +||+|||||||+||+|+. +.||.+++.+|++||||||||||.++++.|++|+++|+++
T Consensus       155 ~~~~R~~--~p~vTd~Gn~IiD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~~~v~~~~~~g~~~  219 (220)
T PRK00702        155 QPELRMD--EPVVTDNGNYILDVHFGR-IPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDGVKT  219 (220)
T ss_pred             cceEeCC--CCEECCCCCEEEEecCCC-cCCHHHHHHHhcCCCcEeeeccCccCCCEEEEEcCCcEEe
Confidence            9999986  799999999999999995 9999999999999999999999999999999999999765

>TIGR00021 rpiA ribose 5-phosphate isomerase

Probab=100.00  E-value=5.4e-62  Score=428.86  Aligned_cols=215  Identities=54%  Similarity=0.858  Sum_probs=201.4

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEc
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDG  113 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~G  113 (260)
                      |++||++|+++|++||+||||+|||+.+++++|+++.+++.+ ++++||||+.++.+|.+.|++++.+....++|+||+|
T Consensus         2 K~~IA~~A~~~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iDiafdG   80 (218)
T TIGR00021         2 KRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELARELGIPLSSLDEVPELDLAIDG   80 (218)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhccCC-CEEEEeCCHHHHHHHHHCCCCEEcHhHCCccCEEEEC
Confidence            899999999999999999999999999999999876434455 7999999999999998889999999775699999999


Q ss_pred             cCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEE
Q 024953          114 ADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL  193 (260)
Q Consensus       114 adgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~  193 (260)
                      ||+||++++++++++++++|||+++++|+++|+|+|+|||+++||  ++||||||.|++|.++.++|+++    |+++++
T Consensus        81 aD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg--~~plPvEV~p~~~~~v~~~l~~~----g~~~~~  154 (218)
T TIGR00021        81 ADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKLVDKLG--KFPLPVEVVPFAWKAVARKLEKL----GGEPTL  154 (218)
T ss_pred             CCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEchhhhcccC--CCCccEEECccHHHHHHHHHHHc----CCCcEE
Confidence            999999999999999999999999989999999999999999999  49999999999999999999996    889999


Q ss_pred             eec-CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCe
Q 024953          194 RTT-GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV  255 (260)
Q Consensus       194 R~~-~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~  255 (260)
                      |++ +++|++|||||||+|++|..++.||.+++++|++||||||||||.++++.+++|+++|+
T Consensus       155 R~~~~~~p~vTdnGN~IiD~~~~~~~~d~~~l~~~l~~i~GVve~GlF~~~~~~v~~~~~~g~  217 (218)
T TIGR00021       155 RQGNKGGPVVTDNGNYILDCHFGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDGV  217 (218)
T ss_pred             eecCCCCcEECCCCCEEEEeeCCCCCCCHHHHHHHHhcCCCEEEeeeecCCCCEEEEEeCCCc
Confidence            985 67899999999999999985489999999999999999999999999999999999984

This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.

>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway

Probab=100.00  E-value=6.6e-60  Score=414.83  Aligned_cols=211  Identities=55%  Similarity=0.882  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEE
Q 024953           33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAID  112 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~  112 (260)
                      .|++||++|+++|++||+||||+|||+.+++++|+++.+.+. .++|+||||+.++.++.+.+++++.+++.+++|+||+
T Consensus         1 ~K~~IA~~A~~~I~~g~~I~ldsGST~~~l~~~L~~~~~~~~-~~itvVTnS~~~a~~l~~~~i~vi~lg~~~~~D~af~   79 (213)
T cd01398           1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEG-LNIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAID   79 (213)
T ss_pred             CHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHhhhccC-CCEEEEeCcHHHHHHHHhCCCeEEeCCCccccCEEEE
Confidence            389999999999999999999999999999999987532222 2799999999999988778999999998899999999


Q ss_pred             ccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCceE
Q 024953          113 GADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK  192 (260)
Q Consensus       113 GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~  192 (260)
                      |||++|++++++++.+++++|||+++++|+++|+|+|||||+++||  ++||||||.|++|.++.++|+++    |+.++
T Consensus        80 Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~--~~~lPvEV~p~~~~~v~~~l~~~----g~~~~  153 (213)
T cd01398          80 GADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLG--EFPLPVEVVPFAWSYVARELEKL----GGKPV  153 (213)
T ss_pred             CCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCC--CCCeeEEEChhhHHHHHHHHHHc----CCCcE
Confidence            9999999888899999999999999888999999999999999999  39999999999999999999997    99999


Q ss_pred             Eeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEc
Q 024953          193 LRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVAS  251 (260)
Q Consensus       193 ~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~  251 (260)
                      ||++  +++|++|||||||+||+|+. +.||.+++++|++||||||||||.++++.|++|+
T Consensus       154 ~R~~~~~~~p~~Td~gn~i~D~~~~~-~~~~~~l~~~l~~i~GVve~GlF~~~~~~v~~~~  213 (213)
T cd01398         154 LREGSGKGGPVVTDNGNYILDVHFGT-IEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT  213 (213)
T ss_pred             EcccCCCCCcEECCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeCCCcCCCCEEEEeC
Confidence            9986  47899999999999999996 8999999999999999999999999999999984

This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.

>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []

Probab=100.00  E-value=1.8e-52  Score=356.12  Aligned_cols=173  Identities=54%  Similarity=0.877  Sum_probs=151.2

Q ss_pred             EEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCC
Q 024953           78 IVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHL  157 (260)
Q Consensus        78 itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~l  157 (260)
                      |++|++|..++.++++.|+++..+.+..++|++|||||+||.+++++||+|+|++|||+++++|+++|+++|++|++++|
T Consensus         1 I~~V~tS~~T~~~a~~~Gi~l~~~~~~~~iDl~iDGaDevd~~l~lIKGgGgallrEKiva~~a~~~I~i~DesK~v~~L   80 (173)
T PF06026_consen    1 IVGVPTSEATELLARKLGIPLVDLDEVDRIDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKRFIIIVDESKLVEKL   80 (173)
T ss_dssp             EEEEESSHHHHHHHHHTT-EBE-GGGSSSEEEEEEE-SEEETTSEEE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred             CEEECChHHHHHHHHHcCCcEEccccCCcceEEEECchhhcCCCCEEECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence            58899999999999999999999988789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEee
Q 024953          158 GGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEH  237 (260)
Q Consensus       158 g~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~  237 (260)
                      |  ++||||||+|++|..|.++|+++   +|+.++||+++++|++|||||||+||+|+. +.||++++++|++|||||||
T Consensus        81 g--~~plPvEV~p~a~~~v~~~l~~~---~G~~~~lR~~~~~p~vTDnGN~IlD~~f~~-i~d~~~l~~~L~~i~GVVe~  154 (173)
T PF06026_consen   81 G--KFPLPVEVVPFAWSYVLRRLKEL---LGGKPVLRMASGGPFVTDNGNYILDVHFGP-IDDPEELERELKSIPGVVET  154 (173)
T ss_dssp             T--SS-EEEEE-GGGHHHHHHHHHHT---TT-EEEE-EETTEE-B-TTS-EEEEEESSS-BSSHHHHHHHHHTSTTEEEE
T ss_pred             C--CCceeEEEcHHHHHHHHHHHHHh---cCCCceEccCCCCCEEeCCCCEEEEecCCC-CCCHHHHHHHHhCCCCEEeE
Confidence            9  49999999999999999999993   399999999877999999999999999995 99999999999999999999


Q ss_pred             ccccccccEEEEEcCCCeE
Q 024953          238 GMFLDMATTVIVASELGVT  256 (260)
Q Consensus       238 GlF~~~~~~viv~~~~g~~  256 (260)
                      |||.++++.+++|+++|++
T Consensus       155 GlF~~~~~~viv~~~~G~~  173 (173)
T PF06026_consen  155 GLFLGMADKVIVGGEDGVK  173 (173)
T ss_dssp             SEE-SS-SEEEEEETTEEE
T ss_pred             CcCcCcCCEEEEEcCCCcC
Confidence            9999999999999999975

This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....

>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-51  Score=362.99  Aligned_cols=234  Identities=55%  Similarity=0.885  Sum_probs=215.0

Q ss_pred             CCCCChHHHHHHHHHHHHh-cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCC
Q 024953           25 PVILTQDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDS  103 (260)
Q Consensus        25 ~~m~~~~~~K~~IA~~Aa~-lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~  103 (260)
                      +.+..+++.|++.|++|.+ ++++|++||||||||+.+.+++|.+.+.++.+.+++.|++|.++++++.+.|+++..++.
T Consensus        19 ~~~~~~e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~~d~   98 (261)
T KOG3075|consen   19 ESLSPQEEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSDLDS   98 (261)
T ss_pred             cccCchHHHHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchhhHHHHHhcCCccccCCC
Confidence            5577889999999999998 667799999999999999999999887667777999999999999999999999999999


Q ss_pred             CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCc-cccEEEecCcHHHHHHHHHH
Q 024953          104 YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGL-AMPVEVVPYCWKFTAKRLQD  182 (260)
Q Consensus       104 ~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~-~lPvEV~p~~~~~v~~~l~~  182 (260)
                      ...+|++|+|||++|+++++++++|+++++||++.-+|+++|+++|++|+.+.||.... .+||||+|++|..+.+.|.+
T Consensus        99 hp~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~~~l~~  178 (261)
T KOG3075|consen   99 HPVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSE  178 (261)
T ss_pred             CceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHHHHHHHhhhh
Confidence            89999999999999999999999999999999999999999999999999977765433 49999999999999999999


Q ss_pred             hhhhCCCceEEee---cCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEEe
Q 024953          183 LFEDCGCVAKLRT---TGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIR  258 (260)
Q Consensus       183 ~~~~~g~~~~~R~---~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~~  258 (260)
                       |. .|+.+.||+   ++.+||||||||+|+|++|..++.|+.+++.+++.+|||||||||+++++.+|++.++| +.+.
T Consensus       179 -~~-~g~~~~lR~g~~~k~~P~VTDngN~IiDv~fe~~i~~~~~~~~~i~~~pGVVe~GLfi~~~~~v~ia~~~gsv~v~  256 (261)
T KOG3075|consen  179 -FS-FGCEAKLRMGAEGKAGPYVTDNGNFIIDVQFETPIRDLNAASTSIKKIPGVVEHGLFIGMADTVIIAESDGSVSVT  256 (261)
T ss_pred             -hh-ccchheecccccccCCCeEeeCCCeEEEEEeecccCCHHHHHHHHhhcCCccccceEeecccEEEEEecCCcccee
Confidence             22 599999997   36799999999999999997679999999999999999999999999999999999999 7665


Q ss_pred             cC
Q 024953          259 NK  260 (260)
Q Consensus       259 ~~  260 (260)
                      +|
T Consensus       257 ~~  258 (261)
T KOG3075|consen  257 KK  258 (261)
T ss_pred             ec
Confidence            43

>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=99.93  E-value=6.7e-26  Score=191.09  Aligned_cols=120  Identities=21%  Similarity=0.216  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhC-CCcEEEcC------
Q 024953           30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL-GIPLSDLD------  102 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~-gi~v~~l~------  102 (260)
                      +.++|++||++|+++|+|||+||||+|||+++++++|.++      +++||||||+.++..|.+. +++++.++      
T Consensus         2 n~~~K~~IA~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~   75 (161)
T PF00455_consen    2 NAEEKRAIARKAASLIEDGDTIFLDSGTTTLELAKYLPDK------KNLTVVTNSLPIANELSENPNIEVILLGGEVNPK   75 (161)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEECchHHHHHHHHhhcC------CceEEEECCHHHHHHHHhcCceEEEEeCCEEEcC
Confidence            4578999999999999999999999999999999999875      3899999999999999765 66666543      


Q ss_pred             -------------CCccccEEEEccCcccCCC-CcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 -------------SYPVVDLAIDGADEVDPFM-NLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 -------------~~~~~D~af~GadgId~~~-~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                                   +.+++|++|+||+|++.++ .+..+..++.+|++|+. +|+++|+|+|||||+.+
T Consensus        76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~-~s~~~ill~D~sKf~~~  142 (161)
T PF00455_consen   76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIE-NSKQVILLADSSKFGRN  142 (161)
T ss_pred             CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHH-hcCeEEEEeChhhcCCe
Confidence                         4689999999999999964 55677889999999885 68999999999999543

This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].

>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional

Probab=99.91  E-value=4.1e-24  Score=192.25  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=104.6

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH-hCCCcEEEcC----
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV-SLGIPLSDLD----  102 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~-~~gi~v~~l~----  102 (260)
                      ..+.++|++||++|+++|+|||+||||+|||+++++++|+++      +++||||||+.++..+. ..++.++.++    
T Consensus        72 ~~~~~~K~~IA~~Aa~~I~~g~tIflD~GtT~~~la~~L~~~------~~ltVvTNsl~ia~~l~~~~~~~villGG~~~  145 (252)
T PRK10906         72 ATQTEEKERIARKVASQIPNGATLFIDIGTTPEAVAHALLNH------SNLRIVTNNLNVANTLMAKEDFRIILAGGELR  145 (252)
T ss_pred             hhcHHHHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhcCC------CCcEEEECcHHHHHHHhhCCCCEEEEECCEEe
Confidence            345678999999999999999999999999999999999764      27999999999998886 4567776553    


Q ss_pred             ---------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 ---------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 ---------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                                     +.+++|+||+||+|+|.+++ +..+..++.+|++|+. +|+++|+|+|||||+.+
T Consensus       146 ~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~-~a~~~illaD~sKf~~~  214 (252)
T PRK10906        146 SRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIE-NSRHVMLVVDHSKFGRN  214 (252)
T ss_pred             cCCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHH-hcCcEEEEEccchhCCc
Confidence                           46899999999999998754 5677889999999885 58999999999999643

>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional

Probab=99.91  E-value=3.8e-24  Score=192.30  Aligned_cols=121  Identities=19%  Similarity=0.071  Sum_probs=103.6

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC----
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD----  102 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~----  102 (260)
                      ..+.++|++||++|+++|+|||+||||+|||+++++++|++.      .++||||||+.++..+.. .+++++.++    
T Consensus        73 ~~~~~~K~~IA~~Aa~lI~~g~tIflD~GtT~~~la~~L~~~------~~ltvvTnsl~i~~~l~~~~~~~villGG~~~  146 (252)
T PRK10681         73 SRLVEEKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNE------LPFTAVCYSLNTFLALQEKPHCRAILCGGEFH  146 (252)
T ss_pred             HhCHHHHHHHHHHHHhhcCCCCEEEEECCccHHHHHHhcCCC------CCeEEEECCHHHHHHHhhCCCCEEEEECcEEe
Confidence            345578999999999999999999999999999999999753      269999999999988864 566766543    


Q ss_pred             ---------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCccc
Q 024953          103 ---------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVP  155 (260)
Q Consensus       103 ---------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~  155 (260)
                                     +.+++|+||+||+|+|.+++ +..+..++.+|++|+. +|+++|+|+|||||+.
T Consensus       147 ~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~-~a~~~illaD~sKf~~  214 (252)
T PRK10681        147 ASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMA-MAQKHVLVVDHSKFGK  214 (252)
T ss_pred             cCcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHH-hhCcEEEEEcccccCc
Confidence                           46899999999999998754 5677889999998885 5899999999999964

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=99.91  E-value=9.1e-24  Score=189.80  Aligned_cols=120  Identities=16%  Similarity=0.058  Sum_probs=102.8

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC-----
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD-----  102 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~-----  102 (260)
                      .+.++|++||++|+++|+|||+||||+|||+++++++|.+.       ++||||||+.++..+.. .+++++.++     
T Consensus        75 ~~~~~K~~IA~~Aa~~I~~g~~Ifld~GsT~~~la~~L~~~-------~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~  147 (251)
T PRK13509         75 QNHDEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGK-------PVQIITNYLPLANYLIDQEHDSVIIMGGQYNK  147 (251)
T ss_pred             hCHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHhCCC-------CeEEEeCCHHHHHHHHhCCCCEEEEECCeEcC
Confidence            45578999999999999999999999999999999999753       69999999999988864 456666543     


Q ss_pred             -------------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 -------------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 -------------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                                   +.+++|+||+||+|+|.+|.+..+..++.+|++|+. +|+++|+|+|||||+.+
T Consensus       148 ~~~~~~G~~~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~-~s~~~illaDssKfg~~  213 (251)
T PRK13509        148 SQSITLSPQGSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLS-VVGKLVVLVDSSKIGER  213 (251)
T ss_pred             CcceeECHHHHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHH-HhCcEEEEEcccccCce
Confidence                         468999999999999976656677788999999885 68999999999999643

>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional

Probab=99.90  E-value=9.9e-24  Score=191.43  Aligned_cols=121  Identities=19%  Similarity=0.277  Sum_probs=104.0

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC-----
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD-----  102 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~-----  102 (260)
                      .+.++|++||++|+++|+|||+||||+|||+++++++|+++      .++||||||+.++..+.. .+++++.++     
T Consensus        88 ~~~~~K~~IA~~Aa~~I~dgd~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~  161 (269)
T PRK09802         88 LNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKH------TDVIAMTNGMNVANALLEAEGVELLMTGGHLRR  161 (269)
T ss_pred             hCHHHHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcCcC------CCeEEEeCCHHHHHHHHhCCCCEEEEECCEEec
Confidence            45578999999999999999999999999999999999754      269999999999988864 567776553     


Q ss_pred             --------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 --------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 --------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                                    +.+++|+||+||+|++.+++ +..+..++.+|++|+. +|++.|+|+|||||+..
T Consensus       162 ~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~-~s~~~ill~D~sKf~~~  229 (269)
T PRK09802        162 QSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCE-VAERIIVVTDSSKFNRS  229 (269)
T ss_pred             CCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHH-HcCcEEEEEeccccCCc
Confidence                          46899999999999998755 4677889999999885 58999999999999643

>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional

Probab=99.90  E-value=2e-23  Score=188.08  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=100.8

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CC-CcEEEcC----
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LG-IPLSDLD----  102 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~g-i~v~~l~----  102 (260)
                      ...++|++||++|+++|++||+||||+|||+++++++|++.      .++||||||+.++..+.. .+ +.++.++    
T Consensus        73 ~~~~~K~~IA~~Aa~~I~~g~tIfld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~  146 (256)
T PRK10434         73 INTHKKELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRF------NNITVMTNSLHIVNALSELDNEQTILMPGGTFR  146 (256)
T ss_pred             hhHHHHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhccC------CCeEEEECCHHHHHHHhhCCCCCEEEEECCEEe
Confidence            35578999999999999999999999999999999999864      269999999999998865 33 5666543    


Q ss_pred             ---------------CCccccEEEEccCcccCCCCcc-cCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 ---------------SYPVVDLAIDGADEVDPFMNLV-KGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 ---------------~~~~~D~af~GadgId~~~~~i-~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                                     +.+++|+||+||+|++.++++. .+. ++.+|++|+. +|+++|+|+||+||+..
T Consensus       147 ~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~-~~~~k~~~~~-~a~~~illaD~sKf~~~  214 (256)
T PRK10434        147 KKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNE-VYTVSKAMCN-AAREIILMADSSKFGRK  214 (256)
T ss_pred             CCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCH-HHHHHHHHHH-HcCcEEEEECCcccCCc
Confidence                           4689999999999999886554 444 5889987775 69999999999999643

>PRK10411 DNA-binding transcriptional activator FucR; Provisional

Probab=99.90  E-value=2.5e-23  Score=185.94  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHH-hCCCcEEEcC-----
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV-SLGIPLSDLD-----  102 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~-~~gi~v~~l~-----  102 (260)
                      .+.++|++||++|+++|+|||+||||+|||+.+++++|+++       ++||||||+.++..+. ..+++++.++     
T Consensus        75 ~~~~~K~~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~~-------~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~  147 (240)
T PRK10411         75 SHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDI-------NIQVFTNSHPICQELGKRERIQLISSGGTLER  147 (240)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCCC-------CeEEEeCCHHHHHHHhcCCCCEEEEECCEEeC
Confidence            45678999999999999999999999999999999999753       6999999999998885 4567766543     


Q ss_pred             --------------CCccccEEEEccCcccCCCC-cccCcchhHHHHHHHHHhcCcEEEEEeCCCccc
Q 024953          103 --------------SYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVEGACKKFVVIVDESKLVP  155 (260)
Q Consensus       103 --------------~~~~~D~af~GadgId~~~~-~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~  155 (260)
                                    +.+++|++|+||+|++.+++ +.....++.+|+.|+. +|+++|+++|||||+.
T Consensus       148 ~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~-~a~~~ill~D~sKf~~  214 (240)
T PRK10411        148 KYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLK-RAAQSLLLIDKSKFNR  214 (240)
T ss_pred             CCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHH-HhCcEEEEEeccccCC
Confidence                          46899999999999998754 4577889999988885 6899999999999954

>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]

Probab=99.90  E-value=3.6e-23  Score=186.20  Aligned_cols=122  Identities=21%  Similarity=0.190  Sum_probs=103.5

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHh-CCCcEEEcC----
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVS-LGIPLSDLD----  102 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~-~gi~v~~l~----  102 (260)
                      ..+.++|++||++|+++|+|||+||||+|||++++|++|++.      +++|+||||+.++..|.. .+..++.++    
T Consensus        72 ~~~~~eK~~IA~~Aa~lI~~g~~ifld~GTT~~~la~~L~~~------~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~  145 (253)
T COG1349          72 ALNTEEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPDD------NNLTVITNSLNIAAALLEKPNIEVILLGGTVR  145 (253)
T ss_pred             HhhHHHHHHHHHHHHhhCCCCCEEEECCCcHHHHHHHHhCcC------CCeEEEeCCHHHHHHHHhCCCCeEEEeCcEEE
Confidence            345678999999999999999999999999999999999865      259999999999887754 456665442    


Q ss_pred             ---------------CCccccEEEEccCcccCCC-CcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 ---------------SYPVVDLAIDGADEVDPFM-NLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 ---------------~~~~~D~af~GadgId~~~-~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                                     +.+++|++|+|++|+|.++ .+..+..++.+|++|+. +|+++|+|+|||||+++
T Consensus       146 ~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~-~a~~~~ll~D~sKf~~~  214 (253)
T COG1349         146 KKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIE-AAREVILLADSSKFGRV  214 (253)
T ss_pred             cCCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHH-hhCcEEEEEcCCccCCc
Confidence                           4689999999999999875 45677889999988875 68999999999999644

>PRK08335 translation initiation factor IF-2B subunit alpha; Validated

Probab=98.29  E-value=1.5e-05  Score=73.00  Aligned_cols=130  Identities=20%  Similarity=0.175  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEE--CCc-----HHHHHHHHhCCCcEEEcCC
Q 024953           32 ELKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGI--PTS-----KKTHEQAVSLGIPLSDLDS  103 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvV--TnS-----l~~a~~l~~~gi~v~~l~~  103 (260)
                      +.+++|++.++++|++|++|.- +.++|+..+++...+.   +  ++++|+  -+-     ...+.+|.+.|+++..+-.
T Consensus        94 ~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D  168 (275)
T PRK08335         94 EAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRK---G--KRFKVILTESAPDYEGLALANELEFLGIEFEVITD  168 (275)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---C--CceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
Confidence            4578899999999999998774 5577888888777643   1  134433  222     2457778888998876532


Q ss_pred             C------ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953          104 Y------PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV  169 (260)
Q Consensus       104 ~------~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~  169 (260)
                      .      .++|++++|||.|..+|....--|...+- .+..+....+|+++.++||...+..  ..+|+|-.
T Consensus       169 sa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA-~~Ak~~~vPfyV~a~~~k~~~~~~~--~~i~ieer  237 (275)
T PRK08335        169 AQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLA-LACHDNGVPFYVAAETFKFHPELKS--EEVELVER  237 (275)
T ss_pred             cHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEECccceecccCCC--CCcccccc
Confidence            1      26999999999999999876555544442 2223456789999999999776543  26666544

>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=9e-06  Score=75.05  Aligned_cols=121  Identities=21%  Similarity=0.191  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcH------HHHHHHHhCCCcEEEc
Q 024953           30 QDELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSK------KTHEQAVSLGIPLSDL  101 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl------~~a~~l~~~gi~v~~l  101 (260)
                      .+..|+.||+.++++|+||++|. .+.++|+..+++.-.++.     ++++| ||-|-      .++..|++.|++++.+
T Consensus       102 ~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~-----k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I  176 (301)
T COG1184         102 VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRG-----KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVI  176 (301)
T ss_pred             HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcC-----CceEEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence            44678899999999999999988 699999999988877652     13444 55443      4678889999988765


Q ss_pred             CC------CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          102 DS------YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       102 ~~------~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                      -.      ..++|++|+|+|+|..+|.++.--|...+-.. ..+...-+++++.+-||+++
T Consensus       177 ~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~-A~e~~~Pf~v~aesyKf~p~  236 (301)
T COG1184         177 VDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALA-ARELRVPFYVVAESYKFVPK  236 (301)
T ss_pred             echHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHH-HHHhCCCEEEEeeeeccccc
Confidence            31      12699999999999999988766666555422 23456789999999999875

>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins

Probab=98.25  E-value=2e-05  Score=73.04  Aligned_cols=131  Identities=15%  Similarity=0.077  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECC-C--------hhHHHHHHHHHhHHhcCCCCCEEE-ECCc-------HHHHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLGT-G--------STAKHAVDRIGELLRQGKLTNIVG-IPTS-------KKTHEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~Lgs-G--------ST~~~la~~L~~~~~~~~l~~itv-VTnS-------l~~a~~l~~~g   95 (260)
                      ..++||+.|+++|++|++|.--+ +        +|+..+++...+..     ++++| |+-|       ..++..|.+.|
T Consensus       104 ~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g-----~~~~V~v~EsrP~~~G~~~~a~~L~~~g  178 (303)
T TIGR00524       104 TNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDG-----KRIRVIACETRPRNQGSRLTAWELMQDG  178 (303)
T ss_pred             HHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcC-----CceEEEECCCCCccchHHHHHHHHHHCC
Confidence            45779999999999999887544 3        58888887775431     13333 3321       34677888899


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+.        +..++|++|+|||.|-.+|.+..--|...+- .+..+....+|+++.+.||..+... +..+|+|
T Consensus       179 I~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA-~~Ak~~~vPv~V~a~s~K~~~~~~~-g~~i~~e  256 (303)
T TIGR00524       179 IDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLA-VLAKEFRIPFFVAAPLSTFDTKTSC-GEDIVIE  256 (303)
T ss_pred             CCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHH-HHHHHhCCCEEEecccccccCCCCC-ccccccc
Confidence            9887652        2236999999999999999877555554443 2223456789999999999765321 2467776


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      -.+
T Consensus       257 ~~~  259 (303)
T TIGR00524       257 ERD  259 (303)
T ss_pred             cCC
Confidence            543

This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.

>PRK08535 translation initiation factor IF-2B subunit delta; Provisional

Probab=98.24  E-value=1.5e-05  Score=74.04  Aligned_cols=131  Identities=18%  Similarity=0.156  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCc------HHHHHHHHhCCCcEEEcCC
Q 024953           32 ELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTS------KKTHEQAVSLGIPLSDLDS  103 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itv-VTnS------l~~a~~l~~~gi~v~~l~~  103 (260)
                      ...++|++.|+++|++|++|. .+.++|+..+++...+..     ++++| |+-|      ..++..|.+.|+++..+..
T Consensus       105 ~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~-----k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D  179 (310)
T PRK08535        105 NAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQG-----KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD  179 (310)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCC-----CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence            356779999999999999887 566789988887775431     13333 3322      2467788889998875531


Q ss_pred             ------CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953          104 ------YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV  169 (260)
Q Consensus       104 ------~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~  169 (260)
                            -.++|++|+|||.|-.+|....--|...+- .+..+...-+|+++.+.||..+.-. +..+|+|-.
T Consensus       180 sav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A-~~Ak~~~vPv~V~a~~~K~~~~~~~-~~~~~ie~~  249 (310)
T PRK08535        180 SAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIA-LAAHEARVPFMVAAETYKFSPKTLL-GELVEIEER  249 (310)
T ss_pred             hHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHH-HHHHHhCCCEEEecccceecCCCCC-CCcceeccc
Confidence                  126999999999999999877555544442 2234557889999999999765321 134566544

>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family

Probab=98.24  E-value=1.6e-05  Score=73.62  Aligned_cols=135  Identities=19%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCc-----HHHHHHHHhCCCcEEEcCC-
Q 024953           31 DELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS-----KKTHEQAVSLGIPLSDLDS-  103 (260)
Q Consensus        31 ~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnS-----l~~a~~l~~~gi~v~~l~~-  103 (260)
                      ....++|++.|+++|++|++|. .+.++|+..+++...+..+  .+ .+.+.-+.     ..++..|.+.|+++..+.. 
T Consensus        99 ~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~--~f-~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds  175 (301)
T TIGR00511        99 DKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGK--DI-EVIATETRPRKQGHITAKELRDYGIPVTLIVDS  175 (301)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCC--cE-EEEEecCCCcchHHHHHHHHHHCCCCEEEEehh
Confidence            3457789999999999999887 5667898888877754311  11 23332222     2467888889998875521 


Q ss_pred             -----CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEec
Q 024953          104 -----YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP  170 (260)
Q Consensus       104 -----~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p  170 (260)
                           ..++|++|+|||.|-.+|....--|...+- .+..+....+|++|++.||..+.-. +..+++|-.+
T Consensus       176 a~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA-~~Ak~~~vPv~V~a~~~K~~~~~~~-~~~~~ie~~~  245 (301)
T TIGR00511       176 AVRYFMKEVDHVVVGADAITANGALINKIGTSQLA-LAAREARVPFMVAAETYKFHPKTIT-GELVEIEERD  245 (301)
T ss_pred             HHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHH-HHHHHhCCCEEEEcccceecCCCCC-CCcccccccC
Confidence                 126999999999999999877555544443 2223557899999999999765321 1345555543

The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.

>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase

Probab=98.10  E-value=6.6e-05  Score=70.45  Aligned_cols=132  Identities=21%  Similarity=0.197  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHhcCcCCC----EEEEC--CC-------hhHHHHHHHHHhHHhcCCCCCEEEE-CCcH-------HHHHH
Q 024953           32 ELKKIAAYKAVEFVESGM----VLGLG--TG-------STAKHAVDRIGELLRQGKLTNIVGI-PTSK-------KTHEQ   90 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~----~I~Lg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-TnSl-------~~a~~   90 (260)
                      +..++|++.++++|++|+    +|.--  +|       +|+..+++...++   +  ++++|+ +-|-       .++.+
T Consensus       127 ~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~---g--~~~~V~v~EsrP~~qG~rlta~~  201 (331)
T TIGR00512       127 EDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK---G--RLEHVYADETRPRLQGARLTAWE  201 (331)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc---C--CceEEEECCCCchhhHHHHHHHH
Confidence            346679999999999999    87763  33       3788787777543   1  134443 3221       24667


Q ss_pred             HHhCCCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCc
Q 024953           91 AVSLGIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGL  162 (260)
Q Consensus        91 l~~~gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~  162 (260)
                      |.+.|+++..+.        +..++|++++|||.|..+|.+..--|...+- .+..+....+|+++.++||..+.-. ..
T Consensus       202 L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA-~~Ak~~~vPfyV~a~~~kfd~~~~~-~~  279 (331)
T TIGR00512       202 LVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLA-VLAKHHGVPFYVAAPTSTIDLETKD-GA  279 (331)
T ss_pred             HHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEeccccccccCCCC-cc
Confidence            888999887553        2236999999999999999876555544442 2224556789999999999755322 24


Q ss_pred             cccEEEec
Q 024953          163 AMPVEVVP  170 (260)
Q Consensus       163 ~lPvEV~p  170 (260)
                      .+|+|-.+
T Consensus       280 ~i~iE~r~  287 (331)
T TIGR00512       280 EIPIEERP  287 (331)
T ss_pred             ccccccCC
Confidence            57777654

The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.

>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed

Probab=97.98  E-value=0.00014  Score=68.57  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhcCcCCCEEEEC--CCh-------hHHHHHHHHHhHHhcCCCCCEEEE-CCc-H------HHHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLG--TGS-------TAKHAVDRIGELLRQGKLTNIVGI-PTS-K------KTHEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~Lg--sGS-------T~~~la~~L~~~~~~~~l~~itvV-TnS-l------~~a~~l~~~g   95 (260)
                      ..++|++.++++|++|++|.--  +|+       |++.+++...++   +  ++++|+ +-| .      .++.+|.+.|
T Consensus       132 ~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~---g--k~~~V~v~EsRP~~qG~~lta~eL~~~G  206 (344)
T PRK05720        132 INRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEK---G--IDIHVYADETRPRLQGARLTAWELYQAG  206 (344)
T ss_pred             HHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHc---C--CceEEEEcCCCChhhhHHHHHHHHHHCC
Confidence            3457899999999999988753  443       566677766543   1  134443 322 1      2467788899


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+-        +...+|++|+|||.|-.+|....--|...+- .+..+....+|+++.++||..+... +..+|+|
T Consensus       207 I~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lA-l~Ak~~~vPfyV~a~~~kfd~~~~~-g~~i~iE  284 (344)
T PRK05720        207 IDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLA-IAAKYHGVPFYVAAPSSTIDLTLAD-GKEIPIE  284 (344)
T ss_pred             CCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEeccccccCcCCCC-Ccccccc
Confidence            9887653        2235999999999999999876555544442 2224557789999999999765322 2457776


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      -.+
T Consensus       285 ~r~  287 (344)
T PRK05720        285 ERD  287 (344)
T ss_pred             cCC
Confidence            654

>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

Probab=97.90  E-value=5e-05  Score=67.25  Aligned_cols=110  Identities=23%  Similarity=0.302  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH--------------HHHHHhCCCc
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT--------------HEQAVSLGIP   97 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~--------------a~~l~~~gi~   97 (260)
                      ..|..+|++|++.++||+.|.||.| --...|.++++.        +.+.+.|.+.              .....-.+.+
T Consensus         6 ~~~e~ia~r~A~el~dG~~VnlGIG-lPtlvan~~~~~--------~~~~~~seng~Lg~g~~p~~~~~d~~linaG~~~   76 (225)
T COG2057           6 TEREMIAKRAARELKDGDYVNLGIG-LPTLVANYAPEG--------MNVLLQSENGLLGVGPAPLPGEEDADLINAGKQP   76 (225)
T ss_pred             hhHHHHHHHHHHhccCCCEEEecCC-chHHhHhhcccc--------cceEEecCceeEEecCCCCCCCCCcchhhCCCce
Confidence            5689999999999999999999999 666777888742        2222222211              1112222223


Q ss_pred             EEEc--------------CCCccccEEEEccCcccCCCC---------cccCcchhHHHHHHHHHhcCcEEEEEeCCCcc
Q 024953           98 LSDL--------------DSYPVVDLAIDGADEVDPFMN---------LVKGRGGSLLREKMVEGACKKFVVIVDESKLV  154 (260)
Q Consensus        98 v~~l--------------~~~~~~D~af~GadgId~~~~---------~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~  154 (260)
                      +..+              -+.-|+|++|+|+-+||..++         ..+|.++|+-    +...|+++|++.+|+|-.
T Consensus        77 vt~~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmd----l~~gakkvii~m~H~~k~  152 (225)
T COG2057          77 VTALPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMD----LVTGAKKVIVVMEHTKKS  152 (225)
T ss_pred             eEecCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchh----hhcCCcEEEEEeeeeccc
Confidence            3221              134599999999999998764         3466666654    245789999999999873

>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit

Probab=97.86  E-value=0.00011  Score=66.77  Aligned_cols=123  Identities=20%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH-----HHHHHHHhCCCcEEEcCC
Q 024953           30 QDELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK-----KTHEQAVSLGIPLSDLDS  103 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl-----~~a~~l~~~gi~v~~l~~  103 (260)
                      .....++|++.+.++|++|++|. .|-++|+..+.....+..+  .+ .+.|+-+..     ..+..|.+.|+++..+..
T Consensus        90 ~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~--~~-~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d  166 (282)
T PF01008_consen   90 IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGK--KF-RVIVLESRPYNEGRLMAKELAEAGIPVTLIPD  166 (282)
T ss_dssp             HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTE--EE-EEEEE--TTTTHHHTHHHHHHHTT-EEEEE-G
T ss_pred             HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCC--eE-EEEEccCCcchhhhhHHHHhhhcceeEEEEec
Confidence            34557789999999999999887 6999999988887544211  01 233332221     467778888998775531


Q ss_pred             ------Ccc-ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          104 ------YPV-VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       104 ------~~~-~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                            ..+ +|++++|||.|-.+|..+.--|...+- -...+....+|+++++.||..+
T Consensus       167 ~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a-~~Ak~~~vPv~v~~~~~K~~~~  225 (282)
T PF01008_consen  167 SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLA-LAAKEFNVPVYVLAESYKFSPR  225 (282)
T ss_dssp             GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHH-HHHHHTT-EEEEE--GGGBETT
T ss_pred             hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHH-HHHHhhCCCEEEEccccccccc
Confidence                  125 999999999999999876544443332 1223456789999999999765

The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....

>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00015  Score=65.63  Aligned_cols=135  Identities=18%  Similarity=0.207  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECCChhH-HHHHHHHHhHHhcCCCCCEEE-ECC------cHHHHHHHHhCCCcEEEcCC-
Q 024953           33 LKKIAAYKAVEFVESGMVLGLGTGSTA-KHAVDRIGELLRQGKLTNIVG-IPT------SKKTHEQAVSLGIPLSDLDS-  103 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~LgsGST~-~~la~~L~~~~~~~~l~~itv-VTn------Sl~~a~~l~~~gi~v~~l~~-  103 (260)
                      .++.||+.+-.+|.||++|..-+=|-+ +.+...-++..     +...| ||-      ....+.+|.+.|+++..+-. 
T Consensus       116 sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~-----~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDS  190 (313)
T KOG1466|consen  116 SRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNK-----KRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDS  190 (313)
T ss_pred             HHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcC-----ceEEEEEecCCCCCchhHHHHHHHhcCCCeEEEehh
Confidence            467799999999999999998665544 33333323221     24555 442      33567788999999876421 


Q ss_pred             -----CccccEEEEccCcccCCCCcccCcchhHHHHHHHH-HhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHH
Q 024953          104 -----YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVE-GACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWK  174 (260)
Q Consensus       104 -----~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~-~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~  174 (260)
                           ..++|..|.||+||-++|+.|.-.|...+  .+++ ++-+-+|++|.+-||+.-+-.+...+|-+-.|+.+.
T Consensus       191 aVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~--~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~~f~  265 (313)
T KOG1466|consen  191 AVGYVMERVDLVLVGAEGVVESGGIINKIGTYQV--AVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPFKFS  265 (313)
T ss_pred             hHHHHHhhccEEEEccceeeecCceeeecccchh--hhhHHhcCCCeEEEeeccceeeeccCcccccccccCCcccC
Confidence                 23799999999999998888765554333  2222 334679999999999754322234667666665543

>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional

Probab=97.81  E-value=0.00036  Score=66.27  Aligned_cols=130  Identities=15%  Similarity=0.088  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEEC--CC--------hhHHHHHHHHHhHHhcCCCCCEEEECCc-H-------HHHHHHHh
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLG--TG--------STAKHAVDRIGELLRQGKLTNIVGIPTS-K-------KTHEQAVS   93 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~Lg--sG--------ST~~~la~~L~~~~~~~~l~~itvVTnS-l-------~~a~~l~~   93 (260)
                      +..++|++.++++|++|++|.--  +|        .|+..+++...+.   +  ++++|+... -       .++.+|.+
T Consensus       151 ~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~---g--k~f~V~v~EsRP~~qG~rlta~eL~~  225 (363)
T PRK05772        151 DAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKAL---G--MSVSVIAPETRPWLQGSRLTVYELME  225 (363)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHC---C--CeEEEEECCCCccchhHHHHHHHHHH
Confidence            34677999999999999987753  33        2566666665543   1  245554322 1       24667888


Q ss_pred             CCCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCcccc
Q 024953           94 LGIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMP  165 (260)
Q Consensus        94 ~gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lP  165 (260)
                      .|+++..+-        ....+|++|+|||.|-.+|....--|...+- .+..+....+|++|.++||..+...  -.+|
T Consensus       226 ~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA-~~Ak~~~vPfyV~ap~~k~d~~~~~--~~i~  302 (363)
T PRK05772        226 EGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEA-VIAHELGIPFYALAPTSTFDLKSDV--NDVK  302 (363)
T ss_pred             CCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHH-HHHHHhCCCEEEEccccccCccccc--cccc
Confidence            999887542        2235999999999999999876555544442 2223456789999999999765432  3566


Q ss_pred             EEEe
Q 024953          166 VEVV  169 (260)
Q Consensus       166 vEV~  169 (260)
                      +|-.
T Consensus       303 ieer  306 (363)
T PRK05772        303 IEER  306 (363)
T ss_pred             cccC
Confidence            6554

>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional

Probab=97.64  E-value=0.0011  Score=62.23  Aligned_cols=128  Identities=20%  Similarity=0.163  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcCcCCCEEEEC--CCh-------hHHHHHHHHHhHHhcCCCCCEEEECCc--H-----H-HHHHHHhCCCc
Q 024953           35 KIAAYKAVEFVESGMVLGLG--TGS-------TAKHAVDRIGELLRQGKLTNIVGIPTS--K-----K-THEQAVSLGIP   97 (260)
Q Consensus        35 ~~IA~~Aa~lI~dg~~I~Lg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTnS--l-----~-~a~~l~~~gi~   97 (260)
                      ++|++.|+++|++|++|.--  +|+       |++.+++...+.   +  ++++|+...  .     + ++.+|.+.|++
T Consensus       124 ~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~---g--k~f~V~v~EsRP~~qG~rlta~eL~~~GI~  198 (329)
T PRK06371        124 KKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRN---G--KNIFVFVDETRPRLQGARLTAWELAQEGID  198 (329)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHc---C--CeeEEEECCCCCcchHHHHHHHHHHHCCCC
Confidence            56899999999999988763  344       456777766543   1  134444332  1     2 46778888999


Q ss_pred             EEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953           98 LSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV  169 (260)
Q Consensus        98 v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~  169 (260)
                      +..+-        +...+|++|+|||.|-.+|.+..--|...+- .+..+....+|++|.+++|...... +-.+|+|-.
T Consensus       199 vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lA-l~Ak~~~VPfyV~a~~~t~d~~~~~-g~~i~iEer  276 (329)
T PRK06371        199 HAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKA-VLAKVNGIPFYVAAPGSTFDFSIKS-GDEIPIEER  276 (329)
T ss_pred             EEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEeccccccCCCCCC-cCccccccC
Confidence            87542        2235999999999999999877555544442 2223456788999998888533221 124666543

>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional

Probab=97.54  E-value=0.0019  Score=60.91  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcCcCCCEEEEC--CCh-------hHHHHHHHHHhHHhcCCCCCEEEECC-cH------H-HHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLG--TGS-------TAKHAVDRIGELLRQGKLTNIVGIPT-SK------K-THEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~Lg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTn-Sl------~-~a~~l~~~g   95 (260)
                      ..++|++.++++|++|++|.--  +|+       |++.+++...+.   +  ++++|+.. |-      + ++.+|.+.|
T Consensus       133 ~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~G  207 (339)
T PRK06036        133 RNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQ---G--KEIKVIACETRPLNQGSRLTTWELMQDN  207 (339)
T ss_pred             HHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHc---C--CceEEEEcCCCchhhHHHHHHHHHHHcC
Confidence            3567889999999999988864  343       677777776543   1  14544433 21      2 466788899


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+-        +...+|++|.|||.|-.+| ...--|...+- .+..+....+|++|..+||...... + .+|+|
T Consensus       208 I~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v~NKiGT~~lA-~~Ak~~~vPfyV~ap~s~~d~~~~~-g-~i~iE  283 (339)
T PRK06036        208 IPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-VFNKIGTYTHS-VLAKEHEIPFYVAAPLSTFDFEGWE-G-SVKIE  283 (339)
T ss_pred             CCEEEEehhHHHHHhccCCCCEEEECccchhhcC-eehhhhHHHHH-HHHHHhCCCEEEEeecCccCCCcCC-C-Ccccc
Confidence            9887542        2234999999999998885 43323333331 2223556789999999999544321 2 46665


Q ss_pred             Ee
Q 024953          168 VV  169 (260)
Q Consensus       168 V~  169 (260)
                      -.
T Consensus       284 ~r  285 (339)
T PRK06036        284 ER  285 (339)
T ss_pred             cC
Confidence            53

>PRK08334 translation initiation factor IF-2B subunit beta; Validated

Probab=97.31  E-value=0.0042  Score=58.91  Aligned_cols=130  Identities=18%  Similarity=0.134  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECC---------ChhHHHHHHHHHhHHhcCCCCCEEE-ECCcH------HH-HHHHHhC
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGT---------GSTAKHAVDRIGELLRQGKLTNIVG-IPTSK------KT-HEQAVSL   94 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~Lgs---------GST~~~la~~L~~~~~~~~l~~itv-VTnSl------~~-a~~l~~~   94 (260)
                      +..++|++.++++|++|+ |.--+         ..|++.+++...+.   +  +.+.| ++=|-      +. +.+|.+.
T Consensus       145 ~~~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~  218 (356)
T PRK08334        145 EANLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKD---G--TLKLLWVDETRPVLQGARLSAWEYHYD  218 (356)
T ss_pred             HHHHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHc---C--CeEEEEECCCCchhhHHHHHHHHHHHC
Confidence            346789999999999999 54333         24678888877643   2  13443 44221      23 5678888


Q ss_pred             CCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccE
Q 024953           95 GIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV  166 (260)
Q Consensus        95 gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPv  166 (260)
                      |+++..+-        +..++|++|.|||.|-.+|....--|...+- .+..+...-+|++|..+||...... +..+|+
T Consensus       219 GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA-~~Ak~~~vPfyV~Ap~~t~d~~~~~-~~~i~i  296 (356)
T PRK08334        219 GIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLA-VLAKEHGIPFFTVAPLSTIDMSLKS-GKEIPI  296 (356)
T ss_pred             CCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEEcccCccCCCCCC-Cccccc
Confidence            99887542        2236999999999999999876555544432 2223456789999999999644432 235677


Q ss_pred             EEe
Q 024953          167 EVV  169 (260)
Q Consensus       167 EV~  169 (260)
                      |-.
T Consensus       297 E~r  299 (356)
T PRK08334        297 EER  299 (356)
T ss_pred             ccC
Confidence            654

>PRK06372 translation initiation factor IF-2B subunit delta; Provisional

Probab=97.22  E-value=0.0037  Score=56.67  Aligned_cols=116  Identities=19%  Similarity=0.142  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCc-----HHHHHHHHhCCCcEEEcCC---
Q 024953           33 LKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS-----KKTHEQAVSLGIPLSDLDS---  103 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnS-----l~~a~~l~~~gi~v~~l~~---  103 (260)
                      .-+.|++.|+++| +|++|. +|+++|+..+...-. +     ...+.++-+-     ..++..|.+.|+++..+..   
T Consensus        73 ~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~~-~-----~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~  145 (253)
T PRK06372         73 HEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSSE-K-----IKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASM  145 (253)
T ss_pred             HHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhcC-C-----CCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHH
Confidence            3456888899999 556665 687888877764321 1     0134333322     2467778888998775421   


Q ss_pred             ---CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          104 ---YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       104 ---~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                         ..++|++|+|||.|-.+|....--|...+- .+..+...-+|+++.+-||.++
T Consensus       146 ~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~A-l~A~~~~vPv~V~~~s~Kf~~~  200 (253)
T PRK06372        146 CEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLA-LCARYLKKPFYSLTISMKIERN  200 (253)
T ss_pred             HHHHHhCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEEeeccccCCC
Confidence               126999999999999999877555554443 2234557789999999999654

>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit

Probab=97.01  E-value=0.0029  Score=55.60  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH------H-----HHHHhC--------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT------H-----EQAVSL--------   94 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~------a-----~~l~~~--------   94 (260)
                      ++.||+.|+++|+||++|.+|.| .-..++.+|.+.      +++++.+-+=-.      .     ..+.+.        
T Consensus         3 ~~~Ia~~aA~~i~dg~~v~lGiG-iP~~va~~l~~~------~~l~l~~E~G~~g~~p~p~~~~~~~~l~~~g~~~~~~~   75 (207)
T TIGR02428         3 RDQIAARAAQELKDGDYVNLGIG-IPTLVANYLPEG------IEVFLQSENGILGMGPAPEPGEEDPDLINAGKQPVTLL   75 (207)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeec-HHHHHHHHHhcC------CeEEEEEeCceecCccCCCCCCcCHHHHhCCCCceeec
Confidence            68899999999999999999999 667777777652      256665543111      0     022222        


Q ss_pred             -CCcEE------EcCCCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhcCcEEEEEeCCC
Q 024953           95 -GIPLS------DLDSYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGACKKFVVIVDESK  152 (260)
Q Consensus        95 -gi~v~------~l~~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A~~~IlLaD~sK  152 (260)
                       +..+.      .+....++|++|+|+-+||..|+.         ..|.|++.-    +.+.|++.|+...|++
T Consensus        76 ~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d----~~~~a~~~i~~~~~t~  145 (207)
T TIGR02428        76 PGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLANWMIPGKLVPGMGGAMD----LVAGAKRVIVAMEHTT  145 (207)
T ss_pred             cCcEEecChhheeeEcCCceeEEEechHHhCCCCcccccccCCccccccCchhh----hhcCCCEEEEEEeeEC
Confidence             11111      122345899999999999986542         233333222    2345788877776644

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.

>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional

Probab=96.60  E-value=0.01  Score=52.69  Aligned_cols=47  Identities=23%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCCh---hHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQGKLTNIVGIPTS   84 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGS---T~~~la~~L~~~~~~~~l~~itvVTnS   84 (260)
                      |..=+++|+++|+|||+|.+|.-.   +-..++++|.++   ++ +++|++.|+
T Consensus         4 K~~s~~eAv~~I~DG~ti~~gGf~~~~~P~ali~al~r~---~~-~dLtli~~~   53 (219)
T PRK09920          4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES---GV-RDLTLIAND   53 (219)
T ss_pred             ccCcHHHHHhcCCCCCEEEECcccCcCCHHHHHHHHHhc---CC-CceEEEEeC
Confidence            444567888999999999987643   677888888654   22 489999754

>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit

Probab=96.38  E-value=0.026  Score=50.19  Aligned_cols=51  Identities=20%  Similarity=0.170  Sum_probs=34.1

Q ss_pred             CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 ~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                      ..+++|+||+=+...|..||+...++....- ..++.+|+++|+-++  ++++.
T Consensus       148 ~a~~~DvAlIha~~AD~~GN~~~~~~~~~~~-~~~A~AAk~vIv~vE--~IV~~  198 (222)
T TIGR02429       148 YPLPADFALIKAHKADRWGNLTYRKAARNFG-PIMAMAAKTTIAQVS--QVVEL  198 (222)
T ss_pred             cCCCCcEEEEEecccCCCCcEEEECccccCC-HHHHhhcCcEEEEEE--EEecC
Confidence            3468999999999999999986544323232 236677888655444  45543

Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.

>TIGR03458 YgfH_subfam succinate CoA transferases

Probab=96.03  E-value=0.084  Score=52.18  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=69.1

Q ss_pred             HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhc-----CCCCCEEEECCcHH-----------------------
Q 024953           38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQ-----GKLTNIVGIPTSKK-----------------------   86 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~-----~~l~~itvVTnSl~-----------------------   86 (260)
                      +++|+++|+|||+|++|..   .+-..|.++|.++.++     .+. ++++++....                       
T Consensus         5 aeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~-~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~s   83 (485)
T TIGR03458         5 ADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPF-KITLLTGASTGPELDGVLAEADAIARRLPYQSD   83 (485)
T ss_pred             HHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCc-cEEEEEecccCCcccccccccCCEEEEecccCC
Confidence            6789999999999999964   6788889999766421     111 5665552211                       


Q ss_pred             --HHHHHHhCCCcEEEc---------CCCc--cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953           87 --THEQAVSLGIPLSDL---------DSYP--VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES  151 (260)
Q Consensus        87 --~a~~l~~~gi~v~~l---------~~~~--~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s  151 (260)
                        ......+..+..+..         ....  ++|++++-+.-.|.+|++..+......+ .+ +++|+++|+-++..
T Consensus        84 p~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~-~a-a~aAk~VIvEVN~~  159 (485)
T TIGR03458        84 PTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNP-TF-LELADKVIVEVNTW  159 (485)
T ss_pred             HHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHH-HH-HHhCCEEEEEECCC
Confidence              011111111222211         1122  7999999999999999887765444333 33 35688887777654

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.

>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]

Probab=96.03  E-value=0.048  Score=48.35  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCcCCCEEEECC---ChhHHHHHHHHHhHHhcCCCCCEEEECCcH---H--HHHHHHhC-----------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGT---GSTAKHAVDRIGELLRQGKLTNIVGIPTSK---K--THEQAVSL-----------   94 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~Lgs---GST~~~la~~L~~~~~~~~l~~itvVTnSl---~--~a~~l~~~-----------   94 (260)
                      |..-+++|++.++|||+|.+|.   --+-..++.+|-+.    +.+++|+|+|+.   .  .-.++...           
T Consensus         4 k~~s~~ea~~~~~dG~ti~~gGFg~~g~P~alI~ali~~----GvkdLt~I~n~~g~~d~glg~li~~~~vkk~i~S~ig   79 (220)
T COG1788           4 KLSSAEEAVANVKDGDTIMIGGFGTCGIPEALIHALIRQ----GVKDLTVISNNAGFPDLGLGKLIGNGQVKKMIASYIG   79 (220)
T ss_pred             hhhhHHHHHhhCCCCCEEEEccccccCChHHHHHHHHHc----CCcceEEEecCCCCCcccHHHHhhcCcEEEEEEeccC
Confidence            6667888999999999999864   23566777887653    235899999983   2  11222111           


Q ss_pred             ---------------------------------CCc------------------------EEEcCCCccccEEEEccCcc
Q 024953           95 ---------------------------------GIP------------------------LSDLDSYPVVDLAIDGADEV  117 (260)
Q Consensus        95 ---------------------------------gi~------------------------v~~l~~~~~~D~af~GadgI  117 (260)
                                                       |++                        .+.+....+.|+||+-+.--
T Consensus        80 ~n~~~~r~~~~geleve~~pqgtLaerirAgg~Glp~~~t~tg~Gt~v~~gk~~~~~~G~~yvle~~lraDvAiI~a~ka  159 (220)
T COG1788          80 SNPEFGRQMLAGELEVELVPQGTLAERIRAGGAGLPGFPTRTGVGTLVAEGKVTRPFDGEPYVLEPALRADVALIHAHKA  159 (220)
T ss_pred             CCHHHHHHhhcceEEEEECCchHHHHHHHhhhcCCCcceeccccCceeecCcEEEeeCCeEEEEecccCcceEEEEeeec
Confidence                                             010                        00112456999999999999


Q ss_pred             cCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953          118 DPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus       118 d~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                      |..||+...+..-.+. ..++-+|+++|+-+++
T Consensus       160 D~~GNl~y~~t~~nfn-~~~A~AAk~~IvevEe  191 (220)
T COG1788         160 DSHGNLTYRGTARNFN-PLMAMAAKRTIVEVEE  191 (220)
T ss_pred             CCcCCEEEEcccccCC-HHHHhhcCeEEEEEEe
Confidence            9999987655444444 3445568887765543

>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC

Probab=95.80  E-value=0.0098  Score=53.72  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHhc----CcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           23 PPPVILTQDELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        23 ~~~~m~~~~~~K~~IA~~Aa~l----I~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      +|+.... ++.++.+++.|++|    +++|++|+++-|+|+.+++++|...    ..+++++|+
T Consensus        25 v~~~~~~-~~~~~~l~~~aA~~L~~~l~~~~~iGv~wG~Tl~~~~~~l~~~----~~~~~~vV~   83 (255)
T PF04198_consen   25 VPSPSDD-EDILESLGEAAAEYLSELLKDGDVIGVGWGRTLYAVANHLPPK----SLPNVTVVP   83 (255)
T ss_dssp             ESSSTTT-HHHHHHHHHHHHHHHHHH--TTEEEEE-TSHHHHHHHHTS--S----SSSCEEEEE
T ss_pred             ecCCCCh-HHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHHHHHHhcCcc----CCCCcEEEE
Confidence            3555555 66788899988874    5899999999999999999999863    124788876

One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....

>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]

Probab=95.66  E-value=0.087  Score=48.94  Aligned_cols=117  Identities=19%  Similarity=0.183  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEE-----ECCcH--HHHHHHHhCCCcEEEcC---
Q 024953           34 KKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVG-----IPTSK--KTHEQAVSLGIPLSDLD---  102 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itv-----VTnSl--~~a~~l~~~gi~v~~l~---  102 (260)
                      .+.||..|.++|.++++|. +|++.|+..|.+.-.++.+     ..+|     .+|.-  ..+..+.+.|++...+.   
T Consensus       149 ~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk~R-----kf~viVaE~~p~~qgH~~Ak~la~~giettVI~daa  223 (353)
T KOG1465|consen  149 RENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKKGR-----KFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAA  223 (353)
T ss_pred             hHhHHHHHHHHhccCceEEecCccHHHHHHHHHHHhccC-----ceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHH
Confidence            3569999999999999887 7999999999887765421     2332     33333  34555667888744332   


Q ss_pred             ---CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccC
Q 024953          103 ---SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPH  156 (260)
Q Consensus       103 ---~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~  156 (260)
                         ...++.+.++|+..+-.+|++....|.-.+-.. ..+.+--+|++|-.-|+..-
T Consensus       224 VfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vAla-Ak~h~vPv~VlAp~yKLsPl  279 (353)
T KOG1465|consen  224 VFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVALA-AKHHSVPVIVLAPMYKLSPL  279 (353)
T ss_pred             HHHHhhhcceEEEEeeeEecCCCeeccchHHHHHHH-HHhcCCcEEEecchhhcCCC
Confidence               123899999999999999987655555444322 23557789999999998653

>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]

Probab=95.48  E-value=0.027  Score=52.83  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=45.0

Q ss_pred             CCCCCCCCCCCCCChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           16 GLSPLSSPPPVILTQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        16 ~~~~~~~~~~~m~~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      ||.-.--+|+.-.+.+..++++|+.|+.    .|++||+|+++.|+|+..+++++....    .+++++|+
T Consensus        79 gL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~----~~~~~vV~  145 (321)
T COG2390          79 GLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP----LRDVKVVQ  145 (321)
T ss_pred             CCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEeccHHHHHHHHhcCcCc----cCCeEEEE
Confidence            4443334555555555556768888876    669999999999999999999997542    23677764

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]

Probab=95.21  E-value=0.13  Score=50.57  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHH-----HHHHHHhCCCcEEEc--CC---
Q 024953           35 KIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVSLGIPLSDL--DS---  103 (260)
Q Consensus        35 ~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~-----~a~~l~~~gi~v~~l--~~---  103 (260)
                      ++|-+.|.+-|+|||+|. .|+.+++..+..+-.+..  ..+ .+.||-.-..     ....|...|+++...  ..   
T Consensus       347 qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~--k~f-rVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~sy  423 (556)
T KOG1467|consen  347 QAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELG--KKF-RVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASY  423 (556)
T ss_pred             HHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhC--cce-EEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHH
Confidence            346677788999999877 699999988877743321  112 3555554332     344556678775422  10   


Q ss_pred             -CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhc-CcEEEEEeCCCcccCC
Q 024953          104 -YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC-KKFVVIVDESKLVPHL  157 (260)
Q Consensus       104 -~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A-~~~IlLaD~sKf~~~l  157 (260)
                       ...+++.|+||..+=.+|.+..--|.+.+  .|++++. =-+++.|.+-||.+|.
T Consensus       424 im~evtkvfLGahailsNG~vysR~GTa~v--alvAna~nVPVlVCCE~yKF~eRv  477 (556)
T KOG1467|consen  424 IMLEVTKVFLGAHAILSNGAVYSRVGTACV--ALVANAFNVPVLVCCEAYKFHERV  477 (556)
T ss_pred             HHHhcceeeechhhhhcCcchhhhcchHHH--HHHhcccCCCEEEEechhhhhhhh
Confidence             13689999999999888876655555555  4554322 2467888899998774

>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL)

Probab=94.83  E-value=0.094  Score=44.30  Aligned_cols=49  Identities=39%  Similarity=0.668  Sum_probs=32.7

Q ss_pred             HHHHHHhcC--cCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953           37 AAYKAVEFV--ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK   85 (260)
Q Consensus        37 IA~~Aa~lI--~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl   85 (260)
                      ++....+.+  +...+|+|.+|||...+.+.|.+....+..+++.++..+.
T Consensus         8 i~~~i~~~~~~~~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DE   58 (169)
T cd00458           8 IEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDE   58 (169)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECcc
Confidence            334444434  3456899999999999999997543222234678777766

RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=94.61  E-value=0.3  Score=48.21  Aligned_cols=104  Identities=19%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             cCcCCCEEEEC-----CChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHH-HH---hCCC------------------
Q 024953           44 FVESGMVLGLG-----TGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ-AV---SLGI------------------   96 (260)
Q Consensus        44 lI~dg~~I~Lg-----sGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~-l~---~~gi------------------   96 (260)
                      =++|||||-+-     .=-.+..+.+.+.+.    +++++|+.++|+.-++. +.   +.|.                  
T Consensus        39 gl~dgmtisfhhh~r~gd~v~n~v~~~~~~~----g~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~~~~~is  114 (492)
T TIGR01584        39 GLKDGMTISFHHHFREGDYVVNMVMRIIADM----GFKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGTLGDEIS  114 (492)
T ss_pred             CCcCCcEEEeeccccCccHHHHHHHHHHHHc----CcCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCchHHHHHh
Confidence            37999999863     334455555666643    45799999999854332 21   2221                  


Q ss_pred             ------cEEE---------c-CCCccccEEEEccCcccCCCCcc--c--CcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953           97 ------PLSD---------L-DSYPVVDLAIDGADEVDPFMNLV--K--GRGGSLLREKMVEGACKKFVVIVDES  151 (260)
Q Consensus        97 ------~v~~---------l-~~~~~~D~af~GadgId~~~~~i--~--~~~~a~~kekii~~~A~~~IlLaD~s  151 (260)
                            +++.         + ....++|+||+++.-.|..|++.  .  +.+...-.....+++|+++|+.+|.-
T Consensus       115 ~g~l~~p~~~~shggr~r~i~~g~l~iDVAfI~Vsp~D~~Gn~sg~~G~s~~gslgya~~dA~~A~kVIaevn~~  189 (492)
T TIGR01584       115 KGILKKPVIIRSHGGRARAIETGELHIDVAFLGVPCCDEMGNANGMTGKSPCGSLGYAIVDAQYADKVVAITDSL  189 (492)
T ss_pred             cCCCCCCeEEecCCcHHHHHhcCCCCCCEEEEeCCCcccCCCCcccCCCcccCccchhHHHHHhCCEEEEEECCC
Confidence                  1111         1 13468999999999999988765  1  23334444455667899998888763

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

Probab=93.89  E-value=0.69  Score=43.46  Aligned_cols=129  Identities=20%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhcCcCCCEEE--ECCCh-------hHHHHHHHHHhHHhcCCCCCEEEECCcH--------HHHHHHHhCCC
Q 024953           34 KKIAAYKAVEFVESGMVLG--LGTGS-------TAKHAVDRIGELLRQGKLTNIVGIPTSK--------KTHEQAVSLGI   96 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~--LgsGS-------T~~~la~~L~~~~~~~~l~~itvVTnSl--------~~a~~l~~~gi   96 (260)
                      -++|++.-++++++|+.|.  ..+|+       |++-.++.....   |  +++.++...-        -++-+|.+.|+
T Consensus       136 n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~---g--k~i~v~a~ETRP~lQGARLTawEL~~~GI  210 (346)
T COG0182         136 NRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEE---G--KDIRVFADETRPYLQGARLTAWELVQDGI  210 (346)
T ss_pred             HHHHHHHHHHhhccCCeEEeeecCCceeecCccchHHHHHHHHHC---C--CeeEEEeCCCccccccceeeHHHHhhcCC
Confidence            4568899999999999986  33343       355666666532   2  3688877544        46778888999


Q ss_pred             cEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHH-HhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           97 PLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVE-GACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        97 ~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~-~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      ++..+-        ++-.+|.++.|||-|-.+|....--|..  ..++++ +.--.|++.+..|-|...+.. +-.+|||
T Consensus       211 pvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY--~lAvlAk~~gIPFyVaAP~sTiD~~~~~-G~~I~IE  287 (346)
T COG0182         211 PVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTY--QLAVLAKHHGIPFYVAAPLSTIDFELKS-GEDIPIE  287 (346)
T ss_pred             ceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHH--HHHHHHHHcCCCeEEEcccCccccccCC-CCcccee
Confidence            887542        3346999999999999887543222221  123332 345678999999999655443 2468988


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      =.+
T Consensus       288 ER~  290 (346)
T COG0182         288 ERD  290 (346)
T ss_pred             ecC
Confidence            654

>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA

Probab=93.50  E-value=0.57  Score=40.55  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECC--C-hhHHHHHHHHHhHHhc-CC---CCCEEEECCc-H--H-HHH------------
Q 024953           33 LKKIAAYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLRQ-GK---LTNIVGIPTS-K--K-THE------------   89 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~Lgs--G-ST~~~la~~L~~~~~~-~~---l~~itvVTnS-l--~-~a~------------   89 (260)
                      .|..=|++|+++|++||.|+.|.  + ++...+.++|.++..+ ..   ...+++.+.. +  . ...            
T Consensus         7 ~Kl~sa~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~   86 (198)
T PF02550_consen    7 RKLVSAEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRH   86 (198)
T ss_dssp             HHBE-HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEE
T ss_pred             hhcCCHHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhccc
Confidence            34445899999999999999986  3 3455666777644321 00   0123332221 0  0 111            


Q ss_pred             ----------HHHhCC-CcEEE---------c-CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEE
Q 024953           90 ----------QAVSLG-IPLSD---------L-DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV  148 (260)
Q Consensus        90 ----------~l~~~g-i~v~~---------l-~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLa  148 (260)
                                .+.+.| ...+.         + .....+|++++.+...|.+|.+..|.+....+ .++ +.|+.+|+-+
T Consensus        87 ~s~f~~~~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~-~~i-e~A~~vI~eV  164 (198)
T PF02550_consen   87 NSFFVGPNERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTK-AAI-EQAKKVIVEV  164 (198)
T ss_dssp             EESS--HHHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHH-HHH-HHTSEEEEEE
T ss_pred             CcccCCHHHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHH-HHH-hcCCeEEEEc
Confidence                      111122 11111         1 12234899999999999999888775543333 444 5688888877


Q ss_pred             eC
Q 024953          149 DE  150 (260)
Q Consensus       149 D~  150 (260)
                      ..
T Consensus       165 N~  166 (198)
T PF02550_consen  165 NP  166 (198)
T ss_dssp             ET
T ss_pred             CC
Confidence            63

Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....

>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2

Probab=92.27  E-value=0.7  Score=44.89  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             cCcCCCEEEECC----C-hhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----HHHhCCC-----------------
Q 024953           44 FVESGMVLGLGT----G-STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----QAVSLGI-----------------   96 (260)
Q Consensus        44 lI~dg~~I~Lgs----G-ST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----~l~~~gi-----------------   96 (260)
                      =++|||||-+--    | -.+..+.+.+.+.    +++++|+.++|+.-.+     ..+..-+                 
T Consensus        16 glkDGMTISFHHH~RnGD~V~nmVm~~i~~m----GiKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~rG~lg~aiS   91 (466)
T PF04223_consen   16 GLKDGMTISFHHHLRNGDYVLNMVMDEIAEM----GIKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMRGPLGEAIS   91 (466)
T ss_dssp             T--TT-EEEE--TTGGGB-HHHHHHHHHHHT----T--SEEEEES---GGGGGHHHHHHTTSEEEEEESEEHHHHHHHHH
T ss_pred             CCcCCcEEEeehhccCccHHHHHHHHHHHHc----CCCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcCchHHHHHh
Confidence            369999998742    3 3444555666543    4569999999985432     2222211                 


Q ss_pred             ------cEEEc----------CCCccccEEEEccCcccCCCCcccC--------cchhHHHHHHHHHhcCcEEEEEeC
Q 024953           97 ------PLSDL----------DSYPVVDLAIDGADEVDPFMNLVKG--------RGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        97 ------~v~~l----------~~~~~~D~af~GadgId~~~~~i~~--------~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                            +++.-          ....++|+||+||...|.-|++.-.        .|.+..-    ++.|+++|++.|.
T Consensus        92 ~G~l~~Pvi~rSHGGR~raIe~Ge~~IDVAFi~AP~~D~~GN~nG~~G~saCGsLGYa~~D----A~yA~~VV~iTD~  165 (466)
T PF04223_consen   92 EGKLKKPVIIRSHGGRARAIESGELHIDVAFIAAPSCDEYGNANGVGGKSACGSLGYAMVD----AQYADKVVAITDN  165 (466)
T ss_dssp             CT--SS-EEE-BHHHHHHHHHCTSS--SEEEEEESEEETTS-EESSSSSS--S--CCHHHH----HHH-SEEEEEESS
T ss_pred             CCCCCCCEEEeCCCCchhheecCCcceEEEEEcCCccccccCcCCCcCCccccccccchhh----HHhcCcEEEEecC
Confidence                  11110          1356999999999999987764311        1234443    4678999999986

8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.

>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]

Probab=91.87  E-value=0.81  Score=45.15  Aligned_cols=121  Identities=16%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             CCChHHHHHHH--HHHHHhcCcCCCEEEEC--CChhHHHHHHHHHhHHhcC-----CCCCEEEEC-CcHH--HHHHHHhC
Q 024953           27 ILTQDELKKIA--AYKAVEFVESGMVLGLG--TGSTAKHAVDRIGELLRQG-----KLTNIVGIP-TSKK--THEQAVSL   94 (260)
Q Consensus        27 m~~~~~~K~~I--A~~Aa~lI~dg~~I~Lg--sGST~~~la~~L~~~~~~~-----~l~~itvVT-nSl~--~a~~l~~~   94 (260)
                      |...+..++.+  +.+|+.+|++||+|+++  .+.+...+.++|+++.+..     .+ .++.++ -|..  .-..+...
T Consensus         6 ~~~~~~~~k~~~t~~Eaa~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l-~i~~~~gas~~~~~~~~~~~a   84 (501)
T COG0427           6 MRLRELYKKKLITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDL-RVLLFTGASIGADEDLKLAEA   84 (501)
T ss_pred             hhhHHHhhhhcCCHHHHHHhhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCce-EEEEEeccccCcchhhhhhcc
Confidence            33344444444  89999999999999998  4457778888888764221     23 233333 3332  22222221


Q ss_pred             C----------------------CcEE---------EcCC-Cc-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhc
Q 024953           95 G----------------------IPLS---------DLDS-YP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC  141 (260)
Q Consensus        95 g----------------------i~v~---------~l~~-~~-~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A  141 (260)
                      |                      ....         .+.+ .. .+|++++-+..++.+|.++.+.+-...++  ....|
T Consensus        85 ~~~~~r~p~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~~G~~i~g~svg~~~~--~~~~A  162 (501)
T COG0427          85 GEVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDEHGYIIPGTSVGNSKS--WAEGA  162 (501)
T ss_pred             cchhhhCccccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccCCceEeeccccCCcHH--HHhhc
Confidence            1                      1000         0111 12 48999999999999998877765555554  33568


Q ss_pred             CcEEEEEeC
Q 024953          142 KKFVVIVDE  150 (260)
Q Consensus       142 ~~~IlLaD~  150 (260)
                      +++|+-+..
T Consensus       163 ~kVIveVN~  171 (501)
T COG0427         163 EKVIVEVNK  171 (501)
T ss_pred             cEEEEEhhc
Confidence            888776643

>PRK15418 transcriptional regulator LsrR; Provisional

Probab=91.46  E-value=0.25  Score=46.16  Aligned_cols=48  Identities=10%  Similarity=0.252  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           32 ELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        32 ~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      +..+++|+.|++    ++++|++|+++-|+|+..+++++....   ..+++++|+
T Consensus        96 ~~~~~vg~~aA~~L~~~l~~~~~IGvswG~Tl~~~~~~l~~~~---~~~~~~vV~  147 (318)
T PRK15418         96 DIGGRLGIGAAHMLMSLLQPQQLLAVGFGEATMNTLQHLSGFI---SSQQIRLVT  147 (318)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCEEEEcchHHHHHHHHhccccC---CCCCCEEEE
Confidence            345678888876    558999999999999999999986311   113677775

>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]

Probab=88.45  E-value=1.5  Score=42.01  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=61.5

Q ss_pred             CcCCCEEEE-----CCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHH-H---HhCCC-------------------
Q 024953           45 VESGMVLGL-----GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ-A---VSLGI-------------------   96 (260)
Q Consensus        45 I~dg~~I~L-----gsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~-l---~~~gi-------------------   96 (260)
                      ++|||+|-+     |.-.++..+.+.+++.    +++|+|+-++|+.-... +   .+.|+                   
T Consensus        62 lkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~m----GfKnLtlA~SSl~~~h~pliehIknGVVt~I~sSGlRg~lg~~IS~  137 (513)
T COG3051          62 LKDGMTISFHHAFRGGDLVVNMVMDVIAKM----GFKNLTLASSSLSDCHAPLVEHIKNGVVTRIYSSGLRGPLGEEISR  137 (513)
T ss_pred             ccCCeEEEeeehhcCCceeHHHHHHHHHHh----CccceeeccchhhhhhHHHHHHHhcCEeeeEeeccccchHHHHHhh
Confidence            799999976     5566777777777754    45699999999864321 1   11221                   


Q ss_pred             -----cEE---------Ec-CCCccccEEEEccCcccCCCCc----ccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953           97 -----PLS---------DL-DSYPVVDLAIDGADEVDPFMNL----VKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        97 -----~v~---------~l-~~~~~~D~af~GadgId~~~~~----i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                           ++.         .+ ....++|+||+|+-..|.-|++    =|..-+.+=.-.+=++.|+++++|.|+
T Consensus       138 Gll~~PV~i~SHGGRv~~i~sGel~IDvAFlgvP~cDe~GNaNG~~GKa~cGSlGYA~vDA~yAd~VV~lTe~  210 (513)
T COG3051         138 GLLAEPVQIHSHGGRVHLVQSGELHIDVAFLGVPSCDEFGNANGFTGKACCGSLGYAMVDAQYADQVVMLTEE  210 (513)
T ss_pred             hHhhCCeEEeccCceEEEeecCceeEEEEEecCCChhhhcCcCCCcCccccccccceeechhhcceEEEehhh
Confidence                 111         11 1347999999998887764332    122222222222235778999888875

>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC

Probab=87.13  E-value=0.98  Score=33.66  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             cccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccc
Q 024953          163 AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLD  242 (260)
Q Consensus       163 ~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~  242 (260)
                      .+=|.+.|..+..+.+.|..+   .|.+.        ...+++|++|+=+--.. ..+..+.-+.|+.+|||....+-..
T Consensus         7 s~vV~~~p~~~~~v~~~l~~~---~gvEV--------h~~~~~GKiVVtiE~~~-~~~~~~~~~~i~~l~GVlsa~lvYh   74 (79)
T PF03927_consen    7 SLVVHARPERLEEVAEALAAI---PGVEV--------HAVDEDGKIVVTIEAES-SEEEVDLIDAINALPGVLSASLVYH   74 (79)
T ss_dssp             EEEEEE-CCCHHHHHHHHCCS---TTEEE--------EEEETTTEEEEEEEESS-HHHHHHHHHHHCCSTTEEEEEESSE
T ss_pred             EEEEEECchhHHHHHHHHHcC---CCcEE--------EeeCCCCeEEEEEEeCC-hHHHHHHHHHHHcCCCceEEEEEEE
Confidence            355778899999999999997   35543        34466788887554332 4556777778999999999887654


Q ss_pred             c
Q 024953          243 M  243 (260)
Q Consensus       243 ~  243 (260)
                      .
T Consensus        75 ~   75 (79)
T PF03927_consen   75 Y   75 (79)
T ss_dssp             E
T ss_pred             E
Confidence            3

The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.

>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2

Probab=85.32  E-value=4.5  Score=39.46  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHh------cCcCCCEEEECCChhHHHHHHHHHhHHhc
Q 024953           30 QDELKKIAAYKAVE------FVESGMVLGLGTGSTAKHAVDRIGELLRQ   72 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~------lI~dg~~I~LgsGST~~~la~~L~~~~~~   72 (260)
                      .......||+.|++      |++||-+.--|+|-+.+.++++|.+..++
T Consensus       205 ~~P~~L~IA~~aa~vI~asg~~kdGFSfQtGaGGaSLAv~~~l~~~M~~  253 (466)
T PF04223_consen  205 KDPRELLIAEYAAKVIEASGYFKDGFSFQTGAGGASLAVARFLREKMRE  253 (466)
T ss_dssp             --HHHHHHHHHHHHHHHCTTT-STTEEEE--SSHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhCcceecCceEEcCCchHHHHHHHHHHHHHHH
Confidence            34556778888887      56999999999999999999999987654

8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.

>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=83.20  E-value=2.5  Score=29.70  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             EEEecCc--HHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHH-hcCCCcEEee
Q 024953          166 VEVVPYC--WKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDN-ILRLAGVVEH  237 (260)
Q Consensus       166 vEV~p~~--~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~-l~~i~GVve~  237 (260)
                      |++.|-.  +..+.+.|.++       ++++.   -..+|-..++++-+.+.. ..+..++-.. |..+|||..+
T Consensus         3 V~~~~~~~~~~~~~~~l~~~-------p~V~~---~~~vtG~~d~~~~v~~~d-~~~l~~~i~~~l~~~~gV~~~   66 (74)
T PF01037_consen    3 VKVEPGHDAYDEFAEALAEI-------PEVVE---CYSVTGEYDLILKVRARD-MEELEEFIREKLRSIPGVRRT   66 (74)
T ss_dssp             EEESTTGTHHHHHHHHHHTS-------TTEEE---EEEESSSSSEEEEEEESS-HHHHHHHHHHTHHTSTTEEEE
T ss_pred             EEEcCCCchHHHHHHHHHcC-------CCEEE---EEEEeCCCCEEEEEEECC-HHHHHHHHHHHhhcCCCEEEE
Confidence            5566766  77777777775       33332   245566779999999864 5555555555 9999999875

One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....

>TIGR01110 mdcA malonate decarboxylase, alpha subunit

Probab=81.13  E-value=13  Score=37.26  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             HHHHHHhcCcCCCEEEECCC--hhHHHHHHHHHhHHhcCCCCCEEEECC--cHHHHHHHHhCCC----------------
Q 024953           37 AAYKAVEFVESGMVLGLGTG--STAKHAVDRIGELLRQGKLTNIVGIPT--SKKTHEQAVSLGI----------------   96 (260)
Q Consensus        37 IA~~Aa~lI~dg~~I~LgsG--ST~~~la~~L~~~~~~~~l~~itvVTn--Sl~~a~~l~~~gi----------------   96 (260)
                      +......+|+|||+|.|..=  --...+++.|.+-. ....++++.|-.  +......+...|+                
T Consensus        30 ~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~-~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~~R~  108 (543)
T TIGR01110        30 GVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCD-PEKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQSLRI  108 (543)
T ss_pred             HHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhC-ccccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcchHHH
Confidence            44555678999999999644  34555666554322 122346777665  3333333433332                


Q ss_pred             ---------cEEEcC----------CCccccEEEEccCcccCCCCcccCc
Q 024953           97 ---------PLSDLD----------SYPVVDLAIDGADEVDPFMNLVKGR  127 (260)
Q Consensus        97 ---------~v~~l~----------~~~~~D~af~GadgId~~~~~i~~~  127 (260)
                               .+..+.          ...++|++++-+.-.|.+|++..|.
T Consensus       109 ~~av~~G~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~slG~  158 (543)
T TIGR01110       109 AQLLEDGKLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLYTGP  158 (543)
T ss_pred             HHHHHcCCeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEEecC
Confidence                     111110          1346899999999999999886543

This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=81.07  E-value=2.7  Score=41.60  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhcC------cCCCEEEECCChhHHHHHHHHHhHHh
Q 024953           32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGELLR   71 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI------~dg~~I~LgsGST~~~la~~L~~~~~   71 (260)
                      +..++||+.++++|      +||.++=+|.|.....++++|.++.+
T Consensus       230 p~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~mk  275 (492)
T TIGR01584       230 PKELLIAKMANDVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKMI  275 (492)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHHH
Confidence            55688999999998      89999999999999999999987643

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another

Probab=80.42  E-value=3.4  Score=35.89  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             HHHHHHhcCcCCCEEEEC----CChhHHHHHHHHHhH
Q 024953           37 AAYKAVEFVESGMVLGLG----TGSTAKHAVDRIGEL   69 (260)
Q Consensus        37 IA~~Aa~lI~dg~~I~Lg----sGST~~~la~~L~~~   69 (260)
                      ++++++++|+|||+|++|    +| +-..++.+|.++
T Consensus         4 ~~eAva~~I~dG~~v~~GG~~~~~-~P~al~~~l~r~   39 (217)
T PF01144_consen    4 LAEAVARLIRDGDTVAVGGFGSSG-IPMALVRELARQ   39 (217)
T ss_dssp             HHHHHTCT--TTEEEEE-SBTTBT-HHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCEEEECCCcccC-cHHHHHHHHHhc
Confidence            344455599999999999    66 445677777654

They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
2f8m_A	244	Ribose 5-Phosphate Isomerase From Plasmodium Falcip		1e-47
1uj5_A	227	Crystal Structure Of Thermus Thermophilus Ribose-5-		7e-45
1lk5_A	229	Structure Of The D-Ribose-5-Phosphate Isomerase Fro		5e-44
1uj4_A	227	Crystal Structure Of Thermus Thermophilus Ribose-5-		2e-43
4gmk_A	228	Crystal Structure Of Ribose 5-Phosphate Isomerase F		7e-42
3l7o_A	225	Crystal Structure Of Ribose-5-Phosphate Isomerase A		1e-41
3hhe_A	255	Crystal Structure Of Ribose-5-Phosphate Isomerase A		9e-39
3ixq_A	226	Structure Of Ribose 5-Phosphate Isomerase A From Me		1e-32
3enq_A	235	Substrate And Inhibitor Complexes Of Ribose 5-Phosp		2e-29
3kwm_A	224	Crystal Structure Of Ribose-5-Isomerase A Length =		5e-27
1xtz_A	264	Crystal Structure Of The S. Cerevisiae D-Ribose-5-P		6e-27
1ks2_A	219	Crystal Structure Analysis Of The Rpia, Structural		7e-27
1lkz_A	219	Crystal Structure Of D-Ribose-5-Phosphate Isomerase		1e-26
1m0s_A	219	Northeast Structural Genomics Consortium (Nesg Id I		5e-24
3u7j_A	239	Crystal Structure Of Ribose-5-Phosphate Isomerase A		7e-24

>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum Length = 244

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 147/229 (64%), Gaps = 3/229 (1%)
Query: 31  DELKKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE 89
           D LKKI AYKAV E+V+S M +GLGTGST  + ++RI  LL+ GKL ++V IPTS  T  
Sbjct: 10  DSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTEL 69
Query: 90  QAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
           +A  LGIPL+ L+ +  +D+ IDG DE+D  +NL+KGRGG+L+REK+V  +    ++I D
Sbjct: 70  KARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGD 129
Query: 150 ESKLVPH-LGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
           ESKL  + LG +G A+P+E++ + ++   + L  ++   GC  K+R    + F+TDN NY
Sbjct: 130 ESKLCTNGLGMTG-AVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGEIFITDNKNY 188
Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257
           ++D +  + I DL      I    GVV+HG+F++M    +++   G  +
Sbjct: 189 IVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVL 237

>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed With Ribose-5-Phosphate Length = 227

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/225 (46%), Positives = 143/225 (63%), Gaps = 8/225 (3%)
Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           +  KK AA+ A+ +V+ GMV+GLGTGSTA++AV  +   LR+G+L  +VG+PTS+ T E 
Sbjct: 6   ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A   GIPL DL     VDLAIDGADE+ P + L+KG GG+LLREK+VE   K+F+VI D 
Sbjct: 66  AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           +K VP LG     +PVE+VP+ ++ T K + DL    G   +LR  G++ + TD G+ + 
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIA 178
Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           D      IGD       +L + GVVE G+F+ MAT  +VA   GV
Sbjct: 179 DCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222

>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From Pyrococcus Horikoshii Length = 229

Iteration: 1
 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 150/232 (64%), Gaps = 12/232 (5%)
Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +  +E+KKIAA +A++F+E  MV+GLGTGST  + +  +GE L++G++++IVG+PTS + 
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              A+   IP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++E     F+V+
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGEQPFVTDN 205
           VDE KLV +L    + +P+EV+P  WK   + L  +F      A+LR     + P +TDN
Sbjct: 121 VDERKLVDYL-CQKMPVPIEVIPQAWKAIIEELS-IF---NAKAELRMGVNKDGPVITDN 175
Query: 206 GNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           GN++ID    +  D  D+++  + I    GV+E+G+F D+A  VIV +  GV
Sbjct: 176 GNFIIDAKFPRIDDPLDMEIELNTI---PGVIENGIFADIADIVIVGTREGV 224

>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-phosphate Isomerase Length = 227

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 141/225 (62%), Gaps = 8/225 (3%)
Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           +  KK AA+ A+ +V+ G V+GLGTGSTA++AV  +   LR+G+L  +VG+PTS+ T E 
Sbjct: 6   ESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A   GIPL DL     VDLAIDGADE+ P + L+KG GG+LLREK+VE   K+F+VI D 
Sbjct: 66  AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEFIVIADH 124
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           +K VP LG     +PVE+VP+ ++ T K + DL    G   +LR  G++ + TD G+ + 
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRXDGDEFYFTDGGHLIA 178
Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           D      IGD       +L + GVVE G+F+  AT  +VA   GV
Sbjct: 179 DCRFGP-IGDPLGLHRALLEIPGVVETGLFVGXATRALVAGPFGV 222

>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The Probiotic Bacterium Lactobacillus Salivarius Ucc118 Length = 228

Iteration: 1
 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 141/227 (62%), Gaps = 9/227 (3%)
Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
            QDELK++   KAVE+++ GM++GLGTGST K+ VD +G+ + +  L +IVG+ TS +T 
Sbjct: 3   NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTA 61
Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
           EQA SLGI + D+D    +DL IDGADE+      +KG G +LL EK+V     K + IV
Sbjct: 62  EQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIV 121
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFV-TDNGN 207
           DESK+V  LG     +PVEV+PY      KR    FE+ G   + R   +   + TD+ N
Sbjct: 122 DESKMVDDLG--QFPLPVEVIPYGSGTVFKR----FEEKGLNPEFRKNEDGSLLHTDSDN 175
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 254
           Y+IDL+L K I + K   D ++   GVVEHG+FLD+  TVIV  + G
Sbjct: 176 YIIDLHLGK-IENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDG 221

>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Streptococcus Mutans Ua159 Length = 225

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 141/230 (61%), Gaps = 14/230 (6%)
Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           +ELKKIA  +A ++VE GM++GLGTGSTA + V+ +G  +++  L  ++G+ TS +T  Q
Sbjct: 2   EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQ 60
Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A +LGIPL  +D    VD+ +DGADEVDP  N +KG GG+LL EK+V    K ++ +VDE
Sbjct: 61  AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           SK+V  LG     +PVEVV Y     A+RL   FE  G     R      FVTD  N++I
Sbjct: 121 SKMVDTLG--AFRLPVEVVQYG----AERLFREFEKKGYKPSFREYDGVRFVTDMKNFII 174
Query: 211 DLYLKKDIGDL--KVASDNIL-RLAGVVEHGMFLDMATTVIVASELGVTI 257
           DL    D+G +   +A  N+L    GVVEHG+F  M   VIVA + GV I
Sbjct: 175 DL----DLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRI 220

>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Bartonella Henselae Length = 255

Iteration: 1
 Score =  156 bits (395), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 7/221 (3%)
Query: 32  ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
           +LKK+AA KA+EFVE  M LG+G+GST    +  +GE +  G    +  + TS+ + +  
Sbjct: 26  QLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANG--LRVTCVATSQYSEQLC 83
Query: 92  VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
              G+P+S L+  P +DL IDGADE+ P M L+KG GG+LL EK+V  A +   VI DE+
Sbjct: 84  HKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADET 143
Query: 152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGEQPFVTDNGNYV 209
           K+V  LG    A+P+EV P+    T   ++   ++ G   +  LR  G+ PF TD G+++
Sbjct: 144 KMVKTLG--AFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFI 201
Query: 210 IDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA 250
            D +  + I   K+ S+ +L + GVVEHG+FL +A+  IVA
Sbjct: 202 FDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVA 241

>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From Methanocaldococcus Jannaschii Length = 226

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 138/229 (60%), Gaps = 9/229 (3%)
Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           ++ ++LK   A +AV+ V+ GMV+GLGTGSTA   +  +G  +R+ +LT + GIPTS + 
Sbjct: 1   MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELT-VFGIPTSFEA 59
Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDP-FMNLVKGRGGSLLREKMVEGACKKFVV 146
              A+   IPL  LD Y  VD+A DGADEV+   + L+KG GG   +EK+V+    +FVV
Sbjct: 60  KMLAMQYEIPLVTLDEYD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 147 IVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNG 206
           +VDESKLV  L G    +PVEV+P  ++   + L ++  +   V +L      P +TDNG
Sbjct: 119 LVDESKLVKKL-GEKFPIPVEVIPSAYRVVIRALSEMGGE--AVIRLGDRKRGPVITDNG 175
Query: 207 NYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 255
           N +ID+++  +I D       I  + GVVE+G+F  +   V+V ++ GV
Sbjct: 176 NMIIDVFM--NIDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGV 221

>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate Isomerase A From Vibrio Vulnificus Yj016 Length = 235

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 15/222 (6%)
Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +TQDE+KK A + A+++VE G ++G+GTGST  H +D +G +  + K      + +S  +
Sbjct: 18  MTQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEEIKGA----VSSSVAS 73
Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            E+  +LGI + D +    +D+ +DGADE++    ++KG G +L REK+V     KF+ I
Sbjct: 74  TEKLEALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICI 133
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
           VD +K V  LG     +PVEV+P    + A++L  L  D  C         +  +TDNGN
Sbjct: 134 VDGTKAVDVLG--TFPLPVEVIPMARSYVARQLVKLGGDP-CY-------REGVITDNGN 183
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 249
            ++D+Y  K I + K   D I  + GVV  G+F      V++
Sbjct: 184 VILDVYGMK-ITNPKQLEDQINAIPGVVTVGLFAHRGADVVI 224

>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A Length = 224

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 26/230 (11%)
Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
            QDELKK+AA +A + + + + LG+GTGST    ++ +  +  + K+  +V   +S+ + 
Sbjct: 8   NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEEL--VNYRDKIKTVVS--SSEDST 63
Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
            +  +LG  + DL+    +DL IDGADE +    L+KG G +L REK+   A KKF+ I+
Sbjct: 64  RKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICII 123
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPF-----VT 203
           DESK V  LG     +P+EV+P    + A+++  L             G QP      +T
Sbjct: 124 DESKKVNTLG--NFPLPIEVIPMARSYIARQIVKL-------------GGQPVYREQTIT 168
Query: 204 DNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF-LDMATTVIVASE 252
           DNGN ++D+Y  K    LK+ ++ + ++ GVV +G+F L  A TVI+A++
Sbjct: 169 DNGNVILDVYNLKIDNPLKLETE-LNQITGVVTNGIFALKPADTVIMATK 217

>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae D-Ribose-5-Phosphate Isomerase: Comparison With The Archeal And Bacterial Enzymes Length = 264

Iteration: 1
 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 11/234 (4%)
Query: 31  DELKKIAAYKAVE---FVESGMVLGLGTGSTAKHAVDRIGELLRQGKL----TNIVGIPT 83
           ++ K+ AAY+AV+     +   ++G+G+GST  +  +RIG+ L   K     +  + IPT
Sbjct: 19  EDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPT 78
Query: 84  SKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKK 143
             ++    +   + L  ++ YP +D+A DGADEVD  + L+KG G  L +EK+V  + K 
Sbjct: 79  GFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKT 138
Query: 144 FVVIVDESKLVP-HLGGSGL-AMPVEVVPYCW-KFTAKRLQDLFEDCGCVAKLRTTGEQP 200
           F+V+ D  K  P HLG +    +P+E+VP  + +     L+ L  +   + +  +    P
Sbjct: 139 FIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGP 198
Query: 201 FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 254
            VTDN N++ID     +I D +     I  L GVVE G+F+D A+     +  G
Sbjct: 199 VVTDNNNFIIDADF-GEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDG 251

>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural Genomics, Protein Ec1268. Length = 219

Iteration: 1
 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +TQDELKK   + A+++V+ G ++G+GTGSTA H +D +G    +G++   V   +S  +
Sbjct: 1   MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT--XKGQIEGAV--SSSDAS 56
Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            E+  SLGI + DL+    + + +DGADE++     +KG G +L REK++    +KF+ I
Sbjct: 57  TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
            D SK V  LG     +PVEV+P      A++L  L          R    Q  VTDNGN
Sbjct: 117 ADASKQVDILG--KFPLPVEVIPXARSAVARQLVKLGG--------RPEYRQGVVTDNGN 166
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTV 247
            ++D++   +I D     + I  + GVV  G+F +    V
Sbjct: 167 VILDVH-GXEILDPIAXENAINAIPGVVTVGLFANRGADV 205

>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia) From Escherichia Coli. Length = 219

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 121/219 (55%), Gaps = 15/219 (6%)
Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
           TQDELKK   + A+++V+ G ++G+GTGSTA H +D +G    +G++   V   +S  + 
Sbjct: 2   TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTX--KGQIEGAV--SSSDAST 57
Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
           E+  SLGI + DL+    + + +DGADE++     +KG G +L REK++    +KF+ I 
Sbjct: 58  EKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIA 117
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
           D SK V  LG     +PVEV+P      A++L  L    G   + R    Q  VTDNGN 
Sbjct: 118 DASKQVDILG--KFPLPVEVIPXARSAVARQLVKL----GGRPEYR----QGVVTDNGNV 167
Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTV 247
           ++D++   +I D     + I  + GVV  G+F +    V
Sbjct: 168 ILDVH-GXEILDPIAXENAINAIPGVVTVGLFANRGADV 205

>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21) Length = 219

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 15/231 (6%)
Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           + Q E+KK+AA  A+++V++  ++G+G+GST    ++ +G +  + K+   V    SK++
Sbjct: 1   MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVA--ASKES 56
Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            E     GI + + +    +D+ +DGADE++P   ++KG G +L REK+V    KKF+ I
Sbjct: 57  EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
           VD SK V  L GS   +PVEV+P       ++L  L    G   + R    +  VTDNGN
Sbjct: 117 VDSSKQVDVL-GSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYR----EGVVTDNGN 167
Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF-LDMATTVIVASELGVTI 257
            ++D++    +  +++  + +  +AGVV +G+F L  A  VIV +  G  +
Sbjct: 168 VILDVHNFSILNPVEIEKE-LNNVAGVVTNGIFALRGADVVIVGTPEGAKV 217

>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis Length = 239

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 18/240 (7%)
Query: 26  VILTQDELKKIAAYKAVEFVE----SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGI 81
           +++TQDELK++    A  +V      G V+G+GTGSTA   +D +  +  + +      +
Sbjct: 7   LLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKDRYRGA----V 62
Query: 82  PTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC 141
            +S  T E+  S GI + DL+    + + +DGADE+D    ++KG GG+L REK+V    
Sbjct: 63  SSSVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVA 122
Query: 142 KKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QP 200
           + FV I D SK V  LG     +PVEVVP       +RL  L    G V  LR   +  P
Sbjct: 123 ETFVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRLAAL----GGVPVLRVKQDGTP 176
Query: 201 FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM-ATTVIVASELGV-TIR 258
           +VTDNGN ++D+   + I D +     I    GVV  G+F    A   ++ +E GV T+R
Sbjct: 177 YVTDNGNEILDVKGLR-IDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGVETLR 235

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
2f8m_A	244	Ribose 5-phosphate isomerase; structural genomics,	1e-119
1lk5_A	229	D-ribose-5-phosphate isomerase; alpha/beta structu	1e-113
1uj6_A	227	Ribose 5-phosphate isomerase; enzyme-inhibitor com	1e-112
3hhe_A	255	Ribose-5-phosphate isomerase A; niaid, ssgcid, dec	1e-111
3l7o_A	225	Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep	1e-110
1xtz_A	264	Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha	1e-107
2pjm_A	226	Ribose-5-phosphate isomerase A; 3D-structure, stru	1e-104
1m0s_A	219	Ribose-5-phosphate isomerase A; D-ribose 5-phospha	1e-102
1o8b_A	219	Ribose 5-phosphate isomerase; RPIA, PSI, protein S	1e-101
3uw1_A	239	Ribose-5-phosphate isomerase A; ssgcid, seattle st	1e-101
3kwm_A	224	Ribose-5-phosphate isomerase A; structural genomic	1e-100
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Length = 244

 Score =  338 bits (869), Expect = e-119
 Identities = 97/234 (41%), Positives = 146/234 (62%), Gaps = 2/234 (0%)

Query: 29  TQDELKKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
             D LKKI AYKAV E+V+S M +GLGTGST  + ++RI  LL+ GKL ++V IPTS  T
Sbjct: 8   HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDT 67

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
             +A  LGIPL+ L+ +  +D+ IDG DE+D  +NL+KGRGG+L+REK+V  +    ++I
Sbjct: 68  ELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIII 127

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
            DESKL  +  G   A+P+E++ + ++   + L  ++   GC  K+R    + F+TDN N
Sbjct: 128 GDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGEIFITDNKN 187

Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRNK 260
           Y++D +  + I DL      I    GVV+HG+F++M    +++   G V   NK
Sbjct: 188 YIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241

>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Length = 229

 Score =  322 bits (829), Expect = e-113
 Identities = 94/235 (40%), Positives = 146/235 (62%), Gaps = 8/235 (3%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +  +E+KKIAA +A++F+E  MV+GLGTGST  + +  +GE L++G++++IVG+PTS + 
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              A+   IP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++E     F+V+
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGEQPFVTDN 205
           VDE KLV +L    + +P+EV+P  WK   + L          A+LR     + P +TDN
Sbjct: 121 VDERKLVDYLCQK-MPVPIEVIPQAWKAIIEELSIF----NAKAELRMGVNKDGPVITDN 175

Query: 206 GNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           GN++ID    + I D       +  + GV+E+G+F D+A  VIV +  GV    +
Sbjct: 176 GNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER 229

>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Length = 227

 Score =  320 bits (822), Expect = e-112
 Identities = 104/229 (45%), Positives = 143/229 (62%), Gaps = 8/229 (3%)

Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
             +  KK AA+ A+ +V+ GMV+GLGTGSTA++AV  +   LR+G+L  +VG+PTS+ T 
Sbjct: 4   PLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATE 63

Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
           E A   GIPL DL     VDLAIDGADE+ P + L+KG GG+LLREK+VE   K+F+VI 
Sbjct: 64  ELAKREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIA 122

Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
           D +K VP LG   +  PVE+VP+ ++ T K + DL    G   +LR  G++ + TD G+ 
Sbjct: 123 DHTKKVPVLGRGPV--PVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHL 176

Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 257
           + D      IGD       +L + GVVE G+F+ MAT  +VA   GV  
Sbjct: 177 IADCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEE 224

>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Length = 255

 Score =  321 bits (824), Expect = e-111
 Identities = 89/242 (36%), Positives = 136/242 (56%), Gaps = 8/242 (3%)

Query: 21  SSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG 80
            +  P  +   +LKK+AA KA+EFVE  M LG+G+GST    +  +GE +  G    +  
Sbjct: 15  QTQGPGSMNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANGL--RVTC 72

Query: 81  IPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGA 140
           + TS+ + +     G+P+S L+  P +DL IDGADE+ P M L+KG GG+LL EK+V  A
Sbjct: 73  VATSQYSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASA 132

Query: 141 CKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED--CGCVAKLRTTGE 198
            +   VI DE+K+V  LG   L  P+EV P+    T   ++   ++        LR  G+
Sbjct: 133 SRAMFVIADETKMVKTLGAFAL--PIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGD 190

Query: 199 QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTI 257
            PF TD G+++ D +  + I   K+ S+ +L + GVVEHG+FL +A+  IVA     + +
Sbjct: 191 DPFKTDGGHFIFDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVAMADSQIKV 249

Query: 258 RN 259
             
Sbjct: 250 LE 251

>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Length = 225

 Score =  316 bits (813), Expect = e-110
 Identities = 98/230 (42%), Positives = 134/230 (58%), Gaps = 8/230 (3%)

Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           +ELKKIA  +A ++VE GM++GLGTGSTA + V+ +G  +++  L  ++G+ TS +T  Q
Sbjct: 2   EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQ 60

Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A +LGIPL  +D    VD+ +DGADEVDP  N +KG GG+LL EK+V    K ++ +VDE
Sbjct: 61  AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120

Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVI 210
           SK+V  LG   L  PVEVV Y  +   +  +      G     R      FVTD  N++I
Sbjct: 121 SKMVDTLGAFRL--PVEVVQYGAERLFREFEKK----GYKPSFREYDGVRFVTDMKNFII 174

Query: 211 DLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 260
           DL L   I D     + +    GVVEHG+F  M   VIVA + GV I   
Sbjct: 175 DLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRILEA 223

>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Length = 264

 Score =  309 bits (793), Expect = e-107
 Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 16/261 (6%)

Query: 13  VETGLSPLSSPPPVILTQDELKKIAAYKAVE---FVESGMVLGLGTGSTAKHAVDRIGEL 69
           +  G+  + +   +    ++ K+ AAY+AV+     +   ++G+G+GST  +  +RIG+ 
Sbjct: 1   MAAGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQY 60

Query: 70  LRQGKLT----NIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVK 125
           L   K        + IPT  ++    +   + L  ++ YP +D+A DGADEVD  + L+K
Sbjct: 61  LHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIK 120

Query: 126 GRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGL--AMPVEVVPYCWKFTAKRLQDL 183
           G G  L +EK+V  + K F+V+ D  K  P   G      +P+E+VP  +      L + 
Sbjct: 121 GGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQ 180

Query: 184 FEDCGCVAKLRTTGE---QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF 240
                    +R  G     P VTDN N++ID    + I D +     I  L GVVE G+F
Sbjct: 181 L--HAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGE-ISDPRKLHREIKLLVGVVETGLF 237

Query: 241 LDMATTVIVASELG-VTIRNK 260
           +D A+     +  G V +  K
Sbjct: 238 IDNASKAYFGNSDGSVEVTEK 258

>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Length = 219

 Score =  295 bits (757), Expect = e-102
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 15/233 (6%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           + Q E+KK+AA  A+++V++  ++G+G+GST    ++ +G +    K      +  SK++
Sbjct: 1   MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKES 56

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            E     GI + + +    +D+ +DGADE++P   ++KG G +L REK+V    KKF+ I
Sbjct: 57  EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
           VD SK V  L GS   +PVEV+P       ++L  L    G   + R    +  VTDNGN
Sbjct: 117 VDSSKQVDVL-GSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYR----EGVVTDNGN 167

Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF-LDMATTVIVASELGVTIRN 259
            ++D++    I +       +  +AGVV +G+F L  A  VIV +  G  + +
Sbjct: 168 VILDVHNFS-ILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKVID 219

>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Length = 219

 Score =  293 bits (752), Expect = e-101
 Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 16/234 (6%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +TQDELKK   + A+++V+ G ++G+GTGSTA H +D +G +    K      + +S  +
Sbjct: 1   MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM----KGQIEGAVSSSDAS 56

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            E+  SLGI + DL+    + + +DGADE++  M ++KG G +L REK++    +KF+ I
Sbjct: 57  TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICI 116

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGN 207
            D SK V  LG   L  PVEV+P      A++L  L    G   + R    Q  VTDNGN
Sbjct: 117 ADASKQVDILGKFPL--PVEVIPMARSAVARQLVKL----GGRPEYR----QGVVTDNGN 166

Query: 208 YVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM-ATTVIVASELGVTIRNK 260
            ++D++  + I D     + I  + GVV  G+F +  A   ++ +  GV    K
Sbjct: 167 VILDVHGME-ILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK 219

>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Length = 239

 Score =  292 bits (750), Expect = e-101
 Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 17/242 (7%)

Query: 22  SPPPVILTQDELKKIAAYKAVEFVE----SGMVLGLGTGSTAKHAVDRIGELLRQGKLTN 77
               +++TQDELK++    A  +V      G V+G+GTGSTA   +D +  +    K   
Sbjct: 3   GSMTLLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAV----KDRY 58

Query: 78  IVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMV 137
              + +S  T E+  S GI + DL+    + + +DGADE+D    ++KG GG+L REK+V
Sbjct: 59  RGAVSSSVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIV 118

Query: 138 EGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG 197
               + FV I D SK V  LG   L  PVEVVP       +RL  L    G V  LR   
Sbjct: 119 ASVAETFVCIADASKRVAMLGQFPL--PVEVVPMARTAIGRRLAAL----GGVPVLRVKQ 172

Query: 198 E-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM-ATTVIVASELGV 255
           +  P+VTDNGN ++D+   + I D +     I    GVV  G+F    A   ++ +E GV
Sbjct: 173 DGTPYVTDNGNEILDVKGLR-IDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGV 231

Query: 256 TI 257
             
Sbjct: 232 ET 233

>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Length = 224

 Score =  290 bits (744), Expect = e-100
 Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 16/230 (6%)

Query: 29  TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
            QDELKK+AA +A + + + + LG+GTGST    ++ +       +      + +S+ + 
Sbjct: 8   NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNY----RDKIKTVVSSSEDST 63

Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
            +  +LG  + DL+    +DL IDGADE +    L+KG G +L REK+   A KKF+ I+
Sbjct: 64  RKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICII 123

Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNY 208
           DESK V  LG   L  P+EV+P    + A+++  L    G     R    +  +TDNGN 
Sbjct: 124 DESKKVNTLGNFPL--PIEVIPMARSYIARQIVKL----GGQPVYR----EQTITDNGNV 173

Query: 209 VIDLYLKKDIGDLKVASDNILRLAGVVEHGMF-LDMATTVIVASELGVTI 257
           ++D+Y  K I +       + ++ GVV +G+F L  A TVI+A++    +
Sbjct: 174 ILDVYNLK-IDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIV 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 52/341 (15%), Positives = 89/341 (26%), Gaps = 131/341 (38%)

Query: 11  SSVETGLSPLSSPPPVI------LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVD 64
             V   LS  ++    +      LT DE+K +              L        +  + 
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----------KYLDCRPQDLPREVLT 324

Query: 65  R-------IGELLRQGKLT--NIVGIPTSKKTHEQAVSLGI--PLSDLDSYPVVDLAI-- 111
                   I E +R G  T  N   +   K T     SL +  P      +    L++  
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFP 382

Query: 112 DGAD----------------EVDPFMN------LVKGRGGSL------------------ 131
             A                 +V   +N      LV+ +                      
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 132 --LREKMVE--GACKKFVVIVDESKLVP-------------HLGGSGLAMPVEVVPYCWK 174
             L   +V+     K F    D   L+P             HL        + +      
Sbjct: 443 YALHRSIVDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR---- 494

Query: 175 FTAKRLQDL-FEDCGCVAKLRTTGE------------------QPFVTDNGN----YVID 211
                  D  F +     K+R                      +P++ DN       V  
Sbjct: 495 ---MVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 212 L--YLKKDIGDLKVASD--NILRLAGVVEHGMFLDMATTVI 248
           +  +L K I +  + S   ++LR+A + E     + A   +
Sbjct: 548 ILDFLPK-IEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
3l7o_A	225	Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep	100.0
3hhe_A	255	Ribose-5-phosphate isomerase A; niaid, ssgcid, dec	100.0
2pjm_A	226	Ribose-5-phosphate isomerase A; 3D-structure, stru	100.0
4gmk_A	228	Ribose-5-phosphate isomerase A; D-ribose-5-phospha	100.0
3uw1_A	239	Ribose-5-phosphate isomerase A; ssgcid, seattle st	100.0
1lk5_A	229	D-ribose-5-phosphate isomerase; alpha/beta structu	100.0
2f8m_A	244	Ribose 5-phosphate isomerase; structural genomics,	100.0
1uj6_A	227	Ribose 5-phosphate isomerase; enzyme-inhibitor com	100.0
1xtz_A	264	Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha	100.0
3ixq_A	226	Ribose-5-phosphate isomerase A; structural genomic	100.0
3kwm_A	224	Ribose-5-phosphate isomerase A; structural genomic	100.0
1m0s_A	219	Ribose-5-phosphate isomerase A; D-ribose 5-phospha	100.0
1o8b_A	219	Ribose 5-phosphate isomerase; RPIA, PSI, protein S	100.0
1vb5_A	276	Translation initiation factor EIF-2B; 2.20A {Pyroc	99.32
3ecs_A	315	Translation initiation factor EIF-2B subunit alpha	98.13
2w48_A	315	Sorbitol operon regulator; SORC, activator, repres	98.07
3a11_A	338	Translation initiation factor EIF-2B, delta subun;	98.02
2o0m_A	345	Transcriptional regulator, SORC family; structural	97.99
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	97.87
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	97.8
1t9k_A	347	Probable methylthioribose-1-phosphate isomerase; s	97.77
2yvk_A	374	Methylthioribose-1-phosphate isomerase; methionine	97.72
2a0u_A	383	Initiation factor 2B; SGPP, structural genomics, P	97.69
1t5o_A	351	EIF2BD, translation initiation factor EIF2B, subun	97.67
3rrl_A	235	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	97.47
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	97.45
1k6d_A	220	Acetate COA-transferase alpha subunit; structural	97.44
3cdk_A	241	Succinyl-COA:3-ketoacid-coenzyme A transferase sub	97.28
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	97.02
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	96.97
1poi_A	317	Glutaconate coenzyme A-transferase; COA, glutamate	96.42
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	96.17
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	96.15
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	96.02
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	95.96
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	95.85
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	95.79
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	95.72
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	95.72
3efb_A	266	Probable SOR-operon regulator; alpha-beta-alpha sa	95.43
3nze_A	267	Putative transcriptional regulator, sugar-binding;	95.41
3kv1_A	267	Transcriptional repressor; alpha-beta structure, s	95.21
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	95.08
1w2w_B	191	5-methylthioribose-1-phosphate isomerase; EIF2B, m	94.79
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	94.79
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	94.47
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	94.46
2gnp_A	266	Transcriptional regulator; structural genomics, MC	94.33
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	94.11
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	93.81
2okg_A	255	Central glycolytic gene regulator; alpha/beta/alph	93.72
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	93.64
2r5f_A	264	Transcriptional regulator, putative; transcription	91.42
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	90.06
1stz_A	338	Heat-inducible transcription repressor HRCA homol;	87.43
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	85.97
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	85.34
2jsx_A	95	Protein NAPD; TAT, proofreading, cytoplasm, chaper	81.06

>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}

Probab=100.00  E-value=1.9e-68  Score=470.18  Aligned_cols=222  Identities=44%  Similarity=0.663  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEE
Q 024953           31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLA  110 (260)
Q Consensus        31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~a  110 (260)
                      +++|++||++|++||++||+||||||||+.+++++|+++.+++.+ ++++||||.+++.++.+.|++++.+++.+++|+|
T Consensus         2 ~~~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~-~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a   80 (225)
T 3l7o_A            2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT   80 (225)
T ss_dssp             CHHHHHHHHHHHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCC-CEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence            478999999999999999999999999999999999987554444 7999999999999999999999999888899999


Q ss_pred             EEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCCCc
Q 024953          111 IDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCV  190 (260)
Q Consensus       111 f~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~  190 (260)
                      |||||+||++++++|++++|++|||+++++|+++|+|+|+|||+++||  +|||||||+|++|.+|.++|+++    |+.
T Consensus        81 ~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg--~~plPvEV~p~a~~~v~~~l~~l----G~~  154 (225)
T 3l7o_A           81 VDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG--AFRLPVEVVQYGAERLFREFEKK----GYK  154 (225)
T ss_dssp             EECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----TCC
T ss_pred             EEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcC--CCCEEEEEehhHHHHHHHHHHHc----CCc
Confidence            999999999999999999999999999999999999999999999999  49999999999999999999996    999


Q ss_pred             eEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953          191 AKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK  260 (260)
Q Consensus       191 ~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~  260 (260)
                      ++||+++++||+|||||||+||+|.. |.||.+|+++|++||||||||||.++++.+++|+++|++++++
T Consensus       155 ~~lR~~~~~p~vTDnGn~IlD~~f~~-i~~p~~l~~~l~~i~GVVe~GlF~~~a~~v~v~~~~g~~~~~~  223 (225)
T 3l7o_A          155 PSFREYDGVRFVTDMKNFIIDLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRILEA  223 (225)
T ss_dssp             EEECEETTEECCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCSEEEEET---TEEEEC
T ss_pred             eEEEEcCCCcEEcCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeeeccCCCEEEEEcCCceEEecc
Confidence            99999888999999999999999985 9999999999999999999999999999999999999888764

>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}

Probab=100.00  E-value=6.1e-68  Score=473.35  Aligned_cols=237  Identities=38%  Similarity=0.642  Sum_probs=213.2

Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCc
Q 024953           18 SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIP   97 (260)
Q Consensus        18 ~~~~~~~~~m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~   97 (260)
                      ....++|+.|. ++++|++||++|+++|++||+||||||||+.+++++|+++.++ ++ ++++||||..++.++.+.|++
T Consensus        13 ~~~~~~~~~m~-~~e~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~-gl-~ItvVttS~~ta~~l~~~GI~   89 (255)
T 3hhe_A           13 EAQTQGPGSMN-VQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVAN-GL-RVTCVATSQYSEQLCHKFGVP   89 (255)
T ss_dssp             ----------C-HHHHHHHHHHHHHTTCCTTEEEEECCSHHHHHHHHHHHHHHHT-TC-CEEEEESSHHHHHHHHHTTCC
T ss_pred             eecCCCCCCCC-HHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhcc-CC-cEEEEcCCHHHHHHHHHcCCc
Confidence            34457788876 7889999999999999999999999999999999999987543 35 799999999999999999999


Q ss_pred             EEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHH
Q 024953           98 LSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTA  177 (260)
Q Consensus        98 v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~  177 (260)
                      ++.+++..++|+||||||+||++++++|++++|++|||+++++|+++|+|+|+|||+++||  +|||||||+|++|.+|.
T Consensus        90 l~~l~~~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG--~~plPVEViP~a~~~v~  167 (255)
T 3hhe_A           90 ISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG--AFALPIEVNPFGIHATR  167 (255)
T ss_dssp             BCCTTTCCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHH
T ss_pred             EEecccccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC--CCCeEEEEchhHHHHHH
Confidence            9999887799999999999999999999999999999999999999999999999999999  49999999999999999


Q ss_pred             HHHHHhhhh--CCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCC-C
Q 024953          178 KRLQDLFED--CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASEL-G  254 (260)
Q Consensus       178 ~~l~~~~~~--~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~-g  254 (260)
                      ++|+++|..  +|+++++|+++++||||||||||+||+|.+ |.||.+|+++|++||||||||||.++++.||+|+++ |
T Consensus       168 ~~l~~~~~~~glgg~~~lR~~~~gp~vTDnGN~IlD~~f~~-i~dp~~l~~~l~~i~GVVe~GLF~~~a~~vivg~~~~G  246 (255)
T 3hhe_A          168 IAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVAMADSQ  246 (255)
T ss_dssp             HHHHHHHHHHTCCSCEEECEETTEECCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEECTTSC
T ss_pred             HHHHhhhccccCCCeEEEeeCCCCcEEcCCCCEEEEeeCCC-cCCHHHHHHHHhcCCCEeeecccccCCCEEEEEcCCCC
Confidence            999996543  267999999999999999999999999996 999999999999999999999999999999999999 9


Q ss_pred             eEEecC
Q 024953          255 VTIRNK  260 (260)
Q Consensus       255 ~~~~~~  260 (260)
                      ++++++
T Consensus       247 v~~~~~  252 (255)
T 3hhe_A          247 IKVLEP  252 (255)
T ss_dssp             EEEECG
T ss_pred             eEEEec
Confidence            998753

>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}

Probab=100.00  E-value=2.4e-66  Score=456.07  Aligned_cols=223  Identities=45%  Similarity=0.681  Sum_probs=213.0

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD  108 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D  108 (260)
                      +|++.|+++|++|++||++||+||||||||+.+++++|+++.+++.+ +++.|++|.+++.+++++|+++..+++..++|
T Consensus         3 ~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD   81 (228)
T 4gmk_A            3 NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHID   81 (228)
T ss_dssp             HHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCccc
Confidence            58899999999999999999999999999999999999988765566 79999999999999999999999999888999


Q ss_pred             EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCC
Q 024953          109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG  188 (260)
Q Consensus       109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g  188 (260)
                      +||||||+||++++++||+|+|++|||+++++|+++|+++|+||++++||  +|||||||+|++|.+|.++|.++    |
T Consensus        82 ~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG--~fplPVEVip~a~~~v~~~l~~l----G  155 (228)
T 4gmk_A           82 LTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLG--QFPLPVEVIPYGSGTVFKRFEEK----G  155 (228)
T ss_dssp             EEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----T
T ss_pred             eEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccC--CeeEEEEEehhhHHHHHHHHHHc----C
Confidence            99999999999999999999999999999999999999999999999999  49999999999999999999996    9


Q ss_pred             CceEEeecCC-CceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEec
Q 024953          189 CVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRN  259 (260)
Q Consensus       189 ~~~~~R~~~~-~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~  259 (260)
                      +.+++|++++ +||+|||||||+||+|.+ |.||.+|+++|++||||||||||.++++.+++|++||+++++
T Consensus       156 ~~~~~R~~~~g~~~vTDnGN~IlD~~~~~-i~dp~~l~~~L~~i~GVVe~GLF~~~a~~vivg~~dGv~~l~  226 (228)
T 4gmk_A          156 LNPEFRKNEDGSLLHTDSDNYIIDLHLGK-IENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEVLE  226 (228)
T ss_dssp             CCEEECBCTTSSBCCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEE
T ss_pred             CceeecccCCCCeEEecCCCEEEEecCCC-CCCHHHHHHHHhCCCCEEeeeeecCCCCEEEEEeCCCcEEEe
Confidence            9999999754 679999999999999986 999999999999999999999999999999999999999986

>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*

Probab=100.00  E-value=2.7e-66  Score=459.42  Aligned_cols=222  Identities=37%  Similarity=0.576  Sum_probs=208.5

Q ss_pred             CCCChHHHHHHHHHHHHhcCcC----CCEEEECCChhHHHHHHHHHhHHhcCCCCCEE-EECCcHHHHHHHHhCCCcEEE
Q 024953           26 VILTQDELKKIAAYKAVEFVES----GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIV-GIPTSKKTHEQAVSLGIPLSD  100 (260)
Q Consensus        26 ~m~~~~~~K~~IA~~Aa~lI~d----g~~I~LgsGST~~~la~~L~~~~~~~~l~~it-vVTnSl~~a~~l~~~gi~v~~  100 (260)
                      +|++++++|+++|++|+++|++    ||+||||||||+.+++++|+++.+     +++ +||||..++.++.+.|+++..
T Consensus         7 ~~m~~~~~K~~aA~~A~~~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~~-----~i~~~V~tS~~t~~~~~~~Gi~l~~   81 (239)
T 3uw1_A            7 LLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKD-----RYRGAVSSSVATTERLKSHGIRVFD   81 (239)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHSCTTCEEEECCSHHHHHHHHHHHTTGG-----GSCEEEESSHHHHHHHHHTTCCBCC
T ss_pred             ccCCHHHHHHHHHHHHHHHhhccCcCCCEEEECccHHHHHHHHHHHhhhc-----cceEEeCCcHHHHHHHHHcCCcEEe
Confidence            4567889999999999999999    999999999999999999987632     577 799999999999999999999


Q ss_pred             cCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHH
Q 024953          101 LDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRL  180 (260)
Q Consensus       101 l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l  180 (260)
                      +++.+++|+||||||+||++++++||+|+|++|||+++++|+++|+|+|+||++++||  +|||||||+|++|.+|.++|
T Consensus        82 l~~~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg--~~plPVEViP~a~~~v~~~l  159 (239)
T 3uw1_A           82 LNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRL  159 (239)
T ss_dssp             GGGCSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHH
T ss_pred             cccccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcC--CCCeEEEEChhHHHHHHHHH
Confidence            9888899999999999999999999999999999999999999999999999999999  49999999999999999999


Q ss_pred             HHhhhhCCCceEEeecCCC-ceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccc-cccEEEEEcCCCeEEe
Q 024953          181 QDLFEDCGCVAKLRTTGEQ-PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLD-MATTVIVASELGVTIR  258 (260)
Q Consensus       181 ~~~~~~~g~~~~~R~~~~~-p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~-~~~~viv~~~~g~~~~  258 (260)
                      +++    |+.++||+++++ ||+|||||||+||+|.. |.||.+|+++|++||||||||||.+ ++|.+++|+++|++++
T Consensus       160 ~~l----G~~~~lR~~~~g~p~vTDnGN~IlD~~~~~-i~dp~~l~~~l~~i~GVVe~GlF~~~~a~~vivg~~~Gv~~~  234 (239)
T 3uw1_A          160 AAL----GGVPVLRVKQDGTPYVTDNGNEILDVKGLR-IDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGVETL  234 (239)
T ss_dssp             HHT----TCEEEECBCTTSSBCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTEEEEE
T ss_pred             HHc----CCCeEEeecCCCCceEccCCCEEEEecCCC-CCCHHHHHHHHcCCCCEEeecCCcCCCCCEEEEEcCCceEEE
Confidence            996    999999997554 99999999999999985 9999999999999999999999998 5899999999998876


Q ss_pred             c
Q 024953          259 N  259 (260)
Q Consensus       259 ~  259 (260)
                      +
T Consensus       235 ~  235 (239)
T 3uw1_A          235 R  235 (239)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*

Probab=100.00  E-value=1e-65  Score=454.73  Aligned_cols=226  Identities=42%  Similarity=0.697  Sum_probs=208.3

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD  108 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D  108 (260)
                      ++.++|++||++|+++|+|||+||||+|||+.+++++|+++.++..++++|+||||+.++.++.+.+++++.++..+++|
T Consensus         2 ~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~D   81 (229)
T 1lk5_A            2 NVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAID   81 (229)
T ss_dssp             CHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEE
T ss_pred             ChHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccCC
Confidence            46789999999999999999999999999999999999865332223369999999999999988899999887656999


Q ss_pred             EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhCC
Q 024953          109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG  188 (260)
Q Consensus       109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~g  188 (260)
                      +||+||||||++++++++++++++|||+++++|+++|+|+|||||+++||. +|||||||+|++|.++.++|+++    |
T Consensus        82 ~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~-~~~lPvEV~p~~~~~v~~~l~~l----g  156 (229)
T 1lk5_A           82 VAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQ-KMPVPIEVIPQAWKAIIEELSIF----N  156 (229)
T ss_dssp             EEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTS-SCCEEEEECGGGHHHHHHHGGGG----T
T ss_pred             EEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCC-CCCEEEEECcchHHHHHHHHHHc----C
Confidence            999999999999889999999999999998899999999999999999996 49999999999999999999997    8


Q ss_pred             CceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953          189 CVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK  260 (260)
Q Consensus       189 ~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~  260 (260)
                      +.++||++  +++||+|||||||+||+|.+ |.||.+++++|++||||||||||.++++.+++|+++|++++++
T Consensus       157 ~~~~~R~~~~~~~~~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~~~  229 (229)
T 1lk5_A          157 AKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER  229 (229)
T ss_dssp             CEEEECBCSSSSSBCCCTTSCEEEEEECSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEEC
T ss_pred             CCeEEeeccCCCCcEEcCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCcceecccccCCCEEEEEeCCCeEEeCC
Confidence            99999985  67899999999999999985 9999999999999999999999999999999999999888763

>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}

Probab=100.00  E-value=3.2e-65  Score=454.66  Aligned_cols=229  Identities=42%  Similarity=0.713  Sum_probs=209.4

Q ss_pred             hHHHHHHHHHHHHh-cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcccc
Q 024953           30 QDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD  108 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~-lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D  108 (260)
                      +++.|++||++|++ +|+|||+||||+|||+.+++++|+++.+++.++++++||||+.++.+|.+.|++++.++...++|
T Consensus         9 ~~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD   88 (244)
T 2f8m_A            9 MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNID   88 (244)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCCBS
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecccCcCC
Confidence            57899999999999 99999999999999999999999866433334469999999999999988899999886545899


Q ss_pred             EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc-cCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953          109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV-PHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC  187 (260)
Q Consensus       109 ~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~-~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~  187 (260)
                      +||+||||||+++++++++++|++|||+++++|+++|+|+|+|||+ ++||.. |||||||+|++|.+|.++|+++|...
T Consensus        89 ~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~-~plPvEV~p~a~~~v~~~l~~l~~~~  167 (244)
T 2f8m_A           89 ITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMT-GAVPIEILTFGYEKIIENLLKIYTLK  167 (244)
T ss_dssp             EEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCS-SCEEEEECSTTHHHHHHHHTTSTTTT
T ss_pred             EEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCCC-CcEEEEEcccHHHHHHHHHHHHhhcc
Confidence            9999999999998899999999999998888999999999999999 999974 99999999999999999999986555


Q ss_pred             CCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEEec
Q 024953          188 GCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTIRN  259 (260)
Q Consensus       188 g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~~~  259 (260)
                      |+.++||+++++||||||||||+||+|.++|.||.+++++|++||||||||||.++++.+|+|+++| +.+.+
T Consensus       168 G~~~~lR~~~~~p~vTDnGn~IlD~~f~~~i~dp~~l~~~l~~i~GVVe~GlF~~~a~~vi~~~~~G~v~~~~  240 (244)
T 2f8m_A          168 GCTYKIRKRNGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLN  240 (244)
T ss_dssp             TCEEEECEETTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEESEECSCCSEEEEECTTSCEEEEE
T ss_pred             CCceEEEEcCCCcEEcCCCCEEEEecCCCCCCCHHHHHHHHhcCCCcceeeeEecCCCEEEEEeCCCeEEeec
Confidence            8999999877889999999999999998669999999999999999999999999999999999999 55443

>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*

Probab=100.00  E-value=1.6e-64  Score=446.65  Aligned_cols=223  Identities=46%  Similarity=0.717  Sum_probs=204.9

Q ss_pred             CCChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCcc
Q 024953           27 ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPV  106 (260)
Q Consensus        27 m~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~  106 (260)
                      |+.+.++|++||++|+++|+|||+||||+|||+.+++++|+++.+++.++++++||||+.++.+|.+.|++++.+.+ ++
T Consensus         2 ~~~~~~~K~~IA~~Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~-~~   80 (227)
T 1uj6_A            2 ERPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EG   80 (227)
T ss_dssp             -CTTHHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TC
T ss_pred             CCchHHHHHHHHHHHHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEEcCC-Cc
Confidence            45578899999999999999999999999999999999998654333332399999999999999989999999966 89


Q ss_pred             ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953          107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED  186 (260)
Q Consensus       107 ~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~  186 (260)
                      +|+||+||||||.++.++++++++++||||++++|+++|+|+|||||++++|  +|||||||+|++|.++.++|+++   
T Consensus        81 ~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~a~~~ivlaD~sK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~~---  155 (227)
T 1uj6_A           81 VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIADL---  155 (227)
T ss_dssp             EEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHTT---
T ss_pred             CCEEEECCCccCccccEECCHHHHHHHHHHHHhccCCEEEEEEcchhccccC--CCceeEEECcCHHHHHHHHHHhh---
Confidence            9999999999999888899999999999999887999999999999999999  59999999999999999999997   


Q ss_pred             CCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCC-eEE
Q 024953          187 CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG-VTI  257 (260)
Q Consensus       187 ~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g-~~~  257 (260)
                       |+.++||+.+++||+|||||||+||+|.+ |.||.+++++|++||||||||||.++++.+++|+++| +++
T Consensus       156 -g~~~~~R~~~~~~~vTdnGn~ilD~~~~~-i~~~~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~  225 (227)
T 1uj6_A          156 -GGEPELRMDGDEFYFTDGGHLIADCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEEL  225 (227)
T ss_dssp             -TCCEEECEETTEECCCTTSCEEEEECCCS-CSCHHHHHHHHHTSTTEEEESEECSCCSEEEEEETTEEEEE
T ss_pred             -CCCeEEEecCCCCEEcCCCCEEEEeeCCC-CCCHHHHHHHHhCCCCcceeccEecCCCEEEEEeCCCeEEe
Confidence             89999998667899999999999999985 9999999999999999999999999999999999999 544

>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-65  Score=456.99  Aligned_cols=238  Identities=32%  Similarity=0.545  Sum_probs=202.2

Q ss_pred             cCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCc--CCCEEEECCChhHHHHHHHHHhHHhcCCCC----CEEEECCcHHH
Q 024953           15 TGLSPLSSPPPVILTQDELKKIAAYKAVE-FVE--SGMVLGLGTGSTAKHAVDRIGELLRQGKLT----NIVGIPTSKKT   87 (260)
Q Consensus        15 ~~~~~~~~~~~~m~~~~~~K~~IA~~Aa~-lI~--dg~~I~LgsGST~~~la~~L~~~~~~~~l~----~itvVTnSl~~   87 (260)
                      +|+.+.|+-|+.++++.++|++||++|++ +|+  +||+||||+|||+.+++++|.++.+++.++    ++++||||+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~   82 (264)
T 1xtz_A            3 AGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQS   82 (264)
T ss_dssp             ----------------CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHH
T ss_pred             CCCCccCCCcccCCCHHHHHHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHH
Confidence            67888899999999889999999999999 999  999999999999999999998653222111    48999999999


Q ss_pred             HHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcc-cCCCCCCc--cc
Q 024953           88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV-PHLGGSGL--AM  164 (260)
Q Consensus        88 a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~-~~lg~~~~--~l  164 (260)
                      +.+|.+.|++++.++..+++|+||+||||||+++++++++++|++|||+++++|+++|+|+|+|||+ ++||.. |  ||
T Consensus        83 a~~l~~~gi~v~~l~~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~-~~~pl  161 (264)
T 1xtz_A           83 RNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKN-WRQGV  161 (264)
T ss_dssp             HHHHHHTTCEECCTTTCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSS-CCSCE
T ss_pred             HHHHHHCCCeEEEehhcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccccccc-CCCCE
Confidence            9999988999999876679999999999999998899999999999999988999999999999999 899963 8  99


Q ss_pred             cEEEecCcHHHHHHHHHHhhhhCCC-ceEEeec---CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccc
Q 024953          165 PVEVVPYCWKFTAKRLQDLFEDCGC-VAKLRTT---GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF  240 (260)
Q Consensus       165 PvEV~p~~~~~v~~~l~~~~~~~g~-~~~~R~~---~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF  240 (260)
                      ||||+|++|.+|.++|++.   +|+ +++||++   +++||||||||||+||+|.. |.||.+|+++|++||||||||||
T Consensus       162 PVEV~p~a~~~v~~~l~~~---~g~~~~~lR~~~~~~~~p~vTDnGN~IlD~~f~~-i~dp~~l~~~l~~i~GVVe~GlF  237 (264)
T 1xtz_A          162 PIEIVPSSYVRVKNDLLEQ---LHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGE-ISDPRKLHREIKLLVGVVETGLF  237 (264)
T ss_dssp             EEEECGGGHHHHHHHHHHT---SCCSEEEECEETTTEEEECCCTTSCEEEEEECSS-BSCHHHHHHHHHTSTTEEEESEE
T ss_pred             eEEEChhHHHHHHHHHHHH---cCCCCceEeecccCCCCCEEcCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCccccceE
Confidence            9999999999999999443   377 9999985   46899999999999999996 99999999999999999999999


Q ss_pred             cccccEEEEEcCCCeEE
Q 024953          241 LDMATTVIVASELGVTI  257 (260)
Q Consensus       241 ~~~~~~viv~~~~g~~~  257 (260)
                      .++++.+|+|+++|+.+
T Consensus       238 ~~~a~~vi~~~~~G~~~  254 (264)
T 1xtz_A          238 IDNASKAYFGNSDGSVE  254 (264)
T ss_dssp             CSCCSEEEEECTTSCEE
T ss_pred             ecCCCEEEEEeCCceEE
Confidence            99999999999999443

>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.9e-64  Score=441.84  Aligned_cols=223  Identities=41%  Similarity=0.692  Sum_probs=208.1

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV  107 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~  107 (260)
                      |++++.|+++|++|++||++||+||||||||+.+++++|+++.+++.+ +++.|++|.+++.++.+.|+++..+++. .+
T Consensus         1 M~~d~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l-~i~~v~tS~~t~~~a~~~gi~l~~l~~~-~i   78 (226)
T 3ixq_A            1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEY-DV   78 (226)
T ss_dssp             -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTC-CC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCC-eeEeecccHHHHHHHHhcCCCccccccc-cc
Confidence            457889999999999999999999999999999999999987765566 6999999999999999999999999875 69


Q ss_pred             cEEEEccCccc-CCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953          108 DLAIDGADEVD-PFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED  186 (260)
Q Consensus       108 D~af~GadgId-~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~  186 (260)
                      |+||||||+|| ++++++||+|+|++|||+++++|+++|+++|+||++++||.+ |||||||+|++|.++.++|.++   
T Consensus        79 Dl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~~-fplPVEVip~a~~~v~~~l~~l---  154 (226)
T 3ixq_A           79 DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEK-FPIPVEVIPSAYRVVIRALSEM---  154 (226)
T ss_dssp             SEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSS-SCEEEEECGGGHHHHHHHHHHT---
T ss_pred             cEEEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEeccccchhhcCCC-CCccEEEechHHHHHHHHHHHc---
Confidence            99999999998 478999999999999999999999999999999999999974 9999999999999999999996   


Q ss_pred             CCCceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccccccccEEEEEcCCCeEEecC
Q 024953          187 CGCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK  260 (260)
Q Consensus       187 ~g~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~~~~viv~~~~g~~~~~~  260 (260)
                       |+.+++|++  +++||+|||||||+||+|+  |.||.+++++|++||||||||||.++ +.+++|+++|+++++|
T Consensus       155 -G~~~~~R~~~~~~gp~vTDnGN~IlD~~~~--i~dp~~l~~~L~~ipGVVe~GlF~~~-~~vivg~~~Gv~~i~k  226 (226)
T 3ixq_A          155 -GGEAVIRLGDRKRGPVITDNGNMIIDVFMN--IDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGVKTLKK  226 (226)
T ss_dssp             -TCEEEECBCSSSSSBCBCTTSCEEEEEECC--CSCHHHHHHHHHTSTTEEEESEECCC-SEEEEEETTEEEEECC
T ss_pred             -CCCceEEeeccCCCceEecCCCEEEEecCC--CCCHHHHHHHHhCCCCEEeeCcccCC-CEEEEEeCCeEEEEeC
Confidence             999999986  5789999999999999873  89999999999999999999999985 8899999999999986

>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}

Probab=100.00  E-value=6.8e-64  Score=440.97  Aligned_cols=215  Identities=36%  Similarity=0.558  Sum_probs=202.9

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcHHHHHHHHhCCCcEEEcCCCcc
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPV  106 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl~~a~~l~~~gi~v~~l~~~~~  106 (260)
                      ++++++|++||++|+++|++||+||||+|||+.+++++|+++.     +++++ ||||.+++.++.+.|++++.+++.++
T Consensus         7 ~~~~~~K~~iA~~A~~~V~~g~~IglgsGST~~~~i~~L~~~~-----~~itv~VtnS~~~a~~l~~~gi~l~~l~~~~~   81 (224)
T 3kwm_A            7 NNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYR-----DKIKTVVSSSEDSTRKLKALGFDVVDLNYAGE   81 (224)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHHGGGCT-----TTEEEEEESCHHHHHHHHHTTCCBCCHHHHCS
T ss_pred             cChHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhc-----CceEEEECCcHHHHHHHHHcCCeEEecCcccc
Confidence            4578999999999999999999999999999999999998752     27998 99999999999999999999987789


Q ss_pred             ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhh
Q 024953          107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED  186 (260)
Q Consensus       107 ~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~  186 (260)
                      +|+||+|||+||++++++||++++++|||+++++|+++|+|+|+|||+++||  +||+||||+|++|.++.++|+++   
T Consensus        82 iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg--~~plPvEV~p~a~~~v~~~l~~l---  156 (224)
T 3kwm_A           82 IDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG--NFPLPIEVIPMARSYIARQIVKL---  156 (224)
T ss_dssp             EEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC--SSCEEEEECGGGHHHHHHHHHHT---
T ss_pred             ccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC--CCCeEEEEChHHHHHHHHHHHHc---
Confidence            9999999999999999999999999999999999999999999999999999  49999999999999999999996   


Q ss_pred             CCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccccc-ccEEEEEcCCCeEEe
Q 024953          187 CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDM-ATTVIVASELGVTIR  258 (260)
Q Consensus       187 ~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~~~-~~~viv~~~~g~~~~  258 (260)
                       |+.++||+    +|+|||||||+||+|.+ |.||.+++++|++||||||||||.++ ++.+++|+++|++++
T Consensus       157 -g~~~~lR~----~~vTDnGn~IlD~~~~~-i~dp~~l~~~l~~i~GVVe~GlF~~~~~~~vi~g~~~g~~~~  223 (224)
T 3kwm_A          157 -GGQPVYRE----QTITDNGNVILDVYNLK-IDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVV  223 (224)
T ss_dssp             -TCEEEECT----TCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEECTTSCEEE
T ss_pred             -CCCeEEec----CcCccCCCEEEEcCCCC-CCCHHHHHHHHcCCCCEeeeCcccCCcCCEEEEEcCCceEEe
Confidence             99999996    59999999999999995 99999999999999999999999985 799999999998875

>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1

Probab=100.00  E-value=4e-63  Score=435.44  Aligned_cols=216  Identities=35%  Similarity=0.559  Sum_probs=201.5

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPVV  107 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl~~a~~l~~~gi~v~~l~~~~~~  107 (260)
                      ++.++|++||++|+++|+|||+||||+|||+.+++++|+++.  +   ++|+ ||||+.++.++.+.+++++.++..+++
T Consensus         2 ~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~la~~L~~~~--~---~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~   76 (219)
T 1m0s_A            2 NQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIK--D---KIQGAVAASKESEELLRKQGIEVFNANDVSSL   76 (219)
T ss_dssp             CHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTTG--G---GSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhccC--C---CEEEEECChHHHHHHHHhCCCeEEEeCccccC
Confidence            567899999999999999999999999999999999998641  1   5899 999999999998889999988765699


Q ss_pred             cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953          108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC  187 (260)
Q Consensus       108 D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~  187 (260)
                      |+||+||||+|++++++++++++++|||+++++|+++|+|+|||||+++||. +|||||||+|++|.++.++|+++    
T Consensus        77 D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~-~~~lPvEV~p~~~~~v~~~l~~l----  151 (219)
T 1m0s_A           77 DIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGS-TFPLPVEVIPMARSQVGRKLAAL----  151 (219)
T ss_dssp             EEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTS-SSCEEEEECGGGHHHHHHHHHHT----
T ss_pred             CEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCC-CCCEEEEECcchHHHHHHHHHHc----
Confidence            9999999999999889999999999999998889999999999999999996 49999999999999999999997    


Q ss_pred             CCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc-ccccEEEEEcCCCeEEec
Q 024953          188 GCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL-DMATTVIVASELGVTIRN  259 (260)
Q Consensus       188 g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~-~~~~~viv~~~~g~~~~~  259 (260)
                      |+.++||+   | |+|||||||+||+|.+ |.||.+++++|++||||||||||. ++++.+++|+++|++++.
T Consensus       152 g~~~~~R~---g-~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~a~~~~~~~~~g~~~~~  219 (219)
T 1m0s_A          152 GGSPEYRE---G-VVTDNGNVILDVHNFS-ILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKVID  219 (219)
T ss_dssp             TCEEEECT---T-CCCTTSCEEEEEESCC-CSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTEEEEEC
T ss_pred             CCCcEeeC---c-eEcCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeccEecCCCCEEEEEeCCCeEEcC
Confidence            89999995   4 9999999999999985 999999999999999999999999 999999999999988763

>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*

Probab=100.00  E-value=1.6e-63  Score=437.97  Aligned_cols=216  Identities=38%  Similarity=0.600  Sum_probs=158.2

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEE-ECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPVV  107 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itv-VTnSl~~a~~l~~~gi~v~~l~~~~~~  107 (260)
                      ++.++|++||++|+++|+|||+||||+|||+.+++++|+++.     .++|+ ||||+.++.++.+.+++++.++..+++
T Consensus         2 ~~~~~K~~IA~~Aa~lI~dg~~I~LdsGST~~~la~~L~~~~-----~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~   76 (219)
T 1o8b_A            2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMK-----GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSL   76 (219)
T ss_dssp             ---------------------CEEECCSCC--------------------CCEEESCCC------------CCGGGCSCE
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhccC-----CCEEEEECCcHHHHHHHHhCCCeEEEeCccCcC
Confidence            456789999999999999999999999999999999997641     15899 999999999998889999988765699


Q ss_pred             cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHHHHHHhhhhC
Q 024953          108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC  187 (260)
Q Consensus       108 D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~~l~~~~~~~  187 (260)
                      |+||+||||+|++++++++++++++|||+++++|+++|+|+|||||+++||  +|||||||+|++|.++.++|+++    
T Consensus        77 D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~l----  150 (219)
T 1o8b_A           77 GIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG--KFPLPVEVIPMARSAVARQLVKL----  150 (219)
T ss_dssp             EEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHHHHT----
T ss_pred             CEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC--CCcEEEEEChhHHHHHHHHHHHc----
Confidence            999999999999988899999999999999888999999999999999999  59999999999999999999997    


Q ss_pred             CCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc-ccccEEEEEcCCCeEEecC
Q 024953          188 GCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL-DMATTVIVASELGVTIRNK  260 (260)
Q Consensus       188 g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~-~~~~~viv~~~~g~~~~~~  260 (260)
                      |+.++||+   | |+|||||||+||+|.+ |.||.+++++|++||||||||||. ++++.+++|+++|+++++|
T Consensus       151 g~~~~~R~---g-~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~a~~~~~~~~~g~~~~~~  219 (219)
T 1o8b_A          151 GGRPEYRQ---G-VVTDNGNVILDVHGME-ILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK  219 (219)
T ss_dssp             TCEEEECT---T-CCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEEETTEEEEEC-
T ss_pred             CCCcEeeC---c-eEeCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCcceeeeEecCCCCEEEEEeCCCeEEecC
Confidence            89999995   4 9999999999999985 999999999999999999999999 9999999999999998875

>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5

Probab=99.32  E-value=1.1e-11  Score=111.81  Aligned_cols=133  Identities=19%  Similarity=0.127  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEEC-C------cHHHHHHHHhCCCcEEEcC
Q 024953           31 DELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIP-T------SKKTHEQAVSLGIPLSDLD  102 (260)
Q Consensus        31 ~~~K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvVT-n------Sl~~a~~l~~~gi~v~~l~  102 (260)
                      .+.|++||+.|+++|++|++|+ ++.|+|+..+++.+.+..     ++++|++ +      +..++.+|.+.|++++.+.
T Consensus        93 ~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~-----~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli~  167 (276)
T 1vb5_A           93 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK-----KRFKVILTESSPDYEGLHLARELEFSGIEFEVIT  167 (276)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTT-----CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcC-----CeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEEc
Confidence            4679999999999999999999 999999999999986531     2688877 6      6678888988999988654


Q ss_pred             CC------ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecC
Q 024953          103 SY------PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPY  171 (260)
Q Consensus       103 ~~------~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~  171 (260)
                      ..      .++|++|+|||+|..+|++..--|.+.+...+ .+.+..+|+++|++||.....  +..+|+|-.+.
T Consensus       168 dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A-~~~~vp~~V~a~~~K~~~~~~--~~~i~iE~r~~  239 (276)
T 1vb5_A          168 DAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALAC-HENAIPFYVAAETYKFHPTLK--SGDVMLMERDL  239 (276)
T ss_dssp             GGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHH-HHTTCCEEEECCGGGBCSSCC--GGGCCCCBCCC
T ss_pred             HHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHH-HHcCCCEEEeccccccCcccC--ccccccccCCc
Confidence            21      27999999999999999876557777777554 456899999999999976521  35678777654

>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}

Probab=98.13  E-value=1.5e-05  Score=72.98  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhcCcCCCEEE-ECCChhHHHHHHHHHhHHhcCCCCCEEEE-C-C-----cHHHHHHHHhCCCcEEEcCCC-
Q 024953           34 KKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGI-P-T-----SKKTHEQAVSLGIPLSDLDSY-  104 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~-LgsGST~~~la~~L~~~~~~~~l~~itvV-T-n-----Sl~~a~~l~~~gi~v~~l~~~-  104 (260)
                      +++||+.++++|++|++|. .+.++|+..+++...+.   +  ++++|+ + +     ....+..|.+.|+++..+... 
T Consensus       108 ~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Dsa  182 (315)
T 3ecs_A          108 RNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAA---K--KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAA  182 (315)
T ss_dssp             HHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTT---T--CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGG
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHc---C--CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehhH
Confidence            6789999999999999987 48888888888766543   1  134443 2 2     124677788899998765311 


Q ss_pred             -----ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEe
Q 024953          105 -----PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV  169 (260)
Q Consensus       105 -----~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~  169 (260)
                           .++|++|+|||.|..+|.+..--|...+- .+..+....+|+++.+.||....-.....+|+|..
T Consensus       183 ~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iA-l~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~  251 (315)
T 3ecs_A          183 VGYIMEKADLVIVGAEGVVENGGIINKIGTNQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFK  251 (315)
T ss_dssp             HHHHGGGCSEEEEECSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGT
T ss_pred             HHHHHHhCCEEEECceEEecCCCeeehhhhHHHH-HHHHHhCCCEEEEeccccccccCCCCcccCCcccc
Confidence                 17999999999999998876554544442 22334567899999999997542111234565543

>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}

Probab=98.07  E-value=2.5e-06  Score=77.44  Aligned_cols=50  Identities=14%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhc----CcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECC
Q 024953           31 DELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT   83 (260)
Q Consensus        31 ~~~K~~IA~~Aa~l----I~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTn   83 (260)
                      .++|++||++|+++    |++|++|||++|||+..++++|....   ..+++++|++
T Consensus        89 ~~~k~~ia~~AA~~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~---~~~~~~vv~l  142 (315)
T 2w48_A           89 EEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS---QSRQVICVPI  142 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCS---SCCCCEEEES
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhhcccc---CCCCcEEEEc
Confidence            34699999999997    99999999999999999999996421   1137899985

>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*

Probab=98.02  E-value=3.8e-05  Score=70.90  Aligned_cols=131  Identities=20%  Similarity=0.177  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhcCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEE-C-Cc-----HHHHHHHHhCCCcEEEcCC-
Q 024953           33 LKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGI-P-TS-----KKTHEQAVSLGIPLSDLDS-  103 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvV-T-nS-----l~~a~~l~~~gi~v~~l~~-  103 (260)
                      ..++|++.++++|++|++|.- +.++|++.+++...+.   +.  +++|+ + +-     ..++.+|.+.|+++..+-. 
T Consensus       127 ~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~---gk--~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Ds  201 (338)
T 3a11_A          127 ALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQ---GK--DIKVIVTETRPKWQGKITAKELASYGIPVIYVVDS  201 (338)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHT---TC--CCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGG
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHC---CC--eEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehH
Confidence            456799999999999999884 7777998888877643   11  23332 2 22     2467888899999876521 


Q ss_pred             -----CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEec
Q 024953          104 -----YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP  170 (260)
Q Consensus       104 -----~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p  170 (260)
                           ..++|++|+|||.|-.+|.+..--|...+- -+..+....+|++|.++||....-. +..+|+|-.+
T Consensus       202 a~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~~-g~~i~iE~r~  271 (338)
T 3a11_A          202 AARHYMKMTDKVVMGADSITVNGAVINKIGTALIA-LTAKEHRVWTMIAAETYKFHPETML-GQLVEIEMRD  271 (338)
T ss_dssp             GTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCEEEEECCGGGBCSCCSS-SSCCCCCBCC
T ss_pred             HHHHHHHhCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEecccceecccCCC-CcccccccCC
Confidence                 137999999999999999876544444432 2223456789999999999765332 3568887654

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=97.99  E-value=2.3e-06  Score=78.74  Aligned_cols=88  Identities=9%  Similarity=0.064  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHHHHhc----CcC-CCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC-----------CcHHHHHHHH
Q 024953           29 TQDELKKIAAYKAVEF----VES-GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP-----------TSKKTHEQAV   92 (260)
Q Consensus        29 ~~~~~K~~IA~~Aa~l----I~d-g~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT-----------nSl~~a~~l~   92 (260)
                      +....|++||++|+++    |++ |++|||++|||+..++++|....  -..+++++||           ++..++..+.
T Consensus       119 ~~~~~k~~ia~~AA~~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la  196 (345)
T 2o0m_A          119 IQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLE--TEKRHNLFVPARGGIGEAVSVQANSISAVMA  196 (345)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC--CSSEEEEEEESBSCCCCCGGGSHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc--CCCCCcEEEEcCCcCCCCcccCHHHHHHHHH
Confidence            3334799999999996    999 99999999999999999996420  0012799999           6667766664


Q ss_pred             h-CCCcEEEc------C------------------CCccccEEEEccCccc
Q 024953           93 S-LGIPLSDL------D------------------SYPVVDLAIDGADEVD  118 (260)
Q Consensus        93 ~-~gi~v~~l------~------------------~~~~~D~af~GadgId  118 (260)
                      + .|.+...+      .                  ...++|++|+|+.+.+
T Consensus       197 ~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~~  247 (345)
T 2o0m_A          197 NKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRAL  247 (345)
T ss_dssp             HHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHH
T ss_pred             HHhCCceEEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCch
Confidence            3 24432211      0                  0137999999998774

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3

Probab=97.87  E-value=2.6e-05  Score=69.49  Aligned_cols=114  Identities=15%  Similarity=0.221  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH-----------HH-HHHhCCCcE---
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-----------HE-QAVSLGIPL---   98 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~-----------a~-~l~~~gi~v---   98 (260)
                      ++.||+.|+++|+||+++.+|.| .-..++.++.+..    .+++++.+.+-.+           .. .+.. +...   
T Consensus         8 ~e~Ia~~aA~~i~dG~~v~lGiG-iP~~va~~~~~~~----~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~~-~a~~~~~   81 (260)
T 1poi_B            8 KEMQAVTIAKQIKNGQVVTVGTG-LPLIGASVAKRVY----APDCHIIVESGLMDCSPVEVPRSVGDLRFMA-HCGCIWP   81 (260)
T ss_dssp             HHHHHHHHHTTCCTTCEEECCSS-HHHHHHHHHHHTT----CTTCEEEETTTEEEECCSSCCSSTTCHHHHT-SEEEECC
T ss_pred             HHHHHHHHHHhCCCCCEEEeCCC-HHHHHHHHHHHhc----CCCEEEEEeCceecCcccCcccCccCCCcEe-ehhhhcC
Confidence            67999999999999999999999 7777888876521    1256666533100           00 0000 1000   


Q ss_pred             ----EEc-----CCCccccEEEEccCcccCCCCcc--------------cCcchhHHHHHHHHHhcCcEEEEEeCC--Cc
Q 024953           99 ----SDL-----DSYPVVDLAIDGADEVDPFMNLV--------------KGRGGSLLREKMVEGACKKFVVIVDES--KL  153 (260)
Q Consensus        99 ----~~l-----~~~~~~D~af~GadgId~~~~~i--------------~~~~~a~~kekii~~~A~~~IlLaD~s--Kf  153 (260)
                          ..+     -+..++|++|+|+-+||..|+.-              +|.|++.-    +.+.|+++|++ +|+  ||
T Consensus        82 ~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D----~~~~A~~~iv~-~h~~rk~  156 (260)
T 1poi_B           82 NVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKRRF  156 (260)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTTTB
T ss_pred             HHHHhcccchhhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHH----HHhCCCEEEEE-ECCCCee
Confidence                011     12347899999999999877532              33344332    23568888888 887  78


Q ss_pred             ccCCC
Q 024953          154 VPHLG  158 (260)
Q Consensus       154 ~~~lg  158 (260)
                      ++++.
T Consensus       157 V~~v~  161 (260)
T 1poi_B          157 MNKID  161 (260)
T ss_dssp             CSSCS
T ss_pred             cccCc
Confidence            87654

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=97.80  E-value=8.1e-05  Score=70.82  Aligned_cols=51  Identities=12%  Similarity=0.160  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH
Q 024953           31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT   87 (260)
Q Consensus        31 ~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~   87 (260)
                      .+.+++||+.|+++|+||+++.+|.|++...++.+|.++      +++.+.|.-+..
T Consensus       193 ~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~te~~~~  243 (439)
T 3d3u_A          193 SDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGH------KDLGIHTEMFTD  243 (439)
T ss_dssp             CHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHTTTTC------CSBEEECSCBCH
T ss_pred             ChHHHHHHHHHHHhcCCCCEEEeccchHHHHHHHHHhhC------CCceEEEEEecc
Confidence            366899999999999999999999999999999999865      378888875543

>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5

Probab=97.77  E-value=0.00014  Score=67.40  Aligned_cols=132  Identities=18%  Similarity=0.192  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECC-Ch--------hHHHHHHHHHhHHhcCCCCCEEEECCc--H------HHHHHHHhC
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGT-GS--------TAKHAVDRIGELLRQGKLTNIVGIPTS--K------KTHEQAVSL   94 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~Lgs-GS--------T~~~la~~L~~~~~~~~l~~itvVTnS--l------~~a~~l~~~   94 (260)
                      +..++|++.++++|++|++|.-=+ +.        |+..+++...++   +  ++++|+...  .      .++.+|.+.
T Consensus       133 ~~~~~I~~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~  207 (347)
T 1t9k_A          133 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLTAWELMKD  207 (347)
T ss_dssp             HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---C--CeEEEEEeCCCCccccHHHHHHHHHhC
Confidence            346679999999999999988633 22        888888776543   1  145543321  1      257788889


Q ss_pred             CCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccE
Q 024953           95 GIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV  166 (260)
Q Consensus        95 gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPv  166 (260)
                      |+++..+-        +...+|++|+|||.|-.+|.+..--|...+- .+..+....+|+++.++||....-. +..+|+
T Consensus       208 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~i  285 (347)
T 1t9k_A          208 GIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRS-GEEIPI  285 (347)
T ss_dssp             TCEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSS-GGGSCC
T ss_pred             CCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeccccCC-cccccc
Confidence            99887653        1224999999999999999876444444432 2223456789999999999765332 256888


Q ss_pred             EEec
Q 024953          167 EVVP  170 (260)
Q Consensus       167 EV~p  170 (260)
                      |-.+
T Consensus       286 E~r~  289 (347)
T 1t9k_A          286 EERR  289 (347)
T ss_dssp             CBCC
T ss_pred             ccCC
Confidence            7654

>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*

Probab=97.72  E-value=0.00011  Score=68.60  Aligned_cols=131  Identities=16%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhcCcCCCEEEEC--CC-------hhHHHHHHHHHhHHhcCCCCCEEEE-C-CcH------HHHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLG--TG-------STAKHAVDRIGELLRQGKLTNIVGI-P-TSK------KTHEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~Lg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-T-nSl------~~a~~l~~~g   95 (260)
                      ..++|++.++++|++|++|.-=  +|       +|++.+++...++   +.  +++|+ + +-.      .++.+|.+.|
T Consensus       159 ~~~~I~~~g~~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rltA~eL~~~G  233 (374)
T 2yvk_A          159 TCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---DL--GLHIYACETRPVLQGSRLTAWELMQGG  233 (374)
T ss_dssp             HHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---TC--CCEEEEECCTTTTHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---CC--EEEEEEeCCCCccccHHHHHHHHHHcC
Confidence            4566999999999999999873  22       3777777776543   21  33333 2 211      2577888899


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+-        +...+|++|+|||.|-.+|.+..--|...+- -+..+....||++|.++||..+.-. +..+|+|
T Consensus       234 IpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~iE  311 (374)
T 2yvk_A          234 IDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVKC-GADIPIE  311 (374)
T ss_dssp             CEEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSS-GGGSCCC
T ss_pred             CCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeCccCCC-ccccccc
Confidence            9887653        1124999999999999999876444444432 2223456789999999999765432 2568887


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      -.+
T Consensus       312 er~  314 (374)
T 2yvk_A          312 ERD  314 (374)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            754

>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5

Probab=97.69  E-value=0.00015  Score=68.08  Aligned_cols=131  Identities=15%  Similarity=0.027  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCc--------CCCEEEECC--C-------hhHHHHHHHHHhHHhcCCCCCEEEECCc--------HHH
Q 024953           33 LKKIAAYKAVEFVE--------SGMVLGLGT--G-------STAKHAVDRIGELLRQGKLTNIVGIPTS--------KKT   87 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~--------dg~~I~Lgs--G-------ST~~~la~~L~~~~~~~~l~~itvVTnS--------l~~   87 (260)
                      ..++|++.++++|+        +|++|.-=+  |       +|++.+++...++   +  ++++|+...        -.+
T Consensus       155 ~~~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qGarlt  229 (383)
T 2a0u_A          155 FNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD---G--KLERVYACETRPWNQGARLT  229 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHT---T--CEEEEEEECCTTTTHHHHTH
T ss_pred             HHHHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHc---C--CeEEEEEeCCCCccchHHHH
Confidence            35669999999999        999998632  2       3788888777543   1  134443321        126


Q ss_pred             HHHHHhCCCcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCC
Q 024953           88 HEQAVSLGIPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGG  159 (260)
Q Consensus        88 a~~l~~~gi~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~  159 (260)
                      +.+|.+.|+++..+-        +...+|++|+|||.|-.+|.+..--|...+- -+..+....||+++..+||..+.-.
T Consensus       230 A~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~  308 (383)
T 2a0u_A          230 VYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKTAS  308 (383)
T ss_dssp             HHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCCS
T ss_pred             HHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEeCCcceecCcCCC
Confidence            778888999987653        1124999999999999999876444444432 2223456789999999999765432


Q ss_pred             CCccccEEEec
Q 024953          160 SGLAMPVEVVP  170 (260)
Q Consensus       160 ~~~~lPvEV~p  170 (260)
                       +..+|+|-.+
T Consensus       309 -g~~i~iEer~  318 (383)
T 2a0u_A          309 -GNHVEIEERE  318 (383)
T ss_dssp             -GGGSCCCBCC
T ss_pred             -ccccccccCC
Confidence             2578887654

>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5

Probab=97.67  E-value=0.00027  Score=65.55  Aligned_cols=129  Identities=22%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhcCcCCCEEEEC--CC-------hhHHHHHHHHHhHHhcCCCCCEEEE-C-CcH------HHHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLG--TG-------STAKHAVDRIGELLRQGKLTNIVGI-P-TSK------KTHEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~Lg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-T-nSl------~~a~~l~~~g   95 (260)
                      ..++|++.++++|++|++|.-=  +|       +|+..+++...++   +.  +++|+ + +-.      .++.+|.+.|
T Consensus       132 ~~~~I~~~g~~~I~~g~~ILThcnsg~lat~g~gtal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rlta~eL~~~G  206 (351)
T 1t5o_A          132 RNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQ---GK--EIRVIACETRPLNQGSRLTCWELMEDG  206 (351)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHT---TC--CCEEEEECCTTTTHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCccccccCCChHHHHHHHHHHC---CC--EEEEEEeCCCcccccHHHHHHHHHhCC
Confidence            4566999999999999999873  22       3677777776543   21  33333 2 221      2577888899


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+-        +...+|++|+|||.|-.+| ...--|...+- -+..+....+|++|.++||... -. +..+|+|
T Consensus       207 I~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~-~~-g~~i~iE  282 (351)
T 1t5o_A          207 IDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVS-VVAKHHNIPFYVAAPKATFDWE-RT-AKDVVIE  282 (351)
T ss_dssp             CCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTT-CC-GGGCCCC
T ss_pred             CCEEEEehhHHHHHhhcCCCCEEEECccchhhcC-cccccCHHHHH-HHHHHcCCCEEEeCccceeccc-cC-CCccccc
Confidence            9987653        1224999999999999999 65434443332 2223456789999999999765 32 3578888


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      -.+
T Consensus       283 er~  285 (351)
T 1t5o_A          283 ERP  285 (351)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            654

>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}

Probab=97.47  E-value=0.00061  Score=59.78  Aligned_cols=43  Identities=19%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             HHHHHhcCcCCCEEEECC--C-hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953           38 AYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLRQGKLTNIVGIPTS   84 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~Lgs--G-ST~~~la~~L~~~~~~~~l~~itvVTnS   84 (260)
                      |++|+++|+|||+|++|.  | -+...++++|.++   + .+++|+++||
T Consensus        11 a~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~-~kdLtli~~~   56 (235)
T 3rrl_A           11 LDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKK---G-IKDLIVVSNN   56 (235)
T ss_dssp             THHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEECSC
T ss_pred             HHHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhc---C-CCcEEEEEcC
Confidence            677889999999999985  2 2567788889765   2 3589999985

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B

Probab=97.45  E-value=2.8e-05  Score=67.15  Aligned_cols=108  Identities=24%  Similarity=0.305  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----------HHHhCCC---cEE
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----------QAVSLGI---PLS   99 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----------~l~~~gi---~v~   99 (260)
                      |+.||++|++.++||++|.||.| .-..++.+++ .      +++++.+.+-..-.           .+.+.|-   ...
T Consensus         2 r~~Ia~raA~el~dG~~vnlGIG-iP~~va~~~~-~------~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~~~~t~~   73 (207)
T 3rrl_B            2 REAIIKRAAKELKEGMYVNLGIG-LPTLVANEVS-G------MNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVV   73 (207)
T ss_dssp             HHHHHHHHHTTCCTTCEEEECTT-GGGGGGGGGS-S------SCCEEEETTTEEEECCCCCTTCCCTTCBCTTSBBCCEE
T ss_pred             hHHHHHHHHHhCCCCCEEEECCC-hHHHHHHhcc-C------CcEEEEeccceecCcCCCCccccCHhHeecCCceeeec
Confidence            78899999999999999999999 4555666665 2      25666655432110           0001111   111


Q ss_pred             ----EcC--------CCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhcCcEEEEEeCCCc
Q 024953          100 ----DLD--------SYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGACKKFVVIVDESKL  153 (260)
Q Consensus       100 ----~l~--------~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A~~~IlLaD~sKf  153 (260)
                          .++        +..++|++|+|+-+||..|+.         +++.|++.-    +.+.|+++|++.+|++-
T Consensus        74 ~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d----~~~~A~~vi~~~~~t~k  144 (207)
T 3rrl_B           74 PGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMD----LVHGAKKVIVIMEHCNK  144 (207)
T ss_dssp             EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHH----HHHHSSEEEEECCSBCT
T ss_pred             CCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHH----HHhCCCEEEEEEeeecC
Confidence                111        345899999999999987642         344444332    23568999999999864

>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2

Probab=97.44  E-value=0.00067  Score=58.67  Aligned_cols=44  Identities=20%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCcH
Q 024953           38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTSK   85 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnSl   85 (260)
                      +++|+++|+|||+|++|..   .+-..+.++|.++    .++++|+++++.
T Consensus         8 a~eAv~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~----~~~dLtl~~~~~   54 (220)
T 1k6d_A            8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES----GVRDLTLIANDT   54 (220)
T ss_dssp             HHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSBC
T ss_pred             HHHHHhhCCCCCEEEECCccccCCHHHHHHHHHHC----CCCCEEEEEecC
Confidence            6789999999999999863   3467888888765    235899998863

>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}

Probab=97.28  E-value=0.00096  Score=58.59  Aligned_cols=43  Identities=12%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953           38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTS   84 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS   84 (260)
                      +++|+++|+|||+|++|.-   .+-..++++|.++    ..+++|+++++
T Consensus        11 a~eAv~~IkdG~tV~~ggf~~~g~P~~li~aL~~~----~~~dLtl~~~~   56 (241)
T 3cdk_A           11 SKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQ----GVKDLTVVSNN   56 (241)
T ss_dssp             HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEEESS
T ss_pred             HHHHHhhCCCCCEEEECCcCccCcHHHHHHHHHHc----CCCCEEEEEec
Confidence            6788899999999999862   3667888889865    23589999874

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=97.02  E-value=0.0009  Score=63.56  Aligned_cols=115  Identities=12%  Similarity=0.041  Sum_probs=76.9

Q ss_pred             HHHHHHHHHH-hcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----HHHhCCCcE-------
Q 024953           33 LKKIAAYKAV-EFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----QAVSLGIPL-------   98 (260)
Q Consensus        33 ~K~~IA~~Aa-~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----~l~~~gi~v-------   98 (260)
                      .|..-|++|+ ++|+|||+|+++.+. +...++++|.++.  ..++++|++++......     .+. ..+..       
T Consensus         9 ~K~~sa~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~--~~~~dLtli~~~~~~~~~~~~~~l~-~~i~~~~~~~g~   85 (439)
T 3d3u_A            9 QRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQR--EKLENITVFHMLYFGDAPHLAPEMR-SHVHPTLNFLEG   85 (439)
T ss_dssp             HHBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTT--TTCCSEEEECSCBSSCCTTSSGGGT-TTEEEEC-----
T ss_pred             cCCCcHHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhh--CCCCCEEEEEecCCCcchhccHHhC-CcEEEEECCCCh
Confidence            3555688999 999999999999885 6678999998653  12458999987422110     111 00100       


Q ss_pred             -------------EE---------c-CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCC
Q 024953           99 -------------SD---------L-DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK  152 (260)
Q Consensus        99 -------------~~---------l-~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sK  152 (260)
                                   ..         + ...+++|+||+.+...|.+|++..+. ...+... ++++|+++|+-+++..
T Consensus        86 ~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~g~-s~~~~~~-~~~aA~~VIveVn~~v  160 (439)
T 3d3u_A           86 NSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGV-SCDYTKA-AAECAPVVVAEVNKQM  160 (439)
T ss_dssp             ---------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTT-BCBTHHH-HHHHCSEEEEEEESSS
T ss_pred             HHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEEec-cccchHH-HHhhCCeEEEEECCCC
Confidence                         00         1 13368999999999999999876643 2223333 3467999999999877

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=96.97  E-value=0.0033  Score=60.10  Aligned_cols=126  Identities=13%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             CCCCCCC-hHHHHHH--HHHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCc-HH--HHHHHH---
Q 024953           23 PPPVILT-QDELKKI--AAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTS-KK--THEQAV---   92 (260)
Q Consensus        23 ~~~~m~~-~~~~K~~--IA~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS-l~--~a~~l~---   92 (260)
                      +|.-|++ .++.|.+  =|++|+++|++||+|+++.+. +-..+.++|.++...+.++++++++.- .-  ....+.   
T Consensus        11 ~~~~~m~~~~~y~~K~vsaeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~   90 (455)
T 3qli_A           11 VPRGSMDIRALYDEKLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYEL   90 (455)
T ss_dssp             -----CCHHHHHHHHBCCHHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGG
T ss_pred             CcCCccCHHHHHHhcCCCHHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhh
Confidence            3444444 3333333  489999999999999998764 336788899876432345689997632 11  111111   


Q ss_pred             -------------------hCC--------CcEEEc---------CCCccccEEEEccCcccCCCCcccCcchhHHHHHH
Q 024953           93 -------------------SLG--------IPLSDL---------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKM  136 (260)
Q Consensus        93 -------------------~~g--------i~v~~l---------~~~~~~D~af~GadgId~~~~~i~~~~~a~~keki  136 (260)
                                         +.|        ...+..         ....++|+||+.+...|.+|++..+......  ..
T Consensus        91 ~~~~~~~~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~g~s~~~~--~~  168 (455)
T 3qli_A           91 NNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSLGVGNDYS--SR  168 (455)
T ss_dssp             TTTEEEEESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEECTTBCBTH--HH
T ss_pred             cCcEEEeeCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEEccCCCch--HH
Confidence                               001        111111         1234789999999999999887655433222  22


Q ss_pred             HHHhcCcEEEEEeC
Q 024953          137 VEGACKKFVVIVDE  150 (260)
Q Consensus       137 i~~~A~~~IlLaD~  150 (260)
                      ++.+|+++|+-++.
T Consensus       169 ~a~~Ak~VI~EVN~  182 (455)
T 3qli_A          169 IARSARRFIVEVNR  182 (455)
T ss_dssp             HHHHSSEEEEEECT
T ss_pred             HHhhcCEEEEEecC
Confidence            34568988887765

>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2

Probab=96.42  E-value=0.011  Score=53.72  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             HHHHH-hcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953           38 AYKAV-EFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTS   84 (260)
Q Consensus        38 A~~Aa-~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS   84 (260)
                      +++|+ ++|+|||+|++|.-   .+-..++++|.++    ..+++|++.++
T Consensus         6 a~eAv~~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~~dLtlv~~~   52 (317)
T 1poi_A            6 LKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ----GITDLTGLGGA   52 (317)
T ss_dssp             HHHHHHHHCCTTCEEEECSBTTBSCCHHHHHHHHHT----TCCCEEEECSE
T ss_pred             HHHHHHhhCCCCCEEEECCccccCcHHHHHHHHHhC----CCCCEEEEEEC
Confidence            56677 89999999999862   3467888888754    23589999654

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=96.17  E-value=0.015  Score=56.22  Aligned_cols=115  Identities=15%  Similarity=0.105  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECC-cHH--HH-HHHHhCCCcEE-------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPT-SKK--TH-EQAVSLGIPLS-------   99 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTn-Sl~--~a-~~l~~~gi~v~-------   99 (260)
                      |..=|++|+++|+|||+|++|..   .+-..+.++|.++..+.++ +++++++ |.-  .. .++....++..       
T Consensus        14 Kv~saeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl-~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~   92 (497)
T 2g39_A           14 KVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPL-RISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS   92 (497)
T ss_dssp             GBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCC-CEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH
T ss_pred             ccCcHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCc-eEEEEecccccccchHHHhcCCceEEEEeeCCCH
Confidence            33347889999999999999853   2445777888765321233 4899986 321  11 22222222111       


Q ss_pred             ------------E------------cCCCc-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953          100 ------------D------------LDSYP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES  151 (260)
Q Consensus       100 ------------~------------l~~~~-~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s  151 (260)
                                  .            ....+ ++|+||+-+...|.+|++..+......  ..++++|+++|+-++..
T Consensus        93 ~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIvEVn~~  167 (497)
T 2g39_A           93 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNS--ASFAIFAKQVIVEINLA  167 (497)
T ss_dssp             HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTH--HHHHHHSSEEEEEEETT
T ss_pred             HHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcccH--HHHHHhCCeEEEEEcCC
Confidence                        0            01234 699999999999999988765433222  33456789988888763

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=96.15  E-value=0.0093  Score=58.01  Aligned_cols=52  Identities=13%  Similarity=0.170  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCC----hhHHHHHHHHHhHHh-cCCCCCEEEECCcH
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTG----STAKHAVDRIGELLR-QGKLTNIVGIPTSK   85 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsG----ST~~~la~~L~~~~~-~~~l~~itvVTnSl   85 (260)
                      |..=+++|+++|+|||+|++|.-    .+-..++++|.++.. .+..+++|+++++.
T Consensus        14 K~~sa~eAv~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~   70 (531)
T 2ahu_A           14 PVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTG   70 (531)
T ss_dssp             CBCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSC
T ss_pred             ccCCHHHHHhhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEecc
Confidence            44457889999999999999762    246778888876521 12346899988653

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=96.02  E-value=0.012  Score=56.98  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             HHHHHhc--CcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHH-----HHHHHHhC---------------
Q 024953           38 AYKAVEF--VESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVSL---------------   94 (260)
Q Consensus        38 A~~Aa~l--I~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~-----~a~~l~~~---------------   94 (260)
                      |++|+++  |+|||+|+++.+. +-..++++|.++..+.+++++|++++|.-     .+..+...               
T Consensus        49 aeEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~r  128 (509)
T 1xr4_A           49 LEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLG  128 (509)
T ss_dssp             HHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHHH
T ss_pred             HHHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHHH
Confidence            8889999  9999999998664 45567777776543334569999987652     22222211               


Q ss_pred             --------CCcEEEc----------CCCccccEEEEccCcccCCCCccc--Cc---chhHHHHHHHHHhcCcEEEEEeC
Q 024953           95 --------GIPLSDL----------DSYPVVDLAIDGADEVDPFMNLVK--GR---GGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        95 --------gi~v~~l----------~~~~~~D~af~GadgId~~~~~i~--~~---~~a~~kekii~~~A~~~IlLaD~  150 (260)
                              .++....          ...+.+|+||+.+...|.+|++..  +.   ....+- ..++.+|+++|+-+++
T Consensus       129 ~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~-~a~a~~A~~VIaEVn~  206 (509)
T 1xr4_A          129 EEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYA-QVDAQYAKCVVLLTEE  206 (509)
T ss_dssp             HHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTH-HHHHHHCSEEEEEESC
T ss_pred             HHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHH-HHHHhhCCEEEEEeCC
Confidence                    0111111          133579999999999999998764  31   111122 3345678888777765

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=95.96  E-value=0.027  Score=53.40  Aligned_cols=108  Identities=17%  Similarity=0.052  Sum_probs=69.0

Q ss_pred             HHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHH----HHH-HHHhCCCcEEE-----------
Q 024953           38 AYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK----THE-QAVSLGIPLSD-----------  100 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~----~a~-~l~~~gi~v~~-----------  100 (260)
                      +++|+++|+|||+|+++.+. +...++++|.++.+  .++++|+++++..    ... .+ ...+....           
T Consensus         9 aeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~~~~~~~~~lr~~i   85 (436)
T 2oas_A            9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSL-LGHLRHRCFFGGVPTRPLL   85 (436)
T ss_dssp             HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGG-TTTEEEEESSCCTTTHHHH
T ss_pred             HHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHh-cCcEEEeecCCCHHHHHHH
Confidence            67899999999999998541 35678888886632  1358999985421    011 11 11111110           


Q ss_pred             -------------------cCCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953          101 -------------------LDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus       101 -------------------l~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                                         ....+.+|+||+.+...|.+|++..+... ..- ..++++|+++|+-++.
T Consensus        86 ~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~~s~-~~~-~~~a~aA~~VIveVn~  152 (436)
T 2oas_A           86 QSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISV-EAT-LAACQVAGKIIAHINP  152 (436)
T ss_dssp             HTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBC-TTH-HHHHHHCSEEEEEECT
T ss_pred             HcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEecCc-CcH-HHHHHhcCeEEEEEcC
Confidence                               01336899999999999999987765332 222 2334678888877776

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=95.85  E-value=0.042  Score=53.13  Aligned_cols=116  Identities=17%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCcCCCEEEECC--C-hhHHHHHHHHHhHHh----cCCCCCEEEECCcH---HHHHHHHhC---------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLR----QGKLTNIVGIPTSK---KTHEQAVSL---------   94 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~Lgs--G-ST~~~la~~L~~~~~----~~~l~~itvVTnSl---~~a~~l~~~---------   94 (260)
                      |.-=|++|+++|++||+|+++.  | .+-..+.++|.++..    .+...++++++...   .....+...         
T Consensus        13 KlvSaeEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~   92 (514)
T 4eu9_A           13 KVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPF   92 (514)
T ss_dssp             GBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESC
T ss_pred             CCCcHHHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEec
Confidence            3334889999999999999973  2 133456666655421    12122577776432   111122211         


Q ss_pred             -------------CCcEEEc-----------CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953           95 -------------GIPLSDL-----------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        95 -------------gi~v~~l-----------~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                                   .+..+..           .....+|+||+.+...|.+|++..+......+ .+ .++|+++|+-++.
T Consensus        93 ~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~~-~~-~~~A~~VIvevn~  170 (514)
T 4eu9_A           93 NTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQ-TF-LNLAEKVIIEVNE  170 (514)
T ss_dssp             CCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTHH-HH-HHHCSEEEEEEET
T ss_pred             CCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchHH-HH-HHhCCeEEEEEec
Confidence                         1111111           12247999999999999999987664433333 33 4579999998886


Q ss_pred             C
Q 024953          151 S  151 (260)
Q Consensus       151 s  151 (260)
                      .
T Consensus       171 ~  171 (514)
T 4eu9_A          171 W  171 (514)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=95.79  E-value=0.021  Score=55.22  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             HHHHHhcCcCCCEEEECCCh---hHHHHHHHHHhHHhc-----CCCCCEEEECCc-HH--HH-HHHHhCCCcEEE-----
Q 024953           38 AYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQ-----GKLTNIVGIPTS-KK--TH-EQAVSLGIPLSD-----  100 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsGS---T~~~la~~L~~~~~~-----~~l~~itvVTnS-l~--~a-~~l~~~gi~v~~-----  100 (260)
                      |++|+++|+|||+|+++..+   +-..+.++|.++..+     .++ ++|++++. ..  .. .++....++...     
T Consensus         8 aeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~-~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~   86 (506)
T 2nvv_A            8 AEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPF-KIGMFTGASTGARLDGVLAQADAVKFRTPYQSN   86 (506)
T ss_dssp             HHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCC-CEEEECSSCCCTTTHHHHHHTTCEEEEESCCCC
T ss_pred             HHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCc-eEEEEEecCCCcchhHHhccCCceEEEeeeCCC
Confidence            67888999999999998542   344666777655321     133 69998852 21  11 222222222110     


Q ss_pred             --------------------------cCCCc-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953          101 --------------------------LDSYP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES  151 (260)
Q Consensus       101 --------------------------l~~~~-~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s  151 (260)
                                                ....+ ++|+||+-+...|.+|++..+......  ..++++|+++|+-++..
T Consensus        87 ~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIveVn~~  162 (506)
T 2nvv_A           87 KDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGIL--PTICRLADRIIVELNDK  162 (506)
T ss_dssp             HHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCBTH--HHHHHHCSEEEEEEETT
T ss_pred             HHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcCcH--HHHHHhCCcEEEEECCC
Confidence                                      01234 699999999999999987765333222  33456789888888763

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=95.72  E-value=0.033  Score=53.08  Aligned_cols=113  Identities=12%  Similarity=-0.016  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECC-cHH----HHHHHHh--------------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPT-SKK----THEQAVS--------------   93 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTn-Sl~----~a~~l~~--------------   93 (260)
                      |..=|++|+++|++||+|+++.+. +-..+.++|.++..  .++++++++. |+.    ....+..              
T Consensus        10 Kl~saeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~--~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~r   87 (448)
T 3gk7_A           10 RTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTR   87 (448)
T ss_dssp             TBCCHHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGG--GCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTTTH
T ss_pred             cCCCHHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHH--hhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHHHH
Confidence            444588999999999999998754 34667788876632  3568998876 322    1111111              


Q ss_pred             -----CCCcEEE--c--------CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953           94 -----LGIPLSD--L--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        94 -----~gi~v~~--l--------~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                           ..+..+.  +        ...+++|+||+.+...|.+|++..+..-...  ..++++|+++|+-++.
T Consensus        88 ~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~~--~~~a~~A~~VI~eVn~  157 (448)
T 3gk7_A           88 GSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYT--MQAIKSAKIVLAEVND  157 (448)
T ss_dssp             HHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSBCBTH--HHHHHHCSEEEEEEET
T ss_pred             hHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEecCCcChH--HHHHHhCCeEEEEeec
Confidence                 1111111  1        1235899999999999999988765332222  2344678988888875

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=95.72  E-value=0.027  Score=53.40  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCCh-hHHHHHHHHHhHHhcCCCCCEEEECCcHH-----HHHHHHh------C-------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVS------L-------   94 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGS-T~~~la~~L~~~~~~~~l~~itvVTnSl~-----~a~~l~~------~-------   94 (260)
                      |..=|++|+++|++||+|+++.+. +-..+.++|.++.  ..++++++++....     ....+.+      .       
T Consensus        14 K~~saeEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~--~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   91 (434)
T 3eh7_A           14 RIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQA--DLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSR   91 (434)
T ss_dssp             GEECHHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHST--TTC--CEEECCBCTTCC-----------------------
T ss_pred             cCCcHHHHHHhCCCcCEEEECCccCCHHHHHHHHHHhH--hhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHHHH
Confidence            444588999999999999998643 4567888888763  23568888875321     1111110      0       


Q ss_pred             ------CCcEEE--c--------CCCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953           95 ------GIPLSD--L--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        95 ------gi~v~~--l--------~~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                            .+..+.  +        ...+++|+||+.+...|.+|++..+..-. .- ..++.+|+++|+-++.
T Consensus        92 ~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~-~~-~~~~~~A~~VI~eVn~  161 (434)
T 3eh7_A           92 KAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCD-YS-KPAAESAHLVIGEINR  161 (434)
T ss_dssp             ------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTBCT-TH-HHHHHHCSEEEEEEET
T ss_pred             HHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEecCccc-hH-HHHHHhCCeEEEEecC
Confidence                  000000  1        12358999999999999999876553222 22 2334578988888775

>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8

Probab=95.43  E-value=0.011  Score=52.21  Aligned_cols=46  Identities=11%  Similarity=0.223  Sum_probs=36.6

Q ss_pred             CCCCCChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhH
Q 024953           24 PPVILTQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGEL   69 (260)
Q Consensus        24 ~~~m~~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~   69 (260)
                      |+.-.+.+..++.+|+.|++    ++++|++|+++.|+|+..++++|...
T Consensus        33 p~~~~~~~~~~~~lg~~aA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~   82 (266)
T 3efb_A           33 SGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQA   82 (266)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCC
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCcc
Confidence            44334556667788888887    56899999999999999999999643

>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0

Probab=95.41  E-value=0.018  Score=51.02  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           30 QDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      .++.++.+|+.|++    ++++|++|+++.|+|+..++++|...    ..+++++|+
T Consensus        35 ~~~~~~~lg~~aA~~L~~~l~~~~viGv~wG~T~~~v~~~l~~~----~~~~~~vV~   87 (267)
T 3nze_A           35 EAETLDRVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTRK----MTHDSIVVQ   87 (267)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCCSSCEEEECCSHHHHHHHHTCCCC----CCSSCEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHhcCcc----CCCCCEEEE
Confidence            44567788888887    56899999999999999999999643    123677764

>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0

Probab=95.21  E-value=0.015  Score=51.38  Aligned_cols=39  Identities=23%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHh
Q 024953           30 QDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGE   68 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~   68 (260)
                      .++.++.+|+.|++    ++++|++|+++.|+|+..++++|..
T Consensus        34 ~~~~~~~lg~aaA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~   76 (267)
T 3kv1_A           34 TNEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGI   76 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHCCCC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHhccc
Confidence            34557788888887    5689999999999999999999964

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=95.08  E-value=0.14  Score=49.59  Aligned_cols=109  Identities=18%  Similarity=0.245  Sum_probs=67.5

Q ss_pred             HHHHHHhc--CcCCCEEEECCCh-hHH----HHHHHHHhHHhcCCCCCEEEECCcHHHH-----HHHHhC----------
Q 024953           37 AAYKAVEF--VESGMVLGLGTGS-TAK----HAVDRIGELLRQGKLTNIVGIPTSKKTH-----EQAVSL----------   94 (260)
Q Consensus        37 IA~~Aa~l--I~dg~~I~LgsGS-T~~----~la~~L~~~~~~~~l~~itvVTnSl~~a-----~~l~~~----------   94 (260)
                      =|++|+++  |+|||+|+++..+ +-.    .+.++|.++    .++++|++++|.-..     ......          
T Consensus        51 saeEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~  126 (519)
T 2hj0_A           51 SIHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGL  126 (519)
T ss_dssp             CHHHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBC
T ss_pred             CHHHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCC
Confidence            47888898  9999999998763 222    456666653    245899999865211     111211          


Q ss_pred             ----------C---CcEEE---------cC-CCccccEEEEccCcccCCCCccc--Ccc---hhHHHHHHHHHhcCcEEE
Q 024953           95 ----------G---IPLSD---------LD-SYPVVDLAIDGADEVDPFMNLVK--GRG---GSLLREKMVEGACKKFVV  146 (260)
Q Consensus        95 ----------g---i~v~~---------l~-~~~~~D~af~GadgId~~~~~i~--~~~---~a~~kekii~~~A~~~Il  146 (260)
                                |   ++...         +. ..+.+|+||+.+...|.+|++..  +..   ....- ..++++|+++|+
T Consensus       127 g~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~-~~~a~~A~~VIa  205 (519)
T 2hj0_A          127 RDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYA-MIDAKYADQVVI  205 (519)
T ss_dssp             HHHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHH-HHHHHHCSEEEE
T ss_pred             CcHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhh-HHHHhhCCEEEE
Confidence                      1   01110         11 23579999999999999998763  422   12333 344567888877


Q ss_pred             EEeC
Q 024953          147 IVDE  150 (260)
Q Consensus       147 LaD~  150 (260)
                      -++.
T Consensus       206 EVn~  209 (519)
T 2hj0_A          206 VTDT  209 (519)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            7765

>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5

Probab=94.79  E-value=0.044  Score=46.41  Aligned_cols=63  Identities=19%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEec
Q 024953          106 VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP  170 (260)
Q Consensus       106 ~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p  170 (260)
                      .+|++|+|||.|-.+|.+..--|...+- .+..+....+|++|.++||..+.-. +..+|+|-.+
T Consensus        51 ~Vd~VivGAd~v~~nG~v~nkiGT~~~A-l~Ak~~~vPf~V~a~~~k~~~~~~~-g~~i~iE~r~  113 (191)
T 1w2w_B           51 PIKAAFVGADRIVRNGDTANKIGTLQLA-VICKQFGIKFFVVAPKTTIDNVTET-GDDIIVEERN  113 (191)
T ss_dssp             CEEEEEECCSEECTTSCEEEETTHHHHH-HHHHHHTCEEEEECCGGGBCSSCCS-GGGCCCCBCC
T ss_pred             CCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeeeccCC-cceeecccCC
Confidence            3999999999999998876544444432 2223456789999999999765432 2567887654

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=94.79  E-value=0.079  Score=50.94  Aligned_cols=110  Identities=23%  Similarity=0.280  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH----------HH-HHHhCC---Cc
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT----------HE-QAVSLG---IP   97 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~----------a~-~l~~~g---i~   97 (260)
                      +.++.||+.|++.|+||++|.||.| --..++.++.+.      +++++.+-+-..          .. .+.+.|   ..
T Consensus       261 ~~~~~Ia~raA~el~dG~~vnlGIG-iP~~v~~~~~~~------~~l~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~t  333 (481)
T 3k6m_A          261 NVRERIIKRAALEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLINAGKETVT  333 (481)
T ss_dssp             -CHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGCCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSBBCC
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEccC-HHHHHHhhhccC------CcEEEEECCcEeCCccCCCCCccCcccccCCCceEe
Confidence            4578999999999999999999999 444566665432      145544321100          00 000111   11


Q ss_pred             EE----EcC--------CCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhc-CcEEEEEeCCC
Q 024953           98 LS----DLD--------SYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGAC-KKFVVIVDESK  152 (260)
Q Consensus        98 v~----~l~--------~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A-~~~IlLaD~sK  152 (260)
                      ..    .++        +.-++|++|+|+-+||..|+.         ++|.|++.-    +.+.| +++|+...|+.
T Consensus       334 ~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D----~~~ga~~k~ii~~~~t~  406 (481)
T 3k6m_A          334 VLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEHSA  406 (481)
T ss_dssp             EEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHH----HTCCTTSEEEEECCSBC
T ss_pred             ccccceecCCHHHeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcchh----hhccCCceEEEEEeeEc
Confidence            11    011        234899999999999987642         344445432    23457 58888888764

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=94.47  E-value=0.15  Score=48.97  Aligned_cols=43  Identities=14%  Similarity=0.236  Sum_probs=33.1

Q ss_pred             HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953           38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTS   84 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS   84 (260)
                      +++|+++|+|||+|.+|.-   .+-..++++|.++   +. +++|+|.|+
T Consensus         7 ~~eAv~~I~DG~ti~~gGf~~~g~P~~li~al~~~---~~-kdLt~v~~~   52 (481)
T 3k6m_A            7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKT---GV-KELTAVSNN   52 (481)
T ss_dssp             HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---CC-CSEEEECSC
T ss_pred             HHHHHhhCCCCCEEEECCccccCcHHHHHHHHHHc---CC-CceEEEEeC
Confidence            5678889999999999862   2457788888764   22 589999885

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=94.46  E-value=0.14  Score=49.67  Aligned_cols=106  Identities=22%  Similarity=0.210  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH-HhcCCCCCEEEECCc-----HHHHHHHHhCCCcE---EEcC--
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL-LRQGKLTNIVGIPTS-----KKTHEQAVSLGIPL---SDLD--  102 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~-~~~~~l~~itvVTnS-----l~~a~~l~~~gi~v---~~l~--  102 (260)
                      +++||+.++++|+||+++.+|.| ....++.+|.+. ..    +++++.+-+     .......  .+...   ..+.  
T Consensus       288 ~~~Ia~~~A~~i~dG~~v~lGiG-iP~av~~~l~~~~~~----~~l~~~~E~G~~g~~~~~g~~--~g~~~~~~~~~~~~  360 (531)
T 2ahu_A          288 RKLVARRALFEMRKGAVGNVGVG-IADGIGLVAREEGCA----DDFILTVETGPIGGITSQGIA--FGANVNTRAILDMT  360 (531)
T ss_dssp             HHHHHHHHHTTCCTTCEEEECSS-TTTTHHHHHHHHTCG----GGSEEBCTTSEESCBCC-------CCCBSCSEECCHH
T ss_pred             HHHHHHHHHHhccCCCEEEecCc-HHHHHHHHHHhcCCC----CCeEEEEccceecCccCCCcc--ceeEECHHHhcchh
Confidence            67899999999999999999999 666788888762 10    134443311     0000000  01100   0110  


Q ss_pred             ------CCccccEEEEccCcccCCCCc--------ccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953          103 ------SYPVVDLAIDGADEVDPFMNL--------VKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus       103 ------~~~~~D~af~GadgId~~~~~--------i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                            +..++|++|+|+-+||..|+.        +.|.|++.=    +.+.|++.|+...|
T Consensus       361 ~~f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~D----~~~gA~~~i~~~~~  418 (531)
T 2ahu_A          361 SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFID----ISATSKKIIFCGTL  418 (531)
T ss_dssp             HHHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHH----HHTTCSEEEEECCS
T ss_pred             hhhheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcchh----hhcCCCeEEEEecc
Confidence                  234799999999999987653        344444332    23568888877764

>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8

Probab=94.33  E-value=0.048  Score=48.08  Aligned_cols=46  Identities=22%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           33 LKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        33 ~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      .++.+++.|++    +|+++++|+|++|+|...++++|...    ..+++++|.
T Consensus        39 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~----~~~~v~~v~   88 (266)
T 2gnp_A           39 LSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK----SVRNVHFYP   88 (266)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC----CCSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhcccc----CCCCCEEEE
Confidence            46777777776    56899999999999999999999642    123666654

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=94.11  E-value=0.55  Score=45.28  Aligned_cols=38  Identities=18%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhcC------cCCCEEEECCChhHHHHHHHHHhH
Q 024953           32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGEL   69 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI------~dg~~I~LgsGST~~~la~~L~~~   69 (260)
                      +.+++||+.|+++|      +||+++=+|.|+....++.+|.+.
T Consensus       248 ~~~~~IA~~~a~~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~  291 (509)
T 1xr4_A          248 PRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDK  291 (509)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCCCEEEeccChHHHHHHHHhhhh
Confidence            55789999999999      999999999999888899999875

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=93.81  E-value=0.35  Score=46.84  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHhcC------cCCCEEEECCChhHHHHHHHHHhH
Q 024953           32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGEL   69 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI------~dg~~I~LgsGST~~~la~~L~~~   69 (260)
                      +.+++||+.|+++|      +||+++-+|.|+....++.+|.++
T Consensus       251 ~~~~~IA~~~a~~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~  294 (519)
T 2hj0_A          251 PKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQ  294 (519)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccCCCCCEEEeccChHHHHHHHHHhhh
Confidence            45788999999985      999999999998888888888776

>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*

Probab=93.72  E-value=0.04  Score=48.27  Aligned_cols=47  Identities=17%  Similarity=0.181  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           33 LKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        33 ~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      .++.++++|++    +|+++++|+|++|+|...++++|....   ..+++++|.
T Consensus        38 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~~---~~~~v~~v~   88 (255)
T 2okg_A           38 VKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS---KNRELLFVP   88 (255)
T ss_dssp             HHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT---TCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhhcccc---CCCCCEEEE
Confidence            35667776665    568999999999999999999996421   123566654

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=93.64  E-value=0.42  Score=45.18  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL   69 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~   69 (260)
                      +.+++||+.|+++|+||+++=+|.|+....++.+|.++
T Consensus       188 ~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~  225 (436)
T 2oas_A          188 AVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGH  225 (436)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEECCSSHHHHHHHHTCTTC
T ss_pred             hHHHHHHHHHHHhcCCCCEEeecCcHHHHHHHHHHhhc
Confidence            55788999999999999999999999999999999765

>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8

Probab=91.42  E-value=0.19  Score=44.11  Aligned_cols=38  Identities=16%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHh----cCcCCCEEEEC-CChhHHHHHHHHHhH
Q 024953           32 ELKKIAAYKAVE----FVESGMVLGLG-TGSTAKHAVDRIGEL   69 (260)
Q Consensus        32 ~~K~~IA~~Aa~----lI~dg~~I~Lg-sGST~~~la~~L~~~   69 (260)
                      ..++.+++.|++    +|+++++|+|+ +|+|...++++|...
T Consensus        38 ~~~~~l~~~aA~~l~~~l~~~~viGla~~G~T~~~~~~~l~~~   80 (264)
T 2r5f_A           38 SIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQ   80 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCEEEECcchHHHHHHHHhhccc
Confidence            346778887776    56899999999 999999999999653

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=90.06  E-value=0.55  Score=44.78  Aligned_cols=45  Identities=11%  Similarity=0.122  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      +..++||+.++++|+||.++=+|.|+....++.+|.++      +++.+-|
T Consensus       219 ~~~~~Ia~~va~~i~dG~~lQ~GiG~ip~Av~~~L~~~------~~lgi~t  263 (455)
T 3qli_A          219 PEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDR------NDLGIHT  263 (455)
T ss_dssp             THHHHHHHHHHHTCCTTCEEEECSSHHHHHHHHHGGGC------CSBEEBC
T ss_pred             hHHHHHHHHHHHHhcCCCeEEeccchHHHHHHHhcCcC------CCeEEEc
Confidence            44678999999999999999999999999999999864      2666655

>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3

Probab=87.43  E-value=0.073  Score=48.74  Aligned_cols=47  Identities=9%  Similarity=-0.151  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHH-HHHH
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-HEQA   91 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~-a~~l   91 (260)
                      ++|++||++|++   +++    |.|||+.++++.|++..      ++++|||+... +..+
T Consensus       100 ~eK~~Ia~~aa~---~~~----d~gtt~~~~a~~Ls~~~------~~tvv~~~~~~~~~~L  147 (338)
T 1stz_A          100 EADLAVETFKSM---PLA----DPEKVLFLAGNLLARLT------EGYVLIERPNTRDLKI  147 (338)
T ss_dssp             CCCHHHHTCCCT---TBC----CHHHHHHHHHHHHHHHH------TCEEEEECCCGGGCBC
T ss_pred             HHHHHHHHHHhh---cCC----CHHHHHHHHHHHHhccC------CeEEEEeCCHHHHHHh
Confidence            569999988875   666    99999999999998652      68988888753 4444

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=85.97  E-value=1  Score=42.79  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL   69 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~   69 (260)
                      +..++||+.++++|+||+++=+|.|+....++.+|.+.
T Consensus       193 ~~~~~IA~~~a~~i~dG~~lqlGIG~ip~aV~~~L~~~  230 (448)
T 3gk7_A          193 EVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDK  230 (448)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEBCSSHHHHHHHHTCTTC
T ss_pred             cHHHHHHHHHHHHccCCCEEEeccCcHHHHHHHHhhhc
Confidence            56788999999999999999999999999999988753

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=85.34  E-value=1.3  Score=41.81  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhH
Q 024953           32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL   69 (260)
Q Consensus        32 ~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~   69 (260)
                      +..++||+.|+++|+||.++=+|.|+....++..|.+.
T Consensus       197 ~~~~~Ia~~~a~~i~dG~~lq~GiG~ip~AV~~~L~~~  234 (434)
T 3eh7_A          197 EVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDK  234 (434)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEECCSSHHHHHHHHTTTTC
T ss_pred             hHHHHHHHHHHHhccCCCEEEeccchHHHHHHHHhhhc
Confidence            55788999999999999999999999999999988753

>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A

Probab=81.06  E-value=2.3  Score=31.78  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             cccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEe-CCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecccc
Q 024953          163 AMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVT-DNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFL  241 (260)
Q Consensus       163 ~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vT-d~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF~  241 (260)
                      .+-|.+.|.....|.+.|.++   .|+  ++      ..++ +.|.+|+=+--.. ..+..+.-+.++.+|||..+.|-.
T Consensus         9 slvV~~~p~~~~~V~~~L~~i---pgv--Ei------~~~~~~~GkiVV~iEa~~-~~~l~~~i~~I~~i~GVlst~lvy   76 (95)
T 2jsx_A            9 SLVVQAKSERISDISTQLNAF---PGC--EV------AVSDAPSGQLIVVVEAED-SETLIQTIESVRNVEGVLAVSLVY   76 (95)
T ss_dssp             EEEEEECTTSHHHHHHHHTTS---TTE--EE------EEEETTTTEEEEEEEESS-HHHHHHHHHHHTTSTTEEEEEESS
T ss_pred             EEEEEECCCCHHHHHHHHHCC---CCe--EE------EEecCCCCCEEEEEEeCC-HHHHHHHHHHHhcCCCccEEeEEE
Confidence            356777899999999999997   354  32      2233 3677777554332 445556668899999999999987


Q ss_pred             cccc
Q 024953          242 DMAT  245 (260)
Q Consensus       242 ~~~~  245 (260)
                      ...+
T Consensus        77 ~~~e   80 (95)
T 2jsx_A           77 HQQE   80 (95)
T ss_dssp             CCCC
T ss_pred             EEec
Confidence            6543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d1lk5a1	149	c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate	6e-42
d1o8ba1	124	c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphat	8e-36
d1uj4a1	151	c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate	3e-35
d1m0sa1	147	c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate	8e-33
d1lk5a2	80	d.58.40.1 (A:131-210) D-ribose-5-phosphate isomera	1e-18
d1uj4a2	74	d.58.40.1 (A:132-205) D-ribose-5-phosphate isomera	2e-17
d1m0sa2	72	d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera	2e-17
d1o8ba2	72	d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera	3e-16

>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 149

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  138 bits (349), Expect = 6e-42
 Identities = 65/154 (42%), Positives = 103/154 (66%), Gaps = 6/154 (3%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +  +E+KKIAA +A++F+E  MV+GLGTGST  + +  +GE L++G++++IVG+PTS + 
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              A+   IP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++E     F+V+
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQ 181
           VDE KLV +L         ++V    +   K+L+
Sbjct: 121 VDERKLVDYLD------IADIVIVGTREGVKKLE 148

>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 124

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score =  121 bits (306), Expect = 8e-36
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 50  VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDL 109
           ++G+GTGSTA H +D +G +    K      + +S  + E+  SLGI + DL+    + +
Sbjct: 1   IVGVGTGSTAAHFIDALGTM----KGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGI 56

Query: 110 AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169
            +DGADE++  M ++KG G +L REK++    +KF+ I D SK V  L   G  + +   
Sbjct: 57  YVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILANRGADVALIGT 116

Query: 170 PYCWK 174
           P   K
Sbjct: 117 PDGVK 121

>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Thermus thermophilus [TaxId: 274]

 Score =  121 bits (304), Expect = 3e-35
 Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 2/147 (1%)

Query: 31  DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
           +  KK AA+ A+ +V+ GMV+GLGTGSTA++AV  +   LR+G+L  +VG+PTS+ T E 
Sbjct: 4   ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 63

Query: 91  AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
           A               VDLAIDGADE+ P + L+KG GG+LLREK+VE   K+F+VI D 
Sbjct: 64  AKR-EGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 122

Query: 151 SKLVPHLGGSGL-AMPVEVVPYCWKFT 176
           +K VP L   G+    +   P+  +  
Sbjct: 123 TKKVPVLLFVGMATRALVAGPFGVEEL 149

>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Length = 147

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Haemophilus influenzae [TaxId: 727]

 Score =  115 bits (288), Expect = 8e-33
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           + Q E+KK+AA  A+++V++  ++G+G+GST    ++ +       K      +  SK++
Sbjct: 1   MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEAL----GTIKDKIQGAVAASKES 56

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
            E     GI + + +    +D+ +DGADE++P   ++KG G +L REK+V    KKF+ I
Sbjct: 57  EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQ 181
           VD SK V  L         +VV       AK + 
Sbjct: 117 VDSSKQVDVLFAL---RGADVVIVGTPEGAKVID 147

>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 76.0 bits (187), Expect = 1e-18
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKV 223
           +P+EV+P  WK   + L     +     ++    + P +TDNGN++ID    + I D   
Sbjct: 6   VPIEVIPQAWKAIIEELSIF--NAKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLD 62

Query: 224 ASDNILRLAGVVEHGMF 240
               +  + GV+E+G+F
Sbjct: 63  MEIELNTIPGVIENGIF 79

>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Length = 74

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Thermus thermophilus [TaxId: 274]

 Score = 72.9 bits (179), Expect = 2e-17
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKV 223
           +PVE+VP+ ++ T K + DL    G   +LR  G++ + TD G+ + D      IGD   
Sbjct: 5   VPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIADCRFGP-IGDPLG 59

Query: 224 ASDNILRLAGVVEHG 238
               +L + GVVE G
Sbjct: 60  LHRALLEIPGVVETG 74

>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 72.4 bits (178), Expect = 2e-17
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 159 GSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDI 218
           GS   +PVEV+P       ++L  L    G   + R    +  VTDNGN ++D++    I
Sbjct: 1   GSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYR----EGVVTDNGNVILDVHNFS-I 51

Query: 219 GDLKVASDNILRLAGVVEHG 238
            +       +  +AGVV +G
Sbjct: 52  LNPVEIEKELNNVAGVVTNG 71

>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Escherichia coli [TaxId: 562]

 Score = 69.3 bits (170), Expect = 3e-16
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 9/77 (11%)

Query: 164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKV 223
           +PVEV+P      A++L  L    G   + R    Q  VTDNGN ++D++  + I D   
Sbjct: 5   LPVEVIPMARSAVARQLVKL----GGRPEYR----QGVVTDNGNVILDVHGME-ILDPIA 55

Query: 224 ASDNILRLAGVVEHGMF 240
             + I  + GVV  G+F
Sbjct: 56  MENAINAIPGVVTVGLF 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d1uj4a1	151	D-ribose-5-phosphate isomerase (RpiA), catalytic d	99.98
d1lk5a1	149	D-ribose-5-phosphate isomerase (RpiA), catalytic d	99.97
d1o8ba1	124	D-ribose-5-phosphate isomerase (RpiA), catalytic d	99.96
d1m0sa1	147	D-ribose-5-phosphate isomerase (RpiA), catalytic d	99.96
d1lk5a2	80	D-ribose-5-phosphate isomerase (RpiA), lid domain	99.96
d1uj4a2	74	D-ribose-5-phosphate isomerase (RpiA), lid domain	99.95
d1o8ba2	72	D-ribose-5-phosphate isomerase (RpiA), lid domain	99.95
d1m0sa2	72	D-ribose-5-phosphate isomerase (RpiA), lid domain	99.94
d1vb5a_	274	Putative eIF-2B subunit 2-like protein PH0440 {Pyr	98.15
d1t5oa_	340	Putative eIF-2B delta-subunit {Archaeon Archaeoglo	97.67
d1t9ka_	340	Probable methylthioribose-1-phosphate isomerase TM	97.66
d1k6da_	219	Acetate:CoA transferase alpha {Escherichia coli [T	97.6
d2g39a1	221	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	96.94
d1ooya2	242	Succinate:CoA transferase, N-terminal domain {Pig	96.66
d2a0ua1	374	Initiation factor 2b {Leishmania major [TaxId: 566	96.44
d1poib_	260	Glutaconate:CoA transferase beta {Acidaminococcus	96.42
g1w2w.1	402	Putative methylthioribose-1-phosphate isomerase Yp	96.35
d2ahua2	273	Putative enzyme YdiF N-terminal domain {Escherichi	95.69
d2ahua1	247	Putative enzyme YdiF C-terminal domain {Escherichi	95.58
d2gnpa1	262	Transcriptional regulator SP0247 {Streptococcus pn	95.57
d1poia_	317	Glutaconate:CoA transferase alpha {Acidaminococcus	95.38
d3efba1	255	Sor-operon regulator SorC {Shigella flexneri [TaxI	95.15
d2okga1	250	Central glycolytic gene regulator CggR {Bacillus s	95.1
d1xr4a1	236	Putative citrate lyase alpha chain, citF2 {Salmone	95.05
d1xr4a2	269	Putative citrate lyase alpha chain, citF2 {Salmone	93.86
d2r5fa1	258	Transcriptional regulator PSPTO2395 {Pseudomonas s	93.83
d2o0ma1	247	Transcriptional regulator EF1965 {Enterococcus fae	92.09
d1ooya1	221	Succinate:CoA transferase, C-terminal domain {Pig	91.17
d1i1ga2	80	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.52
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	86.7

>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=8.6e-33  Score=227.59  Aligned_cols=146  Identities=48%  Similarity=0.661  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccE
Q 024953           30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDL  109 (260)
Q Consensus        30 ~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~  109 (260)
                      ++.+|++||++|++||+|||+||||+|||+.+++++|.++.......++..+++.......+...+.....+. .+++|+
T Consensus         3 ~~~~K~~IA~~A~~~I~dg~~I~LdsGTT~~~la~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~l~-~~~~D~   81 (151)
T d1uj4a1           3 LESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLP-PEGVDL   81 (151)
T ss_dssp             THHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCC-TTCEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcccceeeeccchhhHHHHHhcCCccccccc-cceecE
Confidence            5678999999999999999999999999999999999876543333477888999888887777777777774 589999


Q ss_pred             EEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCC-CccccEEEecCcHHHH
Q 024953          110 AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWKFT  176 (260)
Q Consensus       110 af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~-~~~lPvEV~p~~~~~v  176 (260)
                      ||+||||+|.+++++++.++....+|+|.++|+++|+|+||||++++|+.. .+|+||||+|+++++|
T Consensus        82 aF~g~~gvd~~~g~~~~~~~e~~~kk~~~~~A~~~ilLaD~SKlv~~L~~~~~~p~piev~p~~~~~v  149 (151)
T d1uj4a1          82 AIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLLFVGMATRALVAGPFGVEEL  149 (151)
T ss_dssp             EEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSEECSCCSEEEEEETTEEEEE
T ss_pred             EEEccccccCCcCcccCCHHHHHHHHHHHHhcCeEEEEEECCceecccccCCCCCEeEEEccchHhhc
Confidence            999999999998887665544444455667899999999999999998431 4799999999998654

>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2.3e-31  Score=218.20  Aligned_cols=144  Identities=42%  Similarity=0.680  Sum_probs=117.4

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccc
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV  107 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~  107 (260)
                      +|++|+|++||++|++||+|||+||||+|||+.++|++|+++....-..+...++++......+...|.....+.+.+++
T Consensus         1 mn~~E~K~~IA~~Aa~lI~dg~~I~ldsGTT~~~la~~L~~~~~~~v~t~~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~   80 (149)
T d1lk5a1           1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI   80 (149)
T ss_dssp             CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHhhcccccccceeeechhhhHHHHHhcCccccchhhcccc
Confidence            57888999999999999999999999999999999999987643222336677777777777777778777766677899


Q ss_pred             cEEEEccCcccCCCCcccCc-chhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHHHH
Q 024953          108 DLAIDGADEVDPFMNLVKGR-GGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAK  178 (260)
Q Consensus       108 D~af~GadgId~~~~~i~~~-~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v~~  178 (260)
                      |++|+||+++|.+++++++. +++.++ |.|.++|+++|+|+|||||+.+|+      |+||+|.+|.++.+
T Consensus        81 d~~f~g~~~id~~~g~~~~~~~~~~~k-k~m~~~A~~~illaDsSK~v~~L~------~iev~~~~~~~~~~  145 (149)
T d1lk5a1          81 DVAVDGADEVDPNLNLIKGRGAALTME-KIIEYRAGTFIVLVDERKLVDYLD------IADIVIVGTREGVK  145 (149)
T ss_dssp             EEEEECCSEECTTCCEECCTTSCHHHH-HHHHHTEEEEEEEEEGGGBCSSTS------CCCEEEEEETTEEE
T ss_pred             cEEEEeCCEEcCcCceeCCCHHHHHHH-HHHHHhcCeEEEEEeCCcccccCC------CcCCCeeehHHHHH
Confidence            99999999999998877654 555565 555578999999999999999886      56777888766543

>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-31  Score=212.46  Aligned_cols=123  Identities=34%  Similarity=0.534  Sum_probs=85.2

Q ss_pred             EEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHHHHhCCCcEEEcCCCccccEEEEccCcccCCCCcccCcch
Q 024953           50 VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGG  129 (260)
Q Consensus        50 ~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~l~~~gi~v~~l~~~~~~D~af~GadgId~~~~~i~~~~~  129 (260)
                      +||||||||+.+++++|+++..    ....+|++|..++..+++.|+++..+++..++|+||||||+||++++++||+|+
T Consensus         1 VvGlGtGSTv~~~i~~L~~~~~----~~~~~V~tS~~t~~~~~~~gi~~~~l~~~~~iDi~iDGADevd~~l~lIKGGGg   76 (124)
T d1o8ba1           1 IVGVGTGSTAAHFIDALGTMKG----QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGA   76 (124)
T ss_dssp             CEEECCSCC-------------------CCEEESCCC------------CCGGGCSCEEEEEECCSEECTTSCEECCCCC
T ss_pred             CEEecchHHHHHHHHHHHhhhC----CcceEEcChHHHHHHHHHcCCCccChhhCCceeEEecchhhcCCCceehhhCCc
Confidence            5899999999999999997632    145689999999999999999999998878999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEEEecCcHHHH
Q 024953          130 SLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFT  176 (260)
Q Consensus       130 a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvEV~p~~~~~v  176 (260)
                      |++|||+++++|+++|+++|+||++++||....|+||||.|++|++|
T Consensus        77 al~rEKivA~~A~~~i~I~DesK~V~~Lg~~~~PVevev~p~a~~~V  123 (124)
T d1o8ba1          77 ALTREKIIASVAEKFICIADASKQVDILANRGADVALIGTPDGVKTI  123 (124)
T ss_dssp             -HHHHHHHHHHEEEEEEEEEGGGBCSSBCSSCCSEEEEEETTEEEEE
T ss_pred             cchHHHHHHHhcCcEEEEEeCCceecccCCCCCcEEEEEcccchhhc
Confidence            99999999999999999999999999999422355666679999764

>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=4.9e-30  Score=210.19  Aligned_cols=141  Identities=32%  Similarity=0.491  Sum_probs=110.4

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHH--HHHHHHhCCCcEEEcCCCc
Q 024953           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK--THEQAVSLGIPLSDLDSYP  105 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~--~a~~l~~~gi~v~~l~~~~  105 (260)
                      +++.|+|++||++|++||+|||+|+||+|||+.+++++|..+.      +.++++++..  ........|.......+.+
T Consensus         1 m~~~e~K~~IA~~A~~lI~dg~~I~LdsGTT~~~la~~L~~~~------~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~   74 (147)
T d1m0sa1           1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIK------DKIQGAVAASKESEELLRKQGIEVFNANDVS   74 (147)
T ss_dssp             CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTTG------GGSCEEEESSHHHHHHHHHTTCCBCCGGGCS
T ss_pred             CChHHHHHHHHHHHHHhCCCCCEEEECCchhHHHHHHHHHhhc------cceeeeccchHHhHHHHHhcCCcceeccccc
Confidence            4578899999999999999999999999999999999998752      3344444443  3444456676666666778


Q ss_pred             cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCC-CccccEEEecCcHH
Q 024953          106 VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWK  174 (260)
Q Consensus       106 ~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~-~~~lPvEV~p~~~~  174 (260)
                      ++|++|+||||+|++++++++.++....+|+|.++|+++|+|+|||||+++||.. ..|+++|+.|.+.+
T Consensus        75 ~~D~aF~g~~gi~~~~glt~~~~~~~~~~k~~~~~a~~~ivlaDsSKlv~~l~~~~~i~v~i~~~~~~~~  144 (147)
T d1m0sa1          75 SLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLFALRGADVVIVGTPEGAK  144 (147)
T ss_dssp             CEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTECTTCCSEEEEEETTEEE
T ss_pred             cccEEEecCccccCCcceeeCCHHHHHHHHHHHHhCCcEEEEecCCccccccCCCCCeeEEEEEehHhHh
Confidence            9999999999999998887766555545566667899999999999999998752 24555677887654

>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=1.4e-29  Score=187.45  Aligned_cols=76  Identities=33%  Similarity=0.625  Sum_probs=71.7

Q ss_pred             CccccEEEecCcHHHHHHHHHHhhhhCCCceEEeec--CCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeec
Q 024953          161 GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHG  238 (260)
Q Consensus       161 ~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~--~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~G  238 (260)
                      +|||||||+|++|+++.++|+++    |+.+++|++  +++||+|||||||+|++|+. +.||.+++..|++||||||||
T Consensus         3 KfPlPVEV~p~~~~~v~~~l~~~----g~~~~lR~~~~~~gp~iTDnGN~I~D~~~~~-i~~p~~l~~~L~~ipGVVe~G   77 (80)
T d1lk5a2           3 KMPVPIEVIPQAWKAIIEELSIF----NAKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVIENG   77 (80)
T ss_dssp             SCCEEEEECGGGHHHHHHHGGGG----TCEEEECBCSSSSSBCCCTTSCEEEEEECSC-CSCHHHHHHHHHTSTTEEEES
T ss_pred             cCCcCEEEcHhHHHHHHHHHHHc----CCCceEecccCCCCCeEecCCCEEEECCCCC-CCCHHHHHHHHHCCCCEEeeC
Confidence            59999999999999999999996    899999985  56899999999999999996 999999999999999999999


Q ss_pred             ccc
Q 024953          239 MFL  241 (260)
Q Consensus       239 lF~  241 (260)
                      ||.
T Consensus        78 LFa   80 (80)
T d1lk5a2          78 IFA   80 (80)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            994

>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=7.6e-29  Score=180.86  Aligned_cols=73  Identities=36%  Similarity=0.600  Sum_probs=70.4

Q ss_pred             CccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeec
Q 024953          161 GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHG  238 (260)
Q Consensus       161 ~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~G  238 (260)
                      +|||||||+||+|+++.++|+++    |+.+++|+++++||+|||||||+||+|.. +.||.+|+.+|++||||||||
T Consensus         2 ~FPlPVEV~pf~~~~v~~~l~~l----g~~~~lR~~~~~p~iTDnGN~IlD~~~~~-i~dp~~l~~~L~~ipGVVe~G   74 (74)
T d1uj4a2           2 RGPVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIADCRFGP-IGDPLGLHRALLEIPGVVETG   74 (74)
T ss_dssp             SSCEEEEECSTTHHHHHHHHHHT----TCCEEECEETTEECCCTTSCEEEEECCCS-CSCHHHHHHHHHTSTTEEEES
T ss_pred             CCCccEEEcHhHHHHHHHHHHHh----CCCceEeecCCceEEecCCCEEEECCCCC-cCCHHHHHHHHHcCCCEeccC
Confidence            49999999999999999999996    99999999989999999999999999985 999999999999999999998

>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.5e-28  Score=176.32  Aligned_cols=71  Identities=35%  Similarity=0.527  Sum_probs=68.0

Q ss_pred             CccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeeccc
Q 024953          161 GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF  240 (260)
Q Consensus       161 ~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~GlF  240 (260)
                      +|||||||+|++|+.|.++|+++    |+.+++|+    |++|||||||+||+|.. +.||.+++.+|++||||||||||
T Consensus         2 ~FPlPvEV~p~~~~~v~~~l~~~----g~~~~~R~----~~iTDnGN~IlD~~~~~-i~dp~~l~~~L~~ipGVVe~GLF   72 (72)
T d1o8ba2           2 KFPLPVEVIPMARSAVARQLVKL----GGRPEYRQ----GVVTDNGNVILDVHGME-ILDPIAMENAINAIPGVVTVGLF   72 (72)
T ss_dssp             SSCEEEEECGGGHHHHHHHHHHT----TCEEEECT----TCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEE
T ss_pred             CCCcCEEEehhHHHHHHHHHHHc----CCCcccCc----ceEecCCCEEEECCCCC-CCCHHHHHHHHhCCCCEEecCCC
Confidence            49999999999999999999996    89999994    89999999999999996 99999999999999999999999

>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=3.6e-27  Score=170.96  Aligned_cols=70  Identities=31%  Similarity=0.490  Sum_probs=66.8

Q ss_pred             CccccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHHHHHHhcCCCcEEeecc
Q 024953          161 GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGM  239 (260)
Q Consensus       161 ~~~lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~l~~~l~~i~GVve~Gl  239 (260)
                      +|||||||+||+|+++.++|+++    |+.+++|+    ||+|||||||+||+|.. +.||.+|+++|++|||||||||
T Consensus         3 kFPlPVEV~pf~~~~v~~~l~~l----g~~~~lR~----~~iTDnGN~IlD~~~~~-i~dp~~l~~~L~~IpGVVE~GL   72 (72)
T d1m0sa2           3 TFPLPVEVIPMARSQVGRKLAAL----GGSPEYRE----GVVTDNGNVILDVHNFS-ILNPVEIEKELNNVAGVVTNGI   72 (72)
T ss_dssp             SSCEEEEECGGGHHHHHHHHHHT----TCEEEECT----TCCCTTSCEEEEEESCC-CSCHHHHHHHHHTSTTEEEESE
T ss_pred             CCCEeEEEcHhHHHHHHHHHHHh----CCCccccC----CcEecCCCEEEECCCCC-cCCHHHHHHHHHCCCCEEccCC
Confidence            59999999999999999999997    89999994    89999999999999986 9999999999999999999997

>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=9.7e-06  Score=70.70  Aligned_cols=121  Identities=21%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhcCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEE-ECCc------HHHHHHHHhCCCcEEEcC
Q 024953           31 DELKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVG-IPTS------KKTHEQAVSLGIPLSDLD  102 (260)
Q Consensus        31 ~~~K~~IA~~Aa~lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itv-VTnS------l~~a~~l~~~gi~v~~l~  102 (260)
                      .+..++||+.++++|++|++|.- +-++|+..+++...++.     +++.| |+-|      ...+.+|.+.|+++..+.
T Consensus        92 ~~a~~~i~~~~~~~i~~g~~ILT~~~S~tv~~~l~~a~~~g-----k~~~V~v~EsrP~~eG~~la~~L~~~GI~vtlI~  166 (274)
T d1vb5a_          92 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK-----KRFKVILTESSPDYEGLHLARELEFSGIEFEVIT  166 (274)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTT-----CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHHhHHhcCCCCEEEEeCchHHHHHHHHHHHHcC-----CCeEEEEeCCCcccchHHHHHHHHHcCCceEEec
Confidence            34578899999999999999884 66788888888775431     13333 3333      245778888999887653


Q ss_pred             C------CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCC
Q 024953          103 S------YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHL  157 (260)
Q Consensus       103 ~------~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~l  157 (260)
                      .      ..+.|++++|||.|..+|....-.|...+- .+..+...-+|++++++||..+.
T Consensus       167 Dsa~~~~m~~~d~VivGAd~v~~nG~v~nkiGT~~~A-~~Ak~~~vP~~V~a~~~k~~~~~  226 (274)
T d1vb5a_         167 DAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLA-LACHENAIPFYVAAETYKFHPTL  226 (274)
T ss_dssp             GGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSSC
T ss_pred             chHHHHHhhcCCEEEEeeeEEecCCCEEeccchhHHH-HHHHHcCCCceEeccccccCCCC
Confidence            1      126899999999999999876555554443 22234567899999999997654

>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.67  E-value=0.0001  Score=65.85  Aligned_cols=129  Identities=19%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECCCh---------hHHHHHHHHHhHHhcCCCCCEEEE-CCc-H------HHHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLGTGS---------TAKHAVDRIGELLRQGKLTNIVGI-PTS-K------KTHEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~LgsGS---------T~~~la~~L~~~~~~~~l~~itvV-TnS-l------~~a~~l~~~g   95 (260)
                      ..++|++.++++|++|++|.-=+.|         |+..+.+...+..   .  +++|+ +-| .      .++.+|.+.|
T Consensus       131 a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~gta~~~i~~a~~~g---k--~~~V~v~EsrP~~qG~rl~a~~L~~~g  205 (340)
T d1t5oa_         131 RNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQG---K--EIRVIACETRPLNQGSRLTCWELMEDG  205 (340)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTT---C--CCEEEEECCTTTTHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCchhhhhhhhhHHHHHHHhhhCC---c--cceEEEEeccCccCchHHHHHHHHhcC
Confidence            3466899999999999999875433         7777777776542   1  33333 322 1      2567788899


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+-        +...+|++|+|||.|..+| ...--|...+- .+..+...-+|+++.++||.....  ...+|+|
T Consensus       206 i~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG-~~nkiGT~~~A-~~Ak~~~vP~~V~~~~~k~~~~~~--~~~i~ie  281 (340)
T d1t5oa_         206 IDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVS-VVAKHHNIPFYVAAPKATFDWERT--AKDVVIE  281 (340)
T ss_dssp             CCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCC--GGGCCCC
T ss_pred             CCcEEEechhHHHHhhccccceEeechheeehhc-ccccccHHHHH-HHHHHhCCcEEEEeccccccccCC--ccccccc
Confidence            9987653        1224999999999999887 43223333332 233455678999999999964443  3578887


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      -.|
T Consensus       282 ~~~  284 (340)
T d1t5oa_         282 ERP  284 (340)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            665

>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Probable methylthioribose-1-phosphate isomerase TM0911
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=0.0001  Score=65.88  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECCCh---------hHHHHHHHHHhHHhcCCCCCEEEECC-cH-------HHHHHHHhCC
Q 024953           33 LKKIAAYKAVEFVESGMVLGLGTGS---------TAKHAVDRIGELLRQGKLTNIVGIPT-SK-------KTHEQAVSLG   95 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~dg~~I~LgsGS---------T~~~la~~L~~~~~~~~l~~itvVTn-Sl-------~~a~~l~~~g   95 (260)
                      ..++|++.++++|++|++|.=-+.|         |++.+++...+.   +  ++++|+.. |-       -++.+|.+.|
T Consensus       130 ~~~~Ig~~g~~lI~~g~~ILThcnsg~lAt~~~gta~~~~~~a~~~---g--~~~~v~v~EsrP~~qG~~lta~~L~~~g  204 (340)
T d1t9ka_         130 VNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLTAWELMKDG  204 (340)
T ss_dssp             HHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCccceeeechhhhhHHHHHhhc---C--ceEEEEEecCCCCCccHHHHHHHHHhcC
Confidence            3578999999999999999865544         677777776543   2  14544332 21       2455788889


Q ss_pred             CcEEEcC--------CCccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCCccccEE
Q 024953           96 IPLSDLD--------SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE  167 (260)
Q Consensus        96 i~v~~l~--------~~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~~~lPvE  167 (260)
                      +++..+-        ..-.+|++++|||.|..+|....--|...+- .+..+...-+|++|.++||..+.-. +..+|+|
T Consensus       205 i~~t~I~Dsa~~~~m~~~~vd~VivGad~v~~nG~v~nkiGT~~~A-~~A~~~~vP~~V~a~~~k~~~~~~~-~~~~~ie  282 (340)
T d1t9ka_         205 IEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRS-GEEIPIE  282 (340)
T ss_dssp             CEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSS-GGGSCCC
T ss_pred             CceEEEecchhhhhhhhcccceEEecccccccCCCEEEcccHHHHH-HHHHhcCCcEEEEeeccCcCCCCCC-cCccccc
Confidence            9887553        1225999999999999999877555544442 2233556789999999999765432 3568887


Q ss_pred             Eec
Q 024953          168 VVP  170 (260)
Q Consensus       168 V~p  170 (260)
                      -.+
T Consensus       283 ~r~  285 (340)
T d1t9ka_         283 ERR  285 (340)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            765

>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetate:CoA transferase alpha
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=9.4e-05  Score=61.71  Aligned_cols=107  Identities=20%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             HHHHHhcCcCCCEEEECCC---hhHHHHHHHHHhHHhcCCCCCEEEECCcH----------------------------H
Q 024953           38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTSK----------------------------K   86 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsG---ST~~~la~~L~~~~~~~~l~~itvVTnSl----------------------------~   86 (260)
                      +++|+++|+|||+|++|+-   -+-..++++|.++..    ++++++.++.                            .
T Consensus         8 ~~eAv~~IkdGd~V~~gGf~~~g~P~al~~aL~~~~~----k~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (219)
T d1k6da_           8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGV----RDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPE   83 (219)
T ss_dssp             HHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHHTC----CSEEEECSBCCCTTSTTHHHHHTTCEEEEEESBCTTCHH
T ss_pred             HHHHHhhCCCCCEEEEcCccCcCCHHHHHHHHHHhCc----CCceeeecCCCcCccchhhhhhcccccceeccccccChh
Confidence            6778999999999999732   235788888876521    4788876542                            2


Q ss_pred             HHHHHHhCCCcEEEcC---------------------------------------------CCccccEEEEccCcccCCC
Q 024953           87 THEQAVSLGIPLSDLD---------------------------------------------SYPVVDLAIDGADEVDPFM  121 (260)
Q Consensus        87 ~a~~l~~~gi~v~~l~---------------------------------------------~~~~~D~af~GadgId~~~  121 (260)
                      ......+..+....+.                                             ...++|+||+-+...|.+|
T Consensus        84 ~~~~~~~g~ie~~~~~~g~~~~~~ra~a~g~p~~~~~~~~Gt~~~~~~~~~~~~g~~~~~~~a~~~DVAiI~a~~aD~~G  163 (219)
T d1k6da_          84 TGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLG  163 (219)
T ss_dssp             HHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEEEETTC
T ss_pred             HHHHhhcCCceEEEccchHHHHHHHHhhCCCCceeeeccccceeccCCcccccCCCceeeeecccCCEEEEEeecCCCCC
Confidence            2222222222222210                                             1247999999999999999


Q ss_pred             CcccCcchhHHHHHHHHHhcCcEEEEEe
Q 024953          122 NLVKGRGGSLLREKMVEGACKKFVVIVD  149 (260)
Q Consensus       122 ~~i~~~~~a~~kekii~~~A~~~IlLaD  149 (260)
                      ++...++..... ..++.+|+++|+-++
T Consensus       164 N~~~~~~~~~~~-~~~a~Aa~~VIv~ve  190 (219)
T d1k6da_         164 NLTYQLSARNFN-PLIALAADITLVEPD  190 (219)
T ss_dssp             CEECCHHHHTTH-HHHHHHEEEEEEEEE
T ss_pred             ceeecccccccH-HHHHHhCCCEEEEEe
Confidence            987654332333 335566787766665

>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.94  E-value=0.003  Score=52.56  Aligned_cols=115  Identities=17%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCcCCCEEEECC--Ch-hHHHHHHHHHhHHhcCCCCCEEEECCcH---HHHHHHHhCC-C----------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGT--GS-TAKHAVDRIGELLRQGKLTNIVGIPTSK---KTHEQAVSLG-I----------   96 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~Lgs--GS-T~~~la~~L~~~~~~~~l~~itvVTnSl---~~a~~l~~~g-i----------   96 (260)
                      |.-=|++|+++|++||+|++|.  |. +-..|.++|.++.+...+ .++.+++..   .....+.+.+ +          
T Consensus        12 Kl~saeeAv~~Ik~G~~V~~gGf~~ag~P~~l~~aLa~r~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   90 (221)
T d2g39a1          12 KVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPL-RISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS   90 (221)
T ss_dssp             GBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCC-CEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH
T ss_pred             hCCCHHHHHHhCCCcCEEEECCCCCCCCcHHHHHHHHHHHhcCCc-eEEEEeccccCccccccccccCceeeeeccccCH
Confidence            4445889999999999999974  32 555677888766433333 466666532   1222232221 1          


Q ss_pred             -----------cEEEc---------C-C-CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCC
Q 024953           97 -----------PLSDL---------D-S-YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES  151 (260)
Q Consensus        97 -----------~v~~l---------~-~-~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~s  151 (260)
                                 ..+..         . . ...+|+|++-+...|.+|++..+..-...+ . +.++|+++|+=+...
T Consensus        91 ~~Rk~i~~G~~~~~p~~ls~~~~~~r~g~~~~iDVaii~vs~~De~G~~~~g~s~~~~~-~-~~~~A~~VIvEVN~~  165 (221)
T d2g39a1          91 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNSA-S-FAIFAKQVIVEINLA  165 (221)
T ss_dssp             HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTHH-H-HHHHSSEEEEEEETT
T ss_pred             HHHHHHHCCCeEEEeccHHHHHHHHHhcCCCCCcEEEEEEecCCCCeeEEeecccchHH-H-HHHhCCEEEEEECCC
Confidence                       11110         0 1 226999999999999999887664433333 3 345789988887654

>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Succinate:CoA transferase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.66  E-value=0.0029  Score=53.57  Aligned_cols=43  Identities=12%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             HHHHHhcCcCCCEEEECCChh---HHHHHHHHHhHHhcCCCCCEEEECCc
Q 024953           38 AYKAVEFVESGMVLGLGTGST---AKHAVDRIGELLRQGKLTNIVGIPTS   84 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsGST---~~~la~~L~~~~~~~~l~~itvVTnS   84 (260)
                      |+.|+++|+|||+|++|+-..   -..++++|.++.    .+++|++.++
T Consensus         7 a~EAv~~I~DG~~i~~gGf~~~~~P~ali~el~r~~----~~~Lt~i~~~   52 (242)
T d1ooya2           7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTG----VKELTAVSNN   52 (242)
T ss_dssp             HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHC----CCSEEEEESS
T ss_pred             HHHHHhcCCCcCEEEECCccCcCCHHHHHHHHHHhC----CCCCEEEecC
Confidence            677889999999999986433   377888886542    2488888654

>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Initiation factor 2b
species: Leishmania major [TaxId: 5664]

Probab=96.44  E-value=0.0055  Score=54.85  Aligned_cols=129  Identities=15%  Similarity=0.014  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcC--------cCCCEEEECCC---------hhHHHHHHHHHhHHhcCCCCCEEEE-CCcH-------HHHH
Q 024953           35 KIAAYKAVEFV--------ESGMVLGLGTG---------STAKHAVDRIGELLRQGKLTNIVGI-PTSK-------KTHE   89 (260)
Q Consensus        35 ~~IA~~Aa~lI--------~dg~~I~LgsG---------ST~~~la~~L~~~~~~~~l~~itvV-TnSl-------~~a~   89 (260)
                      ++|++..++++        ++|++|.--+.         +|+..+.+...+.   +  ++++|+ +-|-       .++.
T Consensus       148 ~~Ig~~Ga~li~e~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~---g--k~~~V~v~EtRP~~qG~rlta~  222 (374)
T d2a0ua1         148 EGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD---G--KLERVYACETRPWNQGARLTVY  222 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHT---T--CEEEEEEECCTTTTHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCceeEeeccCcceEeeccchhhHHhHHHHHc---C--CccEEEEecccccccchHHHHH
Confidence            34566666666        67777776322         3556666666543   2  134443 3221       2567


Q ss_pred             HHHhCCCcEEEcCC--------CccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeCCCcccCCCCCC
Q 024953           90 QAVSLGIPLSDLDS--------YPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSG  161 (260)
Q Consensus        90 ~l~~~gi~v~~l~~--------~~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~sKf~~~lg~~~  161 (260)
                      +|.+.|+++..+..        .-.+|++|+|||.|..+|....--|...+- .+......-+|+++.++||..+... +
T Consensus       223 ~L~~~gi~~t~i~Dsa~~~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A-~~A~~~~vP~~v~a~~~k~~~~~~~-~  300 (374)
T d2a0ua1         223 ECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKTAS-G  300 (374)
T ss_dssp             HHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCCS-G
T ss_pred             HHHhccCCcEEEeccchhhhhhccceeEEEecceEEEecCCEEeccchHHHH-HHHHHcCCCEEEEecccccCcCCCC-C
Confidence            88889998875531        125999999999999999876554544442 2223456789999999999766443 3


Q ss_pred             ccccEEEec
Q 024953          162 LAMPVEVVP  170 (260)
Q Consensus       162 ~~lPvEV~p  170 (260)
                      ..+|+|-.+
T Consensus       301 ~~i~ie~r~  309 (374)
T d2a0ua1         301 NHVEIEERE  309 (374)
T ss_dssp             GGSCCCBCC
T ss_pred             CcccccCCC
Confidence            578887664

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.42  E-value=0.002  Score=55.06  Aligned_cols=114  Identities=15%  Similarity=0.238  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcH-----------HHHH-HHHhCCCcEE--
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSK-----------KTHE-QAVSLGIPLS--   99 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl-----------~~a~-~l~~~gi~v~--   99 (260)
                      ++.+|..||+.++||++|++|.|.-+  ++-.|+++..   .++++.++-+=           .... .+.. +...+  
T Consensus         8 ~E~ma~~aArel~dg~~v~~GiGiP~--~a~~lA~~~~---~pd~~l~~e~G~~g~~p~~~~~s~~d~~~~~-~~~~~~~   81 (260)
T d1poib_           8 KEMQAVTIAKQIKNGQVVTVGTGLPL--IGASVAKRVY---APDCHIIVESGLMDCSPVEVPRSVGDLRFMA-HCGCIWP   81 (260)
T ss_dssp             HHHHHHHHHTTCCTTCEEECCSSHHH--HHHHHHHHTT---CTTCEEEETTTEEEECCSSCCSSTTCHHHHT-SEEEECC
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCcHHH--HHHHHHHhhc---CCCeEEEECCcccCCCCCCCCccccchhhhc-ccccccC
Confidence            67799999999999999999999543  3334543311   12455433210           0000 0111 00000  


Q ss_pred             ----------EcCCCccccEEEEccCcccCCCCc--------------ccCcchhHHHHHHHHHhcCcEEEEEeCC--Cc
Q 024953          100 ----------DLDSYPVVDLAIDGADEVDPFMNL--------------VKGRGGSLLREKMVEGACKKFVVIVDES--KL  153 (260)
Q Consensus       100 ----------~l~~~~~~D~af~GadgId~~~~~--------------i~~~~~a~~kekii~~~A~~~IlLaD~s--Kf  153 (260)
                                .+-+.-++|++|+|+-+||..|+.              ..|.+++.-    +.+.++++ ++..|+  ||
T Consensus        82 ~~~~~~~~~F~~~~~G~~d~~fLG~~QVD~~GNvN~s~iG~~~~p~~rl~G~GGa~d----i~~~a~~i-i~~~h~~r~f  156 (260)
T d1poib_          82 NVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTI-IMMQHEKRRF  156 (260)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEE-EECCCCTTTB
T ss_pred             ccccchHHHHHHHhcCCcceEEecccccCcccceeecccccccCCCccccCCCccch----hhhcCceE-EEeccCcccc
Confidence                      011234899999999999998864              235555553    24567765 566776  57


Q ss_pred             ccCCC
Q 024953          154 VPHLG  158 (260)
Q Consensus       154 ~~~lg  158 (260)
                      ++++.
T Consensus       157 V~~vd  161 (260)
T d1poib_         157 MNKID  161 (260)
T ss_dssp             CSSCS
T ss_pred             ccccc
Confidence            66653

>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative enzyme YdiF N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.024  Score=48.51  Aligned_cols=47  Identities=15%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             HHHHHhcCcCCCEEEECCCh----hHHHHHHHHHhHHh-cCCCCCEEEECCc
Q 024953           38 AYKAVEFVESGMVLGLGTGS----TAKHAVDRIGELLR-QGKLTNIVGIPTS   84 (260)
Q Consensus        38 A~~Aa~lI~dg~~I~LgsGS----T~~~la~~L~~~~~-~~~l~~itvVTnS   84 (260)
                      +++|+++|+|||+|++|+..    +...++++|.++.+ .+.-+|+|+|.++
T Consensus        15 ~~eAv~~I~DG~ti~igGf~~~~~~P~~li~al~~r~~~~~~~kdLtli~~~   66 (273)
T d2ahua2          15 AQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPT   66 (273)
T ss_dssp             HHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESS
T ss_pred             HHHHHhcCCCCCEEEEccccCCCcCHHHHHHHHHHHHHhcCCCCccEEEecc
Confidence            67788999999999997643    24578888876432 1223489998654

>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Putative enzyme YdiF C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.022  Score=47.89  Aligned_cols=109  Identities=18%  Similarity=0.175  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhH--HHHHHHHHhHHhcCCCCCEEE------ECCcHHHHHHH-HhCCCcEE-E---
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTA--KHAVDRIGELLRQGKLTNIVG------IPTSKKTHEQA-VSLGIPLS-D---  100 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~--~~la~~L~~~~~~~~l~~itv------VTnSl~~a~~l-~~~gi~v~-~---  100 (260)
                      ++.||++|+.+|+||++|.+|.|--.  ..++++....      .+++.      +.+-....... ...+...+ .   
T Consensus         6 ~~~Ia~raA~el~dG~~v~lGiGiP~~v~~~a~~~~~~------~~v~~~~E~G~~gg~~~~~~~~~~~~~~~~~~~~~~   79 (247)
T d2ahua1           6 RKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCA------DDFILTVETGPIGGITSQGIAFGANVNTRAILDMTS   79 (247)
T ss_dssp             HHHHHHHHHTTCCTTCEEEECSSTTTTHHHHHHHHTCG------GGSEEBCTTSEESCBCC-----CCCBSCSEECCHHH
T ss_pred             HHHHHHHHHHhCCCCCEEEEcccHHHHHHHHHHhcCCC------CceeEeecCcccCCcccccccceeeecceeEecccc
Confidence            67899999999999999999999431  2223322111      02222      11111100000 00000111 0   


Q ss_pred             ---cCCCccccEEEEccCcccCCCCc--------ccCcchhHHHHHHHHHhcCcEEEEEeCCC
Q 024953          101 ---LDSYPVVDLAIDGADEVDPFMNL--------VKGRGGSLLREKMVEGACKKFVVIVDESK  152 (260)
Q Consensus       101 ---l~~~~~~D~af~GadgId~~~~~--------i~~~~~a~~kekii~~~A~~~IlLaD~sK  152 (260)
                         +-...++|++|+|+-+||..|+.        ..+.|++.-    +.+.|++++++..|++
T Consensus        80 ~f~~~~~g~~dv~~lga~QVD~~GnvN~s~iG~~~~G~GG~~D----~~~gA~~~i~~~~~~~  138 (247)
T d2ahua1          80 QFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFID----ISATSKKIIFCGTLTA  138 (247)
T ss_dssp             HHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHH----HHTTCSEEEEECCSEE
T ss_pred             eeeeEecCCeeEEEechhhcCcccccchhccCCcccCccccch----hhcCcceEEEcccccc
Confidence               01234799999999999987653        233333322    2467889888887653

>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Transcriptional regulator SP0247
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.57  E-value=0.0059  Score=51.76  Aligned_cols=55  Identities=22%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             CCCCC-ChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           24 PPVIL-TQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        24 ~~~m~-~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      |+... +.+..++.+|+.|++    ++++|++|+++.|+|+..++++|...    ..+++++|+
T Consensus        26 p~~~~~~~~~~~~~l~~~aA~~l~~~l~~~~~iGvswG~Tl~~~~~~l~~~----~~~~~~vv~   85 (262)
T d2gnpa1          26 PNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK----SVRNVHFYP   85 (262)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC----CCSSCEEEE
T ss_pred             cCCcccChHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHhCcc----ccCCceEEe
Confidence            44443 344557778888876    55899999999999999999999743    124677765

>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Glutaconate:CoA transferase alpha
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.38  E-value=0.048  Score=47.49  Aligned_cols=44  Identities=27%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             ccccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEeC
Q 024953          105 PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus       105 ~~~D~af~GadgId~~~~~i~~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                      .++|+||+-+...|..||+...+. .... ..++.+|+++|+-++.
T Consensus       170 l~~DvAlIha~~AD~~GNv~~~g~-~~~~-~~~A~Aa~~vIV~vE~  213 (317)
T d1poia_         170 PQVDVAIIHAQQASPDGTVRIWGG-KFQD-VDIAEAAKYTIVTCEE  213 (317)
T ss_dssp             CCCSEEEEEEEEECTTCCEECCSC-CTTH-HHHHHHSSEEEEEEEE
T ss_pred             CCCCEEEEEecccCCCCcEEEEcc-CCCC-HHHHhcCCceEEEEEE
Confidence            479999999999999999754322 2222 3345678887766653

>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Sor-operon regulator SorC
species: Shigella flexneri [TaxId: 623]

Probab=95.15  E-value=0.0073  Score=50.67  Aligned_cols=42  Identities=12%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             CCChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHh
Q 024953           27 ILTQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGE   68 (260)
Q Consensus        27 m~~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~   68 (260)
                      -.+.++.++++|+.|++    ++++|++|+++.|+|+..++++|+.
T Consensus        25 ~~~~~~~~~~lg~aAA~~l~~~l~~~~~igvswG~T~~~~~~~l~~   70 (255)
T d3efba1          25 DEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQ   70 (255)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCC
T ss_pred             CCcchHHHHHHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHhcc
Confidence            34455667778888876    5589999999999999999999964

>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Central glycolytic gene regulator CggR
species: Bacillus subtilis [TaxId: 1423]

Probab=95.10  E-value=0.006  Score=51.22  Aligned_cols=56  Identities=13%  Similarity=0.063  Sum_probs=39.8

Q ss_pred             CCCCCChHHHHHHHHHHHHh----cCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           24 PPVILTQDELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        24 ~~~m~~~~~~K~~IA~~Aa~----lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      |+.-.+.++.++.+|+.|++    +++++++|+++.|+|+..++++|....+   .+++++|+
T Consensus        26 ~~~~~~~~~~~~~l~~aaA~~L~~~l~~~~~igvswG~T~~~~~~~l~~~~~---~~~~~~V~   85 (250)
T d2okga1          26 SGDSDQSPWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSK---NRELLFVP   85 (250)
T ss_dssp             SSCTTTCTHHHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCTT---CCEEEEEE
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHHHhhcccc---CCCeEEEE
Confidence            33333444557778888876    5589999999999999999999953211   13577774

>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.05  E-value=0.047  Score=45.08  Aligned_cols=98  Identities=16%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             CcCCCEEEEC-----CChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHH-----HHHHhCCC------------------
Q 024953           45 VESGMVLGLG-----TGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH-----EQAVSLGI------------------   96 (260)
Q Consensus        45 I~dg~~I~Lg-----sGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a-----~~l~~~gi------------------   96 (260)
                      ++|||||-+-     .=-.+..+.+.+.+.    +++++|+.++|+.-.     ...++.-+                  
T Consensus        55 lkDGMTiSFHHh~R~GD~v~n~Vm~~ia~m----GiKdLtia~SSl~~~h~plve~I~~GvVt~I~tsg~rG~lgeaiS~  130 (236)
T d1xr4a1          55 LKNGMTISFHHAFRGGDKVVNMVMAKLAEM----GFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEEISA  130 (236)
T ss_dssp             CCTTCEEEECCTTGGGCCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHHHHHHHH
T ss_pred             CcCCCEEEeehhccCccHHHHHHHHHHHHc----CcCccEEecccccchhHHHHHHHhcCeeeEEEecCcCchHHHHHhc
Confidence            7999999984     334555666666654    467999999998532     22332211                  


Q ss_pred             -----cEEEc----------CCCccccEEEEccCcccCCCCcc--c------CcchhHHHHHHHHHhcCcEEEEEeC
Q 024953           97 -----PLSDL----------DSYPVVDLAIDGADEVDPFMNLV--K------GRGGSLLREKMVEGACKKFVVIVDE  150 (260)
Q Consensus        97 -----~v~~l----------~~~~~~D~af~GadgId~~~~~i--~------~~~~a~~kekii~~~A~~~IlLaD~  150 (260)
                           +++.-          ....++|+||+|+-..|.-|++-  .      ..|.+++-    ++.|+++|+++|.
T Consensus       131 G~l~~PviirSHGGRaraIesGe~~IDVAFigaP~~D~~GN~nG~~G~saCGsLGYa~vD----A~yA~~VV~vTD~  203 (236)
T d1xr4a1         131 GLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVD----AQYAKCVVLLTEE  203 (236)
T ss_dssp             TCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHH----HHHCSEEEEEESC
T ss_pred             CCCCCCeEEecCCChhhhhhcCCceeEEEEEcCCccccccCcCCCcCCcccccccchhhh----HHhhCcEEEEecc
Confidence                 11110          13569999999999999866542  1      12344444    4679999999985

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.86  E-value=0.11  Score=43.99  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhcCc------CCCEEEECCChhHHHHHHHHHhHH
Q 024953           33 LKKIAAYKAVEFVE------SGMVLGLGTGSTAKHAVDRIGELL   70 (260)
Q Consensus        33 ~K~~IA~~Aa~lI~------dg~~I~LgsGST~~~la~~L~~~~   70 (260)
                      ..++||+.|+++|+      ||++|=+|.|+.-..++.+|.++.
T Consensus        10 ~~~~Ia~~~A~~I~~~~~i~DG~tlQlGiG~ip~AV~~~L~~~~   53 (269)
T d1xr4a2          10 RELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKM   53 (269)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCEEEeCcCHHHHHHHHHhHhhc
Confidence            35789999999885      999999999999999999998763

>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Transcriptional regulator PSPTO2395
species: Pseudomonas syringae [TaxId: 317]

Probab=93.83  E-value=0.028  Score=47.35  Aligned_cols=53  Identities=15%  Similarity=0.146  Sum_probs=37.6

Q ss_pred             CChHHHHHHHHHHHHh----cCcCCCEEEE-CCChhHHHHHHHHHhHHhcCCCCCEEEEC
Q 024953           28 LTQDELKKIAAYKAVE----FVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGIP   82 (260)
Q Consensus        28 ~~~~~~K~~IA~~Aa~----lI~dg~~I~L-gsGST~~~la~~L~~~~~~~~l~~itvVT   82 (260)
                      .+.+..++++|+.|++    ++++|++|++ +.|+|+..++++|....  ....++++|+
T Consensus        29 ~~~~~~~~~v~~~aA~~L~~~l~~~~~igv~~wG~Tl~~~~~~l~~~~--~~~~~~~vV~   86 (258)
T d2r5fa1          29 DDEESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQP--GKQSAQEVVQ   86 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC----CCCCCSEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHhcccCCEEEEEccChHHHHHHHHhcccc--ccCCCceEEe
Confidence            4455567778888877    4589999999 78999999999985431  1112567765

>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Transcriptional regulator EF1965
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.09  E-value=0.027  Score=46.60  Aligned_cols=45  Identities=11%  Similarity=0.069  Sum_probs=34.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhc----CcCCC-EEEECCChhHHHHHHHHHh
Q 024953           24 PPVILTQDELKKIAAYKAVEF----VESGM-VLGLGTGSTAKHAVDRIGE   68 (260)
Q Consensus        24 ~~~m~~~~~~K~~IA~~Aa~l----I~dg~-~I~LgsGST~~~la~~L~~   68 (260)
                      |+.-.+.++.++++|+.|+++    +++|+ +|+++.|+|...++++|..
T Consensus        20 p~~~~~~~~~~~~l~~~aa~~L~~~l~~~~~~ig~s~G~T~~~~~~~l~~   69 (247)
T d2o0ma1          20 AGDSDIQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGS   69 (247)
T ss_dssp             SSCTTTCTHHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCC
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHHHHhcc
Confidence            333344445677888888875    46787 7999999999999999964

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.17  E-value=0.063  Score=43.76  Aligned_cols=108  Identities=25%  Similarity=0.242  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHH-----------HHHhCCC------
Q 024953           34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----------QAVSLGI------   96 (260)
Q Consensus        34 K~~IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~-----------~l~~~gi------   96 (260)
                      +++||+.|+++|+||+++.+|.| .-...+..|.+.      +++.+.+-+-....           .....+.      
T Consensus         3 ~e~Ia~~aA~~i~DG~~v~~GiG-iP~~va~~l~~~------~~~~l~~E~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (221)
T d1ooya1           3 RERIIKRAALEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVL   75 (221)
T ss_dssp             HHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGSCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSCBCCEE
T ss_pred             HHHHHHHHHHhCCCCCEEEECcC-HHHHHHHHhhhc------CcceEEecCceeecccccccccccccccchhhhhcccc
Confidence            67899999999999999999999 555555555432      24555443211000           0000000      


Q ss_pred             c-EEEc--------CCCccccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhcCcEEEEEeCCC
Q 024953           97 P-LSDL--------DSYPVVDLAIDGADEVDPFMNL---------VKGRGGSLLREKMVEGACKKFVVIVDESK  152 (260)
Q Consensus        97 ~-v~~l--------~~~~~~D~af~GadgId~~~~~---------i~~~~~a~~kekii~~~A~~~IlLaD~sK  152 (260)
                      + ....        ....+.|++|+|+-++|..|+.         ..|.+++.-    +.+.+++.++++-++.
T Consensus        76 ~~~~~~~~~~~~~~~~~g~~dva~~ga~qvD~~G~in~~~~p~~~~~G~GG~~d----~~~~a~~~~~~~~~~~  145 (221)
T d1ooya1          76 PGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEHS  145 (221)
T ss_dssp             EEEEECCHHHHHHHHHTTCSSEEEECCSEEETTCCEECSCCSSSCCCCCTTHHH----HTCCTTSEEEEECCSB
T ss_pred             chhhhcccccchhhhhcCCcceEEechhhhcchheeeeeecCCccccCcccchh----hhhccCceEEEEeecc
Confidence            0 1111        1234799999999999987642         233334321    2356777766665443

>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Lrp/AsnC-like transcriptional regulator C-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.52  E-value=0.17  Score=34.31  Aligned_cols=63  Identities=17%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             ccEEEecCcHHHHHHHHHHhhhhCCCceEEeecCCCceEeCCCCEEEEeeCCCCCCCHHH-HHHHhcCCCcEEee
Q 024953          164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKV-ASDNILRLAGVVEH  237 (260)
Q Consensus       164 lPvEV~p~~~~~v~~~l~~~~~~~g~~~~~R~~~~~p~vTd~GN~IiD~~f~~~~~~~~~-l~~~l~~i~GVve~  237 (260)
                      +-|++.|..+..+.++|.++       ++++.   -..+|-+..+++-+.+.. ..+..+ +.+.|.++|||..+
T Consensus         7 i~i~v~~~~~~~v~~~l~~~-------peV~~---~~~vtG~~D~~~~v~~~d-~~~l~~~l~~~i~~~~gV~~~   70 (80)
T d1i1ga2           7 TGVDTKPEKLFEVAEKLKEY-------DFVKE---LYLSSGDHMIMAVIWAKD-GEDLAEIISNKIGKIEGVTKV   70 (80)
T ss_dssp             EEEEECGGGHHHHHHHHHHS-------TTEEE---ECCCSSSSSEEEEEEESS-HHHHHHHHHHTTTTSTTEEEE
T ss_pred             EEEEECcCcHHHHHHHHHcC-------CCEeE---EEEECCCCCEEEEEEECC-HHHHHHHHHhhhccCCCEEEE
Confidence            45788899999999999996       33442   234555779999998764 666666 44678899999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=86.70  E-value=2.8  Score=31.76  Aligned_cols=104  Identities=15%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             HHHHHHhcCcCCCEEEECCChhHHHHHHHHHhHHhcCCCCCEEEECCcHHHHHH-HHhCCCcEEEcCCC----ccccEEE
Q 024953           37 AAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ-AVSLGIPLSDLDSY----PVVDLAI  111 (260)
Q Consensus        37 IA~~Aa~lI~dg~~I~LgsGST~~~la~~L~~~~~~~~l~~itvVTnSl~~a~~-l~~~gi~v~~l~~~----~~~D~af  111 (260)
                      +|++-..-+++-.++.+|+|.+...++++|..+   + .++++++.-+..-+.. +.+.+.....+.+.    ..+|+.|
T Consensus        14 la~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~---g-~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi   89 (159)
T d1gpja2          14 LAERELGSLHDKTVLVVGAGEMGKTVAKSLVDR---G-VRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVV   89 (159)
T ss_dssp             HHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHH---C-CSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEE
T ss_pred             HHHHHhCCcccCeEEEECCCHHHHHHHHHHHhc---C-CcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEE
Confidence            445445556777788999999999999999865   1 2368888888766654 45667666655421    2699988


Q ss_pred             EccCcccCCCCcccCcchhHHHHHHHHHh-cCcEEEEEeCC
Q 024953          112 DGADEVDPFMNLVKGRGGSLLREKMVEGA-CKKFVVIVDES  151 (260)
Q Consensus       112 ~GadgId~~~~~i~~~~~a~~kekii~~~-A~~~IlLaD~s  151 (260)
                      .++..-.  . ++   +..++++ .+..+ .++-.++.|-+
T Consensus        90 ~atss~~--~-ii---~~~~i~~-~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          90 SATAAPH--P-VI---HVDDVRE-ALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             ECCSSSS--C-CB---CHHHHHH-HHHHCSSCCCEEEEECC
T ss_pred             EecCCCC--c-cc---cHhhhHH-HHHhcccCCCeEEEeec
Confidence            8765322  1 11   2334443 33322 23446788853