Citrus Sinensis ID: 024955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEcccccccccEEEEEEEcccccccccccccccEEEcccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEEcccccEEEEccccEEEEEEEccccEEccccccccEEEEEEEccccEEEEEEEcHHHHHHHHHHHcccccccccHHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEEcccEEEEEEEcccHHHHHHHHHHccccEEEccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccHHHHcccccccccccccEcHccHHHHHHccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccHHHcccEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEHcc
Coil and Loop (DISEMBL)
mgslqgpvfcpavrarqgglyntvpstgpvmkarffrselwgfkgltaVKTKVGVFTrqqnarkckivqctfssssngngsmaenfnendedfvNSSVVEAVevksgadgfmikmrdgrhlrcvhnnpqgghlpdyaphpaIVLKmedgtglllPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTkvgnetecvsfdlrpsdaINIAVRCKVLSTLVGARSFHLNFSLLA
Flexible Loop (DISEMBL)
MGSLQGPVFCPAvrarqgglyntvpstgpvMKARFFRSELWGFKGLTAVKTKVGvftrqqnarkckivqctfssssngngSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Low Complexity Region (SEG)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAenfnendedfVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Disordered region (IsUnstruct)
*******VFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTF*************************VVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSL**
Disordered Region (DISOPRED)
****QGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKT***************************************EDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR**QIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Disordered Region (DISEMBL)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Disordered Region (DISPRO)
***LQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSS**************NDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSFHLNFSLLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q9FWS6	325	Bifunctional nuclease 1 O	yes	no	0.896	0.716	0.742	2e-99
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.923	0.729	0.694	2e-95
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.9	0.72	0.576	2e-75
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.926	0.728	0.516	4e-59
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.926	0.728	0.516	8e-59
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.926	0.728	0.516	9e-59

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  362 bits (929), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/245 (74%), Positives = 203/245 (82%), Gaps = 12/245 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 238 VRCKV 242
           VRCK+
Sbjct: 232 VRCKI 236

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 198/242 (81%), Gaps = 2/242 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct: 59  HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 241 KV 242
           KV
Sbjct: 239 KV 240

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  281 bits (720), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/243 (57%), Positives = 189/243 (77%), Gaps = 9/243 (3%)

Query: 3   SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           +++GP+ C AV   +     + N++  +G +  A  F   +  ++ +T + + +    ++
Sbjct: 2   AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
             A  C     +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60  NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           +LRCVHNN QG ++P+ AP PAIVL++EDG+  LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           +YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235

Query: 240 CKV 242
           CKV
Sbjct: 236 CKV 238

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  228 bits (580), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 176/246 (71%), Gaps = 5/246 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKV 242
           A RCKV
Sbjct: 240 AFRCKV 245

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  227 bits (578), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 176/246 (71%), Gaps = 5/246 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKV 242
           A RCKV
Sbjct: 240 AFRCKV 245

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  226 bits (577), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 176/246 (71%), Gaps = 5/246 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKV 242
           A RCKV
Sbjct: 240 AFRCKV 245

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
224062099	326	predicted protein [Populus trichocarpa]	0.915	0.730	0.830	1e-116
359492154	327	PREDICTED: uncharacterized protein LOC10	0.926	0.737	0.809	1e-114
302142539	355	unnamed protein product [Vitis vinifera]	0.926	0.678	0.809	1e-114
224085706	328	predicted protein [Populus trichocarpa]	0.926	0.734	0.818	1e-113
255538728	327	conserved hypothetical protein [Ricinus	0.919	0.730	0.830	1e-111
449511603	327	PREDICTED: bifunctional nuclease 1-like	0.926	0.737	0.735	1e-103
449460235	327	PREDICTED: bifunctional nuclease 1-like	0.926	0.737	0.735	1e-103
255635435	328	unknown [Glycine max]	0.915	0.725	0.765	1e-103
147842247	964	hypothetical protein VITISV_009514 [Viti	0.857	0.231	0.699	2e-98
297842281	324	hypothetical protein ARALYDRAFT_476684 [	0.888	0.712	0.739	6e-98

>gi|224062099|ref|XP_002300754.1| predicted protein [Populus trichocarpa] gi|222842480|gb|EEE80027.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/242 (83%), Positives = 220/242 (90%), Gaps = 4/242 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CP VRA+Q G +   P TGP++KAR  RSELWGFKG    KTKVG+ +RQ 
Sbjct: 1   MVSLQGPVICPTVRAKQAGKH-AFPMTGPLVKARLVRSELWGFKGY---KTKVGLTSRQL 56

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C  VQC+ SSSS+GNGS AENFNENDED+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 57  KARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 116

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 117 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 176

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M+EKMG+EV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 177 YQVVKDMVEKMGFEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 236

Query: 241 KV 242
           KV
Sbjct: 237 KV 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492154|ref|XP_003634371.1| PREDICTED: uncharacterized protein LOC100855103 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/242 (80%), Positives = 216/242 (89%), Gaps = 1/242 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 180 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 239

Query: 241 KV 242
           KV
Sbjct: 240 KV 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142539|emb|CBI19742.3| unnamed protein product [Vitis vinifera]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/242 (80%), Positives = 216/242 (89%), Gaps = 1/242 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 29  MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 87

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 88  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 147

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 148 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 207

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 208 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 267

Query: 241 KV 242
           KV
Sbjct: 268 KV 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085706|ref|XP_002307674.1| predicted protein [Populus trichocarpa] gi|222857123|gb|EEE94670.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/242 (81%), Positives = 218/242 (90%), Gaps = 1/242 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV  PAVRA+Q G Y + P TGP++K    RSEL GFKGL+  K+KV + +RQ 
Sbjct: 1   MGSLQGPVIYPAVRAKQAGTY-SFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C +VQC+ SSSS+GNGS AENFNEN  D+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 60  KARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPD APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 120 LRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEM+EKMGYEV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMVEKMGYEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 239

Query: 241 KV 242
           KV
Sbjct: 240 KV 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538728|ref|XP_002510429.1| conserved hypothetical protein [Ricinus communis] gi|223551130|gb|EEF52616.1| conserved hypothetical protein [Ricinus communis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/242 (83%), Positives = 215/242 (88%), Gaps = 3/242 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CPAVRA+Q G Y T+P   P+ KAR  RS LW FKG++  KTK+  F+ QQ
Sbjct: 1   MTSLQGPVICPAVRAKQAGTY-TLPLNVPLFKARLVRSGLWRFKGISDYKTKLTGFSPQQ 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR   + QC  SSSSNGNG+ AENFN NDED+V+SSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  -ARNTTL-QCCLSSSSNGNGNTAENFNVNDEDYVHSSVVEAVEVKSGADGFMIKMRDGRH 117

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           +RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 118 VRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 177

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET+CVSFDLRPSDAINIAVRC
Sbjct: 178 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETQCVSFDLRPSDAINIAVRC 237

Query: 241 KV 242
           KV
Sbjct: 238 KV 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511603|ref|XP_004164003.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 208/242 (85%), Gaps = 1/242 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KV 242
           +V
Sbjct: 240 QV 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460235|ref|XP_004147851.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 208/242 (85%), Gaps = 1/242 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KV 242
           +V
Sbjct: 240 QV 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635435|gb|ACU18070.1| unknown [Glycine max]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/243 (76%), Positives = 204/243 (83%), Gaps = 5/243 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPV-MKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           M S+QGPV CP+VRA+Q G + ++P  G V M  R  RSE WG  G    K K G  +  
Sbjct: 1   MSSVQGPVVCPSVRAKQVG-FCSIPMIGAVKMNVRRIRSEFWGLNG---AKAKPGFLSCH 56

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
            N RKCK V CTF+S SN +GS A+NFNE DED+V SSV+EAVEVKSGADGF+IKMRDGR
Sbjct: 57  INTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGR 116

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 117 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPT 176

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           LYQVVKEMI+KMGYEV+ VRVT+RVHEAYFAQLYLTKVGN+ E VSFDLRPSDAINIAVR
Sbjct: 177 LYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAVR 236

Query: 240 CKV 242
           CKV
Sbjct: 237 CKV 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842247|emb|CAN76215.1| hypothetical protein VITISV_009514 [Vitis vinifera]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/256 (69%), Positives = 198/256 (77%), Gaps = 33/256 (12%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGXVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPI                  IARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPI------------------IARPTL 161

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK--------------VGNETECVSF 226
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTK              VGNE E VSF
Sbjct: 162 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKAYSCCTPCSLIDCLVGNEKESVSF 221

Query: 227 DLRPSDAINIAVRCKV 242
           DLRPSDAINIAVRCKV
Sbjct: 222 DLRPSDAINIAVRCKV 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842281|ref|XP_002889022.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata] gi|297334863|gb|EFH65281.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 182/246 (73%), Positives = 201/246 (81%), Gaps = 15/246 (6%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFK--GLTAVKTKVGVFT 57
           M SLQ PV CPA+R RQ G   + V  TG   + +F+ +   GFK  G T +        
Sbjct: 1   MRSLQAPVVCPAIRPRQVGACASLVNYTGLKPRRQFWGNRTKGFKSQGTTTI-------- 52

Query: 58  RQQNARKC-KIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
                R C K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMR
Sbjct: 53  ---TLRLCDKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMR 109

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DGR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIA
Sbjct: 110 DGRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA 169

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQLYL+KVGN +ECVSFDLRPSDAINI
Sbjct: 170 RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLYLSKVGNASECVSFDLRPSDAINI 229

Query: 237 AVRCKV 242
           AVRCK+
Sbjct: 230 AVRCKI 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.9	0.72	0.717	1.9e-83
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.923	0.729	0.657	1.4e-78
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.430	0.329	0.370	1.2e-10

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 175/244 (71%), Positives = 194/244 (79%)

Query:     1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
             M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG +    VK++ G  T  
Sbjct:     1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNR-TKGVKSQ-GT-TTT 52

Query:    60 QNARKC-KIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDG 118
                R C K ++C FSS S+GNGS A          VNSSVVEAVEVKSGADGFM+KMRDG
Sbjct:    53 ITLRLCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDG 112

Query:   119 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARP 178
             R LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARP
Sbjct:   113 RQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARP 172

Query:   179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 238
             T+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIAV
Sbjct:   173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAV 232

Query:   239 RCKV 242
             RCK+
Sbjct:   233 RCKI 236

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 159/242 (65%), Positives = 188/242 (77%)

Query:     1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
             M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct:     1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query:    61 NARKCKIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             + R+ K ++C FSS S+G GS A          V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct:    59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query:   121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
             LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct:   119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query:   181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
             YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct:   179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query:   241 KV 242
             KV
Sbjct:   239 KV 240

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 43/116 (37%), Positives = 64/116 (55%)

Query:   128 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMRNVQIARPTLYQVVK 185
             P G G L  +   P I LK+      LLP+IV +     LL   ++      P  +Q V 
Sbjct:   132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVS 190

Query:   186 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCK 241
              +++K+GYEV++V++T R+   Y+A L L K G + E +  D RPSDAIN+A  C+
Sbjct:   191 AVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQ 245


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      260       250   0.00080  114 3  11 22  0.39    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.41u 0.20s 18.61t   Elapsed:  00:00:01
  Total cpu time:  18.41u 0.20s 18.61t   Elapsed:  00:00:01
  Start:  Sat May 11 09:12:15 2013   End:  Sat May 11 09:12:16 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FWS6	BBD1_ARATH	3, ., 1, ., -, ., -	0.7428	0.8961	0.7169	yes	no
Q6YZM6	BBD2_ORYSJ	3, ., 1, ., -, ., -	0.5761	0.9	0.72	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	1e-14
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	7e-12

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score = 68.7 bits (169), Expect = 1e-14
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 137 APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVR 196
           +  P ++L+ EDG   +LPI +    +  +  A+  V+  RP  + ++K+++E +G +V 
Sbjct: 12  SGAPVVLLRDEDG-ERVLPIWIGPAEAQAIALALEGVEPPRPLTHDLLKDVLEALGAKVE 70

Query: 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKV 242
            V +       ++A+L L   G E      D RPSDAI +A+R   
Sbjct: 71  RVVIDDLKDGTFYARLVLRDGGEEE----IDARPSDAIALALRTGA 112

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 135 DYAPH--PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMG 192
                  P +VL +E G   +LPI +    ++ +  A+  V+  RP  + ++ E+ E++G
Sbjct: 13  FVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELG 72

Query: 193 YEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
             V  V +   +   Y+A L L +   + +    D RPSDAI +A+R
Sbjct: 73  ARVEKVVIDDLIDNTYYATLILEQDDGKIQ---IDARPSDAIALALR 116

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=6.2e-35  Score=241.34  Aligned_cols=116  Identities=26%  Similarity=0.405  Sum_probs=98.4

Q ss_pred             CCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEE
Q 024955          133 LPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQL  212 (260)
Q Consensus       133 Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFyArL  212 (260)
                      ++..+++|+++|++++++ +.|||||+..||.+|+.++.+.+++||+|||||.++++++|.++++|+|++++||+|||+|
T Consensus         8 ~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L   86 (135)
T PF02577_consen    8 VDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARL   86 (135)
T ss_dssp             EETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEE
T ss_pred             EcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEE
Confidence            444556789999999977 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCceeeEEEEecChHHHHHHHHhcCCcEEEecccee
Q 024955          213 YLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSF  252 (260)
Q Consensus       213 ~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~~  252 (260)
                      ++++++   +++++|+||||||+||+|+++||||+++..-
T Consensus        87 ~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~  123 (135)
T PF02577_consen   87 VLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLD  123 (135)
T ss_dssp             EEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHH
T ss_pred             EEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHh
Confidence            999777   6899999999999999999999999998653

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=239.51  Aligned_cols=119  Identities=26%  Similarity=0.413  Sum_probs=108.4

Q ss_pred             CCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 024955          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (260)
Q Consensus       130 ~g~Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFy  209 (260)
                      +-++++-.+.|++++...+++++.|||||+..||.+|+.++++..++||+||||+.++++.+|.+|++|+|++++|+|||
T Consensus        10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy   89 (151)
T COG1259          10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY   89 (151)
T ss_pred             EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence            33455566778777777777778999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCceeeEEEEecChHHHHHHHHhcCCcEEEeccce
Q 024955          210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARS  251 (260)
Q Consensus       210 ArL~L~~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~  251 (260)
                      |+|++++++   ..+.+||||||||+||+|.|+||||.|+..
T Consensus        90 A~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~  128 (151)
T COG1259          90 ATLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVL  128 (151)
T ss_pred             EEEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhh
Confidence            999999988   469999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	3e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 84.0 bits (207), Expect = 3e-20
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 112 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR 171
           M K      ++ +  +            P ++L   +GT  +LPI +       L  AM 
Sbjct: 13  MRKAW----VKTLALDRVSNT-------PVVILG-IEGTNRVLPIWIGACEGHALALAME 60

Query: 172 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL------TKVGNETECVS 225
            ++  RP  + ++  ++E +   V  V +       ++A L +       +   E   + 
Sbjct: 61  KMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALID 120

Query: 226 FDLRPSDAINIAVRCKV 242
            D RPSDAI +AV+   
Sbjct: 121 IDSRPSDAIILAVKTGA 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 38/255 (14%), Positives = 74/255 (29%), Gaps = 65/255 (25%)

Query: 49  VKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGA 108
           +   +          +  +     S          E     +  F+ S +       S  
Sbjct: 51  IDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 109 DGFMIKMRDGRHLRCVHNNPQGGHLPDYA---PHPAIVLKMEDGTGLL-L---PIIVLE- 160
               I+ RD      ++N+ Q      Y      P + L+      LL L     ++++ 
Sbjct: 109 TRMYIEQRDR-----LYNDNQ--VFAKYNVSRLQPYLKLR----QALLELRPAKNVLIDG 157

Query: 161 MP----SVLLMAAMRN--VQIARP------TLYQVVK-----EMIEKMGYEV-------- 195
           +     + + +    +  VQ           L          EM++K+ Y++        
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 196 -RLVRVTKRVHEAYFAQLYLTKVGNETEC------VSFDLRPSDAINIAVRCKVLST--- 245
                +  R+H        L K      C      V  + +  +A N+   CK+L T   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNL--SCKILLTTRF 274

Query: 246 ------LVGARSFHL 254
                 L  A + H+
Sbjct: 275 KQVTDFLSAATTTHI 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=4.1e-39  Score=275.43  Aligned_cols=123  Identities=22%  Similarity=0.303  Sum_probs=112.8

Q ss_pred             CCCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEE
Q 024955          129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY  208 (260)
Q Consensus       129 q~g~Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtF  208 (260)
                      ++.++|+++++|+|+|++++++ +.|||||+..||.+|+.+++|.+++||+|||||.++++++|+++++|+|++++||||
T Consensus        19 ~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtf   97 (164)
T 1vjl_A           19 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF   97 (164)
T ss_dssp             EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred             EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEE
Confidence            5889999999999999999887 799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEE------ecCceeeEEEEecChHHHHHHHHhcCCcEEEecccee
Q 024955          209 FAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVLSTLVGARSF  252 (260)
Q Consensus       209 yArL~L~------~gg~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~~  252 (260)
                      ||+|+++      +++++.+.+++|+|||||||||+|+++||||+++..-
T Consensus        98 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~  147 (164)
T 1vjl_A           98 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVE  147 (164)
T ss_dssp             EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHH
T ss_pred             EEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHh
Confidence            9999999      6653446899999999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	8e-25

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score = 94.2 bits (234), Expect = 8e-25
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 135 DYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYE 194
           D   +  +V+   +GT  +LPI +       L  AM  ++  RP  + ++  ++E +   
Sbjct: 13  DRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEAR 72

Query: 195 VRLVRVTKRVHEAYFAQLYL------TKVGNETECVSFDLRPSDAINIAVRCKV 242
           V  V +       ++A L +       +   E   +  D RPSDAI +AV+   
Sbjct: 73  VDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGA 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.1e-38  Score=263.47  Aligned_cols=121  Identities=22%  Similarity=0.320  Sum_probs=110.5

Q ss_pred             CCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 024955          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (260)
Q Consensus       130 ~g~Ld~~a~~PvIVLke~dg~~r~LPI~Ige~EA~aI~~aL~g~~~~RPlThDLl~eiLe~lG~~V~~V~It~~~dGtFy  209 (260)
                      +-.+|+.+++|+|+|++++++ +.||||||..||.+|+.+++|.+++||+|||||.++++++|++|++|+|+++++||||
T Consensus         9 ~i~~~~~~~~pvvlL~~~~~~-~~LPI~Ig~~EA~~I~~~l~~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~fy   87 (151)
T d1vjla_           9 TLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFY   87 (151)
T ss_dssp             EEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEEEecCCCCcEEEEEECCCC-eEEEEEEChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEEecCCeE
Confidence            445677888999999998876 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC------ceeeEEEEecChHHHHHHHHhcCCcEEEeccce
Q 024955          210 AQLYLTKVG------NETECVSFDLRPSDAINIAVRCKVLSTLVGARS  251 (260)
Q Consensus       210 ArL~L~~gg------~e~e~~~iDaRPSDAIALAlR~kaPI~V~k~~~  251 (260)
                      |+|+|+++.      ++.+.+++||||||||+||+|+++||||+++.+
T Consensus        88 A~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl  135 (151)
T d1vjla_          88 ATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLV  135 (151)
T ss_dssp             EEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHH
T ss_pred             EEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHH
Confidence            999998653      123678999999999999999999999999864