Citrus Sinensis ID: 024972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHccccccccccEEEHHHHHHcccccccHHHHHHHHcccccccccEEEcHHHHHHHHHHHHccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHEEcccccHcHcccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccEEEEEHHHHHHHHHHccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgkrkrgdannpidivsstpedpghlskhrtcWLHTVAFLHARKMKISKQKIrnfeltapcflgtfscrrrskrrvkckntslikgknsssvkckDMITKrkknkldsgkfeHLLDNLWRSfsedkkagftyLDSLWfdlyrkpsskakVLTWIKRKHIFSKKYVLVPIVCWFVMDiykaedrpetkelisripllvpkvpqqrngeecGNFVLYFINLFvegapenfnledypyfmeknwftaeDLDCFCERLNSSEN
Flexible Loop (DISEMBL)
mgkrkrgdannpidivsstpedpghlSKHRTCWLHTVAFLHARKMKISKQkirnfeltapcflgtfscrrrskrrvkckntslikgknsssvkckdmitkrkknkldsgkfeHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVltwikrkhifskkyvlvpIVCWFVMDIYKAEDRPETKelisripllvpkvpqqrngEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
Low Complexity Region (SEG)
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFscrrrskrrvkckNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
Disordered region (IsUnstruct)
****************************HRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKC*******************************KFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCER******
Disordered Region (DISOPRED)
*************DIVSSTPE*****S****CW***********************************************************K**********NKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNS***
Disordered Region (DISEMBL)
*********NNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRR*********NTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
Disordered Region (DISPRO)
********ANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTF***************************C*DMI*KR*KNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q2PS26	584	Ubiquitin-like-specific p	no	no	0.243	0.107	0.406	6e-06
Q0WKV8	774	Probable ubiquitin-like-s	no	no	0.378	0.126	0.238	4e-05
Q8RWN0	571	Ubiquitin-like-specific p	no	no	0.181	0.082	0.437	9e-05

>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 187 KELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAED 246
           K L  RI   V +VPQQ+N  +CG FVL+FI  F+E AP+    +D   F +K WF  ++
Sbjct: 503 KNLPRRISEAVVQVPQQKNDFDCGPFVLFFIKRFIEEAPQRLKRKDLGMF-DKKWFRPDE 561

Query: 247 LDCF 250
               
Sbjct: 562 ASAL 565

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1C.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 53/151 (35%)

Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWF----VMDIYKAEDRPETKELISRIPLLVP------ 198
           +V  W K   +F K Y+ +PI C F    V+  +  E  P   E   R+P ++       
Sbjct: 375 RVQKWTKNVDLFEKDYIFIPINCSFHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKG 434

Query: 199 ----------------------------------------KVPQQRNGEECGNFVLYFIN 218
                                                   ++PQQ N  +CG F+L++++
Sbjct: 435 SHKGGLINIFPSYLREEWKARHENTTNDSSRAPNMQSISLELPQQENSFDCGLFLLHYLD 494

Query: 219 LFVEGAPENFN---LEDYPYFMEKNWFTAED 246
           LFV  AP  FN   +     F+ +NWF A++
Sbjct: 495 LFVAQAPAKFNPSLISRSANFLTRNWFPAKE 525

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1

 Score = 47.8 bits (112), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAED 246
           +VPQQ+N  +CG F+L+FI  F+E AP+   L+D    + K WF  E+
Sbjct: 502 QVPQQKNDFDCGLFLLFFIRRFIEEAPQRLTLQDLK-MIHKKWFKPEE 548

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1D.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
359491154	295	PREDICTED: uncharacterized protein LOC10	0.926	0.813	0.475	5e-67
255540373	294	sentrin/sumo-specific protease, putative	0.942	0.829	0.475	2e-66
224109184	298	predicted protein [Populus trichocarpa]	0.907	0.788	0.481	6e-66
388499368	284	unknown [Lotus japonicus]	0.586	0.535	0.566	6e-53
356507339	279	PREDICTED: uncharacterized protein LOC10	0.602	0.559	0.515	1e-48
224136047	186	predicted protein [Populus trichocarpa]	0.544	0.758	0.535	5e-46
240255544	298	cysteine-type peptidase [Arabidopsis tha	0.868	0.755	0.375	4e-45
307136120	274	sentrin/sumo-specific protease [Cucumis	0.741	0.700	0.422	3e-44
449469608	274	PREDICTED: probable ubiquitin-like-speci	0.749	0.708	0.407	6e-43
255547470	284	sentrin/sumo-specific protease, putative	0.540	0.492	0.478	5e-40

>gi|359491154|ref|XP_002262951.2| PREDICTED: uncharacterized protein LOC100251251 [Vitis vinifera] gi|297733618|emb|CBI14865.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 145/305 (47%), Positives = 180/305 (59%), Gaps = 65/305 (21%)

Query: 1   MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFEL--- 57
           M K+K  ++N PID+ S+  E     SKHR+CW H VA L A+  +++K +I   +    
Sbjct: 1   MVKKKPRNSNAPIDLASADSESYLDYSKHRSCWRHMVAHLQAQNKRMTKHEIEEIKEIFE 60

Query: 58  -TAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLD 116
            T PCF  TF    RSKRR+ CKN                +I +++K KLD+  FE    
Sbjct: 61  FTTPCFSNTFPRHERSKRRINCKN----------------IIIRKEKKKLDTAAFEWYFR 104

Query: 117 NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCW---- 172
           NLW+SFS+DKK+ F YLD LWF  Y K SS+ KVL WIK+K IFS+KYV VPIVCW    
Sbjct: 105 NLWKSFSDDKKSSFGYLDCLWFSFYLKTSSREKVLNWIKKKRIFSRKYVFVPIVCWNHWS 164

Query: 173 ----------------------------------------FVMDIYKAEDRPETKELISR 192
                                                   FV DIYK E RPE+K+LIS+
Sbjct: 165 LLILCHFGESLESKIRAPCMLLLDSLQMANPKRLEPNIRKFVFDIYKEEGRPESKQLISK 224

Query: 193 IPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNL-EDYPYFMEKNWFTAEDLDCFC 251
           IPLLVPKVPQQRNGEECGNFVLYFINLF++GAPENF++ E YPYFM+KNWF  E L+ F 
Sbjct: 225 IPLLVPKVPQQRNGEECGNFVLYFINLFMDGAPENFSVSEGYPYFMKKNWFGPEALEHFF 284

Query: 252 ERLNS 256
            +L+S
Sbjct: 285 RKLDS 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540373|ref|XP_002511251.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223550366|gb|EEF51853.1| sentrin/sumo-specific protease, putative [Ricinus communis]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/303 (47%), Positives = 180/303 (59%), Gaps = 59/303 (19%)

Query: 1   MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHAR---KMKISKQKIRNFEL 57
           M KRK  D    +D+ S   E    +SKHR+CW H V  L+       K   +K+R F+L
Sbjct: 1   MAKRKPQDEFIVVDVDSPMSEVFARISKHRSCWKHMVTSLYTHGKKIKKKEAEKLRRFDL 60

Query: 58  TAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDN 117
            + CFLGTF  R+RS+RR+K K                 +I +++K +LDSG+F+    N
Sbjct: 61  ISQCFLGTFPTRQRSRRRIKHK------------FAITRVIKEKEKKRLDSGEFDCYFQN 108

Query: 118 LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCW----- 172
           LW+SFS++K+  F YLDSLWF  Y K S K KVLTWIKRK IFSKKYVLVPIVCW     
Sbjct: 109 LWKSFSKEKRTSFVYLDSLWFYWYLKASWKGKVLTWIKRKQIFSKKYVLVPIVCWGHWSL 168

Query: 173 ---------------------------------------FVMDIYKAEDRPETKELISRI 193
                                                  FV+DIY +E RPE K+LIS+I
Sbjct: 169 LIFCHLGEVSESNDRTPCMLLLDSLEMANPRRLEPDIRKFVLDIYTSEGRPEDKKLISQI 228

Query: 194 PLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCER 253
           PLLVPKVPQQRNGEECGN+VLYFINLF+ GAP++F+++DYPYFM KNWF+ E L+ F E 
Sbjct: 229 PLLVPKVPQQRNGEECGNYVLYFINLFMLGAPDDFSIKDYPYFMNKNWFSPECLERFSEE 288

Query: 254 LNS 256
           L S
Sbjct: 289 LES 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109184|ref|XP_002315114.1| predicted protein [Populus trichocarpa] gi|222864154|gb|EEF01285.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 145/301 (48%), Positives = 178/301 (59%), Gaps = 66/301 (21%)

Query: 6   RGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISK---QKIRNFELTAPCF 62
            G     ID+ S    D    SKHRTCW H  A +HAR+ +++K   ++I +F+LT+PCF
Sbjct: 14  HGGGVVTIDLESEGCTD--QPSKHRTCWKHIQARMHARRTRMTKKQAEEIESFKLTSPCF 71

Query: 63  LGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSF 122
           L T  CR RSK+R K  N                 ++K KK +LDS  F   ++NLW+SF
Sbjct: 72  LQTIPCRERSKKRFKRNNA----------------VSKLKK-ELDSVSFNCYMENLWKSF 114

Query: 123 SEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCW---------- 172
           SEDKK  F YLDSLWF +Y + SS  KVL WIKRKHIFSKKYVLVPIV W          
Sbjct: 115 SEDKKMSFAYLDSLWFTMYTEASSGVKVLEWIKRKHIFSKKYVLVPIVRWCHWSLLIFCH 174

Query: 173 ----------------------------------FVMDIYKAEDRPETKELISRIPLLVP 198
                                             FV DIY++E RPE K +IS+IPLLVP
Sbjct: 175 FGESLLSENITPCMLLLDSLEMASPKRLEPDIRKFVWDIYESEGRPENKHMISQIPLLVP 234

Query: 199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSE 258
           KVPQQRNG ECGN+VL FINLFV+ APENF++E YPYFM+ NWF+ E L+ FCE+L S E
Sbjct: 235 KVPQQRNGVECGNYVLNFINLFVQDAPENFHMEGYPYFMKDNWFSPEGLEHFCEKLESLE 294

Query: 259 N 259
           +
Sbjct: 295 S 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499368|gb|AFK37750.1| unknown [Lotus japonicus]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 125/196 (63%), Gaps = 44/196 (22%)

Query: 105 KLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKY 164
           KLDSG F++ L  +W SFSEDK+  F Y DSLWF LYR  SSK KVLTWIK++HIFSK Y
Sbjct: 87  KLDSGVFDNNLVKIWNSFSEDKRKPFAYFDSLWFSLYRAASSKDKVLTWIKKEHIFSKAY 146

Query: 165 VLVPIVCW--------------------------------------------FVMDIYKA 180
           V VPIVCW                                            FV+DIYKA
Sbjct: 147 VFVPIVCWGHWSLLIFCHFGESLQSTTRSRCMLLLDSLEMVNPRRLEPDIRRFVVDIYKA 206

Query: 181 EDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKN 240
            DRPETK LI +IPLLVPKVPQQR+G ECGNFVLYFINLF+  APENF++  YPYFM+K+
Sbjct: 207 WDRPETKNLIYQIPLLVPKVPQQRDGNECGNFVLYFINLFLRCAPENFSMGGYPYFMKKD 266

Query: 241 WFTAEDLDCFCERLNS 256
           WFT ED D FCERL S
Sbjct: 267 WFTFEDFDRFCERLYS 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507339|ref|XP_003522425.1| PREDICTED: uncharacterized protein LOC100780621 [Glycine max]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 123/200 (61%), Gaps = 44/200 (22%)

Query: 101 RKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIF 160
           R K KL+SG F+  L  +W+ FS D+   FT  DSLWF LYR   SK KVLTWIK++ IF
Sbjct: 78  RPKEKLNSGDFDIYLKKIWKIFSGDRLRHFTCFDSLWFSLYRAAPSKDKVLTWIKKEPIF 137

Query: 161 SKKYVLVPIVCW--------------------------------------------FVMD 176
           SK YV VPIVCW                                            FV+D
Sbjct: 138 SKSYVFVPIVCWGHWSLLILCHFGESLESTTKSRCMLLLDSLEMTNPRRLEPEIRRFVLD 197

Query: 177 IYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYF 236
           IYK EDRPE K L+S+IP LVPKVPQQR+G ECG F+LYFINLF+E AP+NF++E YPYF
Sbjct: 198 IYKTEDRPEAKHLVSQIPFLVPKVPQQRDGNECGFFILYFINLFLEHAPDNFSMEGYPYF 257

Query: 237 MEKNWFTAEDLDCFCERLNS 256
           M+K+WF+ EDLD F ERL+S
Sbjct: 258 MKKDWFSFEDLDRFYERLDS 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136047|ref|XP_002322226.1| predicted protein [Populus trichocarpa] gi|222869222|gb|EEF06353.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 117/185 (63%), Gaps = 44/185 (23%)

Query: 118 LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCW----- 172
           +WR+FSEDK+   TY D LWF+LY K S K KVLTWIK+K IFSKKYVLVPIV W     
Sbjct: 1   MWRNFSEDKRTFITYFDCLWFNLYTKASFKGKVLTWIKKKQIFSKKYVLVPIVHWSHWSL 60

Query: 173 ---------------------------------------FVMDIYKAEDRPETKELISRI 193
                                                  FV+DIYK+E R E KELIS+I
Sbjct: 61  LIFCHLGESLQSKLRTPCMLLLDSLEKAGPRCLEPDIRKFVLDIYKSEGRAENKELISKI 120

Query: 194 PLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCER 253
           PLLVPKVPQQR GEECGN+VLY+INLFV+GAPENF ++DYPYFM++NWF+   L+ F E+
Sbjct: 121 PLLVPKVPQQRGGEECGNYVLYYINLFVQGAPENFCMDDYPYFMKQNWFSPGCLEAFFEK 180

Query: 254 LNSSE 258
           L   E
Sbjct: 181 LEPIE 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255544|ref|NP_190417.4| cysteine-type peptidase [Arabidopsis thaliana] gi|332644900|gb|AEE78421.1| cysteine-type peptidase [Arabidopsis thaliana]

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 150/290 (51%), Gaps = 65/290 (22%)

Query: 13  IDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQK-IRNFELTAPCFLGTFSCRRR 71
           + I+    ED      HRTCW H  A L     K  + K +  F+LTAPCF    + R R
Sbjct: 23  VTIIDDCEED--EYLHHRTCWKHIAAALSKCGSKPKRTKELEIFKLTAPCFYDECTRRGR 80

Query: 72  SKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFT 131
           S+RR+KCK                  +  + + KL+S  F   L+++WR FS++KK  F 
Sbjct: 81  SERRIKCK-----------------YLDSKLRKKLNSKAFVGYLEDVWRGFSDEKKNSFV 123

Query: 132 YLDSLWFDLYRKPSS--KAKVLTWIKRKHIFSKKYVLVPIVCW----------------- 172
           YLD LWF +Y+  +   ++ V   +K K IFSKKYV +PIV W                 
Sbjct: 124 YLDCLWFSMYKSENHNIRSSVFDSVKTKQIFSKKYVFLPIVYWSHWTLLIFCNFGEDLDS 183

Query: 173 --------------------------FVMDIYKAEDRPETKELISRIPLLVPKVPQQRNG 206
                                     FV+DIY+AE R E   L+  IP  VP VPQQ N 
Sbjct: 184 DKTCMLFLDSLQTTDSSQRLEPDIRKFVLDIYRAEGRTEDSSLVDEIPFYVPMVPQQTND 243

Query: 207 EECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNS 256
            ECG+FVLY+I+ F+E APENFN+ED PYF++++WF+ +DL+ FC+ L+S
Sbjct: 244 VECGSFVLYYIHRFIEDAPENFNVEDMPYFLKEDWFSHKDLEKFCDELHS 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136120|gb|ADN33966.1| sentrin/sumo-specific protease [Cucumis melo subsp. melo]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/251 (42%), Positives = 136/251 (54%), Gaps = 59/251 (23%)

Query: 52  IRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKF 111
           ++ F+  +P   GT   RRR + + K              V C   I  RK+ KLDS  F
Sbjct: 34  VKKFQPVSPSVSGTGPVRRRRQLKKK--------------VGCNGAIPVRKR-KLDSRAF 78

Query: 112 EHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVC 171
           E+   NLWRS  E+KK  FTYLD LWF+LY K S + KVL WIK K IFSKKYV VPIVC
Sbjct: 79  EYCFQNLWRSSPEEKKIQFTYLDCLWFNLYLKASHRRKVLKWIKDKEIFSKKYVFVPIVC 138

Query: 172 W--------------------------------------------FVMDIYKAEDRPETK 187
           W                                            FV DI+K + + +  
Sbjct: 139 WSHWSLLIFCHFDASPESKRRKPCMLLLDSLQEANPRRLEPEIRKFVFDIFKEDGKCKNL 198

Query: 188 ELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDL 247
            +I +IPL+VPKVPQQ+NG+ECG FVLYFI+LF+E AP NF ++DYPYFM++NWFT E +
Sbjct: 199 NVICKIPLMVPKVPQQKNGDECGKFVLYFIHLFMEAAPANFRIKDYPYFMKENWFTEEGV 258

Query: 248 DCFCERLNSSE 258
             F +   +S+
Sbjct: 259 CQFYKTFGNSD 269

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469608|ref|XP_004152511.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] gi|449487716|ref|XP_004157765.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus]

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 134/253 (52%), Gaps = 59/253 (23%)

Query: 50  QKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSG 109
           + ++N +  +P   G    RRR +   K        G+N +           +K KLDS 
Sbjct: 32  ENVKNLQPVSPSISGMGPVRRRRQLTKKV-------GRNGA--------IPVRKRKLDSR 76

Query: 110 KFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPI 169
            FE+   NLWRS  E+KK  FTYLD LWF+LY K S + KVL WIK K IFSKKYV VPI
Sbjct: 77  AFEYCFQNLWRSSPEEKKIQFTYLDCLWFNLYLKASHRRKVLKWIKDKEIFSKKYVFVPI 136

Query: 170 VCW--------------------------------------------FVMDIYKAEDRPE 185
           VCW                                            FV DI+K + + +
Sbjct: 137 VCWSHWSLLIFCHFDASPESKRRKPCMLLLDSLQEANPRRLEPEIRKFVFDIFKEDGKCK 196

Query: 186 TKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAE 245
              +I +IPL+VPKVPQQ+NG+ECG FVLYFI+LF+E AP NF ++DYPYFM++NWFT E
Sbjct: 197 NLNVICKIPLMVPKVPQQKNGDECGKFVLYFIHLFMEAAPANFRIKDYPYFMKENWFTEE 256

Query: 246 DLDCFCERLNSSE 258
            +  F +    S+
Sbjct: 257 GVCQFYKTFGHSD 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547470|ref|XP_002514792.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223545843|gb|EEF47346.1| sentrin/sumo-specific protease, putative [Ricinus communis]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 42/182 (23%)

Query: 105 KLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKY 164
           KLD+  F++   NLW +F EDK+  FTY D LWF +Y   SSK  +LTWIK K IFSKKY
Sbjct: 100 KLDTLAFDNHFKNLWSNFPEDKRMLFTYFDCLWFSVYMTASSKENMLTWIKDKDIFSKKY 159

Query: 165 VLVPIVCW------------------------------------------FVMDIYKAED 182
           VLVPIV W                                          FV+DI+++E 
Sbjct: 160 VLVPIVYWSHWSLLILCNFDSQSENGSPCMLLLDSLQMAGPRRLEPAIRKFVLDIFRSEG 219

Query: 183 RPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWF 242
           RPE ++ IS+IPLLVPKVPQQRNGEECGN+VLYFI+LFV  AP +F++++YPYFM  +W+
Sbjct: 220 RPEYEQSISQIPLLVPKVPQQRNGEECGNYVLYFIDLFVHQAPLDFSVKEYPYFMTDDWY 279

Query: 243 TA 244
           ++
Sbjct: 280 SS 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2101130	298	AT3G48480 [Arabidopsis thalian	0.351	0.305	0.549	7.6e-25
TAIR|locus:2195598	584	ULP1D "UB-like protease 1D" [A	0.227	0.101	0.433	1.4e-05
TAIR|locus:2194574	571	OTS2 "OVERLY TOLERANT TO SALT	0.181	0.082	0.437	0.00013
DICTYBASE|DDB_G0289557	778	DDB_G0289557 "peptidase C48 fa	0.235	0.078	0.378	0.00052

TAIR|locus:2101130 AT3G48480 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 50/91 (54%), Positives = 68/91 (74%)

Query:   166 LVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAP 225
             L P +  FV+DIY+AE R E   L+  IP  VP VPQQ N  ECG+FVLY+I+ F+E AP
Sbjct:   203 LEPDIRKFVLDIYRAEGRTEDSSLVDEIPFYVPMVPQQTNDVECGSFVLYYIHRFIEDAP 262

Query:   226 ENFNLEDYPYFMEKNWFTAEDLDCFCERLNS 256
             ENFN+ED PYF++++WF+ +DL+ FC+ L+S
Sbjct:   263 ENFNVEDMPYFLKEDWFSHKDLEKFCDELHS 293

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2195598 ULP1D "UB-like protease 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query:   187 KELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAED 246
             K L  RI   V +VPQQ+N  +CG FVL+FI  F+E AP+    +D   F +K WF  ++
Sbjct:   503 KNLPRRISEAVVQVPQQKNDFDCGPFVLFFIKRFIEEAPQRLKRKDLGMF-DKKWFRPDE 561

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0016926 "protein desumoylation" evidence=RCA;IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query:   199 KVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAED 246
             +VPQQ+N  +CG F+L+FI  F+E AP+   L+D    + K WF  E+
Sbjct:   502 QVPQQKNDFDCGLFLLFFIRRFIEEAPQRLTLQDLK-MIHKKWFKPEE 548

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0016926 "protein desumoylation" evidence=RCA;IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0289557 DDB_G0289557 "peptidase C48 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query:   184 PETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPY-FMEK-NW 241
             PE K   S +PL+   VP+Q N  +CG F+L++I LF     ++F   ++P  F+ + NW
Sbjct:   472 PERKFTSSNLPLVRANVPKQDNLFDCGVFLLHYIELFCRNPEKDF---EFPVSFLNRPNW 528

Query:   242 FTAEDL 247
             F  ED+
Sbjct:   529 FKIEDI 534

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	1e-07
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	2e-04
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	0.003

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 29/116 (25%)

Query: 150 VLTWIKRKHIFSKKYVLVPI---VCWFVMDIYKAEDRPETKELISRIP------------ 194
           V  W K+  IFSKKY+ +PI     WF+  I   +      + ++               
Sbjct: 441 VRRWTKKTDIFSKKYIFIPINISYHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSYLL 500

Query: 195 --------------LLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYF 236
                         +   KVPQQRNG +CG FV  FI  F+E  PE F+  D P  
Sbjct: 501 DEYKIQHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLENPPEQFSKNDRPRA 556

Length = 578

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 33/136 (24%), Positives = 47/136 (34%), Gaps = 46/136 (33%)

Query: 150 VLTWIKRKH---IFSKKYVLVPI----VCWFVMDI--------------------YKAED 182
           V  W ++ +   +F    + +PI      W ++ I                     K   
Sbjct: 68  VRRWTRKVNKKWLFDVDIIYIPINWDGKHWVLLIINLPKKTITILDSLISLHTEAVKKRI 127

Query: 183 RP----------ETKELISRIPLL-------VPKVPQQRNGEECGNFVLYFINLFVEGAP 225
           RP          E  +     P L       + KVPQQ N  +CG +VL FI L  EG P
Sbjct: 128 RPIDNMLPYLMSEALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFIELLAEGVP 187

Query: 226 ENF--NLEDYPYFMEK 239
             F    +D   F +K
Sbjct: 188 FEFLTADKDVDRFRKK 203

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 197 VPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYF 236
           V  +P+Q+NG +CG F++ +I+ +  G    F  E  PYF
Sbjct: 437 VEDLPEQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYF 476

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	100.0
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.89
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.88
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	99.69

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-40  Score=319.71  Aligned_cols=156  Identities=29%  Similarity=0.469  Sum_probs=130.6

Q ss_pred             cCCCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccc
Q 024972           84 IKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKK  163 (259)
Q Consensus        84 ~~~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd  163 (259)
                      ....+.+.||.+||.||.+++||||+||||||++|.+....+.+.+.+|++|+|||+.|...||++|+|||++++||++|
T Consensus       312 ~~~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~~gy~~VkRWTk~v~if~~d  391 (511)
T KOG0778|consen  312 LVTHFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVGRGYAGVKRWTKKVDIFDKD  391 (511)
T ss_pred             eehhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhhcchHHHHhHhhccCccccc
Confidence            33444599999999999999999999999999999765554444778999999999999999999999999999999999


Q ss_pred             eEEEee---eccc--hhh-------ccccCC--------------chHHHhhhcCCCC--------CCCCCCCCcCCCch
Q 024972          164 YVLVPI---VCWF--VMD-------IYKAED--------------RPETKELISRIPL--------LVPKVPQQRNGEEC  209 (259)
Q Consensus       164 ~IfIPI---~HW~--vlD-------sl~s~~--------------~~e~k~~i~~i~~--------~~~~~PqQ~Ng~DC  209 (259)
                      +|||||   +||.  +||       +|||++              ..|+.++ ++..+        .+.++|||.||+||
T Consensus       392 ~i~vPIH~~vHW~l~vid~r~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~~~k-~~~~~d~s~w~~~~~~~iP~Q~Ng~DC  470 (511)
T KOG0778|consen  392 IIFVPIHLGVHWCLAVIDLREKTIEYYDSLGGGPNRICDALAKYLQDESRDK-SKKDFDVSGWTIEFVQNIPQQRNGSDC  470 (511)
T ss_pred             eeEeeeecCceEEEEEEEcccceEEEeeccCCCCcchHHHHHHHHHHHHhhh-hcCCCCccchhhhhhhccccccCCCcc
Confidence            999999   9994  333       556654              2333332 22232        15789999999999


Q ss_pred             hHHHHHHHHHHhcCCCCccCCCCCcchhhcC
Q 024972          210 GNFVLYFINLFVEGAPENFNLEDYPYFMEKN  240 (259)
Q Consensus       210 GvfVL~~a~~l~~~~p~~f~~~dmp~fr~~~  240 (259)
                      |||+|+||++++.+.|++|+|+|||+||++|
T Consensus       471 G~f~c~~~~~~s~~~p~~ftq~dmp~fR~~m  501 (511)
T KOG0778|consen  471 GMFVCKYADYISRDVPLTFTQQDMPYFRKKM  501 (511)
T ss_pred             ceEEeeechhhccCCCcccChhhhHHHHHHH
Confidence            9999999999999999999999999999874

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=1.3e-38  Score=305.09  Aligned_cols=204  Identities=20%  Similarity=0.282  Sum_probs=153.9

Q ss_pred             HHHHHHhhhhhhhhhhhcccccCCcccccccccccccc--------------------------------ccccccc--c
Q 024972           37 VAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKR--------------------------------RVKCKNT--S   82 (259)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~sk~--------------------------------~~~~~~~--~   82 (259)
                      |.++++|+|+++.++.|+.+|.+-.|...+.+++++--                                +....+.  .
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLT~e~~~~V~~al~~~~~~~v  279 (490)
T PLN03189        200 VLSVEAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRPKPKEPVEEVPREPFIPLTREEETEVKRAFSANNRRKV  279 (490)
T ss_pred             ccccHHHHHHHHHHHhhcchhhhccceeehhhhHHHHHhhhccCccccccccccccCcCCCHHHHHHHHHHhcCCCccce
Confidence            77899999999999999999999999999998887710                                0111110  1


Q ss_pred             ccC-CCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcc-cccCCeeeeeccccccccCCc----chHHHHHHhhh
Q 024972           83 LIK-GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSE-DKKAGFTYLDSLWFDLYRKPS----SKAKVLTWIKR  156 (259)
Q Consensus        83 ~~~-~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~-~~~~~~~~~~s~FF~~~l~~~----~~~~V~rw~k~  156 (259)
                      +.. ++..++||..|+.+|.|++||||+||||||++|.+.... ......+|++++||++.|...    +|+.|++|+++
T Consensus       280 lvs~~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~  359 (490)
T PLN03189        280 LVTHENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQ  359 (490)
T ss_pred             eeecCCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhh
Confidence            121 344678999999999999999999999999999753221 222345778888888777554    79999999975


Q ss_pred             ----cCCcccceEEEee---eccch---------hhccccCCchH--------------HHhhh------cCCCCC-CCC
Q 024972          157 ----KHIFSKKYVLVPI---VCWFV---------MDIYKAEDRPE--------------TKELI------SRIPLL-VPK  199 (259)
Q Consensus       157 ----~~Lf~kd~IfIPI---~HW~v---------lDsl~s~~~~e--------------~k~~i------~~i~~~-~~~  199 (259)
                          ++||++|+|||||   +||++         |-+|||++...              +++..      ..+... ..+
T Consensus       360 kKigv~Lfs~D~IFIPIh~n~HWsLaVId~k~k~I~yyDSLgg~~~~vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~  439 (490)
T PLN03189        360 KKLGYHLIDCDKIFVPIHQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQEFVED  439 (490)
T ss_pred             cccccccccCceEEeeeecCCeeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcCCCcchhcceeccCCC
Confidence                4689999999999   89942         12344443322              11110      112222 468


Q ss_pred             CCCCcCCCchhHHHHHHHHHHhcCCCCccCCCCCcchhhcC
Q 024972          200 VPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKN  240 (259)
Q Consensus       200 ~PqQ~Ng~DCGvfVL~~a~~l~~~~p~~f~~~dmp~fr~~~  240 (259)
                      +|||.||+|||||||+||++++.+.+++|+|+|||+||+++
T Consensus       440 vPQQ~NG~DCGVFVL~yAE~~SrG~~LtFSQeDMp~fRrRm  480 (490)
T PLN03189        440 LPEQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRT  480 (490)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCcChhhhHHHHHHH
Confidence            99999999999999999999999999999999999999874

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-36  Score=288.05  Aligned_cols=158  Identities=29%  Similarity=0.435  Sum_probs=130.8

Q ss_pred             cccCCCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcc
Q 024972           82 SLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFS  161 (259)
Q Consensus        82 ~~~~~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~  161 (259)
                      +|..++.++.||-.|+.+|.+++||||.||||||+||.......-...-+|++++|||+.|...||++|+||+++++||+
T Consensus       373 ~~~~~~~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~~s~~~~vh~FnTFFYT~LsrrGy~gVrrW~kk~dif~  452 (578)
T COG5160         373 YPFNDRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTDIFS  452 (578)
T ss_pred             ccccCcCcceeehHhhhhhccccchhhHHHHHHHHHHHHhccCcccccceEEeehhhHHHHHHHHhHHHHHHHhccCccc
Confidence            57889999999999999999999999999999999994332222234557899999999999899999999999999999


Q ss_pred             cceEEEee---eccc------------hhhccc-----------cCCchHHHhhhc---CCCCCCCCCCCCcCCCchhHH
Q 024972          162 KKYVLVPI---VCWF------------VMDIYK-----------AEDRPETKELIS---RIPLLVPKVPQQRNGEECGNF  212 (259)
Q Consensus       162 kd~IfIPI---~HW~------------vlDsl~-----------s~~~~e~k~~i~---~i~~~~~~~PqQ~Ng~DCGvf  212 (259)
                      ++||||||   .||+            ++|++.           +|+..|++..+.   .+.+...++|||.||+|||||
T Consensus       453 ~k~I~iPIni~~HW~l~II~~~~~~i~~~DSLan~~~~v~~~L~~Y~ldE~k~~~~k~~~~~~~~~~vPqQ~Ng~DCGV~  532 (578)
T COG5160         453 KKYIFIPINISYHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSYLLDEYKIQHDKDPQIKMKHCKVPQQRNGSDCGVF  532 (578)
T ss_pred             cceEEEEecccceEEEEEeecCcceeEEecccccCcHHHHHHHHHHHHHHHhcccCCchhhhhhcCCCCCCCCCCccceE
Confidence            99999999   8994            223332           233344443322   233457899999999999999


Q ss_pred             HHHHHHHHhcCCCCccCCCCCcchhhc
Q 024972          213 VLYFINLFVEGAPENFNLEDYPYFMEK  239 (259)
Q Consensus       213 VL~~a~~l~~~~p~~f~~~dmp~fr~~  239 (259)
                      ||++++++++++|+.|.+.|+|.+|+.
T Consensus       533 vc~~~~~~~~~~p~~f~~nd~~r~Rk~  559 (578)
T COG5160         533 VCMFIRYFLENPPEQFSKNDRPRARKN  559 (578)
T ss_pred             EEEeeeecccCChhhcCccchHHHHHH
Confidence            999999999999999999999999975

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.89  E-value=2.3e-23  Score=181.61  Aligned_cols=160  Identities=16%  Similarity=0.211  Sum_probs=107.9

Q ss_pred             ccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeec--cccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972           89 SSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDS--LWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (259)
Q Consensus        89 ~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s--~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If  166 (259)
                      .+.++.+|++.|+++.||||.+|+||.|||.+........ ..++.+  +||..  .+...+.+.......++.+|++||
T Consensus        16 dv~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s~~~-~~ll~P~~t~~l~--~~~~~~e~~~~~~pl~l~~k~~if   92 (223)
T KOG3246|consen   16 DVSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRSEPD-LHLLRPSLTFFLR--HAPNPEEIAMVLDPLDLNDKDFIF   92 (223)
T ss_pred             ehhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhcccCcc-hhccCHHHHHHHH--hCCCcHHHHHhcChhhcCCCceEE
Confidence            4578999999999999999999999999997754332222 122222  23321  244567888899999999999999


Q ss_pred             Eee------------eccc------------hhhccccCCchHHHhhh-------cCC-CCC-CCCCCCCcCCCchhHHH
Q 024972          167 VPI------------VCWF------------VMDIYKAEDRPETKELI-------SRI-PLL-VPKVPQQRNGEECGNFV  213 (259)
Q Consensus       167 IPI------------~HW~------------vlDsl~s~~~~e~k~~i-------~~i-~~~-~~~~PqQ~Ng~DCGvfV  213 (259)
                      +||            +||+            +.||+........+.++       ++. ... ...+|||+||||||+||
T Consensus        93 lpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~~~~~~~~~~~qQqNgyDCG~hV  172 (223)
T KOG3246|consen   93 LPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKDAKSLMKKLRALLKKKFAKRVECKCLQQQNGYDCGLHV  172 (223)
T ss_pred             EEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHHHHHHHHHHHHHHhhhhhhcccccChhhhcCCchhHHH
Confidence            999            6995            44555555544444432       111 112 67889999999999999


Q ss_pred             HHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhc
Q 024972          214 LYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS  257 (259)
Q Consensus       214 L~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~  257 (259)
                      |++++.++...    .+..|+...  .-..+.-++++|+.|..|
T Consensus       173 ~~~t~~l~~~~----~~~~~~~~~--~~~~~~~i~~lr~~l~~L  210 (223)
T KOG3246|consen  173 CCNTRVLAERL----LRCPYATSS--QLLVVDLIKALREELLDL  210 (223)
T ss_pred             HHHHHHHHHHH----hcccccccc--chhhHHHHHHHHHHHHHH
Confidence            99999988653    122222210  112345677788777654

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.88  E-value=3e-23  Score=178.97  Aligned_cols=142  Identities=29%  Similarity=0.543  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHHHhhhc-ccccCCeeeeeccccccccC--------------------CcchHHHHHHhhhc---CC
Q 024972          104 NKLDSGKFEHLLDNLWRSFS-EDKKAGFTYLDSLWFDLYRK--------------------PSSKAKVLTWIKRK---HI  159 (259)
Q Consensus       104 ~WLND~IInfYle~L~~~~~-~~~~~~~~~~~s~FF~~~l~--------------------~~~~~~V~rw~k~~---~L  159 (259)
                      +||||+|||||+++|..... +......+++.+++|+..+.                    ...+..+.+|.+..   ++
T Consensus         1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (216)
T PF02902_consen    1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL   80 (216)
T ss_dssp             --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred             CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence            69999999999999974332 22223334555555544443                    12356778899887   99


Q ss_pred             cccceEEEee----eccc------------hhhccccCCc-hHHH----hh---h---------cCC---CCC---CCCC
Q 024972          160 FSKKYVLVPI----VCWF------------VMDIYKAEDR-PETK----EL---I---------SRI---PLL---VPKV  200 (259)
Q Consensus       160 f~kd~IfIPI----~HW~------------vlDsl~s~~~-~e~k----~~---i---------~~i---~~~---~~~~  200 (259)
                      +++++||+||    .||+            ++||+.+... ....    ..   +         ...   ++.   ..++
T Consensus        81 ~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (216)
T PF02902_consen   81 FDKDYIFIPININNNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEGRDPDKSPFKIVRPPNV  160 (216)
T ss_dssp             GGSSEEEEEEEETTTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHSSCT-TTTCEEEEECTS
T ss_pred             cccCEEEEEEechhhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhccccccccccccceeeecccccc
Confidence            9999999999    7994            3455544433 0000    00   0         011   221   4689


Q ss_pred             CCCcCCCchhHHHHHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhh
Q 024972          201 PQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLN  255 (259)
Q Consensus       201 PqQ~Ng~DCGvfVL~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~  255 (259)
                      |||.||+|||+|||+||++++.+.+....+.          |+.+++..+|+++.
T Consensus       161 pqQ~n~~dCGv~vl~~~~~~~~~~~~~~~~~----------l~~~~i~~~r~~~a  205 (216)
T PF02902_consen  161 PQQPNGYDCGVYVLKFMECLLEGPSFDFSQE----------LTEEDIKNFRKKLA  205 (216)
T ss_dssp             -SSSSSSCHHHHHHHHHHHHHCTHHSTGCCS----------BTGHHHHHHHHHHH
T ss_pred             cCCCCCCCcHHHHHHHHHHHHhCCCCccccc----------CCHHHHHHHHHHHH
Confidence            9999999999999999999999986664432          56677777777765

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.2e-17  Score=166.80  Aligned_cols=168  Identities=25%  Similarity=0.428  Sum_probs=126.1

Q ss_pred             cceeccccccccCCCCCCHHHHHHHHHHHHhhhcc-cccCCeeeeeccccccccCCc------------chHHHHHHhhh
Q 024972           90 SSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSE-DKKAGFTYLDSLWFDLYRKPS------------SKAKVLTWIKR  156 (259)
Q Consensus        90 ~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~-~~~~~~~~~~s~FF~~~l~~~------------~~~~V~rw~k~  156 (259)
                      .+++..|+..|.++++|||-|++||++++...... .......+++++||+..+...            ...++++|++.
T Consensus       353 ~~v~~~Dl~cl~~~e~L~d~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~  432 (595)
T KOG0779|consen  353 HQVNNNDLVCLEEGEFLNDTIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRH  432 (595)
T ss_pred             cceeccchhhccccchhhhhhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeeeec
Confidence            38999999999999999999999999999875433 333566788888888865421            24568899999


Q ss_pred             cCCcccceEEEee---eccchhh------------------ccccCCchHH----Hh-----------h--h--------
Q 024972          157 KHIFSKKYVLVPI---VCWFVMD------------------IYKAEDRPET----KE-----------L--I--------  190 (259)
Q Consensus       157 ~~Lf~kd~IfIPI---~HW~vlD------------------sl~s~~~~e~----k~-----------~--i--------  190 (259)
                      +++|.++||++|+   .||..-.                  +...-.....    ..           .  .        
T Consensus       433 ~d~~~k~yi~~P~~E~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (595)
T KOG0779|consen  433 FDLFNKDYVFVPTHERFHWKLAIICNPDLETETPRPRLELLILKLSADFPIVENILDFMKVASIYNNELIVTEDLELEEE  512 (595)
T ss_pred             cccccceeEEecCchHhhhhccccccCccccCccccchhhhhhccccccchhhhhhhhhhhcccccCccccccccccccc
Confidence            9999999999999   8993211                  1000000000    00           0  0        


Q ss_pred             --cCCC---CCCCCCCCCcCCCchhHHHHHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhcc
Q 024972          191 --SRIP---LLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSE  258 (259)
Q Consensus       191 --~~i~---~~~~~~PqQ~Ng~DCGvfVL~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~~  258 (259)
                        .+.+   -.....|||.|..|||+|++.|++.+..++|..++..+...+.+. ||.|.++.+||+.+|.+.
T Consensus       513 ~~~~~~~~~s~~v~~p~q~n~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~-~~~~~~~~~~r~~~r~~~  584 (595)
T KOG0779|consen  513 LPRRLPRGKSETVREPQQNNDVDCGSFVLEFVERFIEDAPERFNIEDEGTINLE-WFPPKEILKFRDEIRNLG  584 (595)
T ss_pred             ccccCcccccccccccCccCcccchhhHHHHHHHhhhChhhhcccccccccccc-cCCchHHhhhhhhhhccc
Confidence              0111   011223999999999999999999999999999998888888877 999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	1e-12
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	4e-10
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	6e-10
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	5e-09
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	1e-08

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 64.8 bits (157), Expect = 1e-12
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 40/182 (21%)

Query: 98  ITKRKKNKLDSGKF--EHLLD---NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLT 152
           IT++    L+   +  + +++   N+    S++K     +  + +F    K +    V  
Sbjct: 46  ITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKR 105

Query: 153 WIKRKHIFSKKYVLVPIV---------------CWFVMDIYKAEDRPETKELISR----- 192
           W K+  +FS   +LVPI                     D     +    + L+       
Sbjct: 106 WTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQES 165

Query: 193 ---------------IPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFM 237
                                ++PQQ NG +CG F   + +   +  P NF  +  PYF 
Sbjct: 166 IDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFR 225

Query: 238 EK 239
           ++
Sbjct: 226 KR 227

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 58.3 bits (139), Expect = 4e-10
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 166 LVPIVCWFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAP 225
            V  +  ++   ++ + +   +   + +  L PKVP+Q N  +CG ++L ++  F +   
Sbjct: 222 TVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPI 281

Query: 226 ENFNLEDYPYFMEKNWFTAEDLDCFCERL 254
            NF L        + WF    +    E +
Sbjct: 282 VNFELP----IHLEKWFPRHVIKTKREDI 306

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 56.8 bits (136), Expect = 6e-10
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 36/198 (18%)

Query: 77  KCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSL 136
                 ++       +   D+ T +  + L+       ++ L     +          + 
Sbjct: 19  HGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTF 78

Query: 137 WFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIV---------------CWFVMDIYKAE 181
           ++   +    +  V  W K  ++F ++ +LVPI                C   +D    +
Sbjct: 79  FYPKLKSGGYQ-AVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQK 137

Query: 182 DRPETKEL--------------------ISRIPLLVPKVPQQRNGEECGNFVLYFINLFV 221
                + L                     +   +   ++PQQ NG +CG F   + +   
Sbjct: 138 GHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYIS 197

Query: 222 EGAPENFNLEDYPYFMEK 239
              P  F     P F +K
Sbjct: 198 RDKPITFTQHQMPLFRKK 215

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 33/187 (17%)

Query: 87  KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSS 146
              S ++  D+      + L+        +    S   D     +++        +  S+
Sbjct: 8   YMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSN 67

Query: 147 KAKVLTWIKRKHIFSKKYVLVPI----------------------VCWFVMDIYKAEDRP 184
            A++  +++   + +K+ V + I                        +F  D +   +  
Sbjct: 68  PAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSV 127

Query: 185 ETKELISRI-----------PLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDY 233
             K++  ++             +  K P Q+N  +CG +V+       +           
Sbjct: 128 HAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLL 187

Query: 234 PYFMEKN 240
                  
Sbjct: 188 QLLTPAY 194

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 36/175 (20%), Positives = 54/175 (30%), Gaps = 38/175 (21%)

Query: 98  ITKRKKNKLDSGKFEHLLDNLWRSFSE--DKKAGFTYLDSLWFDLYRKPSSKAKVLTWIK 155
           IT R    L   ++  L D +   F +  +K    T   + +F           V  W+K
Sbjct: 35  ITVRDFKTLAPRRW--LNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMK 92

Query: 156 RKH--IFSKKYVLVPIVC----WFVMDIYKAEDRP------------------------- 184
           RK   I     +  PI      W +  I   +                            
Sbjct: 93  RKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYV 152

Query: 185 --ETKELISR-IPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYF 236
             E+K  I     L+    PQQ NG +CG +V          AP +F+ +D    
Sbjct: 153 MEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRM 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	100.0
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	100.0
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	100.0
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.98
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.95

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.5e-37  Score=286.04  Aligned_cols=171  Identities=23%  Similarity=0.398  Sum_probs=131.8

Q ss_pred             ccCCCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCc----------------c
Q 024972           83 LIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPS----------------S  146 (259)
Q Consensus        83 ~~~~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~----------------~  146 (259)
                      |..++.+++|+.+|+.+|.+++||||+||||||+||..+.........+|++|+||++.|...                +
T Consensus        26 ~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~  105 (323)
T 3eay_A           26 PPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRR  105 (323)
T ss_dssp             CTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHH
T ss_pred             CCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccchhHHHH
Confidence            345789999999999999999999999999999999654433222345778888888877532                4


Q ss_pred             hHHHHHHhhhcCCcccceEEEee---eccch-------------------------------------------------
Q 024972          147 KAKVLTWIKRKHIFSKKYVLVPI---VCWFV-------------------------------------------------  174 (259)
Q Consensus       147 ~~~V~rw~k~~~Lf~kd~IfIPI---~HW~v-------------------------------------------------  174 (259)
                      |.+|++|+++++||++|+|||||   .||++                                                 
T Consensus       106 y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  185 (323)
T 3eay_A          106 HKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLS  185 (323)
T ss_dssp             HTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------------
T ss_pred             HHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999   89932                                                 


Q ss_pred             ----------------------hhccccCCch---------------HHHhhh--------cCCCCCCCCCCCCcCCCch
Q 024972          175 ----------------------MDIYKAEDRP---------------ETKELI--------SRIPLLVPKVPQQRNGEEC  209 (259)
Q Consensus       175 ----------------------lDsl~s~~~~---------------e~k~~i--------~~i~~~~~~~PqQ~Ng~DC  209 (259)
                                            |-+|||++..               |++.+-        ..++...+++|||.||+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DC  265 (323)
T 3eay_A          186 AEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDC  265 (323)
T ss_dssp             --------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCH
T ss_pred             cccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcH
Confidence                                  1122343321               111110        0122235789999999999


Q ss_pred             hHHHHHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhc
Q 024972          210 GNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS  257 (259)
Q Consensus       210 GvfVL~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~  257 (259)
                      |||||+||++|+.++|.+|++   |.. ..+||+|++|.++|++|++|
T Consensus       266 Gvfvl~~~e~~~~~~~~~f~~---~~~-~~~wf~~~~i~~kR~ei~~L  309 (323)
T 3eay_A          266 GVYLLQYVESFFKDPIVNFEL---PIH-LEKWFPRHVIKTKREDIREL  309 (323)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCS---SCB-CTTSSCHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcccccc---ccc-cccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999985   333 36899999999999999875

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=100.00  E-value=3.5e-35  Score=260.61  Aligned_cols=152  Identities=25%  Similarity=0.395  Sum_probs=120.2

Q ss_pred             CCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (259)
Q Consensus        87 k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If  166 (259)
                      +..++|+.+|+.+|.+++||||+|||||+++|.+.... ...+.++++++||++.+...+|+.|++|+++++||++++||
T Consensus        41 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~-~~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~  119 (238)
T 2xph_A           41 AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE-KGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILL  119 (238)
T ss_dssp             ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTS-TTSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEE
T ss_pred             CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhh-cCCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCEEE
Confidence            44678999999999999999999999999999764432 22345777888888777777899999999999999999999


Q ss_pred             Eee---eccchh---------hccccCCchHH---Hhh---h-------cCCC----------CCCCCCCCCcCCCchhH
Q 024972          167 VPI---VCWFVM---------DIYKAEDRPET---KEL---I-------SRIP----------LLVPKVPQQRNGEECGN  211 (259)
Q Consensus       167 IPI---~HW~vl---------Dsl~s~~~~e~---k~~---i-------~~i~----------~~~~~~PqQ~Ng~DCGv  211 (259)
                      |||   +||+++         -+|||++....   +.+   +       .+.+          ....++|||.||+||||
T Consensus       120 iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGv  199 (238)
T 2xph_A          120 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGM  199 (238)
T ss_dssp             EEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHH
T ss_pred             EcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHH
Confidence            999   899421         13444433211   110   0       1111          13578999999999999


Q ss_pred             HHHHHHHHHhcCCCCccCCCCCcchhhc
Q 024972          212 FVLYFINLFVEGAPENFNLEDYPYFMEK  239 (259)
Q Consensus       212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~  239 (259)
                      |||+||++++.+.|.+|+|+|||+||++
T Consensus       200 fvl~~~e~~~~~~~~~f~q~dm~~~R~~  227 (238)
T 2xph_A          200 FACKYADCITKDRPINFTQQHMPYFRKR  227 (238)
T ss_dssp             HHHHHHHHHHTTCCCCCCGGGHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcChhhHHHHHHH
Confidence            9999999999999999999999999976

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=100.00  E-value=3e-35  Score=258.99  Aligned_cols=153  Identities=21%  Similarity=0.306  Sum_probs=119.3

Q ss_pred             CCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (259)
Q Consensus        87 k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If  166 (259)
                      +..++|+.+|+.+|.+++||||+|||||+++|.+....+ ..+.++++++||+..+...++++|++|+++++||++++||
T Consensus        29 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~-~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~  107 (226)
T 1th0_A           29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIIL  107 (226)
T ss_dssp             ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH-TCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEE
T ss_pred             cCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc-cCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEE
Confidence            346789999999999999999999999999997643322 2334667778888777667889999999999999999999


Q ss_pred             Eee---eccc------------hhhccccCCchH-----------HHhhh------cCCC---CCCCCCCCCcCCCchhH
Q 024972          167 VPI---VCWF------------VMDIYKAEDRPE-----------TKELI------SRIP---LLVPKVPQQRNGEECGN  211 (259)
Q Consensus       167 IPI---~HW~------------vlDsl~s~~~~e-----------~k~~i------~~i~---~~~~~~PqQ~Ng~DCGv  211 (259)
                      |||   +||+            ++||+.+.....           ++.+.      ..+.   +...++|||.||+||||
T Consensus       108 iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGv  187 (226)
T 1th0_A          108 VPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGM  187 (226)
T ss_dssp             EEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHH
T ss_pred             EeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHH
Confidence            999   8994            334443322111           11110      0111   13579999999999999


Q ss_pred             HHHHHHHHHhcCCCCccCCCCCcchhhcC
Q 024972          212 FVLYFINLFVEGAPENFNLEDYPYFMEKN  240 (259)
Q Consensus       212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~~  240 (259)
                      |||+||++++.+.|.+|+|+|||+||+++
T Consensus       188 fvl~~~~~~~~~~~~~f~q~dm~~~R~~~  216 (226)
T 1th0_A          188 FTCKYADYISRDKPITFTQHQMPLFRKKM  216 (226)
T ss_dssp             HHHHHHHHHTTTCCCCCCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCccChhhHHHHHHHH
Confidence            99999999999999999999999999763

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=100.00  E-value=2.7e-33  Score=244.03  Aligned_cols=162  Identities=14%  Similarity=0.209  Sum_probs=120.1

Q ss_pred             CccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeec--cccccccCCcchHHHHHHhhhcCCcccceE
Q 024972           88 NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDS--LWFDLYRKPSSKAKVLTWIKRKHIFSKKYV  165 (259)
Q Consensus        88 ~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s--~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~I  165 (259)
                      ..++|+.+|+.+|.+++||||+|||||++||.+....+....++++++  +||+..+.  +++.|++|+++++++++++|
T Consensus         9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~--~~~~v~~~~~~~~l~~~~~i   86 (212)
T 2bkr_A            9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS--NPAEIAMFLEPLDLPNKRVV   86 (212)
T ss_dssp             TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC--CHHHHHHHHGGGTGGGCSEE
T ss_pred             CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC--CHHHHHHHhcccccccCCEE
Confidence            357899999999999999999999999999987654333333444442  66666543  47889999999999999999


Q ss_pred             EEee----------eccchh---------hccccCCchHH---Hhhh-----------cCCCCCCCCCCCCcCCCchhHH
Q 024972          166 LVPI----------VCWFVM---------DIYKAEDRPET---KELI-----------SRIPLLVPKVPQQRNGEECGNF  212 (259)
Q Consensus       166 fIPI----------~HW~vl---------Dsl~s~~~~e~---k~~i-----------~~i~~~~~~~PqQ~Ng~DCGvf  212 (259)
                      ||||          +||+++         -.|||++....   +.+.           .+..+...++|||.||+|||||
T Consensus        87 ~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~~~~~~~~~~PqQ~N~~DCGvf  166 (212)
T 2bkr_A           87 FLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMY  166 (212)
T ss_dssp             EEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHH
T ss_pred             EEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccccceEeECCCCCCCCCCcHHHH
Confidence            9999          599421         13455543322   1111           1122456899999999999999


Q ss_pred             HHHHHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhc
Q 024972          213 VLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS  257 (259)
Q Consensus       213 VL~~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~  257 (259)
                      ||+||++++.+....   +.   +....||+++++.++|++|.++
T Consensus       167 vl~~~~~l~~~~~~~---~~---~~~~~~~~~~~i~~~R~~i~~l  205 (212)
T 2bkr_A          167 VICNTEALCQNFFRQ---QT---ESLLQLLTPAYITKKRGEWKDL  205 (212)
T ss_dssp             HHHHHHHHHHHHHSC---CC---CCHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhc---Cc---ccccccCCHHHHHHHHHHHHHH
Confidence            999999999986221   11   1135899999999999998764

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.98  E-value=8.5e-34  Score=249.17  Aligned_cols=147  Identities=19%  Similarity=0.281  Sum_probs=112.8

Q ss_pred             CCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhh--hcCCcccc
Q 024972           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIK--RKHIFSKK  163 (259)
Q Consensus        86 ~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k--~~~Lf~kd  163 (259)
                      ++..++|+.+|+.+|.+++||||+|||||++||.+..      +.++++++||+..+...+|+.|++|++  ++++|+++
T Consensus        29 ~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~------~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~  102 (221)
T 1euv_A           29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST------PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLD  102 (221)
T ss_dssp             EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS------TTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCS
T ss_pred             cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC------CCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCC
Confidence            4567899999999999999999999999999997543      124566777777776678999999998  67999999


Q ss_pred             eEEEee----eccc------------hhhccccCCchHH-------Hhhh-----c----CCCCCCCCCCCCcCCCchhH
Q 024972          164 YVLVPI----VCWF------------VMDIYKAEDRPET-------KELI-----S----RIPLLVPKVPQQRNGEECGN  211 (259)
Q Consensus       164 ~IfIPI----~HW~------------vlDsl~s~~~~e~-------k~~i-----~----~i~~~~~~~PqQ~Ng~DCGv  211 (259)
                      +|||||    +||+            ++||+........       +..+     .    .+++...++|||.||+||||
T Consensus       103 ~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGv  182 (221)
T 1euv_A          103 KIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGI  182 (221)
T ss_dssp             EEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHH
T ss_pred             EEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHH
Confidence            999999    6994            3344432222211       0101     1    12234578999999999999


Q ss_pred             HHHHHHHHHhcCCCCccCCCCCcchhh
Q 024972          212 FVLYFINLFVEGAPENFNLEDYPYFME  238 (259)
Q Consensus       212 fVL~~a~~l~~~~p~~f~~~dmp~fr~  238 (259)
                      |||+||++++.+.|.+|+++|||.+|+
T Consensus       183 fv~~~~~~~~~~~~l~f~~~d~~~~R~  209 (221)
T 1euv_A          183 YVCMNTLYGSADAPLDFDYKDAIRMRR  209 (221)
T ss_dssp             HHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCHHHHHHHHH
Confidence            999999999999988877777776664

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.95  E-value=4.4e-29  Score=214.33  Aligned_cols=147  Identities=15%  Similarity=0.173  Sum_probs=94.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhhcccccCCeeeeecc---ccccccCCcchHHHHHHhhhcCCcccceEEEee----eccch
Q 024972          102 KKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSL---WFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPI----VCWFV  174 (259)
Q Consensus       102 ~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~---FF~~~l~~~~~~~V~rw~k~~~Lf~kd~IfIPI----~HW~v  174 (259)
                      +++||||+|||||++||.+..........++|.++   ||.......++.++.+|++..++  +++|||||    +||++
T Consensus         1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsL   78 (186)
T 2oix_A            1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAHWSL   78 (186)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEE
T ss_pred             CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCccEE
Confidence            47899999999999999876543322232455553   33333322345677788776665  99999999    69942


Q ss_pred             ---------h---hccccCCchH--HHhhh---------cCCCCCCCCCCCCcCCCchhHHHHHHHHHHhcCCCCccCCC
Q 024972          175 ---------M---DIYKAEDRPE--TKELI---------SRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLE  231 (259)
Q Consensus       175 ---------l---Dsl~s~~~~e--~k~~i---------~~i~~~~~~~PqQ~Ng~DCGvfVL~~a~~l~~~~p~~f~~~  231 (259)
                               +   -.|||++...  .+.+.         ...++...++|||.||||||||||+||++++++....    
T Consensus        79 lvi~~~~~~~~~~~~~DSl~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~----  154 (186)
T 2oix_A           79 LVVDRRNKDAVAAYHYDSMAQKDPQQRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDG----  154 (186)
T ss_dssp             EEEECSSTTSCEEEEECCCSSCCHHHHHHHHHHHHHTTCCGGGCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHT----
T ss_pred             EEEECCCCeeeeeEEEcCCCCCCHHHHHHHHHHHHHhCCCccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc----
Confidence                     2   2355554422  11111         1123456789999999999999999999999753110    


Q ss_pred             CCcchhhcCCcChHhHHHHHHHhhhc
Q 024972          232 DYPYFMEKNWFTAEDLDCFCERLNSS  257 (259)
Q Consensus       232 dmp~fr~~~wF~~e~~~~~r~~l~~~  257 (259)
                      ..   ....||+++++.++|++|.++
T Consensus       155 ~~---~~~~~~~~~~i~~~R~~i~~l  177 (186)
T 2oix_A          155 TF---DYAGGRDLTDIEPDRGLIRDR  177 (186)
T ss_dssp             CT---TSTTTTCBTTCCCCHHHHHHH
T ss_pred             Cc---cCCCcCCHHHHHHHHHHHHHH
Confidence            00   113688999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	1e-13
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	8e-12
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	5e-09
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	5e-06

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 36/192 (18%)

Query: 83  LIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYR 142
           ++      ++  KD+ T    N L+       ++ L     E         ++ +F    
Sbjct: 25  VLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKL- 83

Query: 143 KPSSKAKVLTWIKRKHIFSKKYVLVPIVC------------------------------- 171
           K +    V  W K+  +FS   +LVPI                                 
Sbjct: 84  KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR 143

Query: 172 ----WFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPEN 227
               +   +    + +               ++PQQ NG + G F   + +   +  P N
Sbjct: 144 ILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPIN 203

Query: 228 FNLEDYPYFMEK 239
           F  +  PYF ++
Sbjct: 204 FTQQHMPYFRKR 215

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 8e-12
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 40/182 (21%)

Query: 98  ITKRKKNKLDSGKF--EHLLD---NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLT 152
           IT+     L +  +  + +++   NL    ++ +     ++ S +F    K      V  
Sbjct: 34  ITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKR 93

Query: 153 WIKRKHIFSKKYVLVPIVC---WFVMDIYKAE---------------------------- 181
           W K  ++F ++ +LVPI     W ++ I   +                            
Sbjct: 94  WTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDES 153

Query: 182 ----DRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFM 237
               +        +   +   ++PQQ NG +CG F   + +      P  F     P F 
Sbjct: 154 KTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFR 213

Query: 238 EK 239
           +K
Sbjct: 214 KK 215

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 5e-09
 Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 40/198 (20%)

Query: 73  KRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTY 132
           ++ +  +  + +  +++  +  +D  T   +  L+    E  +  + +S         T 
Sbjct: 16  QKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPN------TV 69

Query: 133 LDSLWFDLYRKPSSKAKVLTWIKRK--HIFSKKYVLVPIVC----------------WFV 174
             + +F           V  W+KRK   I     +  PI                     
Sbjct: 70  AFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGY 129

Query: 175 MDIYKAEDRPETKELISRI----------------PLLVPKVPQQRNGEECGNFVLYFIN 218
           +D         +  +++ +                 L+    PQQ NG +CG +V     
Sbjct: 130 VDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTL 189

Query: 219 LFVEGAPENFNLEDYPYF 236
                AP +F+ +D    
Sbjct: 190 YGSADAPLDFDYKDAIRM 207

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 17/155 (10%), Positives = 44/155 (28%), Gaps = 33/155 (21%)

Query: 118 LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPI-------- 169
              S   D     +++        +  S+ A++  +++   + +K+ V + I        
Sbjct: 39  FANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAA 98

Query: 170 --------------VCWFVMDIYKAEDRPETKELISRI-----------PLLVPKVPQQR 204
                           +F  D +   +    K++  ++             +  K P Q+
Sbjct: 99  GGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQ 158

Query: 205 NGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 239
           N  +CG +V+       +                 
Sbjct: 159 NSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPA 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.97
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.97
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.97
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.97

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-33  Score=240.80  Aligned_cols=148  Identities=19%  Similarity=0.270  Sum_probs=114.9

Q ss_pred             CCCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHh--hhcCCcccc
Q 024972           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWI--KRKHIFSKK  163 (259)
Q Consensus        86 ~k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~--k~~~Lf~kd  163 (259)
                      .+..+.|+..|+.+|.|++||||+|||||++||.+..+      ..+++++||+..+...++..+++|+  ++.++++++
T Consensus        29 ~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~~------~~~~~~s~f~~~l~~~~~~~~~~w~~~~~~~~~~~~  102 (221)
T d1euva_          29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTP------NTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLD  102 (221)
T ss_dssp             EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHST------TEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCS
T ss_pred             ecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcCC------CeEEeccHHHHhHhhhchHHHHHHHHhcccchhhcc
Confidence            45678999999999999999999999999999965432      2456677777766667889999999  557899999


Q ss_pred             eEEEee----eccc------------hhhccccCCchHHHhh-------h---------cCCCCCCCCCCCCcCCCchhH
Q 024972          164 YVLVPI----VCWF------------VMDIYKAEDRPETKEL-------I---------SRIPLLVPKVPQQRNGEECGN  211 (259)
Q Consensus       164 ~IfIPI----~HW~------------vlDsl~s~~~~e~k~~-------i---------~~i~~~~~~~PqQ~Ng~DCGv  211 (259)
                      +|||||    +||+            ++||+.+.........       +         ..+++...++|||.||+||||
T Consensus       103 ~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~PqQ~N~~DCGv  182 (221)
T d1euva_         103 KIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGI  182 (221)
T ss_dssp             EEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHH
T ss_pred             eeEeeEecccceEEEEEeeccccceeeeccccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCCeeeeccCCCCCCCCChHH
Confidence            999999    7994            3344433222221111       0         112334568999999999999


Q ss_pred             HHHHHHHHHhcCCCCccCCCCCcchhhc
Q 024972          212 FVLYFINLFVEGAPENFNLEDYPYFMEK  239 (259)
Q Consensus       212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~  239 (259)
                      |||+||++++.+.|.+|+|+|||.+|+.
T Consensus       183 fvl~~~~~~~~~~~~~~~q~d~~~~R~~  210 (221)
T d1euva_         183 YVCMNTLYGSADAPLDFDYKDAIRMRRF  210 (221)
T ss_dssp             HHHHHHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence            9999999999999999999999888863

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-32  Score=236.12  Aligned_cols=153  Identities=20%  Similarity=0.304  Sum_probs=120.5

Q ss_pred             CCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (259)
Q Consensus        87 k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If  166 (259)
                      +..++|+.+|+.+|.+++||||+|||||+++|.+...+. ....++++++||+..+...++..+++|++..+++++++||
T Consensus        29 ~~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~-~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~~~i~  107 (226)
T d1th0a_          29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIIL  107 (226)
T ss_dssp             ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH-TCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEE
T ss_pred             cCCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhc-cCCceEEecHHHHHHHhhccHHHHHHHHhccCcccCCEEE
Confidence            457899999999999999999999999999997654432 2334677788888877777899999999999999999999


Q ss_pred             Eee---eccchh---------hccccCCchHH---Hh-----------hh---------cCCCCCCCCCCCCcCCCchhH
Q 024972          167 VPI---VCWFVM---------DIYKAEDRPET---KE-----------LI---------SRIPLLVPKVPQQRNGEECGN  211 (259)
Q Consensus       167 IPI---~HW~vl---------Dsl~s~~~~e~---k~-----------~i---------~~i~~~~~~~PqQ~Ng~DCGv  211 (259)
                      |||   +||+++         .+|||.+....   ..           ..         ...+..+.++|||.||+||||
T Consensus       108 iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~N~~DCGv  187 (226)
T d1th0a_         108 VPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGM  187 (226)
T ss_dssp             EEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHH
T ss_pred             EeEEcCCceEEEEEEeccceEEEeccccCCChHHHHHHHHHHHHHHHHhhCCCcCcccceeeeeccCCCCCCCCCCCHHH
Confidence            999   899421         23444432211   11           00         011234688999999999999


Q ss_pred             HHHHHHHHHhcCCCCccCCCCCcchhhcC
Q 024972          212 FVLYFINLFVEGAPENFNLEDYPYFMEKN  240 (259)
Q Consensus       212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~~  240 (259)
                      |||+||++++.+.+.+|+|++|+.+|+++
T Consensus       188 fvl~~~~~~~~~~~~~~tq~di~~~R~~i  216 (226)
T d1th0a_         188 FTCKYADYISRDKPITFTQHQMPLFRKKM  216 (226)
T ss_dssp             HHHHHHHHHTTTCCCCCCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999999998754

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=230.24  Aligned_cols=163  Identities=13%  Similarity=0.213  Sum_probs=118.4

Q ss_pred             ccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEEEe
Q 024972           89 SSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVP  168 (259)
Q Consensus        89 ~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~IfIP  168 (259)
                      .+.|+.+|+++|.+++||||+|||||+++|...........+++++++++.......+++.+.+|++..+++++++||||
T Consensus        10 d~~l~~~D~~~L~~~~WLND~iId~y~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifiP   89 (212)
T d2bkra1          10 DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLA   89 (212)
T ss_dssp             TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEE
T ss_pred             CeeeeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhhccccCcEEEEChHHHHHHhccccHHHHHHHHhccChhhccEEEEe
Confidence            45699999999999999999999999999976544333344555544444444445678999999999999999999999


Q ss_pred             e----------eccchh---------hccccCCch---HHHhhh-----------cCCCCCCCCCCCCcCCCchhHHHHH
Q 024972          169 I----------VCWFVM---------DIYKAEDRP---ETKELI-----------SRIPLLVPKVPQQRNGEECGNFVLY  215 (259)
Q Consensus       169 I----------~HW~vl---------Dsl~s~~~~---e~k~~i-----------~~i~~~~~~~PqQ~Ng~DCGvfVL~  215 (259)
                      |          +||+++         -+|||++..   ..+.+.           ..+.+....+|||.||+|||||||+
T Consensus        90 In~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~Q~N~~DCGvfv~~  169 (212)
T d2bkra1          90 INDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVIC  169 (212)
T ss_dssp             EECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHHHHH
T ss_pred             cccccccccCcceeeeeeeccccceEEEecCCCcCCHHHHHHHHHHHHHHhccccCceeeeecccCCCCCCCChHHHHHH
Confidence            9          399421         134444332   222211           1233346889999999999999999


Q ss_pred             HHHHHhcCCCCccCCCCCcchhhcCCcChHhHHHHHHHhhhc
Q 024972          216 FINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS  257 (259)
Q Consensus       216 ~a~~l~~~~p~~f~~~dmp~fr~~~wF~~e~~~~~r~~l~~~  257 (259)
                      ||++++.+.......    .+  ..+++++++.++|++|.++
T Consensus       170 ~~~~l~~~~~~~~~~----~~--~~~~~~~~i~~~R~~l~~l  205 (212)
T d2bkra1         170 NTEALCQNFFRQQTE----SL--LQLLTPAYITKKRGEWKDL  205 (212)
T ss_dssp             HHHHHHHHHHSCCCC----CH--HHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccch----hh--hhcCCHHHHHHHHHHHHHH
Confidence            999999765333222    12  2688999999999999765

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=231.41  Aligned_cols=153  Identities=23%  Similarity=0.339  Sum_probs=117.7

Q ss_pred             CCccceeccccccccCCCCCCHHHHHHHHHHHHhhhcccccCCeeeeeccccccccCCcchHHHHHHhhhcCCcccceEE
Q 024972           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (259)
Q Consensus        87 k~~~si~~~Dl~~L~~~~WLND~IInfYle~L~~~~~~~~~~~~~~~~s~FF~~~l~~~~~~~V~rw~k~~~Lf~kd~If  166 (259)
                      ...++|+.+|+.+|.+++||||.|||||+++|.+...+.....+ ++++++|+......++..+++|+++.+++++++||
T Consensus        29 ~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~l~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~  107 (225)
T d2iy1a1          29 AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV-HAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILL  107 (225)
T ss_dssp             ETTEEEEHHHHHTTSTTCCCBHHHHHHHHHHHHHHTTSTTSCCE-EECCTTHHHHHHHSCGGGTGGGGTTCCGGGSSEEE
T ss_pred             cCCceeeHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhhccCce-EEeccHHHhhhcccCHHHHHHHHhccccccCCEEE
Confidence            44678999999999999999999999999999776554443444 45556666555566789999999999999999999


Q ss_pred             Eee---eccc------------hhhccccCCchHHHhh-----------h-c-----C---CCCCCCCCCCCcCCCchhH
Q 024972          167 VPI---VCWF------------VMDIYKAEDRPETKEL-----------I-S-----R---IPLLVPKVPQQRNGEECGN  211 (259)
Q Consensus       167 IPI---~HW~------------vlDsl~s~~~~e~k~~-----------i-~-----~---i~~~~~~~PqQ~Ng~DCGv  211 (259)
                      |||   .||+            ++||+.+......+..           . .     .   ......++|||.||+||||
T Consensus       108 iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~Ng~DCGv  187 (225)
T d2iy1a1         108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGM  187 (225)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCCCTTCEEEECCTTTSCCCCSSSTHHH
T ss_pred             EEEeCCCCEEEEEEEeccceEEEEecCCCCchHHHHHHHHHHHHHHHHhccCccCcccceecccccccCCCCCCCCChHH
Confidence            999   8994            3344433222111110           0 0     1   1234679999999999999


Q ss_pred             HHHHHHHHHhcCCCCccCCCCCcchhhcC
Q 024972          212 FVLYFINLFVEGAPENFNLEDYPYFMEKN  240 (259)
Q Consensus       212 fVL~~a~~l~~~~p~~f~~~dmp~fr~~~  240 (259)
                      |||+||++++.+.|.+|++++|++||+++
T Consensus       188 fvl~~~~~~~~~~~~~~~q~~~~~~R~~~  216 (225)
T d2iy1a1         188 FACKYADCITKDRPINFTQQHMPYFRKRM  216 (225)
T ss_dssp             HHHHHHHHHHTTCCCCCCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999999998753