Citrus Sinensis ID: 024969

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
cccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc
cccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccEEEEEcEEEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
MKIEDPEVVDLVNQIEELEHKlfahplnksqdenQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFngtfndldhHQVAALAscfipvdkssEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRgimfsnslyl
MKIEDPEVVDLVNQIEELEHKLfahplnksqdeNQIRCFQRKAEVNHEIQqlkskmrdsqiQKFRDELKNRSRVLKKlghinadgvvqlKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQnecklevnvDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAqavgevnlEKKFAAaseslrrgimfsnslyl
MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
*********DLVNQIEELEHKLFA************************************************RVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDK****INL****************KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA******************
MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQL*********QKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVD***********LAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
*KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRxxxxxxxxxxxxxxxxxxxxxKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q9CZU31040 Superkiller viralicidic a yes no 0.996 0.249 0.448 3e-61
P422851042 Superkiller viralicidic a yes no 0.996 0.248 0.444 1e-60
O142321117 ATP-dependent RNA helicas yes no 0.996 0.231 0.435 1e-54
Q232231026 mRNA transport homolog 4 yes no 0.992 0.251 0.421 5e-51
P470471073 ATP-dependent RNA helicas yes no 0.996 0.241 0.421 1e-46
O137991030 Uncharacterized helicase no no 0.992 0.250 0.376 2e-40
O598011213 Putative ATP-dependent RN no no 0.992 0.212 0.314 1e-28
Q154771246 Helicase SKI2W OS=Homo sa no no 0.953 0.199 0.319 7e-26
P352071287 Antiviral helicase SKI2 O no no 0.826 0.167 0.310 1e-21
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 Back     alignment and function desciption
 Score =  235 bits (599), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 174/261 (66%), Gaps = 2/261 (0%)

Query: 1    MKIEDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDS 59
            M I+D  +  ++ ++E  EH++++HPL N    E      +RKA++  +I+  K +++ +
Sbjct: 781  MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKA 840

Query: 60   QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 119
            +     DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL  
Sbjct: 841  RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSS 900

Query: 120  HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 179
             Q  AL SCF+  + SSE   L  +LA PL+Q+QE A++IA++  E KLE++ + Y+ S+
Sbjct: 901  EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SS 959

Query: 180  VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239
             +P LMDV+Y W+ GATFA + +MTD+FEGSIIR  RRL+E L Q+  AA+A+G   LE 
Sbjct: 960  FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 1019

Query: 240  KFAAASESLRRGIMFSNSLYL 260
            KFA     ++R I+F+ SLYL
Sbjct: 1020 KFAEGITKIKRDIVFAASLYL 1040
May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3 Back     alignment and function description
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1 Back     alignment and function description
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 Back     alignment and function description
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 Back     alignment and function description
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 Back     alignment and function description
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 Back     alignment and function description
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 Back     alignment and function description
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
359484919 995 PREDICTED: superkiller viralicidic activ 1.0 0.261 0.911 1e-137
297736019 938 unnamed protein product [Vitis vinifera] 1.0 0.277 0.911 1e-137
224087335 985 predicted protein [Populus trichocarpa] 1.0 0.263 0.9 1e-136
449470374 1014 PREDICTED: superkiller viralicidic activ 1.0 0.256 0.857 1e-131
18396436 995 RNA helicase, ATP-dependent, SK12/DOB1 p 1.0 0.261 0.857 1e-130
16024936 991 HUA enhancer 2 [Arabidopsis thaliana] 1.0 0.262 0.857 1e-130
297831726 984 HUA enhancer 2 [Arabidopsis lyrata subsp 1.0 0.264 0.857 1e-129
356523685 976 PREDICTED: superkiller viralicidic activ 1.0 0.266 0.846 1e-129
356513235 982 PREDICTED: LOW QUALITY PROTEIN: superkil 1.0 0.264 0.85 1e-129
357520641 984 ATP-dependent RNA helicase DOB1 [Medicag 1.0 0.264 0.838 1e-127
>gi|359484919|ref|XP_002266524.2| PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/260 (91%), Positives = 249/260 (95%)

Query: 1   MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ 60
           M IEDPE V+L NQIEELE KLFAHPL+KSQDENQIR FQRKAEVNHEIQQLK+KMRDSQ
Sbjct: 736 MGIEDPEFVELANQIEELEQKLFAHPLHKSQDENQIRSFQRKAEVNHEIQQLKTKMRDSQ 795

Query: 61  IQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 120
           +QKFRDELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH
Sbjct: 796 LQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 855

Query: 121 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTV 180
           QVAALASCFIP DKS+EQI+LR ELAKPLQQLQ+SAR+IAEIQ+ECKLEVNVDEYVEST 
Sbjct: 856 QVAALASCFIPGDKSTEQIHLRTELAKPLQQLQDSARRIAEIQHECKLEVNVDEYVESTA 915

Query: 181 RPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKK 240
           RP+LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE NLE K
Sbjct: 916 RPYLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEANLENK 975

Query: 241 FAAASESLRRGIMFSNSLYL 260
           FAAASESLRRGIMF+NSLYL
Sbjct: 976 FAAASESLRRGIMFANSLYL 995

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736019|emb|CBI24057.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087335|ref|XP_002308126.1| predicted protein [Populus trichocarpa] gi|222854102|gb|EEE91649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470374|ref|XP_004152892.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18396436|ref|NP_565338.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gi|20197305|gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gi|28973761|gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gi|330250934|gb|AEC06028.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16024936|gb|AAL11446.1| HUA enhancer 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831726|ref|XP_002883745.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] gi|297329585|gb|EFH60004.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356523685|ref|XP_003530466.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356513235|ref|XP_003525319.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357520641|ref|XP_003630609.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] gi|355524631|gb|AET05085.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2063648995 HEN2 "hua enhancer 2" [Arabido 1.0 0.261 0.857 6.2e-117
FB|FBgn00019861055 l(2)35Df "lethal (2) 35Df" [Dr 0.996 0.245 0.452 2.3e-57
RGD|1305984337 Skiv2l2 "superkiller viralicid 0.996 0.768 0.440 2.8e-57
MGI|MGI:19194481040 Skiv2l2 "superkiller viralicid 0.996 0.249 0.444 9.7e-57
UNIPROTKB|F5H7E2941 SKIV2L2 "Superkiller viralicid 0.996 0.275 0.440 1.6e-56
UNIPROTKB|P422851042 SKIV2L2 "Superkiller viralicid 0.996 0.248 0.440 2.6e-56
UNIPROTKB|E2RCI51042 SKIV2L2 "Uncharacterized prote 0.996 0.248 0.440 3.4e-56
ZFIN|ZDB-GENE-040426-28541034 skiv2l2 "superkiller viralicid 0.996 0.250 0.429 2.4e-55
UNIPROTKB|F1SLL61046 SKIV2L2 "Uncharacterized prote 0.996 0.247 0.435 6.9e-55
UNIPROTKB|F1N9931031 F1N993 "Uncharacterized protei 0.996 0.251 0.425 2.1e-53
TAIR|locus:2063648 HEN2 "hua enhancer 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 223/260 (85%), Positives = 249/260 (95%)

Query:     1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ 60
             M I+D E+VDLV+QIEE+E KL AHP++KS+D+ QI+ FQRKAEVN+EIQQLKSKMRDSQ
Sbjct:   736 MNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQ 795

Query:    61 IQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 120
             +QKFRDELKNRSRVLKKLGHI+ADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHH
Sbjct:   796 LQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHH 855

Query:   121 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTV 180
             QVAALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAEIQ+ECKLE++V+EYVEST+
Sbjct:   856 QVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTI 915

Query:   181 RPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKK 240
             RPFLMDVIY WSKGA+FAE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGE +LE K
Sbjct:   916 RPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESK 975

Query:   241 FAAASESLRRGIMFSNSLYL 260
             FAAASESLRRGIMF+NSLYL
Sbjct:   976 FAAASESLRRGIMFANSLYL 995
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0003724 "RNA helicase activity" evidence=ISS
GO:0010093 "specification of floral organ identity" evidence=IMP
GO:0016070 "RNA metabolic process" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1305984 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N993 F1N993 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
pfam08148178 pfam08148, DSHCT, DSHCT (NUC185) domain 1e-66
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 2e-52
pfam13234266 pfam13234, rRNA_proc-arch, rRNA-processing arch do 2e-12
cd00192262 cd00192, PTKc, Catalytic domain of Protein Tyrosin 3e-04
>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain Back     alignment and domain information 
 Score =  203 bits (520), Expect = 1e-66
 Identities = 86/181 (47%), Positives = 122/181 (67%), Gaps = 4/181 (2%)

Query: 81  INADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS-SEQI 139
           I+ DGVV LKGR AC I + DELL+TEL+F+G FNDLD  ++AAL S F+  ++   E  
Sbjct: 1   IDDDGVVTLKGRVACEISSEDELLLTELLFSGFFNDLDPEELAALLSAFVFEERRDDEGY 60

Query: 140 NLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAE 199
              +ELA+ L +L E ARK+A+++ E    ++  EYVE      LM+V+Y W++GA+F+E
Sbjct: 61  PPSLELAEALNRLLEIARKLAKVEREHG--LDEPEYVER-FDFGLMEVVYEWARGASFSE 117

Query: 200 VIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 259
           + + TD+FEG I+R  RRLDE L QL  AA+ +G+  L +K   A E +RR I+F+ SLY
Sbjct: 118 ICEETDLFEGDIVRVIRRLDELLRQLANAAKIIGDPELAEKAEEAIELIRRDIVFAASLY 177

Query: 260 L 260
           L
Sbjct: 178 L 178

This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. Length = 178
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain Back     alignment and domain information
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
PF08148180 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
PF13234268 rRNA_proc-arch: rRNA-processing arch domain; PDB: 95.72
PRK02362737 ski2-like helicase; Provisional 94.06
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 93.97
COG1202830 Superfamily II helicase, archaea-specific [General 93.68
PRK00254720 ski2-like helicase; Provisional 93.6
PRK01172674 ski2-like helicase; Provisional 91.27
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 89.7
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 84.38
TIGR0364372 conserved hypothetical protein TIGR03643. This mod 84.02
PF1098573 DUF2805: Protein of unknown function (DUF2805); In 82.91
PRK00118104 putative DNA-binding protein; Validated 81.76
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-70  Score=527.92  Aligned_cols=259  Identities=55%  Similarity=0.863  Sum_probs=255.9

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhHhC
Q 024969            1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG   79 (260)
Q Consensus         1 ~~i~~~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~e~~~~~~vL~~lg   79 (260)
                      |+|++.+|.++.++++.++.++..||.|.. ...+.++.+.++..+..++++++.++++.+...+.+|++++++||++||
T Consensus       782 M~I~~~~~~~~~~k~e~lE~~l~~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG  861 (1041)
T KOG0948|consen  782 MNIKDVEFKKLVKKIESLEARLESHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLG  861 (1041)
T ss_pred             cCccchHHHHHHHHHHHHHHhhccCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence            899999999999999999999999999999 9999999999999999999999999999888889999999999999999


Q ss_pred             CCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHHHHHHHHHHHHHHHH
Q 024969           80 HINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKI  159 (260)
Q Consensus        80 yid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l~~~~~~l~~~~~~i  159 (260)
                      |++.++++.+||||||||+|+|||++||+||+|.|++|+|+|+||+||||||++++++.+.+.+++..++..|++.+++|
T Consensus       862 ~~t~ddvie~KGrvACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrI  941 (1041)
T KOG0948|consen  862 YCTSDDVIELKGRVACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRI  941 (1041)
T ss_pred             CCCCCCeEEEcceEEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 024969          160 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK  239 (260)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~  239 (260)
                      ++++.+|++++++++||.+ |+|++|+|||+|++|+||.+||++|+++||+|||++|||+||||||.+||+.|||.+|.+
T Consensus       942 AkVs~ecKlEide~~Yv~s-Fkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~ 1020 (1041)
T KOG0948|consen  942 AKVSKECKLEIDEEDYVES-FKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELEN 1020 (1041)
T ss_pred             HHHHHhhccccCHHHHHHh-cChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCccccCCCCC
Q 024969          240 KFAAASESLRRGIMFSNSLYL  260 (260)
Q Consensus       240 k~~~a~~~i~RdIVf~~SLYl  260 (260)
                      ||+.++.+|+|||||++||||
T Consensus      1021 Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 1021 KFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred             HHHHHHHHHhhceeehhhccC
Confidence            999999999999999999997

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR03643 conserved hypothetical protein TIGR03643 Back     alignment and domain information
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family Back     alignment and domain information
>PRK00118 putative DNA-binding protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 7e-48
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 1e-47
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 8e-23
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 172/261 (65%), Gaps = 2/261 (0%)
Query: 1    MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDS 59
            MKIED + + L+ +I+ L  KL ++PL  S    ++   + RK +++ +++QLK K+ +S
Sbjct: 751  MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISES 810
Query: 60   QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 119
            Q     D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L  
Sbjct: 811  QAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKP 870
Query: 120  HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 179
             Q AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA+I  + K+EV   +YVES 
Sbjct: 871  EQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES- 929
Query: 180  VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239
             R  LM+V+Y W +GATF ++ +MTD++EGS+IR  +RL+E + +L   A  +G  +L++
Sbjct: 930  FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE 989
Query: 240  KFAAASESLRRGIMFSNSLYL 260
            K  A  + + R I+ + SLYL
Sbjct: 990  KMEAVLKLIHRDIVSAGSLYL 1010
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 8e-89
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 1e-87
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 1e-81
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
 Score =  282 bits (722), Expect = 8e-89
 Identities = 111/261 (42%), Positives = 171/261 (65%), Gaps = 2/261 (0%)

Query: 1    MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 59
            MKIED + + L+ +I+ L  KL ++PL  S   E     + RK +++ +++QLK K+ +S
Sbjct: 751  MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISES 810

Query: 60   QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 119
            Q     D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L  
Sbjct: 811  QAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKP 870

Query: 120  HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 179
             Q AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA+I  + K+EV   +YVES 
Sbjct: 871  EQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES- 929

Query: 180  VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 239
             R  LM+V+Y W +GATF ++ +MTD++EGS+IR  +RL+E + +L   A  +G  +L++
Sbjct: 930  FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE 989

Query: 240  KFAAASESLRRGIMFSNSLYL 260
            K  A  + + R I+ + SLYL
Sbjct: 990  KMEAVLKLIHRDIVSAGSLYL 1010
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 97.01
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 96.04
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 95.87
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 92.85
4dyq_A140 Gene 1 protein; GP1, octamer, DNA-binding, viral p 89.64
1p4x_A250 Staphylococcal accessory regulator A homologue; wi 88.68
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=5e-70  Score=562.96  Aligned_cols=259  Identities=43%  Similarity=0.724  Sum_probs=251.8

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhHhC
Q 024969            1 MKIEDPEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG   79 (260)
Q Consensus         1 ~~i~~~~~~~~~~~~~~l~~~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~e~~~~~~vL~~lg   79 (260)
                      |+|++.++.+...+++.+++++++||||.| ++++|+++++++.+++.+++.+++++++.+++.++++|+++++||++||
T Consensus       751 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~  830 (1010)
T 2xgj_A          751 MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLG  830 (1010)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred             hccccHHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC
Confidence            678899999999999999999999999999 9999999999999999999999999999888888999999999999999


Q ss_pred             CCCCCCccchhhHHHhhhccCChHHHHHHHhhCCCCCCCHHHHHHHhhhhccccCCCccccccHHHHHHHHHHHHHHHHH
Q 024969           80 HINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKI  159 (260)
Q Consensus        80 yid~~~~~t~kGrva~eI~~~~eLlltEll~~g~f~~L~p~elaallS~~v~e~~~~~~~~~~~~l~~~~~~l~~~~~~i  159 (260)
                      |||++++||+|||+||+|+++||||+|||||+|+|++|+|+||||++||||||+++++.|.+++.+..++.++++++.+|
T Consensus       831 ~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  910 (1010)
T 2xgj_A          831 FCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKI  910 (1010)
T ss_dssp             SBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99988999999999999999999999999999999999999999999999999998877888999999999999999999


Q ss_pred             HHHHHHcCCCCChhhhhhccCcccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 024969          160 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK  239 (260)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~  239 (260)
                      +++|.+||+++++++|+++ |+|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+++|||++|.+
T Consensus       911 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~  989 (1010)
T 2xgj_A          911 AKIMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKE  989 (1010)
T ss_dssp             HHHHHHTTCCCCHHHHHHT-SCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHhCCCCChhHhccc-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCccccCCCCC
Q 024969          240 KFAAASESLRRGIMFSNSLYL  260 (260)
Q Consensus       240 k~~~a~~~i~RdIVf~~SLYl  260 (260)
                      ||++|+++|||||||++||||
T Consensus       990 ~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A          990 KMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp             HHHHHHHHHSCGGGGCCCC-C
T ss_pred             HHHHHHHhccCCeEecccccC
Confidence            999999999999999999997
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Back     alignment and structure
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A Back     alignment and structure
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 94.24
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Achaeal helicase C-terminal domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.24  E-value=0.028  Score=45.41  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCc
Q 024969          182 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGI  252 (260)
Q Consensus       182 ~~l~~vv~~Wa~G~~f~~i~~~t~l~EGdiVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~i~RdI  252 (260)
                      +.-+-+++.|.++.|..+|.+..++..||+=+......=++..+...++.+|..+|.+--.+...-++.++
T Consensus        73 ~KtAl~L~dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~l~~L~~Rl~~Gv~~el  143 (198)
T d2p6ra2          73 VKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERIKHGVKEEL  143 (198)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSTTHHHHHHHTCCGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHccCCHHH
Confidence            45667899999999999999999999999999988888999999999999988666554444444455443