Citrus Sinensis ID: 024999

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC
ccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHcccccccc
ccHHHHHHHHHHHcHHHccHHHHHHHHHHHHHcccHHHHHccEEEEcccccccccccEEEccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHHccccccccccccEEEEEcEccccccccccHHHHccccccccHHHHHHHHHcccEEEEEccccHHccccccccccccccccHcccccccccHHHHHHHHccccEccc
mhasqlkctfelldsnffnERKVLEIAkgatefnlpIIRANRKLIasengglhnpsvltfnpdwgteqEQEASKifnypsisdiqkpeneeDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQgkylgplhgipyglkdiiavpqykttwgsttfknQVLNTEAWVYKRLKSAGAVLVAKLVSGslayddiwfggrtrnpwnieefstgssagpaactSAGILLFSYC
mhasqlkctfelldsnffNERKVLEIakgatefnlpIIRANRKLIASENGGLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGAlirtkqitseeLTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEfstgssagpaaCTSAGILLFSYC
MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC
*****LKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFNPDWG*********IFNY*************DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSY*
*******CTFELLDSNFFNERKVLEIAKGATEFNLPIIRAN**********LHNPSVLTFNPDWG***************************IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC
MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC
MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTG*************L**SYC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
Q3ZYM5 486 Glutamyl-tRNA(Gln) amidot yes no 0.629 0.335 0.350 4e-21
A5FQ07 486 Glutamyl-tRNA(Gln) amidot yes no 0.629 0.335 0.350 7e-21
Q3Z6V3 486 Glutamyl-tRNA(Gln) amidot yes no 0.629 0.335 0.356 7e-21
Q31F53 484 Glutamyl-tRNA(Gln) amidot yes no 0.606 0.324 0.372 2e-19
B2V855 485 Glutamyl-tRNA(Gln) amidot yes no 0.598 0.319 0.345 9e-19
Q60CK8 485 Glutamyl-tRNA(Gln) amidot yes no 0.525 0.280 0.378 4e-18
A5EY31 487 Glutamyl-tRNA(Gln) amidot yes no 0.548 0.291 0.358 4e-17
Q83BM9 483 Glutamyl-tRNA(Gln) amidot yes no 0.528 0.283 0.377 5e-17
A9N8Z4 483 Glutamyl-tRNA(Gln) amidot yes no 0.528 0.283 0.377 5e-17
A9KBI0 483 Glutamyl-tRNA(Gln) amidot yes no 0.528 0.283 0.377 5e-17
>sp|Q3ZYM5|GATA_DEHSC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1 Back     alignment and function desciption
 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 8/171 (4%)

Query: 92  DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
           D+  +++ +   L++ ++I+S ELT+  L+R+++  P ++A +T   E A  QA+ AD+ 
Sbjct: 3   DLVKLTIAQSHKLLKDRKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAADKA 62

Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
           + QG  + PL GIP  LKD++     +TT  S   +N V    A V  +L   GAVL+ K
Sbjct: 63  IKQGD-IRPLTGIPMALKDVLCTKGIRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGK 121

Query: 212 -----LVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
                   GS   +  +F   TRNPWN ++   GSS G AAC +A   +FS
Sbjct: 122 TNMDEFAMGSSTENSAYF--TTRNPWNTDKVPGGSSGGSAACVAASEAVFS 170
Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Dehalococcoides sp. (strain CBDB1) (taxid: 255470)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -
>sp|A5FQ07|GATA_DEHSB Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3Z6V3|GATA_DEHE1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q31F53|GATA_THICR Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B2V855|GATA_SULSY Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q60CK8|GATA_METCA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5EY31|GATA_DICNV Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dichelobacter nodosus (strain VCS1703A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q83BM9|GATA_COXBU Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A9N8Z4|GATA_COXBR Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A9KBI0|GATA_COXBN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
356512926 603 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.992 0.426 0.758 1e-112
449460517 591 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.980 0.429 0.748 1e-110
224136372 540 predicted protein [Populus trichocarpa] 0.949 0.455 0.780 1e-110
296090171 625 unnamed protein product [Vitis vinifera] 0.972 0.403 0.753 1e-110
312282771 663 unnamed protein product [Thellungiella h 0.992 0.387 0.743 1e-110
359489090 613 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.972 0.411 0.753 1e-110
297810845 622 amidase family protein [Arabidopsis lyra 0.992 0.413 0.735 1e-109
42567719 659 Amidase family protein [Arabidopsis thal 0.992 0.389 0.735 1e-109
145334317 652 Amidase family protein [Arabidopsis thal 0.972 0.386 0.746 1e-108
110736857 652 putative amidase [Arabidopsis thaliana] 0.972 0.386 0.742 1e-107
>gi|356512926|ref|XP_003525165.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/257 (75%), Positives = 227/257 (88%)

Query: 2   HASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTFN 61
           + S L C F LLD+NFF ++++ EIA+GA EFN+PIIRANRKL+ASENG LH PS L FN
Sbjct: 66  YVSSLGCFFGLLDANFFEDKQIGEIAEGANEFNIPIIRANRKLVASENGELHYPSPLVFN 125

Query: 62  PDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLK 121
            DW ++     +K FNYPSIS IQ PE+EEDIAFMSVLELG LI+TKQITS ELT+IFL+
Sbjct: 126 ADWNSQPTHFENKSFNYPSISGIQSPESEEDIAFMSVLELGELIKTKQITSLELTQIFLR 185

Query: 122 RLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTW 181
           RLK+YNP LEAVVTYT+ELA++QAKEAD+LL++G YLGPLHGIPYGLKDII+VP+YKTTW
Sbjct: 186 RLKKYNPTLEAVVTYTEELAHEQAKEADKLLSRGVYLGPLHGIPYGLKDIISVPKYKTTW 245

Query: 182 GSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGS 241
           GS +FKNQV++ EAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGS
Sbjct: 246 GSKSFKNQVIDVEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGS 305

Query: 242 SAGPAACTSAGILLFSY 258
           SAGPAA TSAG++ F++
Sbjct: 306 SAGPAASTSAGMVPFAF 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449460517|ref|XP_004147992.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Cucumis sativus] gi|449494345|ref|XP_004159520.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224136372|ref|XP_002322313.1| predicted protein [Populus trichocarpa] gi|222869309|gb|EEF06440.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296090171|emb|CBI39990.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|312282771|dbj|BAJ34251.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|359489090|ref|XP_002270353.2| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297810845|ref|XP_002873306.1| amidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319143|gb|EFH49565.1| amidase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567719|ref|NP_196353.2| Amidase family protein [Arabidopsis thaliana] gi|332003759|gb|AED91142.1| Amidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145334317|ref|NP_001078540.1| Amidase family protein [Arabidopsis thaliana] gi|332003760|gb|AED91143.1| Amidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110736857|dbj|BAF00386.1| putative amidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2183374 659 AT5G07360 "AT5G07360" [Arabido 0.992 0.389 0.735 4.4e-100
TIGR_CMR|DET_1335 486 DET_1335 "glutamyl-tRNA(Gln) a 0.629 0.335 0.356 1e-20
TIGR_CMR|CBU_1474 483 CBU_1474 "glutamyl-tRNA(Gln) a 0.602 0.322 0.376 1.3e-20
TIGR_CMR|CHY_1102 485 CHY_1102 "glutamyl-tRNA(Gln) a 0.621 0.331 0.341 1.7e-20
UNIPROTKB|P63496 475 amiD "Putative amidase AmiD" [ 0.644 0.351 0.360 5.7e-20
ZFIN|ZDB-GENE-030131-5540 536 qrsl1 "glutaminyl-tRNA synthas 0.521 0.251 0.349 5.6e-16
TIGR_CMR|GSU_3381 485 GSU_3381 "glutamyl-tRNA(Gln) a 0.594 0.317 0.343 6.7e-16
FB|FBgn0038803 552 CG5191 [Drosophila melanogaste 0.675 0.317 0.305 8.9e-16
TIGR_CMR|SPO_2938 476 SPO_2938 "amidase family prote 0.610 0.331 0.304 3.7e-15
UNIPROTKB|Q8EIF1 568 aguB "N-carbamoyl-putrescine a 0.633 0.288 0.323 8.8e-15
TAIR|locus:2183374 AT5G07360 "AT5G07360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 189/257 (73%), Positives = 221/257 (85%)

Query:     1 MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIASENGGLHNPSVLTF 60
             M A  L+  FEL+DS FFNE K+ EIAKGATE N+PI RANRKL+A++NGGL NPS L F
Sbjct:   108 MEAKCLQGMFELIDSAFFNETKLQEIAKGATEMNVPIYRANRKLVATKNGGLENPSPLVF 167

Query:    61 NPDWGTEQEQEASKIFNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFL 120
             NP W  E ++   K F YPS S ++ P +EEDIAFMSVLELG LI+T+QITS+EL RI+L
Sbjct:   168 NPSWNREVQRVQDKRFKYPSASGVKLPRDEEDIAFMSVLELGELIKTRQITSKELVRIYL 227

Query:   121 KRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTT 180
             K+LKRYN  LEAVVTYT+ELAY+QAKEAD+LL+QG YLGPLHGIPYGLKDI+AVP YKTT
Sbjct:   228 KQLKRYNHVLEAVVTYTEELAYKQAKEADDLLSQGTYLGPLHGIPYGLKDIVAVPGYKTT 287

Query:   181 WGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTG 240
             WGST+FK+Q L+ EAWVYKRLK++GAVLVAKLV+GS+AYDDIWFGGRTRNPWNIEEFSTG
Sbjct:   288 WGSTSFKDQFLDIEAWVYKRLKASGAVLVAKLVTGSMAYDDIWFGGRTRNPWNIEEFSTG 347

Query:   241 SSAGPAACTSAGILLFS 257
             SSAGPAA TSAG++ F+
Sbjct:   348 SSAGPAASTSAGMVPFA 364
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006869 "lipid transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0009062 "fatty acid catabolic process" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
TIGR_CMR|DET_1335 DET_1335 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P63496 amiD "Putative amidase AmiD" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5540 qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3381 GSU_3381 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
FB|FBgn0038803 CG5191 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2938 SPO_2938 "amidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EIF1 aguB "N-carbamoyl-putrescine amidase AguB" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
pfam01425 431 pfam01425, Amidase, Amidase 1e-46
COG0154 475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 3e-44
PRK00012 459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 2e-31
PRK07486 484 PRK07486, PRK07486, amidase; Provisional 8e-31
PRK06170 490 PRK06170, PRK06170, amidase; Provisional 7e-30
PRK07487 469 PRK07487, PRK07487, amidase; Provisional 1e-27
PRK09201 465 PRK09201, PRK09201, amidase; Provisional 5e-24
PRK06169 466 PRK06169, PRK06169, putative amidase; Provisional 3e-22
PRK12470 462 PRK12470, PRK12470, amidase; Provisional 4e-22
PRK08137 497 PRK08137, PRK08137, amidase; Provisional 1e-21
TIGR00132 460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 1e-21
PRK07488 472 PRK07488, PRK07488, indole acetimide hydrolase; Va 7e-21
PRK06565 566 PRK06565, PRK06565, amidase; Validated 1e-20
TIGR02715 452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 6e-20
PRK07042 464 PRK07042, PRK07042, amidase; Provisional 1e-17
PRK06061 483 PRK06061, PRK06061, amidase; Provisional 2e-16
PRK06828 491 PRK06828, PRK06828, amidase; Provisional 2e-14
PRK07869 468 PRK07869, PRK07869, amidase; Provisional 2e-11
PRK11910 615 PRK11910, PRK11910, amidase; Provisional 4e-10
PRK07235 502 PRK07235, PRK07235, amidase; Provisional 6e-10
PRK06529 482 PRK06529, PRK06529, amidase; Provisional 1e-09
PRK06707 536 PRK06707, PRK06707, amidase; Provisional 2e-09
PRK06102 452 PRK06102, PRK06102, hypothetical protein; Provisio 2e-08
PRK07056 454 PRK07056, PRK07056, amidase; Provisional 2e-07
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 2e-07
PRK08310 395 PRK08310, PRK08310, amidase; Provisional 2e-06
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 1e-05
PRK05962 424 PRK05962, PRK05962, amidase; Validated 2e-04
PLN02722 422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 4e-04
PRK07139 439 PRK07139, PRK07139, amidase; Provisional 4e-04
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information 
 Score =  160 bits (406), Expect = 1e-46
 Identities = 58/147 (39%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 114 ELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIA 173
           EL   +L R +  NP L A VT   E A  QAK AD+  A+ K  GPLHG+P  LKD I 
Sbjct: 1   ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRAR-KEKGPLHGVPISLKDNID 59

Query: 174 VPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFG---GRTRN 230
           V    TT GS   +      +A V +RL++AGAV++ K      A          G TRN
Sbjct: 60  VKGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPTRN 119

Query: 231 PWNIEEFSTGSSAGPAACTSAGILLFS 257
           PW++     GSS G AA  +AG++  +
Sbjct: 120 PWDLSRTPGGSSGGSAAAVAAGLVPLA 146

Length = 431
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
PRK07042 464 amidase; Provisional 100.0
PRK09201 465 amidase; Provisional 100.0
PRK07487 469 amidase; Provisional 100.0
PRK06170 490 amidase; Provisional 100.0
PRK06169 466 putative amidase; Provisional 100.0
TIGR02715 452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK07486 484 amidase; Provisional 100.0
COG0154 475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK12470 462 amidase; Provisional 100.0
PRK08137 497 amidase; Provisional 100.0
PRK06102 452 hypothetical protein; Provisional 100.0
PRK07869 468 amidase; Provisional 100.0
PRK07488 472 indole acetimide hydrolase; Validated 100.0
PRK07056 454 amidase; Provisional 100.0
PRK06061 483 amidase; Provisional 100.0
PRK06529 482 amidase; Provisional 100.0
PRK00012 459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132 460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK06828 491 amidase; Provisional 100.0
PRK11910 615 amidase; Provisional 100.0
PRK06565 566 amidase; Validated 100.0
PRK06707 536 amidase; Provisional 100.0
PF01425 441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK05962 424 amidase; Validated 100.0
PRK07235 502 amidase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
KOG1212 560 consensus Amidases [Translation, ribosomal structu 100.0
KOG1211 506 consensus Amidases [Translation, ribosomal structu 100.0
PRK07139 439 amidase; Provisional 100.0
PRK08310 395 amidase; Provisional 100.0
PLN02722 422 indole-3-acetamide amidohydrolase 100.0
>PRK07042 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.6e-48  Score=373.39  Aligned_cols=167  Identities=31%  Similarity=0.425  Sum_probs=160.5

Q ss_pred             hccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCcEEEEcCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeeccc
Q 024999           93 IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII  172 (259)
Q Consensus        93 i~~~si~~L~~~l~~g~lT~~ev~~a~l~ri~~~~~~ln~~~~~~~e~Al~~A~~~d~~~~~g~~~gpL~GIPi~vKD~i  172 (259)
                      +..+++.+|+++|++|++|++||+++|++||+++|+.+|+|+++++|+|+++|+++|+++++|+.+||||||||+|||+|
T Consensus         4 ~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~   83 (464)
T PRK07042          4 LHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENI   83 (464)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCCCCCCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHH
Q 024999          173 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACT  249 (259)
Q Consensus       173 ~v~G~~TT~Gs~~~~~~~~~~da~vV~rL~~aGAIiigKt~~~ela~~---~~~~~G~t~NP~n~~~~~GGSSgGsAaaV  249 (259)
                      +|+|++||+||..+.++++.+||++|++|+++|||++|||||+||+++   .+.+||+|+||||++|++|||||||||+|
T Consensus        84 ~v~G~~tt~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaV  163 (464)
T PRK07042         84 ATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAA  163 (464)
T ss_pred             ccCCcccCCCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHHHH
Confidence            999999999999999999999999999999999999999999999874   45678999999999999999999999999


Q ss_pred             HhCCcccccC
Q 024999          250 SAGILLFSYC  259 (259)
Q Consensus       250 AaG~~p~AiG  259 (259)
                      |+|++++|||
T Consensus       164 AaG~~~~alG  173 (464)
T PRK07042        164 AAGYGPLHLG  173 (464)
T ss_pred             HcCCCceeee
Confidence            9999999997

>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
1m21_A 503 Crystal Structure Analysis Of The Peptide Amidase P 4e-11
2df4_A 485 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-10
2dc0_A 434 Crystal Structure Of Amidase Length = 434 1e-09
3h0l_A 478 Structure Of Trna-Dependent Amidotransferase Gatcab 2e-09
3a2p_A 493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 1e-07
3a2q_A 493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 1e-07
3kfu_E 471 Crystal Structure Of The Transamidosome Length = 47 7e-07
3al0_A 475 Crystal Structure Of The Glutamine Transamidosome F 2e-06
2gi3_A 476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 7e-06
1obi_A 414 Crystal Structure Of The G130a Mutant Of Malonamida 1e-04
1ock_A 412 The Crystal Structure Of Malonamidase E2 From Brady 1e-04
1obj_A 414 Crystal Structure Of The T150a Mutant Of Malonamida 1e-04
1obk_A 414 Crystal Structure Of The R158q Mutant Of Malonamida 1e-04
1o9q_A 414 Crystal Structure Of The S155c Mutant Of Malonamida 1e-04
1obl_A 414 Crystal Structure Of The S133a Mutant Of Malonamida 1e-04
1o9o_A 414 Crystal Structure Of The S131a Mutant Of Malonamida 1e-04
1o9n_A 414 Crystal Structure Of The K62a Mutant Of Malonamidas 4e-04
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 87  PENEEDIAFMSVLELGALIRTKQITSEELTRIFLKR---LKRYNPALEAVVTYTDELAYQ 143
           P  E D+A     +L A +   ++ S  LT+ +L+R   L R  P L AV+    + A +
Sbjct: 7   PYAETDVA-----DLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALK 60
Query: 144 QAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKS 203
           +A E D     G+  GPLHGIP  LKD I      T+ GS   +      +A++ +RL+ 
Sbjct: 61  EAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQG-FRPDDAYLVRRLRD 119
Query: 204 AGAVLVAKLVSGSLA----YDDI--WF--GGRTRNPWNIEEFSTGSSAGPAACTSAGI 253
           AGAV++ K      A     D I  W   GG+TRNP+ I     GSS+G A   +A +
Sbjct: 120 AGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANL 177
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 5e-38
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 4e-37
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 5e-36
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 1e-35
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 5e-35
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 2e-34
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 5e-32
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 2e-30
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 1e-27
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 8e-23
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
 Score =  136 bits (346), Expect = 5e-38
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 96  MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 155
           M +LE   L+ T + T   L    L+R K +     A+    +E A ++A    E L +G
Sbjct: 1   MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRG 59

Query: 156 KYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSG 215
           +  GPLHG+P  +KD+  V    T  G+      +   EA   +RL+ AGA+L AK    
Sbjct: 60  QVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPL-PEEARAVRRLREAGALLFAKTNMH 118

Query: 216 SLAY----DDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
            +A     ++ W  G  RN  +    + GSS G A   + GI L S
Sbjct: 119 EIALGITGENPWT-GPVRNAVDPSRQAGGSSGGSAVAVALGIGLAS 163
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 100.0
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
Probab=100.00  E-value=3.4e-49  Score=382.41  Aligned_cols=167  Identities=30%  Similarity=0.425  Sum_probs=160.3

Q ss_pred             hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCcEEEEcCHHHHHHHHHHHHHHH-HcCCCCCCCCCCcceeec
Q 024999           92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELL-AQGKYLGPLHGIPYGLKD  170 (259)
Q Consensus        92 ~i~~~si~~L~~~l~~g~lT~~ev~~a~l~ri~~~~~~ln~~~~~~~e~Al~~A~~~d~~~-~~g~~~gpL~GIPi~vKD  170 (259)
                      ++.++++.+|+++|++|++|++||+++||+||+++|+.+|||+++++|+|+++|+++|+++ ++|+. ||||||||+|||
T Consensus         2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD   80 (485)
T 3ip4_A            2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKD   80 (485)
T ss_dssp             CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEET
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEc
Confidence            3678899999999999999999999999999999999999999999999999999999999 88988 999999999999


Q ss_pred             cccCCCCCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCCCCCCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 024999          171 IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA  247 (259)
Q Consensus       171 ~i~v~G~~TT~Gs~~~~~~~~~~da~vV~rL~~aGAIiigKt~~~ela~~---~~~~~G~t~NP~n~~~~~GGSSgGsAa  247 (259)
                      ||+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++   .+..||+|+||||+.+++|||||||||
T Consensus        81 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAa  160 (485)
T 3ip4_A           81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA  160 (485)
T ss_dssp             TBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred             CcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHH
Confidence            99999999999999999999999999999999999999999999999885   345679999999999999999999999


Q ss_pred             HHHhCCcccccC
Q 024999          248 CTSAGILLFSYC  259 (259)
Q Consensus       248 aVAaG~~p~AiG  259 (259)
                      +||+|++|+|||
T Consensus       161 aVAag~~~~alG  172 (485)
T 3ip4_A          161 AVAAGLVPLSLG  172 (485)
T ss_dssp             HHHTTSCSEEEE
T ss_pred             HhhcCCCceeee
Confidence            999999999997
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d2f2aa1 485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 2e-34
d1mt5a_ 537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 8e-34
d1m22a_ 490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 4e-30
d2gi3a1 475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 6e-25
d1ocka_ 412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 8e-25
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  126 bits (318), Expect = 2e-34
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 92  DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
            I + SV  L  LI+ K+I   ++ +     ++  +P +++ +    E A ++A+E DEL
Sbjct: 2   SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61

Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
            A+ +  G L GIP G+KD I     +TT  S   +  V   E+ V ++L    AVL+ K
Sbjct: 62  QAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGK 121

Query: 212 LVSGSLAYDDIW---FGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
           L     A        +  +T NP++ +    GSS G AA  +AG++  S
Sbjct: 122 LNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLS 170
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1m22a_ 490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d2f2aa1 485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1mt5a_ 537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1 475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_ 412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=1.8e-48  Score=367.64  Aligned_cols=166  Identities=33%  Similarity=0.459  Sum_probs=155.6

Q ss_pred             hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh---CCCCcEEEEcCHHHHHHHHHHHHHHHHcCCCCCCCCCCccee
Q 024999           92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRY---NPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGL  168 (259)
Q Consensus        92 ~i~~~si~~L~~~l~~g~lT~~ev~~a~l~ri~~~---~~~ln~~~~~~~e~Al~~A~~~d~~~~~g~~~gpL~GIPi~v  168 (259)
                      +|..+++.+|+++|++|++|++||+++|++||+++   ++.+|||+++++| |+++|+++|+++++|+++||||||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEE
Confidence            57788999999999999999999999999999876   4679999999887 9999999999999999999999999999


Q ss_pred             eccccCCCCCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCCCCCCCCC--------CCCCCcCCCCCCCCCCCCC
Q 024999          169 KDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD--------IWFGGRTRNPWNIEEFSTG  240 (259)
Q Consensus       169 KD~i~v~G~~TT~Gs~~~~~~~~~~da~vV~rL~~aGAIiigKt~~~ela~~~--------~~~~G~t~NP~n~~~~~GG  240 (259)
                      ||+|+|+|++||+||..+.++. .+||.+|++|+++|||++|||||+||+++.        +.+||+|+||||+.+++||
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~~~-~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~GG  160 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCG  160 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTTCC-CCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCS
T ss_pred             EcccccCCCccCCcchhhcccC-CccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccCCCC
Confidence            9999999999999999999875 579999999999999999999999998632        4568999999999999999


Q ss_pred             CChhHHHHHHhCCcccccC
Q 024999          241 SSAGPAACTSAGILLFSYC  259 (259)
Q Consensus       241 SSgGsAaaVAaG~~p~AiG  259 (259)
                      |||||||+||+|+++||||
T Consensus       161 SSgGsaaavA~g~~~~aiG  179 (490)
T d1m22a_         161 SSSGSAVAVAANLASVAIG  179 (490)
T ss_dssp             SSHHHHHHHHTTSSSEEEE
T ss_pred             CcchHHHHHHHhhhhcccc
Confidence            9999999999999999997
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure