Citrus Sinensis ID: 025000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEccEEEEccccccccccccccccEEEEEEcccccccEEEEEEEEccccccccccccccEEEEEEEcEEEEEEccccEEEEccccEEEEcccccEEEEEccccEEEEEEEEEEccccccccEEEEcccccccccccccEEEEEEEccccccccEEEEEEEEcccccccccccccEEEEEEEEEcEEEEEEccEEEEcccccEEEEccccHHHEEcccccEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccEEEEccEEEEcccccEEcccccccccEEEEEEcccccccHHHEEEEEcccccccccccccEEEEEEEEcEEEEEEEcccEEEEccccEEEEcccccEEEEcccccEEEEEEEEEEcccccccccEEEcccccccccccccEEEEEEcccccccccEEEEEEEEcccccccHHHHHHHHccEEEEEccEEEEcccccEEcccccEEEEcccccHHHHccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mywkvtnptlspshlqdlpgftrsvykrdhalitpeshvlsplpewtntlgaylitpamgSHFVMYLANMQEnarsalpphdvERFIFVVQGSamltnasgvssklmvdsytylppnfahslraegsATLVVFERRYASLENHiteqivgstdkqplletpgeVFQLRkllpqavpfdfnihimdfqpgdflnvkEVHYNQHGLlllegqgiyrlgdswypvqagdvlwmapfvPQWYAALGKTRTRYLLYKDVNRNPL
Flexible Loop (DISEMBL)
mywkvtnptlspshlqdlpGFTRSVYKRDHALITpeshvlsplpEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHiteqivgstdkqplLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRyllykdvnrnpl
Low Complexity Region (SEG)
MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Disordered region (IsUnstruct)
*****************LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV*****
Disordered Region (DISOPRED)
*YW****PTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLAN*************VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNP*
Disordered Region (DISEMBL)
********TLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Disordered Region (DISPRO)
MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRNPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
P75713	261	Uncharacterized protein Y	N/A	no	0.903	0.896	0.295	2e-23

>sp|P75713|YLBA_ECOLI Uncharacterized protein YlbA OS=Escherichia coli (strain K12) GN=ylbA PE=1 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)

Query: 22  TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 80
            R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N  +    
Sbjct: 17  NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76

Query: 81  HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 135
               +E F++V+ G+ +   A G +  L    Y Y PP    +    +AE S  + +++R
Sbjct: 77  GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134

Query: 136 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 194
           RY  +E +    + G+  +   +   G +   L   LP+ + FD N+HI+ F PG     
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194

Query: 195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 253
            E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254

Query: 254 VNRN 257
            NR+
Sbjct: 255 CNRD 258

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
449463234	309	PREDICTED: uncharacterized protein LOC10	1.0	0.838	0.822	1e-128
51971771	298	unknown protein [Arabidopsis thaliana]	1.0	0.869	0.826	1e-125
22328740	298	ureidoglycine aminohydrolase [Arabidopsi	1.0	0.869	0.826	1e-125
384482500	266	Chain A, Crystal Structure Of (S)-Ureido	1.0	0.973	0.826	1e-124
51969886	298	unknown protein [Arabidopsis thaliana]	1.0	0.869	0.822	1e-124
312281791	298	unnamed protein product [Thellungiella h	1.0	0.869	0.818	1e-124
297804480	298	transcription factor [Arabidopsis lyrata	1.0	0.869	0.806	1e-124
219362827	311	uncharacterized protein LOC100217019 pre	1.0	0.832	0.764	1e-118
242050300	305	hypothetical protein SORBIDRAFT_02g03397	1.0	0.849	0.760	1e-118
356510942	294	PREDICTED: uncharacterized protein LOC10	1.0	0.880	0.764	1e-118

>gi|449463234|ref|XP_004149339.1| PREDICTED: uncharacterized protein LOC101218090 [Cucumis sativus] gi|449521758|ref|XP_004167896.1| PREDICTED: uncharacterized protein LOC101230608 [Cucumis sativus]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 213/259 (82%), Positives = 240/259 (92%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +Y+KVTNPTLSPSHLQDLPGFTRSVYKRDHALITPES V SPLPEWTNTLGAYLITPA+G
Sbjct: 48  LYYKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESQVFSPLPEWTNTLGAYLITPALG 107

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E ++S LPP DVERF+FV+QG+  LTN+SG+S KL VDS+ YLPPNF H
Sbjct: 108 SHFVMYLAQMKEKSKSGLPPTDVERFLFVIQGAVKLTNSSGISEKLTVDSFAYLPPNFDH 167

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           S+ ++ SATLVVFERRYASL +H T+QIVGSTDKQPLLETPGEVFQLRKLLP ++P+DFN
Sbjct: 168 SVMSDSSATLVVFERRYASLVDHHTKQIVGSTDKQPLLETPGEVFQLRKLLPMSMPYDFN 227

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           +HIMDF+PG+FLNVKEVHYNQHGLLLLEGQGIYRLGD WYPVQ+GD +WMAPFVPQWYAA
Sbjct: 228 VHIMDFEPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDYWYPVQSGDAIWMAPFVPQWYAA 287

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKD+NRNPL
Sbjct: 288 LGKTRSRYLLYKDMNRNPL 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971771|dbj|BAD44550.1| unknown protein [Arabidopsis thaliana]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/259 (82%), Positives = 230/259 (88%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct: 40  IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 99

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN+S  S KL VDSY YLPPNF H
Sbjct: 100 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNSSSSSKKLTVDSYAYLPPNFHH 159

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           SL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct: 160 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 219

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 220 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 279

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 280 LGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328740|ref|NP_193438.2| ureidoglycine aminohydrolase [Arabidopsis thaliana] gi|26451095|dbj|BAC42652.1| unknown protein [Arabidopsis thaliana] gi|296248910|gb|ADH04164.1| ureidoglycine aminohydrolase [Arabidopsis thaliana] gi|332658443|gb|AEE83843.1| ureidoglycine aminohydrolase [Arabidopsis thaliana]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/259 (82%), Positives = 229/259 (88%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct: 40  IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 99

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPNF H
Sbjct: 100 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHH 159

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           SL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct: 160 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 219

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 220 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 279

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 280 LGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|384482500|pdb|4E2Q|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482501|pdb|4E2Q|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482502|pdb|4E2Q|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482503|pdb|4E2Q|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482504|pdb|4E2Q|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482505|pdb|4E2Q|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482506|pdb|4E2Q|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482507|pdb|4E2Q|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482508|pdb|4E2Q|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482509|pdb|4E2Q|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482510|pdb|4E2Q|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482511|pdb|4E2Q|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482512|pdb|4E2Q|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482513|pdb|4E2Q|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482514|pdb|4E2Q|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482515|pdb|4E2Q|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana gi|384482516|pdb|4E2S|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482517|pdb|4E2S|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482518|pdb|4E2S|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482519|pdb|4E2S|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482520|pdb|4E2S|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482521|pdb|4E2S|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482522|pdb|4E2S|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482523|pdb|4E2S|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482524|pdb|4E2S|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482525|pdb|4E2S|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482526|pdb|4E2S|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482527|pdb|4E2S|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482528|pdb|4E2S|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482529|pdb|4E2S|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482530|pdb|4E2S|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine gi|384482531|pdb|4E2S|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana In Complex With Its Substrate, (S)-Ureidoglycine

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/259 (82%), Positives = 229/259 (88%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct: 8   IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 67

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPNF H
Sbjct: 68  SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHH 127

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           SL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct: 128 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 187

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 188 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 247

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 248 LGKTRSRYLLYKDVNRNPL 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969886|dbj|BAD43635.1| unknown protein [Arabidopsis thaliana]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/259 (82%), Positives = 228/259 (88%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct: 40  IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 99

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPNF H
Sbjct: 100 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHH 159

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           SL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct: 160 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 219

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IH M FQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 220 IHTMGFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 279

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 280 LGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281791|dbj|BAJ33761.1| unnamed protein product [Thellungiella halophila]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/259 (81%), Positives = 230/259 (88%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +Y KVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPAMG
Sbjct: 40  IYGKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPAMG 99

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMY A M+E + S LPP D+ER +FV++G+  LTN S  S KL VDSY YLPPNF H
Sbjct: 100 SHFVMYFAKMKEMSSSGLPPQDIERLVFVIEGAVTLTNTSSSSKKLTVDSYAYLPPNFYH 159

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           SL    SATLVVFERRYA L +  TE IVGSTDKQPLLETPGEVF+LRKLLP ++ +DFN
Sbjct: 160 SLDCVESATLVVFERRYAHLGSLTTELIVGSTDKQPLLETPGEVFELRKLLPVSLAYDFN 219

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IHIMDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 220 IHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 279

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 280 LGKTRSRYLLYKDVNRNPL 298

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804480|ref|XP_002870124.1| transcription factor [Arabidopsis lyrata subsp. lyrata] gi|297315960|gb|EFH46383.1| transcription factor [Arabidopsis lyrata subsp. lyrata]

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/259 (80%), Positives = 229/259 (88%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+W NTLGAYLITPA G
Sbjct: 40  IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWKNTLGAYLITPATG 99

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E + S LPP D+ER +FVV+G+  LTN S  S +L VDSY YLPPNF H
Sbjct: 100 SHFVMYLAKMKEMSSSGLPPQDIERLVFVVEGAVTLTNTSSSSKQLTVDSYVYLPPNFHH 159

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           S+    SATLVVFERRY  L +H TE I+GSTDKQPLLETPGEVF+LRKLLP ++ +DFN
Sbjct: 160 SMDCVESATLVVFERRYEHLGSHTTELIIGSTDKQPLLETPGEVFELRKLLPMSLAYDFN 219

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IHIMDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 220 IHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 279

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 280 LGKTRSRYLLYKDVNRNPL 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219362827|ref|NP_001136866.1| uncharacterized protein LOC100217019 precursor [Zea mays] gi|194697404|gb|ACF82786.1| unknown [Zea mays]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/259 (76%), Positives = 231/259 (89%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWKVT+PTL+P+HLQDLPGFTRSV+KRDHALITPESHV SPLP+W NT+GAYLI+PA+G
Sbjct: 52  LYWKVTHPTLAPAHLQDLPGFTRSVFKRDHALITPESHVFSPLPDWINTVGAYLISPAIG 111

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           +HF+MYLANMQ+ ++SALPP DVERF+FV+QGS  LT  +G    L+VDSY YLP N  H
Sbjct: 112 AHFIMYLANMQDGSKSALPPKDVERFVFVLQGSISLTVGTGTIHSLLVDSYGYLPANTKH 171

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           S+ ++   TLV+FERRY ++E+   + IVGSTDKQPLLETPGEVFQLRKLLP ++ +DFN
Sbjct: 172 SMISDEPTTLVIFERRYNAIEDSHPDLIVGSTDKQPLLETPGEVFQLRKLLPTSLSYDFN 231

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IHIMDFQPG++LNVKEVHYNQHGLLLLEGQGIYRLG+SWYPVQAGD +WMAPFVPQWYAA
Sbjct: 232 IHIMDFQPGEYLNVKEVHYNQHGLLLLEGQGIYRLGESWYPVQAGDTIWMAPFVPQWYAA 291

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTRTRYLLYKDVNRNPL
Sbjct: 292 LGKTRTRYLLYKDVNRNPL 310

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050300|ref|XP_002462894.1| hypothetical protein SORBIDRAFT_02g033970 [Sorghum bicolor] gi|241926271|gb|EER99415.1| hypothetical protein SORBIDRAFT_02g033970 [Sorghum bicolor]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/259 (76%), Positives = 231/259 (89%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWKVT+PTL+P+HLQDLPGFTRSV+KRDHALITPESHV SPLP+W NTLGAYLI+PA+G
Sbjct: 46  LYWKVTHPTLAPTHLQDLPGFTRSVFKRDHALITPESHVFSPLPDWINTLGAYLISPAIG 105

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           +HF MYLANMQ+ ++S+LPP DVER +FV+QGS  LT  +G +  L+VDSY YLP N  H
Sbjct: 106 AHFTMYLANMQDGSKSSLPPKDVERLVFVLQGSISLTVGTGTTHSLLVDSYAYLPANTKH 165

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           S+ ++   TLV+FERRY+++E+   + IVGSTDKQPLLETPGEVFQLRKLLP ++ +DFN
Sbjct: 166 SMISDEPTTLVIFERRYSAVEDSHPDLIVGSTDKQPLLETPGEVFQLRKLLPTSLSYDFN 225

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IHIMDFQPG++LNVKEVHYNQHGLLLLEGQGIYRLG+SWYPVQAGD +WMAPFVPQWYAA
Sbjct: 226 IHIMDFQPGEYLNVKEVHYNQHGLLLLEGQGIYRLGESWYPVQAGDTIWMAPFVPQWYAA 285

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTRTRYLLYKDVNRNPL
Sbjct: 286 LGKTRTRYLLYKDVNRNPL 304

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510942|ref|XP_003524192.1| PREDICTED: uncharacterized protein LOC100800098 [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/259 (76%), Positives = 226/259 (87%)

Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWKV NPTLSP HLQDLPGFTRSVYK +HALI+PESHV  PLP+W NTLG YLI+P MG
Sbjct: 36  LYWKVDNPTLSPIHLQDLPGFTRSVYKSNHALISPESHVYGPLPDWINTLGTYLISPEMG 95

Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA ++EN++S LP   VERFIFV+QG+  LTNA+GVS  L VDSY Y PPNF H
Sbjct: 96  SHFVMYLAKLKENSKSGLPLPGVERFIFVLQGAVTLTNATGVSQLLKVDSYAYFPPNFEH 155

Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           S+  +  AT+V+ ERRY+ L NHI E +VGSTDKQPLLETPGE+F+LRKL+P ++ +DFN
Sbjct: 156 SIECDAPATIVLIERRYSPLPNHIPEPLVGSTDKQPLLETPGEIFELRKLIPTSLAYDFN 215

Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IHIMDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDV+WMAPFVPQWYAA
Sbjct: 216 IHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYAA 275

Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTRTRYL+YKD NR+PL
Sbjct: 276 LGKTRTRYLIYKDANRSPL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2130459	298	UGLYAH "AT4G17050" [Arabidopsi	1.0	0.869	0.826	3e-117
UNIPROTKB|P75713	261	allE "S-ureidoglycine aminohyd	0.891	0.885	0.302	1.2e-26
UNIPROTKB|Q5LV26	275	SPO0876 "Uncharacterized prote	0.903	0.850	0.326	7.6e-25
TIGR_CMR|SPO_0876	275	SPO_0876 "conserved hypothetic	0.903	0.850	0.326	7.6e-25
UNIPROTKB|Q4KA30	278	PFL_3803 "Uncharacterized prot	0.837	0.780	0.320	6.8e-24

TAIR|locus:2130459 UGLYAH "AT4G17050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 214/259 (82%), Positives = 229/259 (88%)

Query:     1 MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
             +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct:    40 IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 99

Query:    61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
             SHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPNF H
Sbjct:   100 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHH 159

Query:   121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
             SL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct:   160 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 219

Query:   181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
             IH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct:   220 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 279

Query:   241 LGKTRTRYLLYKDVNRNPL 259
             LGKTR+RYLLYKDVNRNPL
Sbjct:   280 LGKTRSRYLLYKDVNRNPL 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000256 "allantoin catabolic process" evidence=IDA

GO:0071522 "ureidoglycine aminohydrolase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|P75713 allE "S-ureidoglycine aminohydrolase" [Escherichia coli K-12 (taxid:83333)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 74/245 (30%), Positives = 125/245 (51%)

Query:    23 RSVYKRDH-ALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENA--RSALP 79
             R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N   +    
Sbjct:    18 RAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFG 77

Query:    80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN----FAHSLRAEGSATLVVFER 135
                +E F++V+ G+ +   A G +  L    Y Y PP     F ++ +AE S  + +++R
Sbjct:    78 GEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNA-QAEDSQ-IFLYKR 134

Query:   136 RYASLENHITEQIVGSTDKQPLLETPG--EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLN 193
             RY  +E +    + G+  +   +   G  +V  L   LP+ + FD N+HI+ F PG    
Sbjct:   135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILL-DFLPKELGFDMNMHILSFAPGASHG 193

Query:   194 VKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYK 252
               E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  K
Sbjct:   194 YIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK 253

Query:   253 DVNRN 257
             D NR+
Sbjct:   254 DCNRD 258

GO:0071522 "ureidoglycine aminohydrolase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

UNIPROTKB|Q5LV26 SPO0876 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 81/248 (32%), Positives = 118/248 (47%)

Query:    23 RSVYKRDHALI---TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSA 77
             R+++ + +A+I   T    V S LP W  T    L  P  G    F  Y+  +Q    S 
Sbjct:    23 RAMFTQAYAVIPKGTMRDIVTSKLPFWQGTRAWILARPLSGFAETFSHYIMEVQPGGGSD 82

Query:    78 LPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFE 134
              P  D   +  +FVV+G+  LT   G    L    Y Y+P      LR   G A    + 
Sbjct:    83 RPDTDPGAQAVLFVVEGAVTLT-LDGAEHVLEPGGYAYIPAGHPWRLRNHAGPAARFHWI 141

Query:   135 RR-YASLE--NHITEQIVGSTDKQP--LLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG 189
             R+ Y ++E  +  T  ++   D  P  +  T G     R + P+ +  D ++ I++F PG
Sbjct:   142 RKAYEAVEGIDPPTPFVIREQDVTPNEMPGTEGRWSTTRFVDPEDMRHDMHVTIVNFLPG 201

Query:   190 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249
               +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   A G    RYL
Sbjct:   202 GVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGPFRYL 261

Query:   250 LYKDVNRN 257
             LYKDVNR+
Sbjct:   262 LYKDVNRH 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0876 SPO_0876 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 81/248 (32%), Positives = 118/248 (47%)

Query:    23 RSVYKRDHALI---TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSA 77
             R+++ + +A+I   T    V S LP W  T    L  P  G    F  Y+  +Q    S 
Sbjct:    23 RAMFTQAYAVIPKGTMRDIVTSKLPFWQGTRAWILARPLSGFAETFSHYIMEVQPGGGSD 82

Query:    78 LPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFE 134
              P  D   +  +FVV+G+  LT   G    L    Y Y+P      LR   G A    + 
Sbjct:    83 RPDTDPGAQAVLFVVEGAVTLT-LDGAEHVLEPGGYAYIPAGHPWRLRNHAGPAARFHWI 141

Query:   135 RR-YASLE--NHITEQIVGSTDKQP--LLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG 189
             R+ Y ++E  +  T  ++   D  P  +  T G     R + P+ +  D ++ I++F PG
Sbjct:   142 RKAYEAVEGIDPPTPFVIREQDVTPNEMPGTEGRWSTTRFVDPEDMRHDMHVTIVNFLPG 201

Query:   190 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249
               +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   A G    RYL
Sbjct:   202 GVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGPFRYL 261

Query:   250 LYKDVNRN 257
             LYKDVNR+
Sbjct:   262 LYKDVNRH 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4KA30 PFL_3803 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 73/228 (32%), Positives = 106/228 (46%)

Query:    39 VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALPPHD--VERFIFVVQGSA 94
             V S LP W N     +  P  G    F  Y+  +  N  S  P  D   E  +FVV+G  
Sbjct:    42 VTSHLPHWDNMRMWVIARPLSGFAETFSQYIVEVGANGGSDKPEQDPNAEAVLFVVEGEV 101

Query:    95 MLTNASGVSSKLMVDSYTYLPPNFAHSLR-AEGS-ATLVVFERRYASLEN--HITEQIVG 150
              LT   G    L    Y ++PP     LR   G+ A      + Y  ++   +    +  
Sbjct:   102 NLT-LQGQVHVLKPGGYAFIPPAADWKLRNTSGTEARFHWIRKHYQKVDGVPYPDAFVTN 160

Query:   151 STDKQPLL--ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE 208
               D +P +  +T G     R +    +  D +++I++F+PG  +   E H  +HGL +LE
Sbjct:   161 EQDIEPRVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLE 220

Query:   209 GQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR 256
             G+ +YRL   W  V+AGD +W+  F PQ   + G  R RYLLYKDVNR
Sbjct:   221 GKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNR 268


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       259   0.00088  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  207 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.11u 0.09s 22.20t   Elapsed:  00:00:01
  Total cpu time:  22.11u 0.09s 22.20t   Elapsed:  00:00:01
  Start:  Sat May 11 11:17:39 2013   End:  Sat May 11 11:17:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
PRK11171	266	PRK11171, PRK11171, hypothetical protein; Provisio	1e-82
TIGR03214	252	TIGR03214, ura-cupin, putative allantoin catabolis	4e-60
COG3257	264	COG3257, GlxB, Uncharacterized protein, possibly i	2e-55
pfam07883	70	pfam07883, Cupin_2, Cupin domain	2e-04
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	4e-04
COG3837	161	COG3837, COG3837, Uncharacterized conserved protei	0.004

>gnl|CDD|183011 PRK11171, PRK11171, hypothetical protein; Provisional

 Score =  248 bits (635), Expect = 1e-82
 Identities = 93/252 (36%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 16  QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENAR 75
           Q     TR+V    +A+I P+  V S LP W NT    L  P +G+ F  YL  ++    
Sbjct: 14  QTDLLTTRAVVTEAYAVIPPDDIVTSVLPGWENTRAWVLARPGLGATFSQYLVEVEPGGG 73

Query: 76  S--ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLV 131
           S    P    E F+FVV+G   LT   G +  L    Y YLPP    +LR  G+  A   
Sbjct: 74  SDQPEPDEGAETFLFVVEGEITLT-LEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFH 132

Query: 132 VFERRYASLENHIT-EQIVGS---TDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQ 187
              +RY  +E H   E  VG+    +  P+  T G     R + P+ + FD +++I+ F+
Sbjct: 133 WIRKRYEPVEGHEAPEAFVGNESDIEPIPMPGTDGVWATTRLVDPEDLRFDMHVNIVTFE 192

Query: 188 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR 247
           PG  +   E H  +HGL +LEG+G+YRL + W  V+AGD +WM  + PQ   A G    R
Sbjct: 193 PGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR 252

Query: 248 YLLYKDVNRNPL 259
           YLLYKDVNR+P 
Sbjct: 253 YLLYKDVNRHPE 264

Length = 266

>gnl|CDD|200251 TIGR03214, ura-cupin, putative allantoin catabolism protein

 Score =  190 bits (484), Expect = 4e-60
 Identities = 84/247 (34%), Positives = 130/247 (52%), Gaps = 11/247 (4%)

Query: 22  TRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP 79
           TR+++  ++A+ITP+  V + +P + NT    L  P +G  + FV Y+  +     +   
Sbjct: 7   TRAIFTGNYAVITPDGLVSNIVPGFENTDIWILARPKLGFSATFVQYIVEVHPGGGATTG 66

Query: 80  PHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF--ER 135
                +E F+FV+ G   ++   G + +L    Y YLPP    +L          F  ++
Sbjct: 67  FGGEGIETFLFVIDGEVNVS-LGGETHELEEGGYAYLPPGSKWTLENAQDEDARFFLYKK 125

Query: 136 RYASLEN-HITEQIVGSTDKQPLLETPG--EVFQLRKLLPQAVPFDFNIHIMDFQPGDFL 192
           RY  +E  H  E +VG+          G  +V+    LLP+ + FD N+HI+ F+PG   
Sbjct: 126 RYQPVEGLHAPEAVVGNERDIEPEAYEGMDDVW-ATTLLPKELAFDMNVHILSFEPGASH 184

Query: 193 NVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 252
              E H  +HGL +LEG+G+Y L + W PV+AGD +WM  + PQ   A+G+   RYLLYK
Sbjct: 185 PYIETHVMEHGLYVLEGKGVYNLDNDWVPVEAGDYIWMGAYCPQACYAVGRGPFRYLLYK 244

Query: 253 DVNRNPL 259
           DVNR+P 
Sbjct: 245 DVNRHPK 251

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis). Length = 252

>gnl|CDD|225796 COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

 Score =  178 bits (454), Expect = 2e-55
 Identities = 87/253 (34%), Positives = 124/253 (49%), Gaps = 10/253 (3%)

Query: 15  LQDLPGFTRSVYKRDHALITPESH-VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQ 71
            Q      R+++K  +A+I      V S LP W NT    L  P  G  + FV Y+  + 
Sbjct: 10  YQTDLLANRAIFKEAYAVIPKGVMIVTSILPFWENTRAWILSRPLSGFAATFVQYIVELH 69

Query: 72  ENARSALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT 129
            N  S  P  D   E F+FVV G   +  A G +  L    Y YLPP    +LR      
Sbjct: 70  PNGGSQRPEGDEGAETFLFVVSGEITVK-AEGKTHALREGGYAYLPPGSGWTLRNAQKED 128

Query: 130 --LVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMD 185
                  +RY  +E     E + G+  +       G +      +LP+ + FD ++HI+ 
Sbjct: 129 SRFHWIRKRYQPVEGVQAPELVSGNESEIEPSPMEGTDGVIATTVLPKELRFDMHVHIVS 188

Query: 186 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 245
           F+PG  +   E H  +HGL +LEG+G+YRL ++W PV+AGD +WM  + PQ   A G+  
Sbjct: 189 FEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCPQACYAGGRGA 248

Query: 246 TRYLLYKDVNRNP 258
            RYLLYKDVNR+ 
Sbjct: 249 FRYLLYKDVNRHV 261

Length = 264

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 182 HIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 241
            ++   PG+       H  +    +LEG+G   +      ++AGD ++    VP  +   
Sbjct: 1   GLVTLPPGESSPP-HRHPGEEFFYVLEGEGELTVDGEEVVLKAGDSVYFPAGVPHRFRNT 59

Query: 242 GKTRTRYL 249
           G    R L
Sbjct: 60  GDEPARLL 67

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 162 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWY 220
           G      ++LP+    + ++ ++ F+PG  +     H   +  + +LEG+G  +L     
Sbjct: 26  GVAVVKSRVLPRNEGENLSVVLVTFEPGAVIP-WHTHPLGEQTIYVLEGEGTVQLEGEKK 84

Query: 221 PVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250
            ++AGDV+ + P V     A+       LL
Sbjct: 85  ELKAGDVIIIPPGVVHGLKAVEDEPMVLLL 114

Length = 131

>gnl|CDD|226357 COG3837, COG3837, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 178 DFNIHIMDFQPGDFLNVKEVHYNQHG---LLLLEGQGIYRLGDSWYPVQAGDVL 228
            F +++   +PG   +++  H++      + +LEG+G  R       ++ GD  
Sbjct: 41  RFGVNLEIVEPGGESSLR--HWHSAEDEFVYILEGEGTLREDGGETRLRPGDSA 92

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	100.0
COG3257	264	GlxB Uncharacterized protein, possibly involved in	100.0
PRK11171	266	hypothetical protein; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.93
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.71
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.63
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.6
COG1917	131	Uncharacterized conserved protein, contains double	99.56
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.54
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.51
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.5
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.49
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.43
PRK11171	266	hypothetical protein; Provisional	99.42
COG1917	131	Uncharacterized conserved protein, contains double	99.36
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.36
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.35
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.34
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.34
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.33
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.31
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	99.29
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.28
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.27
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.26
COG3837	161	Uncharacterized conserved protein, contains double	99.2
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	99.19
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.13
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	99.12
COG3837	161	Uncharacterized conserved protein, contains double	99.11
PLN00212	493	glutelin; Provisional	99.07
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.07
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	99.04
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	99.0
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.99
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.9
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.88
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	98.88
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.85
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.81
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.76
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.76
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.74
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.73
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.73
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.7
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.66
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.65
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.63
PLN00212	493	glutelin; Provisional	98.62
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.5
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	98.48
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.46
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	98.43
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	98.41
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.36
PRK13501	290	transcriptional activator RhaR; Provisional	98.36
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.32
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	98.29
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.27
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	98.27
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.23
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.22
COG3257	264	GlxB Uncharacterized protein, possibly involved in	98.16
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.15
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.11
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	98.11
PRK13500	312	transcriptional activator RhaR; Provisional	98.11
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	98.09
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.07
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.02
PRK13503	278	transcriptional activator RhaS; Provisional	97.99
PRK13502	282	transcriptional activator RhaR; Provisional	97.94
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.88
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.88
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.85
PRK13501	290	transcriptional activator RhaR; Provisional	97.85
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.82
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	97.78
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	97.78
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.78
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.77
COG3450	116	Predicted enzyme of the cupin superfamily [General	97.77
PRK15131	389	mannose-6-phosphate isomerase; Provisional	97.74
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	97.72
PRK13500	312	transcriptional activator RhaR; Provisional	97.69
PRK13502	282	transcriptional activator RhaR; Provisional	97.63
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.63
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.58
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.55
PRK13503	278	transcriptional activator RhaS; Provisional	97.46
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.45
PLN02288	394	mannose-6-phosphate isomerase	97.41
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.36
COG1791	181	Uncharacterized conserved protein, contains double	97.33
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	97.23
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.2
COG4297	163	Uncharacterized protein containing double-stranded	97.2
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.16
COG1741	276	Pirin-related protein [General function prediction	97.13
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	97.1
COG1791	181	Uncharacterized conserved protein, contains double	97.0
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	96.92
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.81
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	96.66
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	96.65
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.52
COG4297	163	Uncharacterized protein containing double-stranded	96.38
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.34
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	96.33
PF12852	186	Cupin_6: Cupin	96.31
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	96.3
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	96.21
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.15
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	95.99
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	95.54
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	95.51
PF12852	186	Cupin_6: Cupin	95.49
COG3450	116	Predicted enzyme of the cupin superfamily [General	95.45
PLN02288	394	mannose-6-phosphate isomerase	95.4
PRK10579	94	hypothetical protein; Provisional	95.38
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	95.36
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	95.35
KOG2107	179	consensus Uncharacterized conserved protein, conta	95.27
COG3717	278	KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate	95.23
PLN02658	435	homogentisate 1,2-dioxygenase	95.19
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	95.16
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	95.11
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	94.99
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	94.87
PF14525	172	AraC_binding_2: AraC-binding-like domain	94.77
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	94.75
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	94.7
PRK15131	389	mannose-6-phosphate isomerase; Provisional	94.69
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	93.9
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	93.34
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	93.05
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	92.72
PF14525	172	AraC_binding_2: AraC-binding-like domain	92.05
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	92.02
COG1741	276	Pirin-related protein [General function prediction	91.86
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	91.57
PRK11396	191	hypothetical protein; Provisional	91.37
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	91.28
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	91.26
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	91.23
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	90.74
COG5553	191	Predicted metal-dependent enzyme of the double-str	90.72
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	90.29
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	90.04
PRK10579	94	hypothetical protein; Provisional	89.96
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	89.45
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	89.27
COG3123	94	Uncharacterized protein conserved in bacteria [Fun	89.26
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	86.86
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	86.74
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	86.67
COG5553	191	Predicted metal-dependent enzyme of the double-str	86.18
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	86.06
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	85.98
COG2850	383	Uncharacterized conserved protein [Function unknow	85.6
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	84.83
PRK15186	291	AraC family transcriptional regulator; Provisional	83.45
PF06719	155	AraC_N: AraC-type transcriptional regulator N-term	83.44
COG3806	216	ChrR Transcriptional activator [Transcription]	83.3
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	82.46
PHA00672	152	hypothetical protein	81.82
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	81.49
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	80.87
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	80.68
PF01238	373	PMI_typeI: Phosphomannose isomerase type I; InterP	80.26

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=100.00  E-value=2.3e-69  Score=483.13  Aligned_cols=243  Identities=35%  Similarity=0.626  Sum_probs=228.8

Q ss_pred             ccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCC--CcEEEEEEEecCCCcCCCC-C-CCceEEEEEEE
Q 025000           16 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP-P-HDVERFIFVVQ   91 (259)
Q Consensus        16 ~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h-~-~~~Eef~yVl~   91 (259)
                      +..+..|||+++++||+|+|++.+.+.+|+|++++.++|++|..|  +.|++++++++||+....+ . .+.|||+||++
T Consensus         9 ~~~~~~~r~~~~~~~a~i~p~~~~~~~vp~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~   88 (260)
T TIGR03214         9 QKQLLTTRAVVHGNYAVITPDGLVSNIVPGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVIS   88 (260)
T ss_pred             hhhcccceEEEEcceEEECCcceecccCCCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEe
Confidence            566788999999999999999999999999999999999999998  8999999999999876443 3 45599999999


Q ss_pred             CEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCC-CCcceeeccCCCCCCcccCC-ceEEE
Q 025000           92 GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLEN-HITEQIVGSTDKQPLLETPG-EVFQL  167 (259)
Q Consensus        92 G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g-~~p~~~v~~~~di~~~~~~g-~~~~~  167 (259)
                      |++++++ +|+++.|++||++|||++.+|+++|  +++|+++|+.|+|+|++| .+|.+++++++|++..+++| +++.+
T Consensus        89 G~l~v~~-~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~  167 (260)
T TIGR03214        89 GEVNVTA-EGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVIL  167 (260)
T ss_pred             CEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEE
Confidence            9999999 9999999999999999999999999  669999999999999999 78999999999999999977 77788


Q ss_pred             EEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          168 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       168 ~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                      +.|+|++.+++++|++++|+||+++|+||||+|||++|||+|+|+|++||+|++|++||+|||+|||+|+++|+|+++++
T Consensus       168 ~~llp~~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~  247 (260)
T TIGR03214       168 TTLLPKELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFR  247 (260)
T ss_pred             EEeCchhcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence            87668788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCC
Q 025000          248 YLLYKDVNRNPL  259 (259)
Q Consensus       248 fi~~k~~nr~~~  259 (259)
                      ||+||||||||.
T Consensus       248 ~l~ykd~nr~~~  259 (260)
T TIGR03214       248 YLLYKDMNRHVK  259 (260)
T ss_pred             EEEEccccCCCC
Confidence            999999999974

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=100.00  E-value=7.8e-64  Score=424.38  Aligned_cols=242  Identities=35%  Similarity=0.623  Sum_probs=230.2

Q ss_pred             ccCCCCceeeeeeceEEECCCCc-eeccCCCCCcceEEEEecCCCC--CcEEEEEEEecCCCcCCCC--CCCceEEEEEE
Q 025000           16 QDLPGFTRSVYKRDHALITPESH-VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP--PHDVERFIFVV   90 (259)
Q Consensus        16 ~~~~~~tR~~~~~~~avi~pe~~-v~~~lp~~~~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h--~~~~Eef~yVl   90 (259)
                      ++.+..+||.++..||+|++... |.+.||.|++++.|++++|..|  +.|+++++++.|++++...  ..+.|.|+||+
T Consensus        11 q~~Ll~~RA~f~~ayavIpk~~~iVts~Lp~w~~tr~wilsrP~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv   90 (264)
T COG3257          11 QTDLLANRAIFKEAYAVIPKGVMIVTSILPFWENTRAWILSRPLSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFVV   90 (264)
T ss_pred             hhhhhhchhhhccccEEecCCcEEEEeecCCCCCceEEEEeccccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEEE
Confidence            78889999999999999999875 8999999999999999999987  8999999999999977544  36889999999


Q ss_pred             ECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceEE
Q 025000           91 QGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQ  166 (259)
Q Consensus        91 ~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~~  166 (259)
                      +|++++.+ +|+++.|++|+++|+|||..|+++|  .+++|+.|++|+|++.+|. +|+.+++|++|++..+++| +++.
T Consensus        91 ~Ge~tv~~-~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~Y~~VdG~~~P~~~~~Ne~ei~~~~m~gtdg~~  169 (264)
T COG3257          91 SGEITVKA-EGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKRYQPVEGVQAPELVSGNESEIEPSPMEGTDGVI  169 (264)
T ss_pred             eeeEEEEE-cCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeecceeecCccCCcceecChhhCCCCCCCCCCCeE
Confidence            99999999 9999999999999999999999999  5689999999999999997 8999999999999999988 6666


Q ss_pred             EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccE
Q 025000          167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT  246 (259)
Q Consensus       167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~  246 (259)
                      ...++|+|+++||+|++++|+||++||+.|+|+|||++|||||+|+|+||..|+||++||+|||.++|||++.+.|...+
T Consensus       170 attv~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv~V~aGD~mwm~A~cpQacyagG~g~f  249 (264)
T COG3257         170 ATTVLPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCPQACYAGGRGAF  249 (264)
T ss_pred             EEeeCccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceEEeecccEEEeeccChhhhccCCCCce
Confidence            66689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCC
Q 025000          247 RYLLYKDVNRNP  258 (259)
Q Consensus       247 ~fi~~k~~nr~~  258 (259)
                      +||+|||||||+
T Consensus       250 rYLlyKDvNRh~  261 (264)
T COG3257         250 RYLLYKDVNRHV  261 (264)
T ss_pred             EEEEEecccccc
Confidence            999999999997

>PRK11171 hypothetical protein; Provisional

Probab=100.00  E-value=7.7e-61  Score=429.54  Aligned_cols=243  Identities=37%  Similarity=0.654  Sum_probs=226.8

Q ss_pred             ccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCC--CCCceEEEEEEECE
Q 025000           16 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIFVVQGS   93 (259)
Q Consensus        16 ~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h--~~~~Eef~yVl~G~   93 (259)
                      ++.+++|||+++++|++++|+++|.+.||+|.++..++|++|..++.|++++++++||++...+  +++.||++||++|+
T Consensus        14 ~~~~~~~r~~~~~~~a~~~p~~~v~~~lp~~~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~   93 (266)
T PRK11171         14 QTDLLTTRAVVTEAYAVIPPDDIVTSVLPGWENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGE   93 (266)
T ss_pred             cccccccceEEecCeEEECCcCEEeecCCCCCCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCE
Confidence            4788999999999999999999999999999999999999998889999999999999876544  34679999999999


Q ss_pred             EEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceEEEEE
Q 025000           94 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRK  169 (259)
Q Consensus        94 l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~~~~~  169 (259)
                      +++++ +|+++.|++||+++||++.+|+|+|  +++++++|+.++|+|+++. +|.+++++++|++.++++| .+..+++
T Consensus        94 l~v~~-~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y~~~~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~  172 (266)
T PRK11171         94 ITLTL-EGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRYEPVEGHEAPEAFVGNESDIEPIPMPGTDGVWATT  172 (266)
T ss_pred             EEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcCCeEcCCCCCCCeEecchhcccccccCCCCCeEEEE
Confidence            99999 9999999999999999999999999  6799999999999999987 8999999999999999976 4445554


Q ss_pred             -ee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          170 -LL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       170 -l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                       ++ |++.++++.|++++|+||++++++++|.+||.+|||+|+|.+++||+|++|++||+||++++++|+|+|+|+++++
T Consensus       173 ~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~  252 (266)
T PRK11171        173 RLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR  252 (266)
T ss_pred             EeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence             44 6777888999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCC
Q 025000          248 YLLYKDVNRNPL  259 (259)
Q Consensus       248 fi~~k~~nr~~~  259 (259)
                      ||+||||||||+
T Consensus       253 yl~~k~~nr~~~  264 (266)
T PRK11171        253 YLLYKDVNRHPE  264 (266)
T ss_pred             EEEEcccccCcc
Confidence            999999999985

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.93  E-value=2e-24  Score=201.75  Aligned_cols=189  Identities=16%  Similarity=0.224  Sum_probs=143.4

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc--CCcEE--EEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGVSS--KLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  136 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~--~ge~~--~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~  136 (259)
                      .+++.++++.||+..+.|.|...|++||++|++++++.  +|+.+  .|++||+++||+|..|.++| .+.++++++...
T Consensus        66 ~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~  145 (367)
T TIGR03404        66 AIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDD  145 (367)
T ss_pred             cccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence            68999999999998888877888999999999999992  25676  49999999999999999999 556787773222


Q ss_pred             c----------------cccC-------------------------C----------------CCcceeeccCCCCCCcc
Q 025000          137 Y----------------ASLE-------------------------N----------------HITEQIVGSTDKQPLLE  159 (259)
Q Consensus       137 y----------------~p~~-------------------------g----------------~~p~~~v~~~~di~~~~  159 (259)
                      -                .|.+                         |                ..|..+..+..++++..
T Consensus       146 ~~f~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  225 (367)
T TIGR03404       146 GNFSEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQ  225 (367)
T ss_pred             cccCCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCcee
Confidence            1                0000                         0                01111222233333333


Q ss_pred             cCCceEEEEEeeCCCC--CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-----CCEEEEccCCcEEEeCC
Q 025000          160 TPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-----GDSWYPVQAGDVLWMAP  232 (259)
Q Consensus       160 ~~g~~~~~~~l~p~~~--~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-----~g~~~~v~~GD~i~~~~  232 (259)
                      ..||.  ++.+.+.+.  ...+.+..++|+||+..+.|-|...+|.+|||+|++++++     ++++.++++||++|+|+
T Consensus       226 ~~gG~--~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~  303 (367)
T TIGR03404       226 VPGGT--VRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR  303 (367)
T ss_pred             cCCce--EEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC
Confidence            34444  355555433  3568899999999999998544446688999999999998     46899999999999999


Q ss_pred             CCceeEEeCCCccEEEEEEe
Q 025000          233 FVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       233 ~~~H~~~n~G~e~~~fi~~k  252 (259)
                      |..|+++|+|+++++||+.=
T Consensus       304 g~~H~i~N~G~e~l~fL~if  323 (367)
T TIGR03404       304 NMGHYVENTGDETLVFLEVF  323 (367)
T ss_pred             CCeEEEEECCCCCEEEEEEE
Confidence            99999999999999999963

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.71  E-value=1.3e-16  Score=128.07  Aligned_cols=101  Identities=19%  Similarity=0.216  Sum_probs=85.0

Q ss_pred             eeeccCCCCCCccc--C-CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEE-e-CCEEEE
Q 025000          147 QIVGSTDKQPLLET--P-GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-L-GDSWYP  221 (259)
Q Consensus       147 ~~v~~~~di~~~~~--~-g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~-~-~g~~~~  221 (259)
                      ++|.+.+|++.+++  + ++++.+|++.+.+ +..+.+++++|+||++++.|.||. +|.+|||+|++.+. + ||++++
T Consensus         1 ~~v~~~~~~~~~~~~~~~~~~~~krll~~~~-~~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~   78 (125)
T PRK13290          1 MIVRTLDEIEGTERDVKAGNWTSRRLLLKDD-GMGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHP   78 (125)
T ss_pred             CeEEEHHHccCcceeeecCCceEEEEEEecC-CCCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEE
Confidence            46778889998887  2 3556666777633 467788899999999999855544 58999999999999 7 599999


Q ss_pred             ccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          222 VQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       222 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +++||+++++++.+|+++|+  +++++|+-
T Consensus        79 L~aGD~i~~~~~~~H~~~N~--e~~~~l~v  106 (125)
T PRK13290         79 IRPGTMYALDKHDRHYLRAG--EDMRLVCV  106 (125)
T ss_pred             eCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence            99999999999999999998  89999885

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.63  E-value=5.9e-15  Score=118.43  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEE-EcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000           52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT-NAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSAT  129 (259)
Q Consensus        52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~-v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~  129 (259)
                      +.++.+..+..|.+++++++||+..+.|.|..+|++|||+|+++++ + + |+++.|++||++|||++.+|+++|.++++
T Consensus        24 krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~  102 (125)
T PRK13290         24 RRLLLKDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGEVHPIRPGTMYALDKHDRHYLRAGEDMR  102 (125)
T ss_pred             EEEEEecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCEEEEeCCCeEEEECCCCcEEEEcCCCEE
Confidence            4455566778999999999999988777544468999999999999 8 6 99999999999999999999999988999


Q ss_pred             EEEEEEe
Q 025000          130 LVVFERR  136 (259)
Q Consensus       130 ~l~v~~~  136 (259)
                      ++|+..+
T Consensus       103 ~l~v~tP  109 (125)
T PRK13290        103 LVCVFNP  109 (125)
T ss_pred             EEEEECC
Confidence            9998653

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.60  E-value=5.3e-15  Score=105.64  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=62.8

Q ss_pred             EEEecCCcccCcceeeccc-eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          183 IMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       183 ~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      +++|+||+.++. |+|..+ |.+|||+|++.+.++|+++.+++||+++++++++|++.|.|+++++||.
T Consensus         2 ~~~~~pG~~~~~-h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~   69 (71)
T PF07883_consen    2 LVTLPPGGSIPP-HRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV   69 (71)
T ss_dssp             EEEEETTEEEEE-EEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred             EEEECCCCCCCC-EECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence            578999999997 557766 9999999999999999999999999999999999999999999999986

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.56  E-value=3.1e-14  Score=114.47  Aligned_cols=87  Identities=23%  Similarity=0.398  Sum_probs=76.6

Q ss_pred             EEE-EeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          166 QLR-KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       166 ~~~-~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      .++ .+++.+.+..+.+..++|+||+.++. |+|+ .++.+|||+|++.++++|+.+.+++||+|++++|..||+.|.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~v~~~~G~~~~~-H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~  107 (131)
T COG1917          29 VVKSRVLPRNEGENLSVVLVTFEPGAVIPW-HTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAVED  107 (131)
T ss_pred             EEEeeeccCCCCceEEEEEEEECCCccccc-ccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccCCC
Confidence            444 45577778889999999999999997 7776 77999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEee
Q 025000          244 TRTRYLLYKD  253 (259)
Q Consensus       244 e~~~fi~~k~  253 (259)
                      +++.+|+...
T Consensus       108 ~~~~~l~v~~  117 (131)
T COG1917         108 EPMVLLLVFP  117 (131)
T ss_pred             CceeEEEEee
Confidence            9877776543

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.54  E-value=9.7e-14  Score=118.08  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             ceEEEEecCCCCCcEEEEEEEecCCCcCC-CCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--C
Q 025000           49 TLGAYLITPAMGSHFVMYLANMQENARSA-LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--E  125 (259)
Q Consensus        49 ~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~-~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~  125 (259)
                      ..+..+..+..+..+++++.+++||+... .++|.++|++||++|++++++ +|+++.|++||+++||++++|+|+|  +
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~~~H~~~n~~~  171 (185)
T PRK09943         93 VSMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI-NGQDYHLVAGQSYAINTGIPHSFSNTSA  171 (185)
T ss_pred             ceEEEeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE-CCEEEEecCCCEEEEcCCCCeeeeCCCC
Confidence            34444444444567888999999998754 446888999999999999999 9999999999999999999999999  6


Q ss_pred             CeEEEEEEEE
Q 025000          126 GSATLVVFER  135 (259)
Q Consensus       126 ~~a~~l~v~~  135 (259)
                      ++++++|+..
T Consensus       172 ~~~~~l~~~~  181 (185)
T PRK09943        172 GICRIISAHT  181 (185)
T ss_pred             CCeEEEEEeC
Confidence            6899999854

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.51  E-value=5.9e-14  Score=100.21  Aligned_cols=66  Identities=26%  Similarity=0.464  Sum_probs=60.1

Q ss_pred             EEEecCCCcCCCCCCCce-EEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000           67 LANMQENARSALPPHDVE-RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  133 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~E-ef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v  133 (259)
                      +++++||+..+.|.|..+ |++||++|++++.+ +|+++.|++||++++|++.+|+++|  ++++++++|
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            678999997788866666 99999999999999 9999999999999999999999999  668888876

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.8e-13  Score=110.02  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=70.8

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      +..+.+..++++||..++.++||.-.|.+|||+|+|.+.++|+..+|++||.+++|+|.+|.+.|+|++||++|.-..
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~  110 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS  110 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence            356778899999999987766666779999999999999999999999999999999999999999999999998643

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.49  E-value=1.9e-12  Score=119.39  Aligned_cols=201  Identities=15%  Similarity=0.221  Sum_probs=138.4

Q ss_pred             ceEEEEecCCC-C-----CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEE-EEEcCCcEEEEeCCcEEEeCCCCcEE
Q 025000           49 TLGAYLITPAM-G-----SHFVMYLANMQENARSALPPHDVERFIFVVQGSAM-LTNASGVSSKLMVDSYTYLPPNFAHS  121 (259)
Q Consensus        49 ~~~~~l~sp~~-g-----~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~-v~v~~ge~~~L~~Gd~i~~p~~~~H~  121 (259)
                      .++-+|..|.. |     ..+...+..|.||.....|.|...-+.||++|+.. ..| +|+.+.+++||.+..|+...|.
T Consensus        61 Rrvl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V-~g~~~~~~~gD~~~tP~w~wH~  139 (335)
T TIGR02272        61 RRVLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAV-DGERTTMHPGDFIITPSWTWHD  139 (335)
T ss_pred             eEEEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEE-CCEEEeeeCCCEEEeCCCeeEe
Confidence            45666777864 3     23555678899999999999999999999999995 667 9999999999999999999999


Q ss_pred             EEeCCeEEEEEEE-----------Eec-cccC----------C---------CCcceeeccCCC-----CCCccc-----
Q 025000          122 LRAEGSATLVVFE-----------RRY-ASLE----------N---------HITEQIVGSTDK-----QPLLET-----  160 (259)
Q Consensus       122 ~~N~~~a~~l~v~-----------~~y-~p~~----------g---------~~p~~~v~~~~d-----i~~~~~-----  160 (259)
                      ..|++...++|+.           .-| +..+          |         ..|........+     .|+..+     
T Consensus       140 H~n~~d~~~~wld~lD~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~g~~l~P~~~~~~~~~sP~~~ypw~~~~~aL~  219 (335)
T TIGR02272       140 HGNPGDEPMIWLDGLDIPLVQLFDCSFAEGYPEDQQPVTRPEGDSLARYGHNMLPVRHKRSDRSSPIFNYPYERSREALD  219 (335)
T ss_pred             cccCCCCcEEEEecCCHHHHHhhCcceeccccccccccccCCcchhhhcccCccccccccCCCCCCceecCcHHHHHHHH
Confidence            9996655566621           011 1000          0         011110000001     222221     


Q ss_pred             ------C--C-ceEEEEEeeCCCCCc---ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEE
Q 025000          161 ------P--G-EVFQLRKLLPQAVPF---DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVL  228 (259)
Q Consensus       161 ------~--g-~~~~~~~l~p~~~~~---~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i  228 (259)
                            +  + .++.++-.-|...+.   .+.+....|.||..... +.|....+|+|++|+|...+||+..+.++||++
T Consensus       220 ~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~-~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f  298 (335)
T TIGR02272       220 DLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTAT-YRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVF  298 (335)
T ss_pred             HHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCC-ccccccEEEEEEeCeEEEEECCEEEEecCCCEE
Confidence                  1  1 233343334654432   24444556677777764 788888999999999999999999999999999


Q ss_pred             EeCCCCceeEEeCCCccEEEEEEee
Q 025000          229 WMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       229 ~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      .+|+.+.|...|.  +++..+.+-|
T Consensus       299 ~vPsW~~~~h~a~--~da~Lf~~~D  321 (335)
T TIGR02272       299 VVPSWHPVRFEAS--DDAVLFSFSD  321 (335)
T ss_pred             EECCCCcEecccC--CCeEEEEecC
Confidence            9999999988885  5666666654

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.43  E-value=2.6e-12  Score=115.24  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=79.7

Q ss_pred             CC-ceEEEEEeeCCCCC--cceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCce
Q 025000          161 PG-EVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       161 ~g-~~~~~~~l~p~~~~--~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H  236 (259)
                      +| .+++.+.|.+...+  ..+.+.+++++||+....+++| .+||.+|||+|+..++++|+++.+++||++|++++++|
T Consensus        37 p~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H  116 (260)
T TIGR03214        37 PGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKW  116 (260)
T ss_pred             CCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCE
Confidence            44 56677888854444  6788999999999876554444 56899999999999999999999999999999999999


Q ss_pred             eEEeCCCccEEEEEEee
Q 025000          237 WYAALGKTRTRYLLYKD  253 (259)
Q Consensus       237 ~~~n~G~e~~~fi~~k~  253 (259)
                      .+.|.|+++++|+++|-
T Consensus       117 ~~~N~~~~~a~~l~v~k  133 (260)
T TIGR03214       117 TLANAQAEDARFFLYKK  133 (260)
T ss_pred             EEEECCCCCEEEEEEEe
Confidence            99999999999999874

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.42  E-value=3.1e-12  Score=115.04  Aligned_cols=91  Identities=15%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +++..+.|.+.+....+.+.+++++||+....+.|| ..||.+|||+|+..+.++|+++.+++||.++++++.+|.|.|.
T Consensus        45 ~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~~~N~  124 (266)
T PRK11171         45 ENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWTLRNA  124 (266)
T ss_pred             CCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEEC
Confidence            556677788766667788889999999987765555 5688999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEee
Q 025000          242 GKTRTRYLLYKD  253 (259)
Q Consensus       242 G~e~~~fi~~k~  253 (259)
                      |++++++|+.+-
T Consensus       125 g~~~a~~l~v~~  136 (266)
T PRK11171        125 GAEDARFHWIRK  136 (266)
T ss_pred             CCCCEEEEEEEc
Confidence            999999998863

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.36  E-value=7.6e-12  Score=100.48  Aligned_cols=66  Identities=23%  Similarity=0.405  Sum_probs=62.3

Q ss_pred             CCCCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           58 AMGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        58 ~~g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      ..+..+.+.+++++||+..+.|.|. +++.+|||+|++++++ +|+.+.|++||++++|+|+.|.+.|
T Consensus        38 ~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~-~g~~~~l~~Gd~i~ip~g~~H~~~a  104 (131)
T COG1917          38 NEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL-EGEKKELKAGDVIIIPPGVVHGLKA  104 (131)
T ss_pred             CCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe-cCCceEecCCCEEEECCCCeeeecc
Confidence            3467899999999999999999886 8999999999999999 8999999999999999999999998

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.36  E-value=8.4e-12  Score=106.16  Aligned_cols=86  Identities=14%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      ..+.|.+.+....+-+-+.+++||+..+.+++|..+|.+|||+|+..+.+||+.+.+++||.++++++.+|.+.|.|+++
T Consensus        94 ~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~  173 (185)
T PRK09943         94 SMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGI  173 (185)
T ss_pred             eEEEeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCC
Confidence            44445454444444455678999998776678888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEE
Q 025000          246 TRYLLY  251 (259)
Q Consensus       246 ~~fi~~  251 (259)
                      +++|+.
T Consensus       174 ~~~l~~  179 (185)
T PRK09943        174 CRIISA  179 (185)
T ss_pred             eEEEEE
Confidence            999986

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.1e-11  Score=99.50  Aligned_cols=73  Identities=19%  Similarity=0.397  Sum_probs=62.6

Q ss_pred             CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      +..+....+.+.||+....| ++..+|++||++|++.+++ +|++..|++||++++|+|++|+++|.+...+.++
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~-~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li  106 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI-GGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI  106 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence            56888899999999987554 4448999999999999999 9999999999999999999999999654444443

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.34  E-value=4.9e-12  Score=122.16  Aligned_cols=76  Identities=13%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +..+.+..++++||++++.|.||..+|.+|||+|++.+++||+.+.+++||.++++++.+|++.|.|++++++|+.
T Consensus       373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v  448 (468)
T TIGR01479       373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEV  448 (468)
T ss_pred             CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            4568889999999999887656555567799999999999999999999999999999999999999999999875

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.34  E-value=5.9e-12  Score=121.59  Aligned_cols=76  Identities=11%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +..+.+.+++++||++++.+.||.-+|.+|||+|++.+.++|+++.+++||.++++++.+|+++|+|++|+++|+-
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V  457 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEV  457 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            4567888999999998876656655688899999999999999999999999999999999999999999999974

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.33  E-value=9.2e-12  Score=120.25  Aligned_cols=76  Identities=18%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEe
Q 025000           60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  136 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~  136 (259)
                      +.+|.+.+++++||++.+.| +|..+|++||++|++++++ +|+++.|++||+++||++.+|+|+|  +++++++++...
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i-dg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g  460 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI-DGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG  460 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence            67899999999999977555 4566799999999999999 9999999999999999999999999  679999999533

>smart00835 Cupin_1 Cupin

Probab=99.31  E-value=2.5e-11  Score=99.46  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             cceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCE------EEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDS------WYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~------~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      ..+.+..++++||+..+. |.|. .++.+|||+|++.+.++++      .+.+++||+++++++..|++.|.|+++++|+
T Consensus        28 ~~~~~~~~~i~pg~~~~~-h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l  106 (146)
T smart00835       28 LGISAARVNLEPGGMLPP-HYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV  106 (146)
T ss_pred             CceEEEEEEecCCcCcCC-eeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence            368889999999999996 5554 6789999999999999876      9999999999999999999999999999999


Q ss_pred             EEeec
Q 025000          250 LYKDV  254 (259)
Q Consensus       250 ~~k~~  254 (259)
                      ++..-
T Consensus       107 ~~~~~  111 (146)
T smart00835      107 AFNTN  111 (146)
T ss_pred             EEecC
Confidence            98553

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=99.29  E-value=8.2e-11  Score=104.45  Aligned_cols=195  Identities=14%  Similarity=0.120  Sum_probs=107.5

Q ss_pred             ceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE---EEEeCCcEEEeCCCCcEEEEeC
Q 025000           49 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS---SKLMVDSYTYLPPNFAHSLRAE  125 (259)
Q Consensus        49 ~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~---~~L~~Gd~i~~p~~~~H~~~N~  125 (259)
                      ....+|-.-........+++.+++|-+.++|.|...+-+|||+|++.  . |+..   .-|.+|++.+.|+|..|.-...
T Consensus        22 ~~~~~L~gd~~~~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~--~-~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~   98 (251)
T PF14499_consen   22 PGAAVLWGDPTKDGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELH--N-GDPKAAAMWLPAGSYWFQPAGEPHITAAE   98 (251)
T ss_dssp             -EEEEEEEE--TTS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEE--E-TTEE-----E-TTEEEEE-TT-EEEETTS
T ss_pred             cceeeeecCcccCCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEE--c-CCCcccceecCCCceEeccCCCceeeecc
Confidence            34455555443445666788999998889998889999999999755  5 5543   4599999999999988866554


Q ss_pred             CeEEEEEE---EEecc--cc-----CCCCcce------eeccCCCCCCcccC-C--ceEEEEEeeCC-CCC-cceEEEEE
Q 025000          126 GSATLVVF---ERRYA--SL-----ENHITEQ------IVGSTDKQPLLETP-G--EVFQLRKLLPQ-AVP-FDFNIHIM  184 (259)
Q Consensus       126 ~~a~~l~v---~~~y~--p~-----~g~~p~~------~v~~~~di~~~~~~-g--~~~~~~~l~p~-~~~-~~~~~~~~  184 (259)
                      +...++++   .-+|.  |.     .|..|..      ++-+-+|+++...+ +  .++.+..|-.+ +.+ ....|   
T Consensus        99 ~~~~~~~~e~g~gp~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll---  175 (251)
T PF14499_consen   99 GETNLLFIEIGEGPYDVKPSEEAFDNGERPINVDKDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLL---  175 (251)
T ss_dssp             -EE-EEEEE-S---EE---------SS--TT--GGG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEE---
T ss_pred             CccEEEEEEeCCCccccccccccccccccccccccccceEeccccCCccccCCCCCCcceEEEEecCCCCCceeeEE---
Confidence            44445554   33443  43     2334444      35566777777765 2  56677777532 222 23443   


Q ss_pred             EecCCcccCcceeeccceEEEEEEceEEEEe--CCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          185 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       185 t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .-.|++..+..++|.-++..||++|+..|..  +++...+.+|++++-+....|++. .+++++.+++
T Consensus       176 ~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI  242 (251)
T PF14499_consen  176 LKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYI  242 (251)
T ss_dssp             EE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred             EEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCccccccc-ccCCCEEEEE
Confidence            3448898888999999999999999999944  467788999999999999999999 7788887765

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.28  E-value=2.5e-11  Score=100.43  Aligned_cols=74  Identities=16%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ..+.++++++.||.++.++.|+.-.|..+|++|+|.+.+||+...+++||.+|+|.|+.|.++|.|++||++|=
T Consensus        61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE  134 (151)
T PF01050_consen   61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE  134 (151)
T ss_pred             CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence            45889999999999999977777778899999999999999999999999999999999999999999999984

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.27  E-value=5.5e-11  Score=101.93  Aligned_cols=82  Identities=21%  Similarity=0.389  Sum_probs=67.1

Q ss_pred             eeCCCCCcceEEEEEEecCCccc-----Ccceee---ccceEEEEEEceEEEEeCCE-----EEEccCCcEEEeCCCCce
Q 025000          170 LLPQAVPFDFNIHIMDFQPGDFL-----NVKEVH---YNQHGLLLLEGQGIYRLGDS-----WYPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       170 l~p~~~~~~~~~~~~t~~PG~~~-----~~~~~H---~~eh~~~il~G~g~~~~~g~-----~~~v~~GD~i~~~~~~~H  236 (259)
                      ..+.....++.+.+.+++||...     ...|-|   ...|.||||+|+|.+.+++.     +++++|||++++++|..|
T Consensus        59 ~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H  138 (191)
T PRK04190         59 IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAH  138 (191)
T ss_pred             ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcE
Confidence            33544456788999999999962     112344   33499999999999999854     799999999999999999


Q ss_pred             eEEeCCCccEEEEEE
Q 025000          237 WYAALGKTRTRYLLY  251 (259)
Q Consensus       237 ~~~n~G~e~~~fi~~  251 (259)
                      .+.|+|++||+|++.
T Consensus       139 ~~iN~G~epl~fl~v  153 (191)
T PRK04190        139 RSVNTGDEPLVFLAC  153 (191)
T ss_pred             EeEECCCCCEEEEEE
Confidence            999999999999984

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.26  E-value=3.5e-11  Score=116.19  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEE
Q 025000           59 MGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  135 (259)
Q Consensus        59 ~g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~  135 (259)
                      .+.++.+.+++++||++.+.| ++..+|++||++|++++++ +|+++.|++||++|||++.+|+++|  +++++++++..
T Consensus       372 ~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~  450 (468)
T TIGR01479       372 QGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-GDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQS  450 (468)
T ss_pred             cCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            356899999999999987655 3344566699999999999 9999999999999999999999999  67999999853

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.20  E-value=6.9e-11  Score=96.87  Aligned_cols=80  Identities=20%  Similarity=0.333  Sum_probs=67.9

Q ss_pred             cCCCC-CcEEEEEEEecCCCcCCC-C-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEe--CCeE
Q 025000           56 TPAMG-SHFVMYLANMQENARSAL-P-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGSA  128 (259)
Q Consensus        56 sp~~g-~~f~~~~~~l~Pg~~~~~-h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N--~~~a  128 (259)
                      .-..| ++|-+.+..++||+.+.. | ++..|||+|||+||+++.+ ++..+.|+|||++=||+|  ..|.++|  +..+
T Consensus        34 G~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~  112 (161)
T COG3837          34 GDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGGETRLRPGDSAGFPAGVGNAHHLINRSDVIL  112 (161)
T ss_pred             hhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE-CCeeEEecCCceeeccCCCcceeEEeecCCceE
Confidence            33445 689999999999998754 5 4567999999999999999 999999999999999999  8999999  4477


Q ss_pred             EEEEEEEe
Q 025000          129 TLVVFERR  136 (259)
Q Consensus       129 ~~l~v~~~  136 (259)
                      ++|.+..+
T Consensus       113 ~yL~vG~r  120 (161)
T COG3837         113 RYLEVGTR  120 (161)
T ss_pred             EEEEeccc
Confidence            88887544

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.2e-10  Score=91.30  Aligned_cols=80  Identities=19%  Similarity=0.294  Sum_probs=64.5

Q ss_pred             CCC-cEEEEEEEecCCCcCCCCC-CCceEEEEEEECEEEEEEcCC---cEEEEeCCcEEEeCCCCcEEEEe--CCeEEEE
Q 025000           59 MGS-HFVMYLANMQENARSALPP-HDVERFIFVVQGSAMLTNASG---VSSKLMVDSYTYLPPNFAHSLRA--EGSATLV  131 (259)
Q Consensus        59 ~g~-~f~~~~~~l~Pg~~~~~h~-~~~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l  131 (259)
                      .|+ +++|.+++|+||+....|. .+-|..+|||+|+..++. |+   +..+.++||++|+|+|++|.-.|  ++++..+
T Consensus        41 vGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~-G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v  119 (142)
T COG4101          41 VGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY-GNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV  119 (142)
T ss_pred             cccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee-ccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence            454 7999999999999998885 567899999999999999 65   34689999999999999999998  4455555


Q ss_pred             EEEEeccccC
Q 025000          132 VFERRYASLE  141 (259)
Q Consensus       132 ~v~~~y~p~~  141 (259)
                      +.  +-.|.+
T Consensus       120 Ia--RsDp~~  127 (142)
T COG4101         120 IA--RSDPNP  127 (142)
T ss_pred             EE--ccCCCC
Confidence            44  444443

>smart00835 Cupin_1 Cupin

Probab=99.13  E-value=5.2e-10  Score=91.62  Aligned_cols=74  Identities=15%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             CCcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEcCCc------EEEEeCCcEEEeCCCCcEEEEe--CCeEEE
Q 025000           60 GSHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASGV------SSKLMVDSYTYLPPNFAHSLRA--EGSATL  130 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~~ge------~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~  130 (259)
                      +.++.+..++++||+....|.| ..+|++||++|++++.+ +++      ++.+++||+++||++..|.+.|  ++++++
T Consensus        27 ~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~  105 (146)
T smart00835       27 GLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV-VDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEF  105 (146)
T ss_pred             cCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE-EeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEE
Confidence            4579999999999999888865 48899999999999998 665      8999999999999999999999  567888


Q ss_pred             EEEE
Q 025000          131 VVFE  134 (259)
Q Consensus       131 l~v~  134 (259)
                      +++.
T Consensus       106 l~~~  109 (146)
T smart00835      106 VAFN  109 (146)
T ss_pred             EEEe
Confidence            8764

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=2.9e-10  Score=89.09  Aligned_cols=75  Identities=19%  Similarity=0.326  Sum_probs=66.4

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC---EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g---~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      +....|+.+|+.||+...-|+|...|-.+|+|+|+..++-++   +...++|||++|+|+|+||+-.|.+++|++-++
T Consensus        43 as~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI  120 (142)
T COG4101          43 ASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI  120 (142)
T ss_pred             cceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence            356788999999999998866666777799999999999997   567899999999999999999999999998654

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.11  E-value=4.2e-10  Score=92.31  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=73.7

Q ss_pred             eCCCCC-cceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCC--CceeEEeCCCccE
Q 025000          171 LPQAVP-FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF--VPQWYAALGKTRT  246 (259)
Q Consensus       171 ~p~~~~-~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~--~~H~~~n~G~e~~  246 (259)
                      +-+-.+ .++-++..+++||..+-.-|-| .++|-+|||+|++.++.||.++.|+|||++=.+.|  .-|.+.|.|+.++
T Consensus        33 lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~  112 (161)
T COG3837          33 LGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLINRSDVIL  112 (161)
T ss_pred             hhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEeecCCceE
Confidence            333444 5788999999999986554444 56677899999999999999999999999999999  5599999999999


Q ss_pred             EEEEEeecCCC
Q 025000          247 RYLLYKDVNRN  257 (259)
Q Consensus       247 ~fi~~k~~nr~  257 (259)
                      +||+-.+-+++
T Consensus       113 ~yL~vG~r~~~  123 (161)
T COG3837         113 RYLEVGTREPD  123 (161)
T ss_pred             EEEEecccccc
Confidence            99998877665

>PLN00212 glutelin; Provisional

Probab=99.07  E-value=3.7e-08  Score=95.22  Aligned_cols=74  Identities=11%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe---CCE-EE--EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GDS-WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~---~g~-~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ++.+.+..|.||+..+. |.|... +++||++|+|.+-+   +|. .+  .|++||++++|.|..|..++. ++.|.|++
T Consensus       347 ~LSa~rv~L~~gam~~P-Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~  424 (493)
T PLN00212        347 QMSATRVNLYQNALLSP-FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIA  424 (493)
T ss_pred             CeeEEEEEEcCCcccCC-eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEE
Confidence            57788999999999986 666655 77899999998765   322 22  799999999999999998775 67799999


Q ss_pred             Eee
Q 025000          251 YKD  253 (259)
Q Consensus       251 ~k~  253 (259)
                      +|-
T Consensus       425 F~t  427 (493)
T PLN00212        425 FKT  427 (493)
T ss_pred             eec
Confidence            993

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.07  E-value=1.2e-09  Score=102.54  Aligned_cols=89  Identities=12%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             cceEEEEecCCCC--CcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEc----CCcEEEEeCCcEEEeCCCCcE
Q 025000           48 NTLGAYLITPAMG--SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNA----SGVSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        48 ~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~----~ge~~~L~~Gd~i~~p~~~~H  120 (259)
                      +..++.+.++...  ..+.+..++|+||+..+.|.| ..+|++||++|++++++.    +++++.|++||.+|||+|..|
T Consensus       228 gG~~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H  307 (367)
T TIGR03404       228 GGTVRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGH  307 (367)
T ss_pred             CceEEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeE
Confidence            3444444444443  468999999999999999955 578999999999999982    257889999999999999999


Q ss_pred             EEEe--CCeEEEEEEEEe
Q 025000          121 SLRA--EGSATLVVFERR  136 (259)
Q Consensus       121 ~~~N--~~~a~~l~v~~~  136 (259)
                      .++|  ++++++|.+.+.
T Consensus       308 ~i~N~G~e~l~fL~if~s  325 (367)
T TIGR03404       308 YVENTGDETLVFLEVFKA  325 (367)
T ss_pred             EEEECCCCCEEEEEEECC
Confidence            9999  568999987433

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=99.04  E-value=1.4e-09  Score=88.50  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             eEEEEecCC-CC-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEEeCCcEEEeCCCC
Q 025000           50 LGAYLITPA-MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLPPNF  118 (259)
Q Consensus        50 ~~~~l~sp~-~g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g---------e~~~L~~Gd~i~~p~~~  118 (259)
                      .-..++... .| +.+++++-+++||.+++.|.|..||+++||+|+.++.+ +.         +++...++++++||.+.
T Consensus        29 sH~TvAGa~~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l-~~~~~~~pG~pqef~~~pnSTf~IPvn~  107 (167)
T PF02041_consen   29 SHITVAGALLHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYL-ASSHEKYPGKPQEFPIFPNSTFHIPVND  107 (167)
T ss_dssp             EEEEEE-HHHH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE---SSSSS--S-EEEEE-TTEEEEE-TT-
T ss_pred             ceEEeehhhhcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEE-ecccccCCCCceEEEecCCCeEEeCCCC
Confidence            333344443 25 57999999999999999999999999999999999998 43         45889999999999999


Q ss_pred             cEEEEe-C--CeEEEEEEEEe
Q 025000          119 AHSLRA-E--GSATLVVFERR  136 (259)
Q Consensus       119 ~H~~~N-~--~~a~~l~v~~~  136 (259)
                      +|+..| +  ++.+++++.++
T Consensus       108 ~HQv~NT~e~eDlqvlViiSr  128 (167)
T PF02041_consen  108 AHQVWNTNEHEDLQVLVIISR  128 (167)
T ss_dssp             -EEEE---SSS-EEEEEEEES
T ss_pred             cceeecCCCCcceEEEEEecC
Confidence            999999 3  58999998765

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.00  E-value=5.6e-09  Score=93.84  Aligned_cols=202  Identities=15%  Similarity=0.187  Sum_probs=136.5

Q ss_pred             eEEEEecCCC-CC-----cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEE
Q 025000           50 LGAYLITPAM-GS-----HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR  123 (259)
Q Consensus        50 ~~~~l~sp~~-g~-----~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~  123 (259)
                      ++-+|..|.. |+     .+-..+.-|.||...+.|.|...-+-||++|+...++.+|+...+++||++.-|++.-|---
T Consensus        73 Rvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHg  152 (351)
T COG3435          73 RVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHG  152 (351)
T ss_pred             EEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCC
Confidence            5556666643 21     23334556789999999999999999999999977665899999999999999999999888


Q ss_pred             eCCeEEEEEEEEec-------------------ccc---CC-C----Cccee-eccCC--------CCC-----------
Q 025000          124 AEGSATLVVFERRY-------------------ASL---EN-H----ITEQI-VGSTD--------KQP-----------  156 (259)
Q Consensus       124 N~~~a~~l~v~~~y-------------------~p~---~g-~----~p~~~-v~~~~--------di~-----------  156 (259)
                      |.+.--++|..-.=                   +|.   ++ .    .|.+. +++-.        +.+           
T Consensus       153 n~g~eP~iWlDgLDiplv~~l~~gFfe~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~l  232 (351)
T COG3435         153 NEGTEPCIWLDGLDIPLVNSLGAGFFEEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPYSPLFNYAWDRTREALERL  232 (351)
T ss_pred             CCCCCceEEEcccchHHHHhhcccccccCchhcCcccCCCCCchhhcCCCccccccCCCCCCCcccccccccHHHHHHHH
Confidence            85444455542110                   000   00 0    01110 00000        001           


Q ss_pred             -----CcccCCceEEEEEeeCCCCCcceE--EEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEE
Q 025000          157 -----LLETPGEVFQLRKLLPQAVPFDFN--IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW  229 (259)
Q Consensus       157 -----~~~~~g~~~~~~~l~p~~~~~~~~--~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~  229 (259)
                           ..|.  ++..++-.-|...+..|.  =..|.+-|-|.....|+|...-+|-|.+|.|...|||+.+.-.+||++.
T Consensus       233 a~~e~~dp~--dG~~~ryvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~rf~~~~~D~fv  310 (351)
T COG3435         233 ARLEEPDPF--DGYKMRYVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGERFDWSAGDIFV  310 (351)
T ss_pred             HhccCCCCC--CcceEEEecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCEEeeccCCCEEE
Confidence                 1111  234555555655443221  0122333444455678999999999999999999999999999999999


Q ss_pred             eCCCCceeEEeCCCccEEEEEEeec
Q 025000          230 MAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       230 ~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      +|+-.+|.+.|. .+++..++|.|-
T Consensus       311 VPsW~~~~~~~g-s~da~LFsfsD~  334 (351)
T COG3435         311 VPSWAWHEHVNG-SEDAVLFSFSDR  334 (351)
T ss_pred             ccCcceeecccC-CcceEEEecCCc
Confidence            999999999987 899999999884

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.99  E-value=2.6e-09  Score=86.89  Aligned_cols=104  Identities=12%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             cceeeccCCCCCCcccCCceEEEEEeeCC---CCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC----
Q 025000          145 TEQIVGSTDKQPLLETPGEVFQLRKLLPQ---AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----  217 (259)
Q Consensus       145 p~~~v~~~~di~~~~~~g~~~~~~~l~p~---~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g----  217 (259)
                      .-.+|.|++++|...+.-+++ ..+-+..   ..-.++.|=.-||.||..+|. |.|.-||.++||+|+|...+.+    
T Consensus         8 ~~~~Vr~iselpq~~ygr~GL-sH~TvAGa~~hGmkevEVwlQTfAPG~~TPi-HRHsCEEVFvVLkG~GTl~l~~~~~~   85 (167)
T PF02041_consen    8 GLPLVRNISELPQDNYGRPGL-SHITVAGALLHGMKEVEVWLQTFAPGSATPI-HRHSCEEVFVVLKGSGTLYLASSHEK   85 (167)
T ss_dssp             ---SEEEGGGS--B-TT-TTE-EEEEEE-HHHH--SSEEEEEEEE-TT-B--E-EEESS-EEEEEEE--EEEEE--SSSS
T ss_pred             CCceeEEhhhCccccccCCCc-ceEEeehhhhcCceeeeEEeeeecCCCCCCC-ccccccEEEEEEecceEEEEeccccc
Confidence            345788999999999843332 2332222   223567788899999999996 8999999999999999999975    


Q ss_pred             -----EEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEE
Q 025000          218 -----SWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLL  250 (259)
Q Consensus       218 -----~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~  250 (259)
                           ++.++.++|.+.+|+|+.|++.|++. |++..++
T Consensus        86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlV  124 (167)
T PF02041_consen   86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLV  124 (167)
T ss_dssp             S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEE
T ss_pred             CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEE
Confidence                 35889999999999999999999995 8887665

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.90  E-value=1.4e-08  Score=84.11  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=63.8

Q ss_pred             CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC--eEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG--SATLVVF  133 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~--~a~~l~v  133 (259)
                      +..|..-++++.||.+.+.+ ++...|..+|++|++++++ +|+.+.|.+||++++|+|..|++.|.+  +..++=+
T Consensus        60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~-~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV  135 (151)
T PF01050_consen   60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL-DDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV  135 (151)
T ss_pred             cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE-CCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence            56799999999999998876 4567888899999999999 999999999999999999999999944  5555554

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.88  E-value=1.9e-08  Score=82.13  Aligned_cols=89  Identities=17%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             EEEEeeCCCC----C-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEE--EeCC--------EEEE--ccCCcEE
Q 025000          166 QLRKLLPQAV----P-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY--RLGD--------SWYP--VQAGDVL  228 (259)
Q Consensus       166 ~~~~l~p~~~----~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~--~~~g--------~~~~--v~~GD~i  228 (259)
                      .++.+.+.+.    . ..++++..+++||+.... |.|...+.+||++|+|.+  ...+        ....  +++||++
T Consensus        16 ~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~P-h~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~   94 (144)
T PF00190_consen   16 RIREADSEDFPILLGLNGVAVRRVLIEPGGLRAP-HYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVF   94 (144)
T ss_dssp             EEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEE-EEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEE
T ss_pred             EEEEEChhhCcceecccceEEEeeehhcCCccce-eEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccce
Confidence            3555665553    1 467888899999999986 555777999999999984  3332        3344  9999999


Q ss_pred             EeCCCCceeEEeCC-CccEEEEEEeecC
Q 025000          229 WMAPFVPQWYAALG-KTRTRYLLYKDVN  255 (259)
Q Consensus       229 ~~~~~~~H~~~n~G-~e~~~fi~~k~~n  255 (259)
                      ++|+|.+||+.|+| ++.+.++++..-+
T Consensus        95 ~vP~G~~h~~~n~~~~~~~~~~~f~~~~  122 (144)
T PF00190_consen   95 VVPAGHPHWIINDGDDEALVLIIFDTNN  122 (144)
T ss_dssp             EE-TT-EEEEEECSSSSEEEEEEEEESS
T ss_pred             eeccceeEEEEcCCCCCCEEEEEEECCC
Confidence            99999999999999 5666666665543

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=98.88  E-value=2.7e-07  Score=82.91  Aligned_cols=181  Identities=17%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             EEEEecCCC-C-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC-cEEEEeCC--------cEEEeCCCCc
Q 025000           51 GAYLITPAM-G-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG-VSSKLMVD--------SYTYLPPNFA  119 (259)
Q Consensus        51 ~~~l~sp~~-g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g-e~~~L~~G--------d~i~~p~~~~  119 (259)
                      ...-++|.. | +-......+|++|........+.|-.++.|+|++++++ +| +.+.|..-        |++|+|.|..
T Consensus        13 ~~~~i~~~~~g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~-~g~~~~~l~~R~~vF~~~~d~lYvp~g~~   91 (261)
T PF04962_consen   13 LVYSITPENAGWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV-DGEEFYELGGRESVFDGPPDALYVPRGTK   91 (261)
T ss_dssp             -EEECTCCCCCCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE-TTEEEEEE-TTSSGGGS--EEEEE-TT--
T ss_pred             EEEEECCCccCccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe-CCceEEEecccccccCCCCcEEEeCCCCe
Confidence            344555543 3 33444478888998776667778999999999999999 88 77899988        9999999999


Q ss_pred             EEEEeCCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCC--ceEEEEEee-CCCCCcceEEEEEEecCCcc---cC
Q 025000          120 HSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG--EVFQLRKLL-PQAVPFDFNIHIMDFQPGDF---LN  193 (259)
Q Consensus       120 H~~~N~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g--~~~~~~~l~-p~~~~~~~~~~~~t~~PG~~---~~  193 (259)
                      -.+.+.+.+++.+...+   .+..-|..++. .+|++......  ....++.++ +.....+..+--.++.||+.   -|
T Consensus        92 ~~i~a~~~ae~~~~sap---a~~~~p~~~i~-~~dv~~~~~G~~~~~R~V~~~i~~~~~~~~~Lv~get~~~~G~WsSyP  167 (261)
T PF04962_consen   92 VVIFASTDAEFAVCSAP---AHRDYPPRLIT-PEDVPVEIRGAGNNSRTVRNIIDPNVPPASRLVVGETITPGGNWSSYP  167 (261)
T ss_dssp             EEEEESSTEEEEEEEEE----SS----EEE--TTTSEEEEESSGGGTEEEEEEESTTT---SS-EEEEEEETTT-EES-S
T ss_pred             EEEEEcCCCEEEEEccc---cCCCCCCEEEC-HHHCCeEEecCCCCcEEEEEeeCCCCcccceEEEEEEEeCCCccCCcC
Confidence            99998777999987655   34332444443 55666665532  223455555 44443443333444466653   44


Q ss_pred             cceeecc---------ceEEEEE----EceEE---EEe---CCEEEEccCCcEEEeCCCCceeE
Q 025000          194 VKEVHYN---------QHGLLLL----EGQGI---YRL---GDSWYPVQAGDVLWMAPFVPQWY  238 (259)
Q Consensus       194 ~~~~H~~---------eh~~~il----~G~g~---~~~---~g~~~~v~~GD~i~~~~~~~H~~  238 (259)
                       .|+|..         ||+||..    +|-|.   |..   .++.+.|+-||++.+|+| -|..
T Consensus       168 -PH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yHp~  229 (261)
T PF04962_consen  168 -PHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YHPV  229 (261)
T ss_dssp             -EEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-SE
T ss_pred             -CccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CCCc
Confidence             477777         7887763    25554   332   257889999999999999 4433

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.85  E-value=2e-08  Score=83.41  Aligned_cols=68  Identities=24%  Similarity=0.370  Sum_probs=57.1

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEc-CCc--EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEecc
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTNA-SGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA  138 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~ge--~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~  138 (259)
                      .||.+...|.+.++|++||++|++.+.+. +|+  +..|++||++.+|+|++|+.+..+.+..|+++++-.
T Consensus        36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~  106 (159)
T TIGR03037        36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRP  106 (159)
T ss_pred             CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCC
Confidence            45555667878899999999999999772 343  899999999999999999999877889999987633

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.81  E-value=6.8e-08  Score=82.88  Aligned_cols=74  Identities=11%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEecCCCc------CCCCCC---CceEEEEEEECEEEEEEcCCc-----EEEEeCCcEEEeCCCCcEEEEe-
Q 025000           60 GSHFVMYLANMQENAR------SALPPH---DVERFIFVVQGSAMLTNASGV-----SSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~------~~~h~~---~~Eef~yVl~G~l~v~v~~ge-----~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      +.++.+.+++|+||..      +..|.|   +..|++|||+|++.+.+ +++     .+.+++||.++||++..|++.| 
T Consensus        65 ~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l-~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~  143 (191)
T PRK04190         65 EGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLL-QDPEGEARWIEMEPGTVVYVPPYWAHRSVNT  143 (191)
T ss_pred             CCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEE-ecCCCcEEEEEECCCCEEEECCCCcEEeEEC
Confidence            4679999999999985      233544   44699999999999998 644     6899999999999999999999 


Q ss_pred             -CCeEEEEEEE
Q 025000          125 -EGSATLVVFE  134 (259)
Q Consensus       125 -~~~a~~l~v~  134 (259)
                       +++.+++.+-
T Consensus       144 G~epl~fl~v~  154 (191)
T PRK04190        144 GDEPLVFLACY  154 (191)
T ss_pred             CCCCEEEEEEE
Confidence             5577777763

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.76  E-value=1.1e-07  Score=83.22  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             CCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           57 PAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        57 p~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ...+..+....++++- ++.++ +...+|+.||++|++++++ +|+++.+++||++|||+|..|.|.+...+|++.+.
T Consensus       151 ~~d~s~m~aGf~~~~~-~sf~w-tl~~dEi~YVLEGe~~l~I-dG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~  225 (233)
T PRK15457        151 GDDGSSMAAGFMQWEN-AFFPW-TLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVA  225 (233)
T ss_pred             cCCCCceeeEEEEEec-Cccce-eccceEEEEEEEeEEEEEE-CCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEE
Confidence            3345677777777774 33333 4567999999999999999 99999999999999999999999876688887765

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.76  E-value=4.6e-08  Score=82.47  Aligned_cols=66  Identities=26%  Similarity=0.398  Sum_probs=56.7

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      -||.+...|.+.++|++|+++|++.|.+ .+|  ++..|++||++++|+|++|+.+..+.+..|++++.
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~  110 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERK  110 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeC
Confidence            4666667788889999999999999998 234  58999999999999999999988777888888766

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.74  E-value=1.4e-07  Score=82.38  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             eEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          164 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       164 ~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      .+....++..+.+..|..-.++++- ++.+  .+..+.|..|||+|+..+.+||+.+.++|||++|+++|..|.+.+.++
T Consensus       142 ~v~~~d~~~~~d~s~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~  218 (233)
T PRK15457        142 CVGLTDLVTGDDGSSMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSS  218 (233)
T ss_pred             cEEeeeeeccCCCCceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCCC
Confidence            4444555544446667777777774 4444  577778999999999999999999999999999999999977766655


Q ss_pred             ccEEEEE
Q 025000          244 TRTRYLL  250 (259)
Q Consensus       244 e~~~fi~  250 (259)
                      ..+.|+.
T Consensus       219 aRflyV~  225 (233)
T PRK15457        219 VRFLYVA  225 (233)
T ss_pred             eeEEEEE
Confidence            5554444

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.73  E-value=4.6e-08  Score=84.26  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=56.0

Q ss_pred             EEEEecCCcccCcceeec-cc--eEEEEEEceEEEEeCC-----EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          182 HIMDFQPGDFLNVKEVHY-NQ--HGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       182 ~~~t~~PG~~~~~~~~H~-~e--h~~~il~G~g~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ....+.||+..-. |-|. ..  |.||+|+|+|.|.+..     .+..+++||+||+|++--|...|+|++||+|+.
T Consensus        83 ~e~~~t~G~~~~~-H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~  158 (209)
T COG2140          83 AEVFKTPGAMREL-HYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLN  158 (209)
T ss_pred             eEEEecCCccccc-ccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEE
Confidence            3566778876544 3333 22  5899999999999986     678999999999999999999999999999874

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.73  E-value=1.2e-07  Score=75.22  Aligned_cols=102  Identities=18%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             eeeccCCCCCCcc--cCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe--CCEEEEc
Q 025000          147 QIVGSTDKQPLLE--TPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYPV  222 (259)
Q Consensus       147 ~~v~~~~di~~~~--~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g~~~~v  222 (259)
                      ++|.+.+|+..++  +.++++..+-|+-++.+..|.|+..++.||.....+-.|.. |..|+++|+|.+.+  +|+.+++
T Consensus         1 MiVR~l~di~~Tdr~V~~~~w~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHl-EAvyci~G~Gev~~~~~G~~~~i   79 (126)
T PF06339_consen    1 MIVRSLDDIRGTDRDVDAENWESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHL-EAVYCIEGEGEVEDLDTGEVHPI   79 (126)
T ss_pred             CeEEEHHHhcCCceeEEcCCceEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCce-EEEEEEeceEEEEEccCCcEEEc
Confidence            3556666665554  33444444544433335666777999999999876544444 77999999999988  7999999


Q ss_pred             cCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          223 QAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +||.+..+...+.|.+.+..  +++.+|-
T Consensus        80 ~pGt~YaLd~hD~H~lra~~--dm~~vCV  106 (126)
T PF06339_consen   80 KPGTMYALDKHDRHYLRAKT--DMRLVCV  106 (126)
T ss_pred             CCCeEEecCCCccEEEEecC--CEEEEEE
Confidence            99999999999999999875  8887773

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.70  E-value=2.2e-07  Score=70.14  Aligned_cols=80  Identities=23%  Similarity=0.265  Sum_probs=58.7

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      .++.++.|...+......+..+.++||+.+|. |.|...+.+|||+|.-.+  ++..+  .+||+++.+++..|....  
T Consensus         8 ~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~-H~H~g~ee~~VLeG~~~d--~~~~~--~~G~~~~~p~g~~h~~~s--   80 (91)
T PF12973_consen    8 PGVSVKPLHRDEGETGERVSLLRLEPGASLPR-HRHPGGEEILVLEGELSD--GDGRY--GAGDWLRLPPGSSHTPRS--   80 (91)
T ss_dssp             TTEEEEEEEECSSSTTEEEEEEEE-TTEEEEE-EEESS-EEEEEEECEEEE--TTCEE--ETTEEEEE-TTEEEEEEE--
T ss_pred             CCEEEEEeccCCCcccCEEEEEEECCCCCcCc-cCCCCcEEEEEEEEEEEE--CCccC--CCCeEEEeCCCCccccCc--
Confidence            34556666655544567788999999999997 667777888999998875  44444  999999999999999994  


Q ss_pred             CccEEEE
Q 025000          243 KTRTRYL  249 (259)
Q Consensus       243 ~e~~~fi  249 (259)
                      ++.+..+
T Consensus        81 ~~gc~~~   87 (91)
T PF12973_consen   81 DEGCLIL   87 (91)
T ss_dssp             SSCEEEE
T ss_pred             CCCEEEE
Confidence            5665544

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.66  E-value=9.2e-08  Score=74.83  Aligned_cols=55  Identities=22%  Similarity=0.385  Sum_probs=43.3

Q ss_pred             eeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       196 ~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      |.|..-+.+||++|+|.+.+||+.+.|+|||+++++|+..|.+...++++++++.
T Consensus        19 h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~   73 (136)
T PF02311_consen   19 HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW   73 (136)
T ss_dssp             ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred             EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence            6677778999999999999999999999999999999999999999977777554

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.65  E-value=2.1e-07  Score=70.31  Aligned_cols=80  Identities=16%  Similarity=0.165  Sum_probs=59.1

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCe
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS  127 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~  127 (259)
                      +.....|-.........+.++.++||+..+.|.|.+-|.+|||+|++.  . ++.  ...+||+++.|++..|++..++.
T Consensus         9 Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~--d-~~~--~~~~G~~~~~p~g~~h~~~s~~g   83 (91)
T PF12973_consen    9 GVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELS--D-GDG--RYGAGDWLRLPPGSSHTPRSDEG   83 (91)
T ss_dssp             TEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEE--E-TTC--EEETTEEEEE-TTEEEEEEESSC
T ss_pred             CEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEE--E-CCc--cCCCCeEEEeCCCCccccCcCCC
Confidence            344455554333346778899999999999887777777799999998  3 444  46999999999999999998767


Q ss_pred             EEEEE
Q 025000          128 ATLVV  132 (259)
Q Consensus       128 a~~l~  132 (259)
                      |.+++
T Consensus        84 c~~~v   88 (91)
T PF12973_consen   84 CLILV   88 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77665

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.63  E-value=4e-07  Score=68.24  Aligned_cols=71  Identities=14%  Similarity=0.160  Sum_probs=56.1

Q ss_pred             cEEEEEEEecCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000           62 HFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  133 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~-h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v  133 (259)
                      .|....++|+||+.-+. +.....-.+||++|.+++++ .+.++.+.+|+++++|+|-...++|  +.+|+++.+
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti-~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~   84 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI-HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV   84 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE-cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence            67788999999986643 45677888999999999999 9999999999999999999999999  778998875

>PLN00212 glutelin; Provisional

Probab=98.62  E-value=2e-07  Score=90.27  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             EEEEeeCCC--C-CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-------------------------
Q 025000          166 QLRKLLPQA--V-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-------------------------  217 (259)
Q Consensus       166 ~~~~l~p~~--~-~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g-------------------------  217 (259)
                      .++...+.+  . ....++.+.+++|++-+.. |+|...+.+||++|+|++-+=-                         
T Consensus        64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP-~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~  142 (493)
T PLN00212         64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLP-RYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF  142 (493)
T ss_pred             eeeecCCCChhhcccceEEEEEEecCCcccCc-cccCCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence            344455533  2 2456788999999999986 6668889999999999876531                         


Q ss_pred             -----EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          218 -----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       218 -----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                           +.+.+++||+|.+|+|..||++|.|+++++.|+.-|+|-
T Consensus       143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n  186 (493)
T PLN00212        143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINN  186 (493)
T ss_pred             ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccc
Confidence                 447999999999999999999999999999999988875

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.50  E-value=1.6e-06  Score=74.73  Aligned_cols=87  Identities=14%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             CCCcceEEEEecCCC-CCcEEEEEEEecCCCcCCCC-CCCceE--EEEEEECEEEEEE--cCC--cEEEEeCCcEEEeCC
Q 025000           45 EWTNTLGAYLITPAM-GSHFVMYLANMQENARSALP-PHDVER--FIFVVQGSAMLTN--ASG--VSSKLMVDSYTYLPP  116 (259)
Q Consensus        45 ~~~~~~~~~l~sp~~-g~~f~~~~~~l~Pg~~~~~h-~~~~Ee--f~yVl~G~l~v~v--~~g--e~~~L~~Gd~i~~p~  116 (259)
                      ...+.++++-.++.. |+  .-.++.+.||+..+.| |...+|  .+|||+|+.++.+  .+|  .+..+++||.+|+|+
T Consensus        63 ~~~~g~L~~~~t~~~pGs--~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp  140 (209)
T COG2140          63 GERGGDLRLDVTRIFPGS--AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPP  140 (209)
T ss_pred             cccCCeEEEEeeccCCCc--cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCC
Confidence            333455566565544 44  3346678899988888 445555  9999999999998  123  457889999999999


Q ss_pred             CCcEEEEe--CCeEEEEEE
Q 025000          117 NFAHSLRA--EGSATLVVF  133 (259)
Q Consensus       117 ~~~H~~~N--~~~a~~l~v  133 (259)
                      +--|+.+|  +++..|+.+
T Consensus       141 ~~gH~t~N~Gd~pLvf~~v  159 (209)
T COG2140         141 GYGHYTINTGDEPLVFLNV  159 (209)
T ss_pred             CcceEeecCCCCCEEEEEE
Confidence            99999999  556666655

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=98.48  E-value=6.6e-07  Score=73.87  Aligned_cols=81  Identities=6%  Similarity=0.140  Sum_probs=60.8

Q ss_pred             EEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           53 YLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        53 ~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      -+++...+..+....++|+.. ..+. .-..+|+.|||+|++++.+ +|+++..++||.+|||.|..-.|.....++++.
T Consensus        67 dv~~~~e~~~l~~Gf~~le~~-~f~w-tl~YDEi~~VlEG~L~i~~-~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Y  143 (152)
T PF06249_consen   67 DVFSSDESPRLSAGFMELEKT-SFPW-TLTYDEIKYVLEGTLEISI-DGQTVTAKPGDVIFIPKGSTITFSTPDYARFFY  143 (152)
T ss_dssp             EEE-GGGT-SSEEEEEEEEEE-EEEE-E-SSEEEEEEEEEEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEE
T ss_pred             EeccCCCCCceeeEEEEEeCC-CccE-EeecceEEEEEEeEEEEEE-CCEEEEEcCCcEEEECCCCEEEEecCCCEEEEE
Confidence            355555566777778888763 2222 3568999999999999999 999999999999999999999998777899998


Q ss_pred             EEEe
Q 025000          133 FERR  136 (259)
Q Consensus       133 v~~~  136 (259)
                      +..|
T Consensus       144 v~yP  147 (152)
T PF06249_consen  144 VTYP  147 (152)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            8644

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.46  E-value=1.4e-06  Score=71.14  Aligned_cols=76  Identities=14%  Similarity=0.254  Sum_probs=57.7

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cC-C-------cEEE--EeCCcEEEeCCCCcEEEEeC--Ce
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-AS-G-------VSSK--LMVDSYTYLPPNFAHSLRAE--GS  127 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~-g-------e~~~--L~~Gd~i~~p~~~~H~~~N~--~~  127 (259)
                      ..+.+.+..|.||+...+|.|...+++||++|++.+.+ .. +       ....  |++||.+++|+|.+|.+.|.  .+
T Consensus        32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~  111 (144)
T PF00190_consen   32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE  111 (144)
T ss_dssp             TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred             cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence            46777788889999888886699999999999999766 22 2       2345  99999999999999999995  45


Q ss_pred             EEEEEEEEe
Q 025000          128 ATLVVFERR  136 (259)
Q Consensus       128 a~~l~v~~~  136 (259)
                      ...+.+..-
T Consensus       112 ~~~~~~f~~  120 (144)
T PF00190_consen  112 ALVLIIFDT  120 (144)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEC
Confidence            555554433

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=98.43  E-value=7.1e-07  Score=65.05  Aligned_cols=63  Identities=14%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      .+.....+..||... ..... +|++|||+|+++++..+|++++++|||+++||+|..-.|.-.+
T Consensus         6 ~~~~g~w~~~pg~~~-~~~~~-~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~~   68 (74)
T PF05899_consen    6 VFSAGVWECTPGKFP-WPYPE-DEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVRE   68 (74)
T ss_dssp             SEEEEEEEEECEEEE-EEESS-EEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred             CEEEEEEEECCceeE-eeCCC-CEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence            566677777787533 22223 9999999999999986788999999999999999988887533

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=98.41  E-value=4.2e-05  Score=68.92  Aligned_cols=162  Identities=10%  Similarity=0.136  Sum_probs=110.5

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCc-EEEEe---CCeEEEEEEEEeccccCCCCcceeeccCCCC
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  155 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~-H~~~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di  155 (259)
                      ....|-.++.|.|+++|++ +|+++.|++.|++|+|.|.. -.+..   ..+++|.+...+   .+..-|..++. .+|+
T Consensus        71 l~rrE~giV~lgG~~~V~v-dG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP---A~~~~PtrlI~-~~d~  145 (276)
T PRK00924         71 LERRELGIINIGGAGTVTV-DGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP---AHTTYPTKKIT-IADA  145 (276)
T ss_pred             cCCcEEEEEEccceEEEEE-CCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc---cCCCCCCEEEC-HHHC
Confidence            4567788899999999999 99999999999999999987 55543   457899998544   44333444443 5555


Q ss_pred             CCcccCC----ceEEEEEee-CCCCC-cceEEEEEEecCCc---ccCcceeec-cceEEEE---EEceEEEEeCC---EE
Q 025000          156 PLLETPG----EVFQLRKLL-PQAVP-FDFNIHIMDFQPGD---FLNVKEVHY-NQHGLLL---LEGQGIYRLGD---SW  219 (259)
Q Consensus       156 ~~~~~~g----~~~~~~~l~-p~~~~-~~~~~~~~t~~PG~---~~~~~~~H~-~eh~~~i---l~G~g~~~~~g---~~  219 (259)
                      .......    ...+++.++ |+... -.+.|-...+.||+   +.|. |+|. ..|.||-   =+++-++.++|   +.
T Consensus       146 ~~~~rG~~~~sN~R~I~~il~p~~~~s~qLlmG~tvltPGg~WSSyPP-HkHDrr~E~YlYf~l~~~qrV~h~mG~pdET  224 (276)
T PRK00924        146 SPVTLGDLETSNRRTINKYIHPDVLETCQLVMGLTELEPGSVWNTMPC-HTHDRRMEVYFYFDMPEDARVFHFMGEPQET  224 (276)
T ss_pred             CeEeccCCCCCCcEEEEEecCCCCCccccEEEEEEEEcCCCCCCCCCC-ccCCCCcceEEEEEcCCCceEEecCCCccce
Confidence            5555421    222455555 66554 45777777789999   4554 5665 3355432   35667788877   44


Q ss_pred             --EEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          220 --YPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       220 --~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                        .-|+-+|++..|+---|+=.  |...-+||
T Consensus       225 rh~~v~n~~aVisP~wsih~g~--gt~~y~fi  254 (276)
T PRK00924        225 RHIVVHNEQAVISPSWSIHSGV--GTSNYTFI  254 (276)
T ss_pred             eeEEEECCCEEECCCcceecCc--CccccEEE
Confidence              77899999999998888754  33444444

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.36  E-value=1.5e-06  Score=67.85  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             CCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC--eEEEEEEEEe
Q 025000           77 ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG--SATLVVFERR  136 (259)
Q Consensus        77 ~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~--~a~~l~v~~~  136 (259)
                      ..|.|+.=+++||++|++++.+ +|+++.+++||.+++||+..|++....  +.+..|+.-.
T Consensus        17 ~~h~h~~~~i~~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~   77 (136)
T PF02311_consen   17 PPHWHDFYEIIYVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS   77 (136)
T ss_dssp             EEETT-SEEEEEEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred             CCEECCCEEEEEEeCCEEEEEE-CCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence            4567889999999999999999 999999999999999999999999733  7777777433

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.36  E-value=1.4e-06  Score=78.55  Aligned_cols=71  Identities=17%  Similarity=0.312  Sum_probs=57.2

Q ss_pred             EEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+.+-...+...++. |.|.+-|.+||++|+|.+.+||+.+.+++||++|++||..|++...++..+..+.|
T Consensus        19 ~~~~~~~~~~~~~~~-H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~~~~~~~   89 (290)
T PRK13501         19 PVAVTNRYPQETFVE-HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIY   89 (290)
T ss_pred             ceEEecCCCCCCCcc-ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccccCCeEEEEEEe
Confidence            333444455566664 78888899999999999999999999999999999999999999776655555544

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.32  E-value=1.3e-06  Score=80.86  Aligned_cols=76  Identities=14%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEE-EeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      .+...+-.|.||...+. |.|...-..||++|+|.| .+||+..+.++||++.+|+..+|...|.|++++.+|-+-|.
T Consensus        80 tl~a~~q~l~pGe~~~~-HRht~sAl~~vveG~G~~t~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~  156 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPS-HRHTQSALRFIVEGKGAFTAVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDI  156 (335)
T ss_pred             hHHhhhEEeCCCCCCCc-cccccceEEEEEEcCceEEEECCEEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCH
Confidence            34456677889999986 788888999999999974 66999999999999999999999999999999888777663

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.29  E-value=6.2e-06  Score=67.54  Aligned_cols=82  Identities=15%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000           52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus        52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l  131 (259)
                      .-|++-..|..+...++++++ ..-++ .-..+|.-|||+|++.+.+ +|++...+|||.+|+|-|..-.|.-.+.|+++
T Consensus        89 tdLvt~~~g~~l~aG~m~~~~-~tf~w-tl~yDe~d~VlEGrL~V~~-~g~tv~a~aGDvifiPKgssIefst~gea~fl  165 (176)
T COG4766          89 TDLVTEQEGSRLGAGLMEMKN-TTFPW-TLNYDEIDYVLEGRLHVRI-DGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFL  165 (176)
T ss_pred             eceeecccCCccccceeeecc-ccCcc-eecccceeEEEeeeEEEEE-cCCeEecCCCcEEEecCCCeEEEeccceEEEE
Confidence            335666667777777888877 33333 3567999999999999999 99999999999999999999999877779999


Q ss_pred             EEEEe
Q 025000          132 VFERR  136 (259)
Q Consensus       132 ~v~~~  136 (259)
                      .+..|
T Consensus       166 yvtyP  170 (176)
T COG4766         166 YVTYP  170 (176)
T ss_pred             EEEcc
Confidence            98543

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.27  E-value=2e-05  Score=62.74  Aligned_cols=91  Identities=14%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             eEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEEeCCcEEEeCCCCcEEEEeCCeE
Q 025000           50 LGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSA  128 (259)
Q Consensus        50 ~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a  128 (259)
                      ..+.++-...|-+|++...++.||.....|-..--|.+|+++|+.+++. .+|+++.++||..-.......|.++..++.
T Consensus        22 ~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm  101 (126)
T PF06339_consen   22 ESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDM  101 (126)
T ss_pred             eEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCE
Confidence            3344555566778999999999998887775555789999999999987 479999999999999999999999997789


Q ss_pred             EEEEEEEeccccCC
Q 025000          129 TLVVFERRYASLEN  142 (259)
Q Consensus       129 ~~l~v~~~y~p~~g  142 (259)
                      +++.+-.|  |+-|
T Consensus       102 ~~vCVFnP--pltG  113 (126)
T PF06339_consen  102 RLVCVFNP--PLTG  113 (126)
T ss_pred             EEEEEcCC--CCcC
Confidence            99888554  5544

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=98.27  E-value=5e-06  Score=68.68  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          162 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       162 g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +..+.++.++..+.+..|..-.|+++.. ..+  -+=...|..|||+|+-.+.++|+.+..+|||++|+|.|..=-|...
T Consensus        60 ~~~~~~~dv~~~~e~~~l~~Gf~~le~~-~f~--wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~  136 (152)
T PF06249_consen   60 GDKVYIKDVFSSDESPRLSAGFMELEKT-SFP--WTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTP  136 (152)
T ss_dssp             S--EEE-EEE-GGGT-SSEEEEEEEEEE-EEE--EE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEE
T ss_pred             CccEEEEEeccCCCCCceeeEEEEEeCC-Ccc--EEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecC
Confidence            3567788887665566677778888873 443  4556679999999999999999999999999999999999888777


Q ss_pred             CCccEEEEEE
Q 025000          242 GKTRTRYLLY  251 (259)
Q Consensus       242 G~e~~~fi~~  251 (259)
                      +...+-|..|
T Consensus       137 ~~a~~~Yv~y  146 (152)
T PF06249_consen  137 DYARFFYVTY  146 (152)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCEEEEEEEC
Confidence            6666666555

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.23  E-value=1.5e-05  Score=59.71  Aligned_cols=73  Identities=12%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      -++.-++.|.||+.=+.-.+..+.-.+||++|...+++++...-+.+||..++|+|-.=+|+|.|+++.+.+.
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF   83 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF   83 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence            6777899999999988777777878899999999999999999999999999999999999999999988654

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.22  E-value=7.4e-06  Score=71.60  Aligned_cols=91  Identities=13%  Similarity=0.018  Sum_probs=66.0

Q ss_pred             CCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCC
Q 025000          155 QPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV  234 (259)
Q Consensus       155 i~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~  234 (259)
                      ++|+...+ ++....|...+..  ..++.+.++||+.+|. |+|.-.|..+||+|.  +.+++  -...+||++..+++.
T Consensus       106 ~~W~~~~~-gv~~~~L~~~~~~--~~v~Ll~i~pG~~~p~-H~H~G~E~tlVLeG~--f~de~--g~y~~Gd~i~~p~~~  177 (215)
T TIGR02451       106 WRWRGPGG-RVSRVTLPIDDGN--ARVRLLYIEAGQSIPQ-HTHKGFELTLVLHGA--FSDET--GVYGVGDFEEADGSV  177 (215)
T ss_pred             CCccCCCC-CeEEEeccCCCCC--cEEEEEEECCCCccCC-CcCCCcEEEEEEEEE--EEcCC--CccCCCeEEECCCCC
Confidence            55665543 3333334332322  3568999999999997 566666788999999  44444  457999999999999


Q ss_pred             ceeEEeCCCccEEEEEEee
Q 025000          235 PQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       235 ~H~~~n~G~e~~~fi~~k~  253 (259)
                      .|+..+.++++|..+.--|
T Consensus       178 ~H~p~a~~~~~Cicl~v~d  196 (215)
T TIGR02451       178 QHQPRTVSGGDCLCLAVLD  196 (215)
T ss_pred             CcCcccCCCCCeEEEEEec
Confidence            9999999999888776543

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=98.16  E-value=1.4e-05  Score=69.29  Aligned_cols=77  Identities=13%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             ceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          178 DFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      .|.=-++++.|+|-.-..+.. ..|-.+||+||+..+.++|+.+.+++|+++|+|||..|.+.|...++.+|-.||-.
T Consensus        60 tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~  137 (264)
T COG3257          60 TFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR  137 (264)
T ss_pred             hhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence            455557889898854444443 45566899999999999999999999999999999999999999999999998753

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.15  E-value=2.4e-05  Score=66.58  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             eEEEEEEecCCccc--------Cccee----eccceEEEEEEceEEEEeC---C------EEEEccCCcEEEeCCCCcee
Q 025000          179 FNIHIMDFQPGDFL--------NVKEV----HYNQHGLLLLEGQGIYRLG---D------SWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       179 ~~~~~~t~~PG~~~--------~~~~~----H~~eh~~~il~G~g~~~~~---g------~~~~v~~GD~i~~~~~~~H~  237 (259)
                      ..+-+..+.||---        ++|..    -...|.|++|+|+|.+.+.   +      ...++++||++++||+--|-
T Consensus        50 L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~  129 (182)
T PF06560_consen   50 LRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR  129 (182)
T ss_dssp             EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred             EEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence            66667777777431        11111    1245999999999999885   3      24789999999999999999


Q ss_pred             EEeCCCccEEEEEE
Q 025000          238 YAALGKTRTRYLLY  251 (259)
Q Consensus       238 ~~n~G~e~~~fi~~  251 (259)
                      ..|+|+++|+|...
T Consensus       130 tIN~g~~~L~~~~~  143 (182)
T PF06560_consen  130 TINTGDEPLVFAAW  143 (182)
T ss_dssp             EEE-SSS-EEEEEE
T ss_pred             EEECCCCcEEEEEE
Confidence            99999999999865

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.11  E-value=1.5e-05  Score=69.72  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC--CeEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATLVVFE  134 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~--~~a~~l~v~  134 (259)
                      +....++.++||+..+.|.|.+.|+.+||+|+..  - ++  -.+.+||++..|++..|+.++.  ++|.++.+.
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--d-e~--g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~  195 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--D-ET--GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL  195 (215)
T ss_pred             CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--c-CC--CccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence            3466899999999999998999999999999964  2 33  3689999999999999999984  458877773

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.11  E-value=2.5e-05  Score=64.06  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      ..+....|...+.+..+....+..+| .++|  .+-..-|+-|||||+..+.++|+....+|||+||||-|-+=-|.-+|
T Consensus        84 ~~V~~tdLvt~~~g~~l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~g  160 (176)
T COG4766          84 DCVYTTDLVTEQEGSRLGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTG  160 (176)
T ss_pred             CeEEeeceeecccCCccccceeeecc-ccCc--ceecccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccc
Confidence            44566667776667777777888888 6665  35555699999999999999999999999999999999999999888


Q ss_pred             CccEEEEEE
Q 025000          243 KTRTRYLLY  251 (259)
Q Consensus       243 ~e~~~fi~~  251 (259)
                      ...+-|+.|
T Consensus       161 ea~flyvty  169 (176)
T COG4766         161 EAKFLYVTY  169 (176)
T ss_pred             eEEEEEEEc
Confidence            755555544

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.11  E-value=1.2e-05  Score=73.57  Aligned_cols=64  Identities=20%  Similarity=0.363  Sum_probs=53.0

Q ss_pred             cCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      -|-...+. |.|..-|.+||++|.|.+.+||+.+.+++||+++++|++.|.+....+.....++|
T Consensus        56 ~~~~~~~~-H~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~  119 (312)
T PRK13500         56 YPQDVFAE-HTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIY  119 (312)
T ss_pred             CCCCCCCc-cccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccccCCceEEEEEE
Confidence            34444554 67777799999999999999999999999999999999999999876655555554

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.0007  Score=59.37  Aligned_cols=168  Identities=18%  Similarity=0.284  Sum_probs=111.2

Q ss_pred             EEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEE-EEe---------CCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           65 MYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSS-KLM---------VDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        65 ~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~-~L~---------~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ..+.+|.+|.+......+.|.++.+++|++++.. +|+++ .++         +=|++|+|+|...++...+.+++-+- 
T Consensus        31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~-~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC-  108 (270)
T COG3718          31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA-HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVC-  108 (270)
T ss_pred             EEEEEccCCCcccccCCCceEEEEEEeeeEEEee-ccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEE-
Confidence            3477889998887777788999999999999998 77553 343         66999999999999998888877776 


Q ss_pred             EeccccCCCCcceeeccCCCCCCccc-CCc-eEEEEEeeCCCC-Ccc--eEEEEEEecCCccc-Cc-ceeec--------
Q 025000          135 RRYASLENHITEQIVGSTDKQPLLET-PGE-VFQLRKLLPQAV-PFD--FNIHIMDFQPGDFL-NV-KEVHY--------  199 (259)
Q Consensus       135 ~~y~p~~g~~p~~~v~~~~di~~~~~-~g~-~~~~~~l~p~~~-~~~--~~~~~~t~~PG~~~-~~-~~~H~--------  199 (259)
                        ++|..|..|..+++.. |++.+.- .|. ...+.-++|++. ..+  ..+-++  -||+.. .| .|.|.        
T Consensus       109 --~AP~~g~~~~~~i~p~-~~~~e~RGkG~NtR~VhNIlp~~~~~AdsLLVvEV~--Tp~Gn~SSYPPHKHD~d~~p~Es  183 (270)
T COG3718         109 --SAPGKGGLPTKLIKPE-DNGVEHRGKGRNTRYVHNILPEDAPVADSLLVVEVI--TPGGNWSSYPPHKHDEDNLPHES  183 (270)
T ss_pred             --eCCCCCCcceEEeccc-cCCceeeccccceeeEEccCCCCCccccceEEEEEE--cCCCCcCCCCCCcccccCCccch
Confidence              4556665677776643 3333322 221 112223567654 344  444444  487752 11 34552        


Q ss_pred             -cceEEEEE----Ec---eEEEEeCC---EEEEccCCcEEEeCCC-----CceeEE
Q 025000          200 -NQHGLLLL----EG---QGIYRLGD---SWYPVQAGDVLWMAPF-----VPQWYA  239 (259)
Q Consensus       200 -~eh~~~il----~G---~g~~~~~g---~~~~v~~GD~i~~~~~-----~~H~~~  239 (259)
                       -||+||--    +|   +=+|++++   +..-|.-||++.+|-|     .+|+|.
T Consensus       184 ~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GYHPv~ap~GYd  239 (270)
T COG3718         184 YLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGYHPVGAPHGYD  239 (270)
T ss_pred             hhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCcCccccCCccc
Confidence             35666653    23   23677774   7788999999999865     456654

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.07  E-value=2.5e-05  Score=65.07  Aligned_cols=55  Identities=13%  Similarity=0.328  Sum_probs=42.5

Q ss_pred             ceeeccceEEEEEEceEEEEe---CCEEE--EccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          195 KEVHYNQHGLLLLEGQGIYRL---GDSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       195 ~~~H~~eh~~~il~G~g~~~~---~g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      -|+|..+|+-||++|+|.+.+   +++|.  .+++||+|.+|+|..|||.-+-+..++-|
T Consensus        87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~ai  146 (157)
T PF03079_consen   87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAI  146 (157)
T ss_dssp             -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEE
T ss_pred             eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEE
Confidence            589999999999999999988   67887  89999999999999999995544444433

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.02  E-value=2.9e-05  Score=69.49  Aligned_cols=47  Identities=13%  Similarity=0.025  Sum_probs=43.1

Q ss_pred             ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       195 ~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      .|.|..-|.+||++|.+.+.+||+.+.+++||++|++||..|.+...
T Consensus        38 ~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         38 LHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             CcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeee
Confidence            47777779999999999999999999999999999999999977544

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.99  E-value=9.1e-06  Score=72.41  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             CCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          188 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       188 PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      |....+. |.|..-+.+||++|.|.+.+||+.+++++||+++++|+..|.+.+..+..+.+++|
T Consensus        24 ~~~~~~~-H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~~~~~~~~~   86 (278)
T PRK13503         24 PQAAFPE-HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTDNLCLTNVLY   86 (278)
T ss_pred             ccccccc-cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhccCceEEEEee
Confidence            3344554 67888899999999999999999999999999999999999988775434444444

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.94  E-value=3.8e-05  Score=68.80  Aligned_cols=62  Identities=16%  Similarity=0.303  Sum_probs=50.5

Q ss_pred             cCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      .|.-..+. |.|..-+.+|+++|+|.+.+||+.+.+++||+++++|+..|.+...++....++
T Consensus        26 ~~~~~~~~-H~h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~   87 (282)
T PRK13502         26 YPQDVFAE-HTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVNDLVLQNI   87 (282)
T ss_pred             CCCCCCCc-cccceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccCCceEEEE
Confidence            44444554 667777999999999999999999999999999999999999987665433333

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.88  E-value=6.6e-05  Score=62.49  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             EEEEEEe-cCCcccCcceeeccceEEEEEEceEEEEe--CCE--EEEccCCcEEEeCCCCceeEEeCCC
Q 025000          180 NIHIMDF-QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDS--WYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       180 ~~~~~t~-~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g~--~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      -+.++.+ -||....+ |.|..+|-+|+|+|...+.+  +|+  .+.+++||++++|+|++|+....++
T Consensus        28 ~~~v~~vgGpn~R~d~-H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~   95 (159)
T TIGR03037        28 EFMVTVVGGPNARTDF-HDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAG   95 (159)
T ss_pred             cEEEEEeCCCCCCccc-ccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence            3445555 56666877 45667899999999999944  554  9999999999999999999987543

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.88  E-value=0.00011  Score=65.78  Aligned_cols=70  Identities=20%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      .+.++...-. +...+.|.|+.-|++||++|++++.+ +|+++.+++||.+++|||..|.... .++.+.+.+
T Consensus        23 ~~~~~~~~~~-~~~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~~l   93 (278)
T PRK10296         23 NFHVFIYNKT-ESVSGLHQHDYYEFTLVLTGRYYQEI-NGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNV   93 (278)
T ss_pred             eEEEEEEehh-hcCCCCcccccEEEEEEEeceEEEEE-CCEEEEECCCcEEEeCCCCccceeeeCCCcEEEEE
Confidence            4444444322 32346778999999999999999999 9999999999999999999997654 334454433

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.85  E-value=5.6e-05  Score=69.06  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      -+.+.+..-.|-...+ .|-|..-|.+|+++|.+.+.+||+.+.+++||+++++++.+|.+...++..
T Consensus        25 ~~~~~~~~~~~~~m~~-~HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         25 YQRLEIEFRPPHIMPT-SHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             CceeEEEeeCCCCCCC-CCccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence            3445555555555544 478888899999999999999999999999999999999999988766543

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.85  E-value=6.5e-05  Score=67.75  Aligned_cols=55  Identities=11%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      .+......|.|+.-|++||++|++++.+ +|+.+.+++||.+++|++..|.+....
T Consensus        26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i-~~~~~~l~~g~~~~I~p~~~H~~~~~~   80 (290)
T PRK13501         26 YPQETFVEHTHQFCEIVIVWRGNGLHVL-NDHPYRITCGDVFYIQAADHHSYESVH   80 (290)
T ss_pred             CCCCCCccccccceeEEEEecCceEEEE-CCeeeeecCCeEEEEcCCCcccccccC
Confidence            3444456788999999999999999999 999999999999999999999998633

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.82  E-value=9.1e-05  Score=62.63  Aligned_cols=54  Identities=17%  Similarity=0.281  Sum_probs=48.0

Q ss_pred             cCCcccCcceeeccceEEEEEEceEEEEe--CC--EEEEccCCcEEEeCCCCceeEEeC
Q 025000          187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      -||....+| .|..+|-+|+|+|...+.+  +|  +...+++||++++|+|++|+....
T Consensus        42 Gpn~r~d~H-~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~   99 (177)
T PRK13264         42 GPNARTDFH-YDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE   99 (177)
T ss_pred             cCCcccccc-cCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC
Confidence            588888884 5778899999999999888  77  699999999999999999999774

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=97.78  E-value=0.00026  Score=64.82  Aligned_cols=57  Identities=18%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCce
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H  236 (259)
                      .+|.++++++......   ....-..++++++|++.+..++...++++|+.+|+++++..
T Consensus       233 ~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~  289 (302)
T TIGR00218       233 EYFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGP  289 (302)
T ss_pred             CCeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEccCCcc
Confidence            4677778887654221   12334578999999999999999999999999999999853

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.00056  Score=63.47  Aligned_cols=137  Identities=20%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             EEEeCCcEEEeCCCCcEEEEeCCeEE-EE-----EEEEeccccCCCCccee-----ecc--CC--CCCCcccC---CceE
Q 025000          104 SKLMVDSYTYLPPNFAHSLRAEGSAT-LV-----VFERRYASLENHITEQI-----VGS--TD--KQPLLETP---GEVF  165 (259)
Q Consensus       104 ~~L~~Gd~i~~p~~~~H~~~N~~~a~-~l-----~v~~~y~p~~g~~p~~~-----v~~--~~--di~~~~~~---g~~~  165 (259)
                      ..|+||+.+|.-|+.+|.|-. +++- ..     +|+.      |..|...     +..  ..  +..+..+.   +.. 
T Consensus       250 ~~L~PGEA~yL~AnepHAYls-GdcvECMA~SDNvIRA------GlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~~~~-  321 (411)
T KOG2757|consen  250 VRLNPGEAIYLEANEPHAYLS-GDCVECMACSDNVIRA------GLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSRLDG-  321 (411)
T ss_pred             eecCCCceeeecCCCcceeec-CceeEEecccCceeec------cCCCccccHHHHHhHhcccccccccccCCccCCCC-
Confidence            589999999999999999985 2221 11     1221      2222221     111  11  11111111   111 


Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      .....+|.  -.+|.+...++.+|.+.-. ..-.-.-++.|++|+|++..+ +..+.|++||++|++++.+=.+..+.+-
T Consensus       322 ~~~~Y~Pp--i~eF~v~~~~v~~g~~~~~-~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~  398 (411)
T KOG2757|consen  322 YVLLYDPP--IEEFAVLETKVPTGESYKF-PGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDP  398 (411)
T ss_pred             ceeEeCCC--CcceeEEEeecCCCceEEe-ecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence            22233443  3467777888888766333 333344779999999999999 9999999999999999998877766544


Q ss_pred             cEEEEEE
Q 025000          245 RTRYLLY  251 (259)
Q Consensus       245 ~~~fi~~  251 (259)
                      =..|.++
T Consensus       399 ~~~yrAf  405 (411)
T KOG2757|consen  399 FLGYRAF  405 (411)
T ss_pred             eeeeecc
Confidence            3334333

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.78  E-value=0.00018  Score=59.02  Aligned_cols=74  Identities=22%  Similarity=0.369  Sum_probs=46.4

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      .|.++.+ =.|+.+..-|...+|||+|-++|.+.+.+ .+|  +...+++||.++.|++++|+-+-...+.-|++++.
T Consensus        33 ~f~VmvV-GGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLViEr~  109 (151)
T PF06052_consen   33 DFIVMVV-GGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLVIERK  109 (151)
T ss_dssp             SEEEEEE-ESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE-
T ss_pred             CeEEEEE-cCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEEEEec
Confidence            4443333 34666666677889999999999998887 345  45799999999999999999776455667777665

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.77  E-value=7.4e-05  Score=66.92  Aligned_cols=62  Identities=21%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             CCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          188 PGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       188 PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      -|..++. |.|. +-+.+|+++|++.+.+||+.+.+++||+++++|++.|.+...++.....|+
T Consensus        32 ~~~~~~~-H~H~~~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~   94 (287)
T TIGR02297        32 FGRNMPV-HFHDRYYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT   94 (287)
T ss_pred             cCCCCCC-cccccceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence            3455665 5676 579999999999999999999999999999999999999877665544444

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=97.77  E-value=0.00015  Score=57.41  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT  129 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~  129 (259)
                      .++..+-+-.||.-. . .-+..||+++|+|+++++-.+||...++|||+++||+|..=.|+-.+++|
T Consensus        44 ~~~~GiWe~TpG~~r-~-~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Etvr  109 (116)
T COG3450          44 QVETGIWECTPGKFR-V-TYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVR  109 (116)
T ss_pred             CeeEeEEEecCccce-E-EcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeE
Confidence            444555555566322 1 22458999999999999986688999999999999999999998744444

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=97.74  E-value=0.0011  Score=63.01  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=74.1

Q ss_pred             EEEEeCCcEEEeCCCCcEEEEeCCeEEEEE-EEEeccccCCCCccee-------eccCCCCCCccc-----CCceEEEEE
Q 025000          103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVV-FERRYASLENHITEQI-------VGSTDKQPLLET-----PGEVFQLRK  169 (259)
Q Consensus       103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~-v~~~y~p~~g~~p~~~-------v~~~~di~~~~~-----~g~~~~~~~  169 (259)
                      ...|++||.+|+|+|.+|.|-.-.-+++.- ..-.|+  .|..|..+       +.+.+..+....     ..+. ....
T Consensus       238 ~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~R--aGlT~K~idv~~ll~~l~f~~~~~~~~~~~~~~~~~-~~~~  314 (389)
T PRK15131        238 VVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR--AGLTPKYIDIPELVANVKFEAKPANQLLTQPVKQGA-ELDF  314 (389)
T ss_pred             EEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEe--cCCCCCcccHHHHHhhcCCCCCCchhccccccccCC-eEEE
Confidence            468999999999999999987521222221 011111  22222211       111111111110     1111 1112


Q ss_pred             eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          170 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       170 l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      +.|.+   +|.+.+.++.++... .  ...-..+++|++|++.+..+|+...+++|+.+|++++...-.. .|+.
T Consensus       315 ~~p~~---~F~~~~~~l~~~~~~-~--~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~-~g~~  382 (389)
T PRK15131        315 PIPVD---DFAFSLHDLSDQPTT-L--SQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV-SGHG  382 (389)
T ss_pred             CCCCC---CcEEEEEEECCceEE-e--cCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE-eccc
Confidence            22322   466667777654211 1  1123378999999999999999999999999999998765433 4543

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00073  Score=62.05  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE----eccccCCCCccee-ec------cCCCCCCcccC----CceEE
Q 025000          102 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER----RYASLENHITEQI-VG------STDKQPLLETP----GEVFQ  166 (259)
Q Consensus       102 e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~----~y~p~~g~~p~~~-v~------~~~di~~~~~~----g~~~~  166 (259)
                      ....|+|||++|+|||++|.+-.-   .++=+++    .|+...  -|+.. ++      ....++.....    ..+..
T Consensus       158 n~v~lkpGe~~fl~Agt~HA~~~G---~~lEvmqnSDntyR~yd--~~r~~d~~~lr~l~~~k~~~~~~~~~~~~~~~~~  232 (312)
T COG1482         158 NRVKLKPGEAFFLPAGTPHAYLKG---LVLEVMQNSDNTYRVYD--TDRYDDIGELRELHLFKAKDVITLPTQPRKQGAE  232 (312)
T ss_pred             cEEecCCCCEEEecCCCceeeccc---eEEEEEecCccEEEccc--ccccccchhHHhhhhccccchhhcCCcccccCce
Confidence            357899999999999999998741   1221111    111111  01111 11      11111111111    11222


Q ss_pred             EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc-eeEEe
Q 025000          167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP-QWYAA  240 (259)
Q Consensus       167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~-H~~~n  240 (259)
                      ...+.|.+   +|.+.++.+..=....   ++....+++|++|+|+++-+|+.+++++|+.+|++++.. =-++.
T Consensus       233 ~~~~v~~~---~F~l~~~~i~~~~~~~---~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g  301 (312)
T COG1482         233 LTYPVPNE---DFALYKWDISGTAEFI---KQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEG  301 (312)
T ss_pred             EEEecccc---ceEEEEEeccChhhhc---cCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence            33344432   4566666665412221   222558999999999999999999999999999999944 33443

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.69  E-value=0.00019  Score=65.79  Aligned_cols=54  Identities=15%  Similarity=0.183  Sum_probs=47.4

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      |....+.|.|+.-|++||++|++.+.+ +|+.+.+++||.++++++..|.+....
T Consensus        57 ~~~~~~~H~H~~~el~~v~~G~g~~~v-~~~~~~l~~Gdl~~I~~~~~H~~~~~~  110 (312)
T PRK13500         57 PQDVFAEHTHDFCELVIVWRGNGLHVL-NDRPYRITRGDLFYIHADDKHSYASVN  110 (312)
T ss_pred             CCCCCCccccceEEEEEEEcCeEEEEE-CCEEEeecCCeEEEECCCCeecccccC
Confidence            333346778899999999999999999 999999999999999999999998633

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.63  E-value=0.00025  Score=63.44  Aligned_cols=55  Identities=13%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      -|....+.|.|+.-+++||++|++++++ +|+++.+++||.+++|++..|.+...+
T Consensus        26 ~~~~~~~~H~h~~~~l~~v~~G~~~~~i-~~~~~~l~~g~l~li~~~~~H~~~~~~   80 (282)
T PRK13502         26 YPQDVFAEHTHEFCELVMVWRGNGLHVL-NERPYRITRGDLFYIRAEDKHSYTSVN   80 (282)
T ss_pred             CCCCCCCccccceEEEEEEecCcEEEEE-CCEEEeecCCcEEEECCCCcccccccC
Confidence            3444346677889999999999999999 999999999999999999999987633

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.63  E-value=0.00022  Score=65.10  Aligned_cols=58  Identities=10%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT  129 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~  129 (259)
                      +|....+.|-|..=|++||++|++.+.+ +|+++.|.+||.++++++.+|.+...+.++
T Consensus        34 ~~~~m~~~HwH~e~Ei~yv~~G~~~~~i-~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         34 PPHIMPTSHWHGQVEVNVPFDGDVEYLI-NNEKVQINQGHITLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             CCCCCCCCCccccEEEEEecCCcEEEEE-CCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence            3444456688899999999999999999 999999999999999999999987533343

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.58  E-value=0.00036  Score=50.70  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=42.7

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCcee
Q 025000          179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~  237 (259)
                      +..-+..-.||... .  .-...|..|||+|+..+++ +|+.+.++|||++++|+|..--
T Consensus         7 ~~~g~w~~~pg~~~-~--~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~   63 (74)
T PF05899_consen    7 FSAGVWECTPGKFP-W--PYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGT   63 (74)
T ss_dssp             EEEEEEEEECEEEE-E--EESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEE
T ss_pred             EEEEEEEECCceeE-e--eCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEE
Confidence            44556667787632 2  2333688999999999999 8999999999999999997533

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.55  E-value=0.00015  Score=65.80  Aligned_cols=67  Identities=19%  Similarity=0.315  Sum_probs=60.5

Q ss_pred             EEEEecCCcccCcceeeccceEEEEEEceEEEE-eCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          182 HIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       182 ~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~-~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      .+--+.||..-|- |.|.+.-..||.||+|.|+ +||+..+.++||||.+|.+..|.--|.|+||+.++
T Consensus        95 glQlilPGEvAps-HrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~iWl  162 (351)
T COG3435          95 GLQLILPGEVAPS-HRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHGNEGTEPCIWL  162 (351)
T ss_pred             hhheecCcccCCc-ccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCCCCCCCceEEE
Confidence            3455789999886 8999999999999999775 79999999999999999999999999999999886

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.46  E-value=0.00021  Score=63.60  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             CcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC
Q 025000           74 ARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE  125 (259)
Q Consensus        74 ~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~  125 (259)
                      ...+.|.|+.-|++||++|.+++.+ +++.+.+++||.+++|++..|.+.+.
T Consensus        26 ~~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         26 AAFPEHHHDFHEIVIVEHGTGIHVF-NGQPYTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             ccccccccCceeEEEEecCceeeEe-cCCcccccCCcEEEECCCccchhhhc
Confidence            3446678999999999999999999 99999999999999999999998863

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.45  E-value=0.00022  Score=59.49  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=35.9

Q ss_pred             CCCCCCceEEEEEEECEEEEEE--cCCcE--EEEeCCcEEEeCCCCcEEEEe
Q 025000           77 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        77 ~~h~~~~Eef~yVl~G~l~v~v--~~ge~--~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      ..|.|..||+-|+++|++-..+  .+++.  ..+++||.+.+|+|+.|+|.-
T Consensus        86 ~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~  137 (157)
T PF03079_consen   86 EEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTL  137 (157)
T ss_dssp             S-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEE
T ss_pred             eeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEc
Confidence            3567889999999999998877  33443  479999999999999999985

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PLN02288 mannose-6-phosphate isomerase

Probab=97.41  E-value=0.0013  Score=62.58  Aligned_cols=128  Identities=17%  Similarity=0.174  Sum_probs=72.4

Q ss_pred             EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE-EEeccccCCCCccee-----ec--cCCCCCCcccCCceE--EEEEeeC
Q 025000          103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-----VG--STDKQPLLETPGEVF--QLRKLLP  172 (259)
Q Consensus       103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v-~~~y~p~~g~~p~~~-----v~--~~~di~~~~~~g~~~--~~~~l~p  172 (259)
                      ...|+||+.+|+|||.+|.|-.-.-.++.-- --..+  .|..|..+     ..  +....+.........  ..+...|
T Consensus       252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVlR--aGLTpK~~Dv~~L~~~l~f~~~~~~~~~~~~~~~~~~~y~~  329 (394)
T PLN02288        252 YVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVR--AGLTPKFRDVQTLCSMLTYKQGFPEILTGVPVDPYTTRYLP  329 (394)
T ss_pred             eEecCCCCEEEecCCCCceecCCCeEEeeecCCceee--ecCCCccccHHHHHhhccCccCCcccccccccCCCceEECC
Confidence            4689999999999999999985222233210 00001  23222211     11  111111111110000  0112222


Q ss_pred             CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE--EEccCCcEEEeCCCCc
Q 025000          173 QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVP  235 (259)
Q Consensus       173 ~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~--~~v~~GD~i~~~~~~~  235 (259)
                      .  -.+|.+.++++.+|..... ....-..+++|++|++.+..++..  ..+++|+++|++++..
T Consensus       330 P--~~eF~v~~~~l~~~~~~~~-~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        330 P--FDEFEVDHCDVPPGASVVF-PAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             C--CcceEEEEEEeCCCCeEee-cCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCc
Confidence            2  3468888899988864221 112334789999999999887776  6699999999998754

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.36  E-value=0.0006  Score=61.03  Aligned_cols=49  Identities=16%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             cCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           75 RSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        75 ~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      ..+.|.|+ .-+++|+++|++.+.+ +|+.+.+++||.+++|++..|.+..
T Consensus        35 ~~~~H~H~~~~~l~~~~~G~~~~~~-~~~~~~l~~g~~~ii~~~~~H~~~~   84 (287)
T TIGR02297        35 NMPVHFHDRYYQLHYLTEGSIALQL-DEHEYSEYAPCFFLTPPSVPHGFVT   84 (287)
T ss_pred             CCCCcccccceeEEEEeeCceEEEE-CCEEEEecCCeEEEeCCCCcccccc
Confidence            34667787 6899999999999999 9999999999999999999999986

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.33  E-value=0.00039  Score=58.14  Aligned_cols=49  Identities=16%  Similarity=0.449  Sum_probs=41.4

Q ss_pred             ceeeccceEEEEEEceEEEEeCC---E--EEEccCCcEEEeCCCCceeEEeCCC
Q 025000          195 KEVHYNQHGLLLLEGQGIYRLGD---S--WYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       195 ~~~H~~eh~~~il~G~g~~~~~g---~--~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      -|+|..+|+-|+|+|.|+..+-+   +  +..+.+||.|-+|||..|||.-+-+
T Consensus        90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~  143 (181)
T COG1791          90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES  143 (181)
T ss_pred             HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence            47889999999999999987743   3  4677899999999999999986543

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=97.23  E-value=0.0017  Score=50.22  Aligned_cols=71  Identities=23%  Similarity=0.298  Sum_probs=51.8

Q ss_pred             EEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC-CeEEEEEEEEeccccC
Q 025000           66 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFERRYASLE  141 (259)
Q Consensus        66 ~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~-~~a~~l~v~~~y~p~~  141 (259)
                      +.+.++||+....+ ..+.+-++||++|+++  + +++...+.+|+.+++..+..-.+++. +.++++++.  .+|+.
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~--v-~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~--GePl~   74 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVE--V-GGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLG--GEPLN   74 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEE--E-TTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEE--E----
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEE--E-CCCcceECCCcEEEECCCceEEEEECCCCcEEEEEE--ccCCC
Confidence            46788888776543 4578999999999965  6 67768999999999998888889985 899999985  34554

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.20  E-value=0.0017  Score=58.04  Aligned_cols=96  Identities=18%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             cCCCCCCcccC---C-ceEEEEEee--CCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE---E
Q 025000          151 STDKQPLLETP---G-EVFQLRKLL--PQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW---Y  220 (259)
Q Consensus       151 ~~~di~~~~~~---g-~~~~~~~l~--p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~---~  220 (259)
                      ..+|+.+.+.+   | .+...+.|.  +++.+ +.+   ++.|.+|-..|. |.|...+..+||+|.  +..+|..   .
T Consensus         4 ~~~d~~w~~~~p~~~~~~~~~~~L~gd~~~~g~~~~---~vkf~~g~~~pp-h~H~~~~~~~Vi~G~--~~~~~~~a~~~   77 (251)
T PF14499_consen    4 HADDVKWGPLNPARGDKGPGAAVLWGDPTKDGPSGM---RVKFPAGFSSPP-HIHNADYRGTVISGE--LHNGDPKAAAM   77 (251)
T ss_dssp             GS--EEEE--TTS-TTS--EEEEEEEE--TTS-EEE---EEEE-TT-EE---BEESS-EEEEEEESE--EEETTEE----
T ss_pred             chhhccccccCCCCCCCCcceeeeecCcccCCcceE---EEEcCCCccCCC-cceeeeEEEEEEEeE--EEcCCCcccce
Confidence            45666666542   3 344566665  54444 333   567888988886 788888999999996  4456654   4


Q ss_pred             EccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          221 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       221 ~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      .+.+|++.+.|.|..|.-.+.|++.+.|+-+-
T Consensus        78 ~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g  109 (251)
T PF14499_consen   78 WLPAGSYWFQPAGEPHITAAEGETNLLFIEIG  109 (251)
T ss_dssp             -E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S
T ss_pred             ecCCCceEeccCCCceeeeccCccEEEEEEeC
Confidence            59999999999999999999999999998543

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.20  E-value=0.00065  Score=54.96  Aligned_cols=49  Identities=29%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             CcccCcceeeccc-eEEEEEEceEEEEeCC---EEEEccCCcEEEeCCCCcee
Q 025000          189 GDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       189 G~~~~~~~~H~~e-h~~~il~G~g~~~~~g---~~~~v~~GD~i~~~~~~~H~  237 (259)
                      |+-.++||-|... |.+-+|+|++.+.++|   ...+|+.||++.+|.|+.|.
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~  104 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC  104 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc
Confidence            6777788888777 4578899999999985   78999999999999999985

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.16  E-value=0.0014  Score=52.87  Aligned_cols=70  Identities=17%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             ecCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEEeCCc-EEEeCCCCcEEEEe-CCeEEEEEE-EEeccc
Q 025000           70 MQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKLMVDS-YTYLPPNFAHSLRA-EGSATLVVF-ERRYAS  139 (259)
Q Consensus        70 l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd-~i~~p~~~~H~~~N-~~~a~~l~v-~~~y~p  139 (259)
                      .++|..-+.| ++..+++++|++|++++.+.++   +++.|...+ .+++||+..|.+.| ...+.+|++ ...|.+
T Consensus        40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~as~~yd~  116 (131)
T PF05523_consen   40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLASEPYDE  116 (131)
T ss_dssp             --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEESS---G
T ss_pred             CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEcCCCCCh
Confidence            3444334667 4678999999999999998222   567887775 89999999999998 444555554 444554

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>COG1741 Pirin-related protein [General function prediction only]

Probab=97.13  E-value=0.07  Score=48.48  Aligned_cols=174  Identities=13%  Similarity=0.078  Sum_probs=103.3

Q ss_pred             EEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEeC--C--eEEE--EEEEEecc
Q 025000           68 ANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRAE--G--SATL--VVFERRYA  138 (259)
Q Consensus        68 ~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N~--~--~a~~--l~v~~~y~  138 (259)
                      ..+.||..-++| +.+-|.+-||++|+++=.--.|..-.++|||.-..-||  +.|+=.|.  +  +.+.  +|+.-+..
T Consensus        49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~  128 (276)
T COG1741          49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAA  128 (276)
T ss_pred             ccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchh
Confidence            457888766777 45788888999999987753356679999999999885  56665563  2  2222  35543322


Q ss_pred             ccCCCCcceeecc-CCCCCCcccCCceEEEEEeeCC-C-------CCcceEEEEEEecCCcccCcceeeccceEEEEEEc
Q 025000          139 SLENHITEQIVGS-TDKQPLLETPGEVFQLRKLLPQ-A-------VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEG  209 (259)
Q Consensus       139 p~~g~~p~~~v~~-~~di~~~~~~g~~~~~~~l~p~-~-------~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G  209 (259)
                      . +..+|..-... .+++|....   ++..+.+.-. .       ... ..+-.+.+++|+.+..+ --+.+=.+|+++|
T Consensus       129 ~-k~~~P~yq~~~~~~~~p~~~~---g~~~rvi~G~~~g~~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G  202 (276)
T COG1741         129 D-KMIAPRYQHLAFPDEIPRVEL---GLTARVIAGRDGGLSSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEG  202 (276)
T ss_pred             h-ccCCcccccccCcccCceeec---ceEEEEeccccCCcccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEe
Confidence            2 22234443333 334544443   2344433311 1       112 44556778888887764 3344455788888


Q ss_pred             eEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          210 QGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       210 ~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                        .+.+||+.-  ..+|-+.+-.+..=.+...++.++++|++
T Consensus       203 --~l~v~g~~~--~~~~~l~i~~g~~i~l~a~~~~~a~vLL~  240 (276)
T COG1741         203 --TLEVNGQHE--TDGDGLAILDGDEITLVADSPAGARVLLL  240 (276)
T ss_pred             --EEEEccccc--ccccceEEecCCeEEEEecCCCCeEEEEE
Confidence              667777654  34444444444433566666777888876

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=97.10  E-value=0.052  Score=46.29  Aligned_cols=158  Identities=15%  Similarity=0.159  Sum_probs=87.6

Q ss_pred             cceEEEEecCCCC--CcEEEE--EEEecCCCcCCCCCCCceEEEEEEECE-EEEEEcCCc-E-EEEeCCcEEEeCCCCcE
Q 025000           48 NTLGAYLITPAMG--SHFVMY--LANMQENARSALPPHDVERFIFVVQGS-AMLTNASGV-S-SKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        48 ~~~~~~l~sp~~g--~~f~~~--~~~l~Pg~~~~~h~~~~Eef~yVl~G~-l~v~v~~ge-~-~~L~~Gd~i~~p~~~~H  120 (259)
                      |.+..+.+.|..+  ++|...  ..+++..+.-+ ...+.+..+.+|+|+ ++++. +++ . ..|.+++.+.|+.+.+-
T Consensus        16 G~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS-~FpG~~R~l~~L~G~gl~L~~-~~~~~~~~l~p~~~~~F~G~~~v   93 (184)
T PF05962_consen   16 GTTREIAIYPEGSAKRDFDWRISIATVEADGPFS-DFPGYDRILTLLEGNGLRLTH-DGQQEHTLLQPFQPFAFDGDWPV   93 (184)
T ss_dssp             EEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE----TT-EEEEEEEESS-EEEEE-TTCSE-EEE-BT--EEEETTS-E
T ss_pred             eEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCC-CCCCCcEEEEEEeCCcEEEec-CCCcceeccCCCCcEEcCCCCeE
Confidence            3355556667543  355544  34444443311 247999999999999 99999 777 4 45999999999998887


Q ss_pred             EEEe-CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeec
Q 025000          121 SLRA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY  199 (259)
Q Consensus       121 ~~~N-~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~  199 (259)
                      .-+. +++++-+-++.+  +  +.                   -....+.+....   ..   .+..          ...
T Consensus        94 ~~~l~~G~~~dfNlM~r--~--~~-------------------~~~~~~~~~~~~---~~---~~~~----------~~~  134 (184)
T PF05962_consen   94 TSELLDGPVRDFNLMTR--R--GR-------------------WRARVRVLNQDG---TL---ELKL----------PAA  134 (184)
T ss_dssp             EEEESSS-EEEEEEEE---T--TT-------------------EEEEEEEEEEEC---EE---EE-E----------E--
T ss_pred             EEEECCCCEEEEEEEec--C--Cc-------------------ceEEEEEEeCCC---cE---EEee----------CCC
Confidence            7775 788888877643  2  10                   011222221000   00   0000          111


Q ss_pred             cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEE
Q 025000          200 NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY  248 (259)
Q Consensus       200 ~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f  248 (259)
                      ..-.+|+++|+..+..+++.+.+.+||.+++.+  ++.+.-.++..+-+
T Consensus       135 ~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~  181 (184)
T PF05962_consen  135 STVLVYVLEGAWSITEGGNCISLSAGDLLLIDD--EEDLPLTGDGQLLW  181 (184)
T ss_dssp             SEEEEEESSS-EEECCCEEEEEE-TT-EEEEES--EECEEEEEECCEEE
T ss_pred             CEEEEEEeeCcEEEecCCCceEcCCCCEEEEeC--CCceEecCCeeEEE
Confidence            224489999998888888999999999999998  55554445444433

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.00  E-value=0.0034  Score=52.62  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             CCCCCceEEEEEEECEEEEEE--cCCcEE--EEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCCCcc
Q 025000           78 LPPHDVERFIFVVQGSAMLTN--ASGVSS--KLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE  146 (259)
Q Consensus        78 ~h~~~~Eef~yVl~G~l~v~v--~~ge~~--~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~~p~  146 (259)
                      .|.|.-+|+-|+++|++-..+  .+|+.+  .+.+||.+.+|+|+.|+|.-.+. .-+...+-|...+|++|.
T Consensus        90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~-~~f~AvRlF~~~~gWVa~  161 (181)
T COG1791          90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES-PNFKAVRLFTEPEGWVAI  161 (181)
T ss_pred             HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC-CcEEEEEEeeCCCCceee
Confidence            467899999999999998877  344554  67899999999999999985332 222333445555776443

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=96.92  E-value=0.0045  Score=49.97  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC----EEEEccCCc-EEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGD-VLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g----~~~~v~~GD-~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      .+.+-+...++|..=+.|-|+..++.+++++|+..+.+++    +.+.+...+ .+++||+.+|+++|.++. +.-|++.
T Consensus        32 ~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a  110 (131)
T PF05523_consen   32 KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA  110 (131)
T ss_dssp             -EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred             cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence            4555566667777677777778889999999999999876    566666654 899999999999999877 7777765


Q ss_pred             e
Q 025000          253 D  253 (259)
Q Consensus       253 ~  253 (259)
                      +
T Consensus       111 s  111 (131)
T PF05523_consen  111 S  111 (131)
T ss_dssp             S
T ss_pred             C
Confidence            4

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.81  E-value=0.0035  Score=56.32  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=38.6

Q ss_pred             eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      ...|+++|+|.+.+||+.+.+++||+++++|+.+|.+....+
T Consensus        51 ~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         51 ILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             EEEEEEeccEEEecCCeeEecCCCCEEEECCCCceeeccCCC
Confidence            567899999999999999999999999999999999877654

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=96.66  E-value=0.029  Score=47.84  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             EEEEEEEecCCCcCC------CCC-------CCceEEEEEEECEEEEEE--cCC----cE--EEEeCCcEEEeCCCCcEE
Q 025000           63 FVMYLANMQENARSA------LPP-------HDVERFIFVVQGSAMLTN--ASG----VS--SKLMVDSYTYLPPNFAHS  121 (259)
Q Consensus        63 f~~~~~~l~Pg~~~~------~h~-------~~~Eef~yVl~G~l~v~v--~~g----e~--~~L~~Gd~i~~p~~~~H~  121 (259)
                      +-.-+..+.||.-..      -|-       -..-|+.+||+|++.+-+  .++    +.  ..+++||.+++|++-.|+
T Consensus        50 L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~  129 (182)
T PF06560_consen   50 LRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR  129 (182)
T ss_dssp             EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred             EEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence            555677777775331      231       236899999999998877  234    33  589999999999999999


Q ss_pred             EEeCC
Q 025000          122 LRAEG  126 (259)
Q Consensus       122 ~~N~~  126 (259)
                      ..|.+
T Consensus       130 tIN~g  134 (182)
T PF06560_consen  130 TINTG  134 (182)
T ss_dssp             EEE-S
T ss_pred             EEECC
Confidence            99944

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=96.65  E-value=0.011  Score=49.91  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=45.7

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEE---cCC---------cEEEEeCCcEEEeCCCCcEEEEe
Q 025000           60 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTN---ASG---------VSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v---~~g---------e~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      ...|+++++...||..++.|-|+ ..=++.|++|+++-+.   .++         +...+..|....++++.-|++.|
T Consensus        72 ~~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n  149 (175)
T PF05995_consen   72 DERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVEN  149 (175)
T ss_dssp             GCT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEE
T ss_pred             CCCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEecc
Confidence            35799999999999999999665 6778899999987654   222         23346677777789999999998

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.52  E-value=0.015  Score=52.19  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      ..+-.+.++++|++++.+ +++.+.+++||.+++|++.+|.+..
T Consensus        47 ~~~~~i~~~~~G~~~~~~-~~~~~~~~~g~~i~i~p~~~h~~~~   89 (290)
T PRK10572         47 MKGYILNLTIRGQGVIFN-GGRAFVCRPGDLLLFPPGEIHHYGR   89 (290)
T ss_pred             ccceEEEEEEeccEEEec-CCeeEecCCCCEEEECCCCceeecc
Confidence            345678899999999999 9999999999999999999999875

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=96.38  E-value=0.0096  Score=48.30  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             CCceEEEEEEECEEEEEEc--CCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccc
Q 025000           81 HDVERFIFVVQGSAMLTNA--SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS  139 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~--~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p  139 (259)
                      .+..|.+.|++|+..+.++  +|+...+++||.+.+|+|+-|+ ++...+-|.++. .|.|
T Consensus        62 s~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~-rl~sS~DF~VvG-aYp~  120 (163)
T COG4297          62 SGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC-RLHSSADFQVVG-AYPP  120 (163)
T ss_pred             CCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc-cccCCCCeEEEc-ccCC
Confidence            4678999999999999992  4678999999999999999996 344556676653 4555

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.34  E-value=0.05  Score=52.07  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=43.8

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ..++++++||-+|++.+.. +=-...+++||+++||.|+.+++.-++++|.++++
T Consensus       143 NaDGD~Li~~q~G~l~l~T-e~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E  196 (424)
T PF04209_consen  143 NADGDELIFPQQGSLRLET-EFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE  196 (424)
T ss_dssp             ESSEEEEEEEEES-EEEEE-TTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred             cCCCCEEEEEEECCEEEEe-cCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence            4789999999999999998 75678999999999999999998877999999987

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=96.33  E-value=0.013  Score=45.14  Aligned_cols=66  Identities=20%  Similarity=0.234  Sum_probs=48.3

Q ss_pred             EEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          183 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       183 ~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      -++++||+.+-..-...++..+|+++|.+  .++|+..++.+|+.+++.++..=.+.+.+ ++++||++
T Consensus         3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~--~v~~~~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll   68 (104)
T PF05726_consen    3 DIKLEPGASFTLPLPPGHNAFIYVLEGSV--EVGGEEDPLEAGQLVVLEDGDEIELTAGE-EGARFLLL   68 (104)
T ss_dssp             EEEE-TT-EEEEEEETT-EEEEEEEESEE--EETTTTEEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred             EEEECCCCEEEeecCCCCEEEEEEEECcE--EECCCcceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence            46789999976543456778899999995  55777799999999999977777777664 77777765

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF12852 Cupin_6: Cupin

Probab=96.31  E-value=0.026  Score=47.56  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=37.5

Q ss_pred             ceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEe
Q 025000           83 VERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        83 ~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      .-.|.+|++|++.+.+ ++  +...|++||.+++|.|.+|.+..
T Consensus        35 ~~~fh~V~~G~~~l~~-~~~~~~~~L~~GDivllp~g~~H~l~~   77 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRV-PGGGEPIRLEAGDIVLLPRGTAHVLSS   77 (186)
T ss_pred             ceEEEEEECCeEEEEE-cCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence            4789999999999998 55  78999999999999999999975

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=96.30  E-value=0.023  Score=44.33  Aligned_cols=61  Identities=20%  Similarity=0.085  Sum_probs=49.1

Q ss_pred             CcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCC--ceeEEeCCC-ccEEEE
Q 025000          189 GDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFV--PQWYAALGK-TRTRYL  249 (259)
Q Consensus       189 G~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~--~H~~~n~G~-e~~~fi  249 (259)
                      +.-++.|.|...|-.-|||+|+....+. |....+++||+-||.+|-  .|+=.|.++ ++++.|
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l  103 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL  103 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence            5566777888888888999999999987 677899999999998764  499999988 888776

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=96.21  E-value=0.035  Score=51.81  Aligned_cols=72  Identities=14%  Similarity=0.275  Sum_probs=59.3

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      -..|++..+.+++|.+.-.+.-++--++.|++|+..+.. + +....++.||.+|||++.+-.+...+++ ++.+
T Consensus       330 i~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~-~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~y  402 (411)
T KOG2757|consen  330 IEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKT-DTDSKILVNRGDVLFIPANHPIHLSSSSDP-FLGY  402 (411)
T ss_pred             CcceeEEEeecCCCceEEeecCCCceEEEEEecceEEec-CCCCceeeccCcEEEEcCCCCceeeccCcc-eeee
Confidence            458999999999977665555677889999999999998 7 8889999999999999999988874443 4443

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.15  E-value=0.01  Score=49.54  Aligned_cols=63  Identities=21%  Similarity=0.429  Sum_probs=49.1

Q ss_pred             EEEEEecCCcccCc---------ceeeccceEEEEEEceEEEEeC---CEE--EEccCCcEEEeCCCCceeEEeCCC
Q 025000          181 IHIMDFQPGDFLNV---------KEVHYNQHGLLLLEGQGIYRLG---DSW--YPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       181 ~~~~t~~PG~~~~~---------~~~H~~eh~~~il~G~g~~~~~---g~~--~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      |.++++-|+...-+         .|.|..||+=|||+|.|-+.+.   +.|  +.|++||.|++|+|.-|-|.-+-+
T Consensus        65 ~d~~~~~~e~~~nfdeKvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~  141 (179)
T KOG2107|consen   65 MDICTVCPETLPNFDEKVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS  141 (179)
T ss_pred             eeEEEEchhhcccHHHHHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence            44566666654333         5678899999999999988765   555  568999999999999999986644

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=95.99  E-value=0.036  Score=46.28  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=53.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-----eEEEEE-EceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQ-----HGLLLL-EGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~e-----h~~~il-~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      -..++...|.||+.|.. |.....     |.-++. .....++++|+.+..++|.++++.+-.+|+..|.|+++ +.+++
T Consensus        79 ~~~~~~s~l~pg~~I~p-H~d~~~~~lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~-Rv~L~  156 (163)
T PF05118_consen   79 LGRVRFSRLPPGTHIKP-HRDPTNLRLRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDED-RVVLI  156 (163)
T ss_dssp             CEEEEEEEEECTEEEEE-E-SS-TTEEEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS--EEEEE
T ss_pred             hhhEEEEEECCCCEECC-eeCCCCcceEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCCC-EEEEE
Confidence            34578888999999975 444432     444556 47899999999999999999999999999999999865 44444


Q ss_pred             eecCC
Q 025000          252 KDVNR  256 (259)
Q Consensus       252 k~~nr  256 (259)
                      =|+-|
T Consensus       157 vD~~h  161 (163)
T PF05118_consen  157 VDFWH  161 (163)
T ss_dssp             EEEE-
T ss_pred             EEeec
Confidence            55543

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=95.54  E-value=0.44  Score=41.51  Aligned_cols=178  Identities=18%  Similarity=0.234  Sum_probs=100.7

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEecc
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA  138 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~  138 (259)
                      .|.++.+ =.|+.+..-|...+||++|=++|.+.+.+ ..|  +...++.||++..|+.++|+-.-=....=|++++.=.
T Consensus        33 qlkVm~V-GGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~  111 (279)
T KOG3995|consen   33 QLKVMFV-GGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRL  111 (279)
T ss_pred             CeEEEEe-cCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccC
Confidence            4555554 24555566677889999999999998887 223  4578999999999999999743211111223322211


Q ss_pred             ccCCCCcceeeccCC--------------------------CCCCccc-CC-ce------EEEEEee---C---------
Q 025000          139 SLENHITEQIVGSTD--------------------------KQPLLET-PG-EV------FQLRKLL---P---------  172 (259)
Q Consensus       139 p~~g~~p~~~v~~~~--------------------------di~~~~~-~g-~~------~~~~~l~---p---------  172 (259)
                      -++-.--+..+++-.                          +.+.+.= ++ +.      ...+++.   |         
T Consensus       112 ~tE~D~iR~yvg~~~~vlfE~wfy~~Dlgtql~p~I~eF~~s~E~rTgkp~~~~~~C~~pf~~~t~~~~~P~s~~~~~~~  191 (279)
T KOG3995|consen  112 ETELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEEYRTGKPIPDQLLCEPPFPLSTRSIMEPMSLDAWLDS  191 (279)
T ss_pred             CCccceEEEEeccchhhHHHHHhhHHhhhhhhHHHHHHHhcchhhhcCCCCCCccccCCCccccccccccccchhHHHHH
Confidence            111001111122211                          1111100 00 00      0011110   1         


Q ss_pred             ---------CCC-CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          173 ---------QAV-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       173 ---------~~~-~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                               -.. +..+...++-+--|++-..  ....+=-++.++|..++..+|..+-+++...+.++++..-|..-.|
T Consensus       192 h~~e~~~gp~~~~g~~y~t~v~~~g~gs~~~~--~~~v~~~~w~~e~s~vv~~~g~~~~~~~~s~~~~~~~s~~~~~~~g  269 (279)
T KOG3995|consen  192 HHRELQAGPLSLFGDTYETQVIAYGQGSSEGL--RQNVDVWLWQLEGSSVVTMGGRRLSLAPDSLLVLAGTSYAWERTQG  269 (279)
T ss_pred             HHHHHhcCCeeeeCccceeeEEEeccccchhh--cCceEEEEEEecCceEEeecCeEEeeCCcceEEEcCcchhhhhccC
Confidence                     111 2234555666666665432  3333344788999999999999999999999999998766554444

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=95.51  E-value=0.1  Score=47.03  Aligned_cols=81  Identities=14%  Similarity=0.299  Sum_probs=61.0

Q ss_pred             EeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-EEEEccCC--------cEEEeCCCCceeE
Q 025000          169 KLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-SWYPVQAG--------DVLWMAPFVPQWY  238 (259)
Q Consensus       169 ~l~p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g-~~~~v~~G--------D~i~~~~~~~H~~  238 (259)
                      .+.|+..+ .-+.+..++|++|..... .....|=++.+|+|++.+..|| +++.+..-        |++|++.|..=-+
T Consensus        16 ~i~~~~~g~~~~~~~~l~L~~g~~~~~-~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i   94 (261)
T PF04962_consen   16 SITPENAGWMYMGFGVLRLEAGESLEF-ELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVI   94 (261)
T ss_dssp             ECTCCCCCCCCBECCCEEEECCHCCCC-CCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEE
T ss_pred             EECCCccCccccceEEEEecCCCEEec-cCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEE
Confidence            34465544 456788999999999876 5767778899999999999999 99999988        9999999999888


Q ss_pred             EeCCCccEEEEEEe
Q 025000          239 AALGKTRTRYLLYK  252 (259)
Q Consensus       239 ~n~G~e~~~fi~~k  252 (259)
                      .+..+  ++|.+.+
T Consensus        95 ~a~~~--ae~~~~s  106 (261)
T PF04962_consen   95 FASTD--AEFAVCS  106 (261)
T ss_dssp             EESST--EEEEEEE
T ss_pred             EEcCC--CEEEEEc
Confidence            87544  6665543

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PF12852 Cupin_6: Cupin

Probab=95.49  E-value=0.024  Score=47.76  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=36.5

Q ss_pred             eEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          202 HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       202 h~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      .-.+|++|++.+.++|  +...+++||+++++.|.+|.+....+
T Consensus        37 ~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   37 SFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             EEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            4468999999999876  89999999999999999999964433

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=95.45  E-value=0.13  Score=40.68  Aligned_cols=52  Identities=21%  Similarity=0.195  Sum_probs=40.2

Q ss_pred             EEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCc
Q 025000          181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~  235 (259)
                      ..+..=.||..   +-+-.+.|..+||+|+++|+-+ |+-++++|||.+++++|-.
T Consensus        47 ~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~   99 (116)
T COG3450          47 TGIWECTPGKF---RVTYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFK   99 (116)
T ss_pred             EeEEEecCccc---eEEcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCe
Confidence            34666668874   2233344778999999999865 6899999999999999954

>PLN02288 mannose-6-phosphate isomerase

Probab=95.40  E-value=0.047  Score=52.00  Aligned_cols=59  Identities=12%  Similarity=0.223  Sum_probs=46.5

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE--EEEeCCcEEEeCCCCc
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFA  119 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~--~~L~~Gd~i~~p~~~~  119 (259)
                      -..|.+..+++.++.........+-.+++|++|++++.. ++++  ..|++|+++|+|++..
T Consensus       331 ~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~-~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        331 FDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST-GSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             CcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec-CCccceEEEeceeEEEEeCCCc
Confidence            457999889998775433323566789999999999987 6666  6799999999999765

>PRK10579 hypothetical protein; Provisional

Probab=95.38  E-value=0.099  Score=39.77  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             EEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000           68 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus        68 ~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l  131 (259)
                      -.|.||.- +. .-...|..-|++|++++.+ .|  ++.+..+|+++.+|++....++....+..+
T Consensus        28 GVm~pGey-~F-~T~~~E~MeivsG~l~V~L-pg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y~   90 (94)
T PRK10579         28 GVMAEGEY-TF-STAEPEEMTVISGALNVLL-PGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSYL   90 (94)
T ss_pred             EEEeeeEE-EE-cCCCcEEEEEEeeEEEEEC-CCCcccEEeCCCCEEEECCCCeEEEEECcceeeE
Confidence            34557642 22 1235688899999999999 55  457999999999999999999976555444

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=95.36  E-value=0.048  Score=49.12  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=38.8

Q ss_pred             eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      ..+++++|++.+..+|..+.++|||+++++++.+|.+...++..
T Consensus        73 ~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~  116 (302)
T PRK09685         73 FTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSE  116 (302)
T ss_pred             EEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCCCce
Confidence            34577999999999999999999999999999999998766543

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=95.35  E-value=0.12  Score=39.34  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      +-.|.||.-. . .-...|..-|++|++++.+ .|  ++.+..+|+++-+|++....++...++..++
T Consensus        27 lGVm~pGeY~-F-~T~~~E~M~vvsG~l~V~l-pg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~C   91 (94)
T PF06865_consen   27 LGVMLPGEYT-F-GTSAPERMEVVSGELEVKL-PGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYLC   91 (94)
T ss_dssp             EEEE-SECEE-E-EESS-EEEEEEESEEEEEE-TT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEEE
T ss_pred             EEEEeeeEEE-E-cCCCCEEEEEEEeEEEEEc-CCCcccEEeCCCCeEEECCCCeEEEEECcceeeEE
Confidence            4456687522 1 1245788899999999999 44  4689999999999999999999866555443

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=95.27  E-value=0.038  Score=46.17  Aligned_cols=48  Identities=13%  Similarity=0.201  Sum_probs=40.5

Q ss_pred             CCCCCCceEEEEEEECEEEEEE--cCCcE--EEEeCCcEEEeCCCCcEEEEe
Q 025000           77 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        77 ~~h~~~~Eef~yVl~G~l~v~v--~~ge~--~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      +.|.|.-||+-|+++|..-..+  .++++  .-++.||.+.+|+|+-|+|.-
T Consensus        87 EEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt  138 (179)
T KOG2107|consen   87 EEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT  138 (179)
T ss_pred             HHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence            4567899999999999998877  23444  478999999999999999985

>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]

Probab=95.23  E-value=0.22  Score=43.99  Aligned_cols=117  Identities=14%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC-CcEEEEe---CCeEEEEEEEEeccccCCCCcceeeccCCCCCC
Q 025000           82 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQPL  157 (259)
Q Consensus        82 ~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~-~~H~~~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~  157 (259)
                      ..|--++=+-|..++++ ||++++|+..|.+|+-.| ..-.|..   ..+|+|.++..+   +.-.-|...+. .+|..+
T Consensus        75 RRElgiINIG~~G~i~v-~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sap---AH~s~ptk~~~-~~~a~p  149 (278)
T COG3717          75 RRELGIINIGGPGTITV-DGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAP---AHTSYPTKKVT-LAEAKP  149 (278)
T ss_pred             eeeeeEEeeCCCceEEE-CCEEEEeccccEEEEecCccceEEeccCCCCcceEEEeecc---ccccCCccccc-HHHcCc
Confidence            34444555677889999 999999999999999998 4445664   347889888533   33222433333 444444


Q ss_pred             cccC-----CceEEEEE-eeCCCCCc-ceEEEEEEecCCcc---cCcceeec-cceEEE
Q 025000          158 LETP-----GEVFQLRK-LLPQAVPF-DFNIHIMDFQPGDF---LNVKEVHY-NQHGLL  205 (259)
Q Consensus       158 ~~~~-----g~~~~~~~-l~p~~~~~-~~~~~~~t~~PG~~---~~~~~~H~-~eh~~~  205 (259)
                      ....     ..+ ++-+ +.|+-... ...|-...|+||.-   +|. |.|. -.|.|+
T Consensus       150 ~~lG~~~tSN~R-TI~kyihpd~~~scQL~mG~T~L~pgsvWNTMP~-H~HdRRmE~Yl  206 (278)
T COG3717         150 VTLGDDATSNRR-TINKYIHPDVLESCQLSMGLTMLAPGSVWNTMPC-HVHDRRMEVYL  206 (278)
T ss_pred             cccccccccccc-eeeeeeccchhhhhhhhhcceeecCCCccccCCc-cccccceeEEE
Confidence            4431     233 4444 44776665 47788889999985   675 4553 225543

>PLN02658 homogentisate 1,2-dioxygenase

Probab=95.19  E-value=0.15  Score=48.94  Aligned_cols=65  Identities=15%  Similarity=0.107  Sum_probs=53.5

Q ss_pred             cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000           71 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  136 (259)
Q Consensus        71 ~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~  136 (259)
                      .++.+....   ..++|+++++-+|.+.+.. +=-...+++||+++||.|+.+++.- ++++|.++++.-
T Consensus       132 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~  200 (435)
T PLN02658        132 VANKSMDDCAFCNADGDFLIVPQQGRLWIKT-ELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF  200 (435)
T ss_pred             eCCCCCccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence            466665332   4789999999999999987 5445789999999999999999984 779999988755

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=95.16  E-value=0.17  Score=45.52  Aligned_cols=49  Identities=14%  Similarity=0.207  Sum_probs=40.3

Q ss_pred             CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000           82 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus        82 ~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l  131 (259)
                      +.-.++++++|++.+.. +|+++.+.+||.+++|++.+|.+...+..+.+
T Consensus        70 ~~~~l~~~~~G~~~~~~-~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~~~  118 (302)
T PRK09685         70 AHFFTVFQLSGHAIIEQ-DDRQVQLAAGDITLIDASRPCSIYPQGLSEQI  118 (302)
T ss_pred             CcEEEEEEecceEEEEE-CCeEEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence            34456678999999999 99999999999999999999998753433433

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=95.11  E-value=0.067  Score=44.63  Aligned_cols=77  Identities=6%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             cEEEEEEEecCCCcCCCCCCC-----ceEEEEEE-ECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHD-----VERFIFVV-QGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  134 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~-----~Eef~yVl-~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~  134 (259)
                      ....+...+.||+...+|...     .-++-.+. ...+.+.+ +|+++..++|.+++|....+|...| ....|++++.
T Consensus        79 ~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v-~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v  157 (163)
T PF05118_consen   79 LGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV-GGETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV  157 (163)
T ss_dssp             CEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE-TTEEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred             hhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE-CCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence            345678889999888777422     22344445 36789999 9999999999999999999999999 4457887776


Q ss_pred             Eeccc
Q 025000          135 RRYAS  139 (259)
Q Consensus       135 ~~y~p  139 (259)
                      .-..|
T Consensus       158 D~~hP  162 (163)
T PF05118_consen  158 DFWHP  162 (163)
T ss_dssp             EEE-T
T ss_pred             EeecC
Confidence            54443

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=94.99  E-value=0.2  Score=45.92  Aligned_cols=69  Identities=16%  Similarity=0.288  Sum_probs=50.1

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      ...|.+.+.++...  ......++-.+++|++|++++.. ++++..|++|+++++|++...... .+.++++.
T Consensus       232 ~~~F~~~~~~~~~~--~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i-~g~~~~~~  300 (302)
T TIGR00218       232 TEYFSVYKWDISGK--AEFIQQQSALILSVLEGSGRIKS-GGKTLPLKKGESFFIPAHLGPFTI-EGECEAIV  300 (302)
T ss_pred             CCCeEEEEEEeCCc--eeeccCCCcEEEEEEcceEEEEE-CCEEEEEecccEEEEccCCccEEE-EeeEEEEE
Confidence            45788888887543  11123457788999999999998 899999999999999999854322 23445543

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=94.87  E-value=0.23  Score=45.78  Aligned_cols=64  Identities=16%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             CCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC-CcEEEEe
Q 025000           58 AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA  124 (259)
Q Consensus        58 ~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~-~~H~~~N  124 (259)
                      .....|...+..+..  ....-.+.+=.+++|++|++++.. +|++..|++|+++++|+. .+..+..
T Consensus       237 v~~~~F~l~~~~i~~--~~~~~~~~~~~il~v~eG~~~l~~-~~~~~~l~~G~s~~ipa~~~~~~i~g  301 (312)
T COG1482         237 VPNEDFALYKWDISG--TAEFIKQESFSILLVLEGEGTLIG-GGQTLKLKKGESFFIPANDGPYTIEG  301 (312)
T ss_pred             ccccceEEEEEeccC--hhhhccCCCcEEEEEEcCeEEEec-CCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence            345678888887764  111113457889999999999998 999999999999999999 5666654

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=94.77  E-value=0.13  Score=41.60  Aligned_cols=55  Identities=16%  Similarity=0.203  Sum_probs=46.5

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      .+.=-+.+.++|.+.++. +|++..+.+||.+.++++.++.+...+..+.+.+.-+
T Consensus        53 ~~~~~l~~~~~G~~~~~~-~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip  107 (172)
T PF14525_consen   53 DDHYLLVLPLSGSARIEQ-GGREVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIP  107 (172)
T ss_pred             CCEEEEEEEccCCEEEEE-CCEEEEEcCCeEEEEcCCCCEEEEECCCccEEEEEEC
Confidence            345667788999999999 9999999999999999999999998666677666544

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=94.75  E-value=0.22  Score=47.66  Aligned_cols=65  Identities=15%  Similarity=0.042  Sum_probs=53.1

Q ss_pred             cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           71 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        71 ~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      .++.+....   ..++|+++++-+|.+.+.. +=-...+++||++.||.|+.+++.-.+++|.++++.-
T Consensus       133 ~~~~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~  200 (429)
T TIGR01015       133 LCNASMENRAFYNADGDFLIVPQQGALLITT-EFGRLLVEPNEICVIPRGVRFRVTVLEPARGYICEVY  200 (429)
T ss_pred             eCCCCcccceeeccCCCEEEEEEeCcEEEEE-eccceEecCCCEEEecCccEEEEeeCCCceEEEEecc
Confidence            456665332   4789999999999999987 5445799999999999999999886688999887643

Missing in human disease alkaptonuria.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=94.70  E-value=0.23  Score=47.62  Aligned_cols=64  Identities=19%  Similarity=0.115  Sum_probs=52.5

Q ss_pred             cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEE
Q 025000           71 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER  135 (259)
Q Consensus        71 ~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~  135 (259)
                      .++.+....   ..++|+++++-+|++.+.. +=-...+++||+++||.|+.+++.- ++++|.++++.
T Consensus       139 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~  206 (438)
T PRK05341        139 AANRSMQDRYFYNADGELLIVPQQGRLRLAT-ELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCEN  206 (438)
T ss_pred             eCCCCcccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEe
Confidence            456555322   4789999999999999987 5446799999999999999999985 77999988864

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=94.69  E-value=0.19  Score=47.85  Aligned_cols=60  Identities=17%  Similarity=0.300  Sum_probs=45.8

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR  123 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~  123 (259)
                      ..|.+....+.++ .... ...+-.+++|++|++++.. ++++..|++|+++++|++......
T Consensus       319 ~~F~~~~~~l~~~-~~~~-~~~~~~Illv~~G~~~i~~-~~~~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        319 DDFAFSLHDLSDQ-PTTL-SQQSAAILFCVEGEAVLWK-GEQQLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CCcEEEEEEECCc-eEEe-cCCCcEEEEEEcceEEEEe-CCeEEEECCCCEEEEeCCCccEEE
Confidence            4688888887653 1111 1245689999999999998 899999999999999998765433

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=93.90  E-value=0.13  Score=42.43  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             cCCcccCcceeeccceEEEEEEceEEEEe--CC--EEEEccCCcEEEeCCCCceeEEeCC
Q 025000          187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      -|.....| |-..-||-+|.++|...+.+  +|  +.+++++||+.++|+++||+=.-..
T Consensus        41 GPN~R~Dy-Hine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~   99 (151)
T PF06052_consen   41 GPNQRTDY-HINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPA   99 (151)
T ss_dssp             SSB--SSE-EE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred             CCCCCCcc-ccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence            45555555 44455688999999887654  44  6789999999999999999976543

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=93.34  E-value=0.22  Score=45.93  Aligned_cols=61  Identities=20%  Similarity=0.260  Sum_probs=39.6

Q ss_pred             ecCCcccCcceeeccceEEEEEEceEE--EEeC-----------------------CEEEEccCCcEEEeCCCCceeEEe
Q 025000          186 FQPGDFLNVKEVHYNQHGLLLLEGQGI--YRLG-----------------------DSWYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       186 ~~PG~~~~~~~~H~~eh~~~il~G~g~--~~~~-----------------------g~~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      +.|+++-+. --|...+..|||+..|.  -++-                       -....++|||++|+|+|+.|.-.+
T Consensus       120 ~tp~g~~g~-~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~  198 (319)
T PF08007_consen  120 LTPPGSQGF-GPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVT  198 (319)
T ss_dssp             EETSSBEES-ECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEE
T ss_pred             ecCCCCCCc-cCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCC
Confidence            457776666 56777788888887772  2211                       236889999999999999999999


Q ss_pred             CCCccEEE
Q 025000          241 LGKTRTRY  248 (259)
Q Consensus       241 ~G~e~~~f  248 (259)
                      .+ ..+.+
T Consensus       199 ~~-~S~hl  205 (319)
T PF08007_consen  199 TD-PSLHL  205 (319)
T ss_dssp             SS--EEEE
T ss_pred             CC-CceEE
Confidence            98 54444

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=93.05  E-value=0.11  Score=39.67  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      ....-+|||+|+++||..|+..|.|+.
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCce
Confidence            357789999999999999999999974

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=92.72  E-value=0.25  Score=34.75  Aligned_cols=54  Identities=19%  Similarity=0.090  Sum_probs=39.4

Q ss_pred             EEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEE
Q 025000           68 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLR  123 (259)
Q Consensus        68 ~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~  123 (259)
                      ++|.||...........+ +-|.+|++=++. +|  +.+.|.+||++.++++..-.+.
T Consensus         2 ~~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~-~g~~~D~~L~~G~~l~l~~g~~vvl~   57 (63)
T PF11142_consen    2 FELAPGETLSLRAAAGQR-LRVESGRVWLTR-EGDPDDYWLQAGDSLRLRRGGRVVLS   57 (63)
T ss_pred             EEeCCCceEEeEcCCCcE-EEEccccEEEEC-CCCCCCEEECCCCEEEeCCCCEEEEE
Confidence            356677655544333333 899999999998 54  5699999999999998765443

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=92.05  E-value=1.4  Score=35.52  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             EEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          203 GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       203 ~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      ..+.++|.+.+..+|....+.|||+++..++.+..+...++-
T Consensus        58 l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~   99 (172)
T PF14525_consen   58 LVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFSAGC   99 (172)
T ss_pred             EEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEECCCc
Confidence            357799999999999999999999999999999999877543

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.02  E-value=0.7  Score=43.24  Aligned_cols=54  Identities=19%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEE
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  134 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~  134 (259)
                      ..++|+++|+-+|++.+.. +=-...+++||++.||.|+..++.- ++.++.++.+
T Consensus       143 NADge~Livpq~G~l~l~t-e~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~E  197 (427)
T COG3508         143 NADGELLIVPQQGELRLKT-ELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCE  197 (427)
T ss_pred             cCCCCEEEEeecceEEEEE-eeceEEecCCcEEEeeCCceEEEEecCCceEEEEEe
Confidence            4789999999999999987 6556799999999999999999886 6667777654

>COG1741 Pirin-related protein [General function prediction only]

Probab=91.86  E-value=0.42  Score=43.43  Aligned_cols=68  Identities=16%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             EEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCC--CceeEEeC--CCccEEE
Q 025000          181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPF--VPQWYAAL--GKTRTRY  248 (259)
Q Consensus       181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~--~~H~~~n~--G~e~~~f  248 (259)
                      ++--.+.||.-.+.|.|-+.|-.-|+|+|+....|. |..-.++|||+-||.+|  +-|+=.|.  -++++..
T Consensus        46 ~~~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~  118 (276)
T COG1741          46 IGPDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHG  118 (276)
T ss_pred             cccccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccce
Confidence            344459999988887777787778999999999998 57889999999999875  45888876  2335543

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=91.57  E-value=1.9  Score=31.95  Aligned_cols=51  Identities=8%  Similarity=0.027  Sum_probs=38.7

Q ss_pred             CCceEEEEEEECEEEEEEcC------CcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEE
Q 025000           81 HDVERFIFVVQGSAMLTNAS------GVSSKLMVDSYTYLPPNFAHSLRA-EGSATLV  131 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~~------ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l  131 (259)
                      .+.-.-+-||+|++++..-+      .+...+.+|+..+++|...|++.- +.++++.
T Consensus        23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~   80 (82)
T PF09313_consen   23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQ   80 (82)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEE
T ss_pred             CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEE
Confidence            67777889999999998723      356799999999999999999997 3346654

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PRK11396 hypothetical protein; Provisional

Probab=91.37  E-value=5.4  Score=34.33  Aligned_cols=82  Identities=11%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             eEEEEecCCCCCcEEEE--EEEecCCCcCCCC-CCCceEEEEEEEC-EEEEEEcCCc-EEEEeCCcEEEeCCCCcEEEEe
Q 025000           50 LGAYLITPAMGSHFVMY--LANMQENARSALP-PHDVERFIFVVQG-SAMLTNASGV-SSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        50 ~~~~l~sp~~g~~f~~~--~~~l~Pg~~~~~h-~~~~Eef~yVl~G-~l~v~v~~ge-~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      +-.+...|..+.+|...  +.++..  ..+.. ..+.+.++.||+| .+++.. +++ .+.|++++.+.|+.+..-.-+.
T Consensus        21 TrEI~~~P~~~~dF~WRiSiA~I~~--~GpFS~FpGidR~i~lL~G~g~~L~~-~~~~~~~l~~~~p~~F~Gd~~v~a~L   97 (191)
T PRK11396         21 TREICTFPPAKRDFYWRASIASIAA--NGEFSLFPGMERIVTLLEGGEMFLES-ADRFNHTLKPLQPFAFAADQVVKAKL   97 (191)
T ss_pred             EEEEEEcCCCCCCceEEEEEEEecC--CCCCCCCCCccEEEEEEECCCEEEee-CCccceecCCCCCeEeCCCCeeEEEE
Confidence            44445567654567654  333433  23322 4789999999999 689987 664 5789999999999999887776


Q ss_pred             -CCeE-EEEEEE
Q 025000          125 -EGSA-TLVVFE  134 (259)
Q Consensus       125 -~~~a-~~l~v~  134 (259)
                       ++++ +-+-++
T Consensus        98 ~~G~v~~dfNvM  109 (191)
T PRK11396         98 TAGQMSMDFNIM  109 (191)
T ss_pred             CCCCeEEEEEEE
Confidence             5653 544443

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=91.28  E-value=2  Score=39.67  Aligned_cols=62  Identities=15%  Similarity=0.078  Sum_probs=40.9

Q ss_pred             EEEEEecCCC--cCCCCCCCceEEEEEEECEEEEEEcC----------------------CcEEEEeCCcEEEeCCCCcE
Q 025000           65 MYLANMQENA--RSALPPHDVERFIFVVQGSAMLTNAS----------------------GVSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        65 ~~~~~l~Pg~--~~~~h~~~~Eef~yVl~G~l~v~v~~----------------------ge~~~L~~Gd~i~~p~~~~H  120 (259)
                      ..-+-+.|++  +..+|....+-|++=++|+=+-.+..                      -.+++|+|||.+|+|+|..|
T Consensus       115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H  194 (319)
T PF08007_consen  115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH  194 (319)
T ss_dssp             EEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred             ceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence            3344456777  44667777899999999987666511                      12589999999999999999


Q ss_pred             EEEeCC
Q 025000          121 SLRAEG  126 (259)
Q Consensus       121 ~~~N~~  126 (259)
                      .-.+.+
T Consensus       195 ~~~~~~  200 (319)
T PF08007_consen  195 QAVTTD  200 (319)
T ss_dssp             EEEESS
T ss_pred             CCCCCC
Confidence            999854

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=91.26  E-value=0.79  Score=38.83  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=42.4

Q ss_pred             CCcccCcceeecc-ceEEEEEEceEEEEe-----C----CEEEEccCC----cEEEeCCCCceeEEeCCCccEEEEE
Q 025000          188 PGDFLNVKEVHYN-QHGLLLLEGQGIYRL-----G----DSWYPVQAG----DVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       188 PG~~~~~~~~H~~-eh~~~il~G~g~~~~-----~----g~~~~v~~G----D~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ||--=+.|-|+.. ..-..+++|+....+     +    |+|.-+.-+    -.+|+|+|+-|+|.|.|++. +++|
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~-~~~y  129 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA-EVVY  129 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce-EEEE
Confidence            7766555545544 577888999986443     2    245444433    46999999999999999987 4433

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=91.23  E-value=0.96  Score=41.07  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC--CCccEEEEEE
Q 025000          202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL--GKTRTRYLLY  251 (259)
Q Consensus       202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~fi~~  251 (259)
                      =++..|.|+|.+..+|+.+++.+.|.+|++.|..-..-+.  ...|++|.+.
T Consensus        76 ~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~  127 (276)
T PRK00924         76 LGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN  127 (276)
T ss_pred             EEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence            3578899999999999999999999999999987544432  2456776554

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=90.74  E-value=1.9  Score=32.83  Aligned_cols=81  Identities=12%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCE--EEEccCCcEEEeCCCCceeEEe
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      |++..+-+.-.+.+. ..  +=.+.||.+   .=.-...|.+-|++|+..+.|.|+  |....+|+..-+|.+..=.++.
T Consensus        10 GkV~S~~~~~~dG~~-~T--lGVm~pGeY---~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v   83 (94)
T PF06865_consen   10 GKVKSITFEFADGSK-KT--LGVMLPGEY---TFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKV   83 (94)
T ss_dssp             CTEEEEEEEETTSEE-EE--EEEE-SECE---EEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEE
T ss_pred             CeEEEEEEEcCCCCc-ce--EEEEeeeEE---EEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEE
Confidence            455555555444221 11  223457774   223345588999999999999985  9999999999999998888887


Q ss_pred             CCCccEEEEEE
Q 025000          241 LGKTRTRYLLY  251 (259)
Q Consensus       241 ~G~e~~~fi~~  251 (259)
                      .  ++..|||.
T Consensus        84 ~--~~~~Y~C~   92 (94)
T PF06865_consen   84 K--EPTAYLCS   92 (94)
T ss_dssp             S--S-EEEEEE
T ss_pred             C--cceeeEEE
Confidence            6  89999985

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=90.72  E-value=0.87  Score=38.13  Aligned_cols=74  Identities=22%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             EEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceE---EEEeCCE--------EEEccCCcEEEeCCCCc
Q 025000          168 RKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG---IYRLGDS--------WYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       168 ~~l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g---~~~~~g~--------~~~v~~GD~i~~~~~~~  235 (259)
                      +.|+ -++.++ +.+-.+|+.||.-.|. |.|.+--..=||.|.=   +|.+.++        ..-..+|.+- +.||.-
T Consensus        62 ~~LLh~d~~gf-ltV~~~t~~PG~~~p~-HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdi  138 (191)
T COG5553          62 ELLLHADPQGF-LTVYHITLSPGVQYPP-HNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDI  138 (191)
T ss_pred             eEEEEEccccc-EEEEEEEeCCCcccCC-cccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCe
Confidence            4444 456666 7788999999999996 5665545556666642   4444443        4456778777 888999


Q ss_pred             eeEEeCCCc
Q 025000          236 QWYAALGKT  244 (259)
Q Consensus       236 H~~~n~G~e  244 (259)
                      |++.|+|..
T Consensus       139 hsv~n~~sd  147 (191)
T COG5553         139 HSVANTGSD  147 (191)
T ss_pred             eeecccCCC
Confidence            999998865

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=90.29  E-value=2.6  Score=35.55  Aligned_cols=78  Identities=17%  Similarity=0.170  Sum_probs=45.3

Q ss_pred             EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceE-EEEEEceEEEE---eCCE----------EEEccCCcEEEeCC
Q 025000          167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG-LLLLEGQGIYR---LGDS----------WYPVQAGDVLWMAP  232 (259)
Q Consensus       167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~-~~il~G~g~~~---~~g~----------~~~v~~GD~i~~~~  232 (259)
                      .|.|+-.+..  +.+-.+...||..++. |-|...++ +.||+|+-.-.   ..+.          ...+..|.....++
T Consensus        65 ~r~ll~~~~~--~el~ll~W~pGq~S~I-HDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  141 (175)
T PF05995_consen   65 TRNLLYRDER--FELWLLCWPPGQRSPI-HDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDP  141 (175)
T ss_dssp             EEEEEEGGCT---EEEEEEE-TT-B--E-EE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTT
T ss_pred             eEEEEecCCC--eEEEEEEeCCCCcCCC-CCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCC
Confidence            4555533333  4455889999999996 67765555 67999987543   3433          23345555556677


Q ss_pred             CCceeEEeCC-CccEE
Q 025000          233 FVPQWYAALG-KTRTR  247 (259)
Q Consensus       233 ~~~H~~~n~G-~e~~~  247 (259)
                      +.-|.+.|.+ ++++.
T Consensus       142 ~~iH~v~n~s~~~~av  157 (175)
T PF05995_consen  142 HGIHRVENPSGDEPAV  157 (175)
T ss_dssp             TBEEEEEES-SSS-EE
T ss_pred             CCeEEeccCCCCCCEE
Confidence            8889999886 66654

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=90.04  E-value=0.92  Score=39.31  Aligned_cols=70  Identities=23%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEE-EEEceEEEEeCCE-------------E--E-------EccCCcEEEeCCCC
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLL-LLEGQGIYRLGDS-------------W--Y-------PVQAGDVLWMAPFV  234 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~-il~G~g~~~~~g~-------------~--~-------~v~~GD~i~~~~~~  234 (259)
                      .+.|.+|-|.||+.||. |-|+..+++. ||.|+..++-=+.             .  .       --.+++..++-|..
T Consensus        43 ~fsi~iF~lp~g~~IPL-HDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~  121 (200)
T PF07847_consen   43 DFSIGIFCLPPGAVIPL-HDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTS  121 (200)
T ss_pred             CcEEEEEEeCCCCEeCC-CCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCC
Confidence            67778999999999998 6676667764 8999887642110             0  0       12334544444443


Q ss_pred             ---ceeEEeCCCccEEEE
Q 025000          235 ---PQWYAALGKTRTRYL  249 (259)
Q Consensus       235 ---~H~~~n~G~e~~~fi  249 (259)
                         -|+|.|.. +++-||
T Consensus       122 ggNiH~f~a~~-~p~Afl  138 (200)
T PF07847_consen  122 GGNIHEFTALT-GPCAFL  138 (200)
T ss_pred             CCeeEEEEeCC-CCeEEE
Confidence               49999997 788776

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>PRK10579 hypothetical protein; Provisional

Probab=89.96  E-value=2.2  Score=32.52  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=57.5

Q ss_pred             ceEEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEE
Q 025000          163 EVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYA  239 (259)
Q Consensus       163 ~~~~~~~l~p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~  239 (259)
                      |.+..+-+.-.+.. +..    =.+.||..   .=.-...|.+=|++|+..+.|.|  +|...++|+..-+|.+.+=.++
T Consensus        10 Gkv~S~~~~~~dG~~kTl----GVm~pGey---~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~   82 (94)
T PRK10579         10 GKVKSIGFDSSSTGRASV----GVMAEGEY---TFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQ   82 (94)
T ss_pred             CeEEEEEEEcCCCCeeEE----EEEeeeEE---EEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEE
Confidence            45555555544432 221    12346663   12234458899999999999998  7999999999999999998888


Q ss_pred             eCCCccEEEEEE
Q 025000          240 ALGKTRTRYLLY  251 (259)
Q Consensus       240 n~G~e~~~fi~~  251 (259)
                      ..  ++..|+|.
T Consensus        83 v~--~~t~Y~C~   92 (94)
T PRK10579         83 VA--EPTSYLCR   92 (94)
T ss_pred             EC--cceeeEEE
Confidence            76  78889885

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=89.45  E-value=0.39  Score=41.49  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      -...++|||++|+|+|-.|+++|..+++
T Consensus       209 ~~~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  209 YEVVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             eEEEECCCeEEEECCCCeEEEEEcCCCC
Confidence            4568999999999999999999994333

...

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=89.27  E-value=2.8  Score=35.59  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             cCCcccCccee--eccceEEEEEEceEEEEe-C--------CEEEEc--cC--CcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          187 QPGDFLNVKEV--HYNQHGLLLLEGQGIYRL-G--------DSWYPV--QA--GDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       187 ~PG~~~~~~~~--H~~eh~~~il~G~g~~~~-~--------g~~~~v--~~--GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+|.-=+.|-|  +.+...+.|++|+..-.+ |        |+|..+  .+  +-.+|+|+|+-|||.+.+++ ..++|.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            55666565444  346778999999985432 1        344443  23  44999999999999999855 444444

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.26  E-value=1.5  Score=32.76  Aligned_cols=58  Identities=14%  Similarity=0.085  Sum_probs=42.7

Q ss_pred             EecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEEeCCcEEEeCCCCcEEEEeCCeE
Q 025000           69 NMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSA  128 (259)
Q Consensus        69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a  128 (259)
                      .+.||.-. ... ..-|..-|+.|.+++.+ +.+++.+-.+|+.+.+|++....++-.++.
T Consensus        29 Vm~~geyt-FgT-a~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat   87 (94)
T COG3123          29 VMAPGEYT-FGT-AAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT   87 (94)
T ss_pred             EEeceeEE-ecc-CCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence            45566433 111 23466789999999999 445778999999999999999988864433

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=86.86  E-value=1  Score=38.85  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=18.5

Q ss_pred             EEEEeCCcEEEeCCCCcEEEEeC
Q 025000          103 SSKLMVDSYTYLPPNFAHSLRAE  125 (259)
Q Consensus       103 ~~~L~~Gd~i~~p~~~~H~~~N~  125 (259)
                      +.+|+|||.+|||+|--|.++|.
T Consensus       210 ~~~l~pGD~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  210 EVVLEPGDVLFIPPGWWHQVENL  232 (251)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEES
T ss_pred             EEEECCCeEEEECCCCeEEEEEc
Confidence            46899999999999999999996

...

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=86.74  E-value=2.7  Score=35.66  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=44.8

Q ss_pred             CCCcCCCCC-CC-ceEEEEEEECEEEEEE---cCC-----c--EEEEeCC--cEEEeCCCCcEEEEe--CCeEEEEEEEE
Q 025000           72 ENARSALPP-HD-VERFIFVVQGSAMLTN---ASG-----V--SSKLMVD--SYTYLPPNFAHSLRA--EGSATLVVFER  135 (259)
Q Consensus        72 Pg~~~~~h~-~~-~Eef~yVl~G~l~v~v---~~g-----e--~~~L~~G--d~i~~p~~~~H~~~N--~~~a~~l~v~~  135 (259)
                      ||---+.|- +. ..+++.|+.|++-..+   ..|     +  ...|.+.  -.+++|+|..|.+.|  ++..-++++..
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~  133 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE  133 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence            443335562 22 4789999999986544   112     1  2355555  789999999999999  33445556666


Q ss_pred             ecccc
Q 025000          136 RYASL  140 (259)
Q Consensus       136 ~y~p~  140 (259)
                      .|.|-
T Consensus       134 ~Y~p~  138 (173)
T COG1898         134 EYDPE  138 (173)
T ss_pred             eeCcc
Confidence            77763

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=86.67  E-value=2.4  Score=36.01  Aligned_cols=69  Identities=19%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             cCCCcCCCCC---CCceEEEEEEECEEEEEEcC--------Cc--EEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEEE-
Q 025000           71 QENARSALPP---HDVERFIFVVQGSAMLTNAS--------GV--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF-  133 (259)
Q Consensus        71 ~Pg~~~~~h~---~~~Eef~yVl~G~l~v~v~~--------ge--~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~v-  133 (259)
                      .+|.--+.|.   +....++.|+.|++...+-|        |+  ...|.+  +..+|||+|..|.|.+ ...+.++.. 
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~  131 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC  131 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence            3443335552   45789999999998655411        12  356666  5599999999999998 444555544 


Q ss_pred             EEeccc
Q 025000          134 ERRYAS  139 (259)
Q Consensus       134 ~~~y~p  139 (259)
                      ...|.|
T Consensus       132 ~~~y~p  137 (176)
T TIGR01221       132 TDYYAP  137 (176)
T ss_pred             CCCcCc
Confidence            455555

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=86.18  E-value=5.5  Score=33.43  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE----c------CCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----A------SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v----~------~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l  131 (259)
                      .|.++.+++.||..++.|.|...-.+=|+.|.-+=.+    +      +++...+.+|..- ..||..|++.|..+.|- 
T Consensus        72 fltV~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs-  149 (191)
T COG5553          72 FLTVYHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRS-  149 (191)
T ss_pred             cEEEEEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCcc-
Confidence            4999999999999999998877777777777543222    1      3455577888877 77799999999776655 


Q ss_pred             EEEEeccc-cCCCCcceeec
Q 025000          132 VFERRYAS-LENHITEQIVG  150 (259)
Q Consensus       132 ~v~~~y~p-~~g~~p~~~v~  150 (259)
                      ...+.|.+ +.+ .+..+++
T Consensus       150 ~aiHvy~a~ig~-~~r~~fs  168 (191)
T COG5553         150 GAIHVYLADIGG-TDRQLFS  168 (191)
T ss_pred             ceEEEEecccCC-Ccceeee
Confidence            34455665 343 3555554

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=86.06  E-value=2.8  Score=32.61  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=39.7

Q ss_pred             cCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCC--CCcEEEEe--C-CeEEEE
Q 025000           75 RSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP--NFAHSLRA--E-GSATLV  131 (259)
Q Consensus        75 ~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~--~~~H~~~N--~-~~a~~l  131 (259)
                      ..+.| +.+.|.+-||++|+++-.-.-|...+|++||.-+.-|  |+.|.=+|  + ++++++
T Consensus        41 gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l  103 (107)
T PF02678_consen   41 GFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL  103 (107)
T ss_dssp             EEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred             CCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence            34555 5678888899999998764235667899999999887  45676667  2 355554

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=85.98  E-value=0.59  Score=39.82  Aligned_cols=51  Identities=16%  Similarity=0.277  Sum_probs=35.1

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ....-++|+++|++++.. +++.+.|.+||.+.+..  ++...-.+..+++|+.
T Consensus       133 ~~~~~l~~~~~G~~~i~~-~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~  183 (184)
T PF05962_consen  133 AASTVLVYVLEGAWSITE-GGNCISLSAGDLLLIDD--EEDLPLTGDGQLLWVS  183 (184)
T ss_dssp             --SEEEEEESSS-EEECC-CEEEEEE-TT-EEEEES--EECEEEEEECCEEEEE
T ss_pred             CCCEEEEEEeeCcEEEec-CCCceEcCCCCEEEEeC--CCceEecCCeeEEEEe
Confidence            456778999999988886 77899999999999987  3333224566777764

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=85.60  E-value=1.6  Score=41.10  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=37.8

Q ss_pred             EecCCCcCCCCCCCceEEEEEEECEEEEEEcCC----------------------cEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000           69 NMQENARSALPPHDVERFIFVVQGSAMLTNASG----------------------VSSKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus        69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g----------------------e~~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      -.++||+-+.|-...+-|++=..|+=+=.+ +.                      ...+|.|||.+|+|++.+|.=....
T Consensus       125 ~a~~GGgvg~H~D~YDVfliQg~G~RRW~v-~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~  203 (383)
T COG2850         125 FAAPGGGVGPHFDQYDVFLIQGQGRRRWRV-GKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED  203 (383)
T ss_pred             EecCCCccCccccchheeEEeecccceeec-CCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence            344666666666666666555555444333 11                      2357999999999999999866543


Q ss_pred             eE
Q 025000          127 SA  128 (259)
Q Consensus       127 ~a  128 (259)
                      +|
T Consensus       204 dc  205 (383)
T COG2850         204 DC  205 (383)
T ss_pred             cc
Confidence            33

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=84.83  E-value=7  Score=33.10  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=37.1

Q ss_pred             cCCcccCcceeec---cceEEEEEEceEEEEe-C--------CEEEEc--cCCc--EEEeCCCCceeEEeCCCc
Q 025000          187 QPGDFLNVKEVHY---NQHGLLLLEGQGIYRL-G--------DSWYPV--QAGD--VLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       187 ~PG~~~~~~~~H~---~eh~~~il~G~g~~~~-~--------g~~~~v--~~GD--~i~~~~~~~H~~~n~G~e  244 (259)
                      .+|.-=+.|-+..   +...+.|++|+....+ |        |+|..+  .+++  .+|+|+|+-|||.+.+++
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~  124 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD  124 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence            3466655533322   2355789999874332 2        666655  4454  799999999999999775

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PRK15186 AraC family transcriptional regulator; Provisional

Probab=83.45  E-value=2.7  Score=38.41  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=37.5

Q ss_pred             ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           83 VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        83 ~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      .--+++|.+|++++.-.+|++..+.+++.+++|.+..|.+.|
T Consensus        38 ~~~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~   79 (291)
T PRK15186         38 QSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITM   79 (291)
T ss_pred             ceEEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEe
Confidence            456899999999998745677899999999999999999998

>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators

Probab=83.44  E-value=8.1  Score=31.67  Aligned_cols=43  Identities=12%  Similarity=0.029  Sum_probs=38.3

Q ss_pred             CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      -...-+++|++|+=++.+ |++.+.-.+|+++..+.+.|-..+-
T Consensus        21 ~y~p~i~~vlQG~K~~~~-g~~~~~Y~~g~~lv~~~~lPv~~~v   63 (155)
T PF06719_consen   21 VYEPSICIVLQGSKRVHL-GDQVFEYDAGQYLVSSVDLPVESEV   63 (155)
T ss_pred             ecCCeEEEEEeeeEEEEE-CCceEEecCCcEEEecCCCcEEEEE
Confidence            344668999999999999 9999999999999999999988764

In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=83.30  E-value=5.1  Score=34.69  Aligned_cols=68  Identities=16%  Similarity=0.111  Sum_probs=55.0

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  133 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v  133 (259)
                      .+-.+.+..+.||.+.+.|.|.+-|.+.|++|...=..  |   .+.+||+..-+.++.|+-+-  +++|-.|..
T Consensus       126 ds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sde~--G---~y~vgD~~~~d~~v~H~piv~~~~eClcl~a  195 (216)
T COG3806         126 DSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSDEN--G---EYLVGDFTLADGTVQHSPIVLPPGECLCLAA  195 (216)
T ss_pred             CCceeEEEEeccCcccccccccceEEEEEEeeccccCC--C---ccccCceeecCCccccccccCCCCCceEEEE
Confidence            35667788899999999999999999999999877554  2   68999999999999998553  556655553

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=82.46  E-value=5.5  Score=33.74  Aligned_cols=58  Identities=21%  Similarity=0.433  Sum_probs=37.2

Q ss_pred             CceEEEEEEECEEEEEEcC--------Cc--EEEEeCCc--EEEeCCCCcEEEEe-CCeEEEEE-EEEeccc
Q 025000           82 DVERFIFVVQGSAMLTNAS--------GV--SSKLMVDS--YTYLPPNFAHSLRA-EGSATLVV-FERRYAS  139 (259)
Q Consensus        82 ~~Eef~yVl~G~l~v~v~~--------ge--~~~L~~Gd--~i~~p~~~~H~~~N-~~~a~~l~-v~~~y~p  139 (259)
                      ....++.|++|++...+-|        |+  ...|.++.  .+|||+|..|.|.+ +..+.++. +...|.|
T Consensus        66 ~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~~y~p  137 (176)
T PF00908_consen   66 AQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTNYYDP  137 (176)
T ss_dssp             -EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS---G
T ss_pred             CCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEecCCccCc
Confidence            4578999999998554412        33  35777776  69999999999999 44444444 4445555

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PHA00672 hypothetical protein

Probab=81.82  E-value=8.4  Score=31.02  Aligned_cols=70  Identities=14%  Similarity=0.104  Sum_probs=56.3

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .--|.++++.|.-+- --.|-.++. +|++|...+..||+...+..=-+|--++|..+.+++--|+.+.-|-
T Consensus        47 vYARei~IPkGt~Lt-G~~hkf~~~-ii~sG~itV~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt~~h  116 (152)
T PHA00672         47 VYARTIRIPAGVALT-GALIKVSTV-LIFSGHATVFIGGEAVELRGYHVIPASAGRKQAFVAHADTDLTMLF  116 (152)
T ss_pred             eeEEEEeccCceeee-eeeeEeeEE-EEecccEEEEeCCcEEEEecceeeecCCCcccceeeeccceEEEEe
Confidence            344677777776653 356767666 9999999999999999999999999999999999998777766543

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=81.49  E-value=14  Score=32.97  Aligned_cols=87  Identities=10%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             EEEEeeCCCCCcc-eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEE----------EccCCcEEEeCCCC
Q 025000          166 QLRKLLPQAVPFD-FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY----------PVQAGDVLWMAPFV  234 (259)
Q Consensus       166 ~~~~l~p~~~~~~-~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~----------~v~~GD~i~~~~~~  234 (259)
                      .++.+.|++.++. --|++..|++|.+.-. ..-..|-++.+++|+..+...|+..          +=+|=|.+|++.|.
T Consensus        15 ~v~~vtp~sagw~YVGF~~~~L~~Ges~~~-~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~   93 (270)
T COG3718          15 LVQDVTPESAGWEYVGFRLLRLAAGESATE-ETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGS   93 (270)
T ss_pred             ceEEecCCCCCceeEEEEEEEccCCCcccc-cCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCc
Confidence            4556778877764 6899999999999864 6666777788899999999887432          23466999999999


Q ss_pred             ceeEEeCCCccEEEEEEeec
Q 025000          235 PQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       235 ~H~~~n~G~e~~~fi~~k~~  254 (259)
                      .=++.++++-. +=+|+-..
T Consensus        94 ~~~vtA~t~~~-vAvC~AP~  112 (270)
T COG3718          94 AFSVTATTDLE-VAVCSAPG  112 (270)
T ss_pred             eEEEEeecceE-EEEEeCCC
Confidence            88888887642 23454443

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=80.87  E-value=9.5  Score=28.25  Aligned_cols=47  Identities=21%  Similarity=0.131  Sum_probs=36.1

Q ss_pred             eEEEEEEceEEEEeCC-------EEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          202 HGLLLLEGQGIYRLGD-------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       202 h~~~il~G~g~~~~~g-------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      --+-||+|+..|+.-+       +..-+.+|+..+++|...|-++..++ |++|-
T Consensus        27 g~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~-D~~f~   80 (82)
T PF09313_consen   27 GKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD-DLRFQ   80 (82)
T ss_dssp             EEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST-T-EEE
T ss_pred             EEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC-CEEEE
Confidence            4578999999887543       67889999999999999999999974 45554

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=80.68  E-value=4.7  Score=30.45  Aligned_cols=25  Identities=16%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             EEEEeCCcEEEeCCCCcEEEEeCCe
Q 025000          103 SSKLMVDSYTYLPPNFAHSLRAEGS  127 (259)
Q Consensus       103 ~~~L~~Gd~i~~p~~~~H~~~N~~~  127 (259)
                      ..+-++||++++|||..|...|.+.
T Consensus        82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   82 RFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cceECCCCEEEECCCceEEEEeCCc
Confidence            4689999999999999999999553

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=80.26  E-value=6  Score=37.39  Aligned_cols=103  Identities=15%  Similarity=0.120  Sum_probs=53.5

Q ss_pred             EEEeCCcEEEeCCCCcEEEEeCCeEEEE-----EEEEeccccCCCCcceeec----cCCCC---CCcc-----cCC-ceE
Q 025000          104 SKLMVDSYTYLPPNFAHSLRAEGSATLV-----VFERRYASLENHITEQIVG----STDKQ---PLLE-----TPG-EVF  165 (259)
Q Consensus       104 ~~L~~Gd~i~~p~~~~H~~~N~~~a~~l-----~v~~~y~p~~g~~p~~~v~----~~~di---~~~~-----~~g-~~~  165 (259)
                      ..|++|+.+|+|||.+|.|-.-.-+++.     +++      .|..|..+--    ++-+.   +..+     ... .. 
T Consensus       252 v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVlR------aGLTpK~iDv~~L~~~l~y~~~~~~~~~~~~~~~~~~-  324 (373)
T PF01238_consen  252 VELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVLR------AGLTPKHIDVPELLEMLTYKPKPPEPAILPPDAPYDS-  324 (373)
T ss_dssp             EEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEEE------CCSCSSEEEHHHHHHC-EEEEEEGGGCCE--ECCEEE-
T ss_pred             EEecCCceEEecCCCccccccccceeccccccceec------cCCccceeEHhHheeeeEeeccCCcceeecCccccCC-
Confidence            5899999999999999999852222222     111      2333332200    00010   1111     110 00 


Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD  217 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g  217 (259)
                      ......|  .-.+|.+..++++.|.+.-  ....-..++++++|++.+..++
T Consensus       325 ~~~~y~p--p~~eF~l~~~~l~~g~~~~--~~~~~~~Illv~~G~~~i~~~~  372 (373)
T PF01238_consen  325 GSVLYGP--PVDEFALSRIDLKKGESFI--LPLDGPSILLVTEGSATIIVSH  372 (373)
T ss_dssp             CEEEEEE--SSSSEEEEEEECCTTEEEE--E-TTS-EEEEEEEEEEEEEETT
T ss_pred             ceEEECC--CCCeEEEEEEEECCCCeEE--CCCCCceEEEEeCCEEEEEeCC
Confidence            0111223  2357888889998776532  2224458899999999998875

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
4e2q_A	266	Crystal Structure Of (S)-Ureidoglycine Aminohydrola		1e-127
1sfn_A	246	Crystal Structure Of Protein Dr1152 From Deinococcu		4e-43
1sef_A	274	Crystal Structure Of Cupin Domain Protein Ef2996 Fr		3e-29
1rc6_A	261	Crystal Structure Of Protein Ylba From E. Coli, Pfa		1e-24
1sq4_A	278	Crystal Structure Of The Putative Glyoxylate Induce		1e-23

>pdb|4E2Q|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From Arabidopsis Thaliana Length = 266

Iteration: 1
 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/259 (82%), Positives = 229/259 (88%)
Query: 1   MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
           +YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct: 8   IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 67
Query: 61  SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
           SHFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPNF H
Sbjct: 68  SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHH 127
Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
           SL    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct: 128 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 187
Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
           IH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 188 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 247
Query: 241 LGKTRTRYLLYKDVNRNPL 259
           LGKTR+RYLLYKDVNRNPL
Sbjct: 248 LGKTRSRYLLYKDVNRNPL 266

>pdb|1SFN|A Chain A, Crystal Structure Of Protein Dr1152 From Deinococcus Radiodurans R1, Pfam Duf861 Length = 246

Iteration: 1
 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/248 (39%), Positives = 137/248 (55%), Gaps = 15/248 (6%)
Query: 20  GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSA 77
           G TRS     HA+ITPE+ V + L EW  +     I P   +G+ FV + A M   A++ 
Sbjct: 5   GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQAT 64
Query: 78  LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 137
              +  +RF FV+ G   +    G +  L    Y YLP    H L A+  A + VFE+ Y
Sbjct: 65  ESVY--QRFAFVLSGEVDVA-VGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121
Query: 138 ASLENHITEQIVGSTDKQPLLETPGEVFQ------LRKLLPQAVPFDFNIHIMDFQPGDF 191
            ++E      +    ++    E PG  F+       RKLLP    FDF +  M F PG  
Sbjct: 122 QTVEGVQAPGVYWGNER----ENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGAS 177
Query: 192 LNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251
           L   EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM    PQWY ALG+  ++YLLY
Sbjct: 178 LPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY 237
Query: 252 KDVNRNPL 259
           KD+NR+PL
Sbjct: 238 KDMNRHPL 245

>pdb|1SEF|A Chain A, Crystal Structure Of Cupin Domain Protein Ef2996 From Enterococcus Faecalis Length = 274

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 8/244 (3%)
Query: 22  TRSVYKRDHALITP-ESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENAR--SAL 78
           +R+V K+D+  I P +  V + +P + N   + L +P +G+ FV Y+A   +N +  +  
Sbjct: 20  SRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGF 79
Query: 79  PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR--AEGSATLVVFERR 136
               ++  ++V+ G   +++    + +L    Y Y  P     L    E    + ++++R
Sbjct: 80  GGDGIQTLVYVIDGRLRVSDGQ-ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKR 138
Query: 137 YASLENHITEQIVGST-DKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
           Y  L  H   ++VGS  D+QP          L  LLP+   FD N+HI+ F+PG      
Sbjct: 139 YQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYI 198
Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR-TRYLLYKDV 254
           E H  +HG  L+ GQG+Y L + WYPV+ GD ++M+ +VPQ   A+G+     Y+  KD 
Sbjct: 199 ETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA 258
Query: 255 NRNP 258
           NR P
Sbjct: 259 NREP 262

>pdb|1RC6|A Chain A, Crystal Structure Of Protein Ylba From E. Coli, Pfam Duf861 Length = 261

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 22  TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 80
            R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N  +    
Sbjct: 17  NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76
Query: 81  HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 135
               +E F++V+ G+ +   A G +  L    Y Y PP    +    +AE S  + +++R
Sbjct: 77  GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134
Query: 136 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 194
           RY  +E +    + G+  +   +   G +   L   LP+ + FD N+HI+ F PG     
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194
Query: 195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 253
            E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254
Query: 254 VNRN 257
            NR+
Sbjct: 255 CNRD 258

>pdb|1SQ4|A Chain A, Crystal Structure Of The Putative Glyoxylate Induced Protein From Pseudomonas Aeruginosa, Northeast Structural Genomics Target Par14 Length = 278

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 11/229 (4%)
Query: 39  VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALPPHD--VERFIFVVQGSA 94
           V S LP W N     +  P  G    F  Y+  +  N  S  P  D   E  +FVV+G  
Sbjct: 42  VTSHLPFWDNXRXWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGEL 101
Query: 95  MLTNASGVSSKLMVDSYTYLPPNFAHSLR-AEGSATLVVFERRYASLENHI---TEQIVG 150
            LT   G         Y ++PP   + +R   G  T   + R++    + +      +  
Sbjct: 102 SLT-LQGQVHAXQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTN 160
Query: 151 STDKQPLL--ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE 208
             D QPL+  +T G     R +       D +++I++F+PG  +   E H  +HGL +LE
Sbjct: 161 EQDIQPLVXPDTEGRWSTTRFVDXSDXRHDXHVNIVNFEPGGVIPFAETHVXEHGLYVLE 220
Query: 209 GQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN 257
           G+ +YRL   W  V+AGD  W+  F PQ   + G  R RYLLYKDVNR+
Sbjct: 221 GKAVYRLNQDWVEVEAGDFXWLRAFCPQACYSGGPGRFRYLLYKDVNRH 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	1e-110
1sfn_A	246	Conserved hypothetical protein; structural genomic	8e-88
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	3e-82
1sef_A	274	Conserved hypothetical protein; structural genomic	2e-81
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	2e-73
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	1e-11
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	5e-11
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	4e-09
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	1e-07
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	2e-06
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	8e-07
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	2e-06
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	4e-05
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	6e-06
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	6e-06
1v70_A	105	Probable antibiotics synthesis protein; structural	1e-05
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	2e-05
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	9e-05
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	3e-04
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	5e-04
3h8u_A	125	Uncharacterized conserved protein with double-STR	9e-04

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Length = 266

 Score =  317 bits (814), Expect = e-110
 Identities = 214/258 (82%), Positives = 228/258 (88%)

Query: 2   YWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGS 61
           YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA GS
Sbjct: 9   YWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATGS 68

Query: 62  HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS 121
           HFVMYLA M+E + S LPP D+ER IFVV+G+  LTN S  S KL VDSY YLPPNF HS
Sbjct: 69  HFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHHS 128

Query: 122 LRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNI 181
           L    SATLVVFERRY  L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFNI
Sbjct: 129 LDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNI 188

Query: 182 HIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 241
           H MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAAL
Sbjct: 189 HTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248

Query: 242 GKTRTRYLLYKDVNRNPL 259
           GKTR+RYLLYKDVNRNPL
Sbjct: 249 GKTRSRYLLYKDVNRNPL 266

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Length = 246

 Score =  260 bits (665), Expect = 8e-88
 Identities = 97/244 (39%), Positives = 134/244 (54%), Gaps = 7/244 (2%)

Query: 20  GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSA 77
           G TRS     HA+ITPE+ V + L EW  +     I P   +G+ FV + A M   A++ 
Sbjct: 5   GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQA- 63

Query: 78  LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 137
                 +RF FV+ G   +    G +  L    Y YLP    H L A+  A + VFE+ Y
Sbjct: 64  -TESVYQRFAFVLSGEVDVAVG-GETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121

Query: 138 ASLENHITEQ-IVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
            ++E         G+  + P     G +    RKLLP    FDF +  M F PG  L   
Sbjct: 122 QTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYA 181

Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN 255
           EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM    PQWY ALG+  ++YLLYKD+N
Sbjct: 182 EVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN 241

Query: 256 RNPL 259
           R+PL
Sbjct: 242 RHPL 245

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Length = 261

 Score =  246 bits (629), Expect = 3e-82
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 13  SHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQE 72
            + +DL      V   + AL+TP+  V + +P + N     L TP +G+ FV YL  + +
Sbjct: 9   GYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQ 68

Query: 73  NARSALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--A 128
           N  +        +E F++V+ G+       G +  L    Y Y PP    +     +  +
Sbjct: 69  NGGNQQGFGGEGIETFLYVISGNITAKAE-GKTFALSEGGYLYCPPGSLMTFVNAQAEDS 127

Query: 129 TLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQ 187
            + +++RRY  +E +    + G+  +   +   G +   L   LP+ + FD N+HI+ F 
Sbjct: 128 QIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFA 187

Query: 188 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT- 246
           PG      E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+    
Sbjct: 188 PGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAF 247

Query: 247 RYLLYKDVNRNP 258
            Y+  KD NR+ 
Sbjct: 248 SYIYSKDCNRDV 259

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Length = 274

 Score =  244 bits (625), Expect = 2e-81
 Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 8/250 (3%)

Query: 16  QDLPGFTRSVYKRD-HALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENA 74
           Q     +R+V K+D +A+I  +  V + +P + N   + L +P +G+ FV Y+A   +N 
Sbjct: 14  QKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNG 73

Query: 75  RS--ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATL 130
           +         ++  ++V+ G   +++    + +L    Y Y  P     L         +
Sbjct: 74  QQTTGFGGDGIQTLVYVIDGRLRVSDG-QETHELEAGGYAYFTPEMKMYLANAQEADTEV 132

Query: 131 VVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPG 189
            ++++RY  L  H   ++VGS   Q   E  G     L  LLP+   FD N+HI+ F+PG
Sbjct: 133 FLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPG 192

Query: 190 DFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RY 248
                 E H  +HG  L+ GQG+Y L + WYPV+ GD ++M+ +VPQ   A+G+     Y
Sbjct: 193 ASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMY 252

Query: 249 LLYKDVNRNP 258
           +  KD NR P
Sbjct: 253 VYSKDANREP 262

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Length = 278

 Score =  224 bits (571), Expect = 2e-73
 Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 14/256 (5%)

Query: 16  QDLPGFTRSVYKRDHALITP---ESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANM 70
           Q      R+++   +A+I        V S LP W N     +  P  G    F  Y+  +
Sbjct: 16  QTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVEL 75

Query: 71  QENARSALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS- 127
             N  S  P  D   E  +FVV+G   LT   G    +    Y ++PP   + +R     
Sbjct: 76  APNGGSDKPEQDPNAEAVLFVVEGELSLTLQ-GQVHAMQPGGYAFIPPGADYKVRNTTGQ 134

Query: 128 -ATLVVFERRYASLENHITEQIVGSTD----KQPLLETPGEVFQLRKLLPQAVPFDFNIH 182
                   + Y  ++     +   + +       + +T G     R +    +  D +++
Sbjct: 135 HTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVN 194

Query: 183 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 242
           I++F+PG  +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   + G
Sbjct: 195 IVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGG 254

Query: 243 KTRTRYLLYKDVNRNP 258
             R RYLLYKDVNR+ 
Sbjct: 255 PGRFRYLLYKDVNRHM 270

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 153 DKQPLLETPGEVFQ--LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ 210
           D     E     F+   R++L         +   +  PG      E H + HG+++L+G+
Sbjct: 25  DLLAYKEEGSAPFRSVTRQVLFSGNGLTGELRYFEVGPGGHST-LERHQHAHGVMILKGR 83

Query: 211 GIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN 257
           G   +G +   V   D++ +  +    + A       +L   +  R+
Sbjct: 84  GHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAERD 130

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 58.4 bits (141), Expect = 5e-11
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 168 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDV 227
           R+LL             +   G +    E H + H +++  G G   +G++   V  GD+
Sbjct: 33  RQLLFADPNLACEWRYFEVDEGGYST-LERHAHVHAVMIHRGHGQCLVGETISDVAQGDL 91

Query: 228 LWMAPFVPQWYAALGKTRTRYLLYKDVNRN 257
           +++ P     + A       +L   +  R+
Sbjct: 92  VFIPPMTWHQFRANRGDCLGFLCVVNAARD 121

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 27/175 (15%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 81  HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERRYAS 139
               R+ +   G+  +         +    +  +  N  +S+ A +    + + E+    
Sbjct: 55  MLGNRYYYCFNGNGEIF-IENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGDG 113

Query: 140 LENHITEQIVGSTDKQPLLE----TPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
              + T +++ S     L E      G++   + L+ +    +  + IM F  G+ L+  
Sbjct: 114 NMENKTLKMLESASAFNLAEVVEYQEGKIVS-KNLVAKP---NLVMTIMSFWKGESLD-P 168

Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250
                   + +L+G+G Y +    + V+ G+   +   +P    A  +   + LL
Sbjct: 169 HKAPGDALVTVLDGEGKYYVDGKPFIVKKGESAVLPANIPHAVEAETE-NFKMLL 222

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 15/112 (13%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 141 ENHITEQIVGSTDKQPLLETPGEVF---QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEV 197
            +H    I+         +   +     + R L+      +F + +   +PG  ++ +  
Sbjct: 7   HHHHHHMILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLID-RHS 65

Query: 198 HYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249
           H  +H + +L+G+           V+ G  +++ P     +     +   +L
Sbjct: 66  HPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFL 117

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 54  LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY 113
           LI      +FVM L  ++         H  E  IFV++G   +         +    Y +
Sbjct: 39  LIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIF 97

Query: 114 LPPNFAHSLRAEGSATLVVF 133
           + PN  H  R +  + +   
Sbjct: 98  VEPNEIHGFRNDTDSEVEFL 117

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 179 FNIHIMDFQPGDFLNVKEVHYNQHGL-LLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW 237
             + I     G  +     H     +  +L G+G   +      +QAGD L +AP   + 
Sbjct: 26  AEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKIELQAGDWLRIAPDGKRQ 85

Query: 238 YAALGKTRTRYL 249
            +A   +   +L
Sbjct: 86  ISAASDSPIGFL 97

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWY 238
           F     + +PG +    E H + H ++++ G     L D   P+   D +++AP      
Sbjct: 56  FETRYFEVEPGGYTT-LERHEHTHVVMVVRGHAEVVLDDRVEPLTPLDCVYIAPHAWHQI 114

Query: 239 AALGKTRT-RYLLYKDVNRN 257
            A G      +L   D +R+
Sbjct: 115 HATGANEPLGFLCIVDSDRD 134

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 17/128 (13%)

Query: 53  YLITPAMG---SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVD 109
            L+    G     F      ++    + L  H+    + VV+G A +         L   
Sbjct: 43  TLVGRPAGQEAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD-DRVEPLTPL 101

Query: 110 SYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRK 169
              Y+ P+  H + A G+   + F              IV S   +P      ++ ++  
Sbjct: 102 DCVYIAPHAWHQIHATGANEPLGF---LC---------IVDSDRDRPQRPDADDLARMCA 149

Query: 170 LLPQAVPF 177
             P     
Sbjct: 150 -DPAVARR 156

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVP 235
            F +   +  P         H  +H + +LEG     L D      V  G+ +++    P
Sbjct: 38  RFVLTEFEVSPNGSTP-PHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEP 96

Query: 236 QWYAALGKTRTRYL 249
             +        R+L
Sbjct: 97  HGFVTGPGQTCRFL 110

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 42  PLPEWTNTLGAYLITPAMGS-HFVMYLANMQENARSALPPHDVERFIFVVQGSA-MLTNA 99
             P    T    LI    G+  FV+    +  N  +    H+ E  I+V++GS  ++   
Sbjct: 17  REPGAKETTHRKLIDTPDGADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD 76

Query: 100 SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 133
            G + ++      ++P    H        T    
Sbjct: 77  QGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFL 110

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 178 DFNIHIMDFQPGDFLNVKEVHYNQHG---LLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV 234
                +    PG      +VH ++        LEG+ + R+G+    +  G   +     
Sbjct: 27  RMLYDLYALLPGQAQ---KVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGA 83

Query: 235 PQWYAALGKTRTRYL 249
           P        +    L
Sbjct: 84  PHGVRNESASPALLL 98

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Length = 192

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 165 FQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG----LLLLEGQGIYRLGDSWY 220
            ++  L P A      I  +         +   H    G    + +LEG       + W+
Sbjct: 90  MKIHTLFPYAADTGLEIFEITLLDHHQQ-MSSPH--ALGVIEYIHVLEGIMKVFFDEQWH 146

Query: 221 PVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250
            +Q G+ +      P  YAA+ +      +
Sbjct: 147 ELQQGEHIRFFSDQPHGYAAVTEKAVFQNI 176

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 179 FNIHIMDFQPGDFLNV-KEVHYNQH-GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 236
                M   PGD        H      L +++G G   +      +QAG ++ +      
Sbjct: 21  VQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAH 80

Query: 237 WYAALGKTRTRYL 249
                G T  + +
Sbjct: 81  EIRNTGDTPLKTV 93

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Length = 162

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 161 PGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSW 219
           PG V   + L          IH++  +PG         HY +  + +L G+G   + +  
Sbjct: 28  PGAVRVNKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ 87

Query: 220 YPVQAGDVLWM-APFVPQWYAALGKTRTRYL 249
           YP+  GD +           +  G      L
Sbjct: 88  YPIAPGDFVGFPCHAAAHSISNDGTETLVCL 118

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Length = 243

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 10/208 (4%)

Query: 43  LPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGV 102
           L EW N +  Y           + ++ +  +       H   +   VV G  M+T     
Sbjct: 17  LIEWENGVRQYSTV---RGDTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDVT 73

Query: 103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLE-TP 161
                ++S    PP+  H  R +    ++  + +    +   T       D     +  P
Sbjct: 74  RKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLP 133

Query: 162 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYP 221
           G        +   V     I +              H N+   + + G     +      
Sbjct: 134 G------MEVTFFVEDWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCTVE 187

Query: 222 VQAGDVLWMAPFVPQWYAALGKTRTRYL 249
           ++ G   +  P          +  ++ +
Sbjct: 188 MKFGTAYFCEPREDHGAINRSEKESKSI 215

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 80  PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 134
           PH  + +  V+ G A     +G+ + L         P   H     G    +   
Sbjct: 58  PHGQDTWT-VISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVS 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	100.0
1sfn_A	246	Conserved hypothetical protein; structural genomic	100.0
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	100.0
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	100.0
1sef_A	274	Conserved hypothetical protein; structural genomic	100.0
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.97
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.96
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.95
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.93
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.93
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.93
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.91
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.9
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.84
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.77
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.75
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.75
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.74
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.74
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.72
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.72
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.71
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.7
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.7
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.69
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.68
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.65
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.65
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	99.63
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.61
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.59
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.58
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.57
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.55
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.55
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.54
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.54
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.54
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.54
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.54
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.54
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.54
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.54
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.52
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.52
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.52
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.52
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.52
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.52
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.51
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.51
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.5
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.5
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.49
1v70_A	105	Probable antibiotics synthesis protein; structural	99.49
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.49
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.48
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.48
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.48
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.48
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.48
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.48
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.48
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.47
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.47
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.47
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.47
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.47
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.47
1sef_A	274	Conserved hypothetical protein; structural genomic	99.46
1v70_A	105	Probable antibiotics synthesis protein; structural	99.46
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.46
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.46
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.46
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.46
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.46
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.45
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.45
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.45
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.44
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.44
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.43
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.43
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.43
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.43
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.43
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.43
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.42
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.41
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.4
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.4
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.4
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.39
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.39
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.38
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.38
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.38
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.38
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.37
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.37
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.37
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.36
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.34
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.33
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.33
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.33
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.32
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.31
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.31
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.31
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.29
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.29
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.27
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.27
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.25
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.25
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.23
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.23
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.22
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.22
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.21
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	99.2
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.2
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.19
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.18
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	99.18
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.18
3bcw_A	123	Uncharacterized protein; structural genomics, join	99.18
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.18
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.18
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	99.17
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.16
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.15
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	99.15
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.15
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	99.14
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.13
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.13
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.11
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	99.1
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	99.09
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.08
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.07
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.01
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.0
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.99
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.98
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.96
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.85
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.83
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.83
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.82
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.78
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.77
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.77
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.75
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.75
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.67
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.61
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.6
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.56
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.56
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.55
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.53
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	98.51
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	98.48
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	98.47
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.47
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.47
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	98.46
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	98.44
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.41
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.4
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.4
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.37
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.36
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	98.31
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	98.31
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.28
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	98.24
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.15
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	98.1
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.09
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.07
3uss_A	211	Putative uncharacterized protein; cupin, three his	98.02
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.02
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	98.0
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.99
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.96
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.94
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	97.92
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.91
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.89
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	97.81
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	97.76
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.66
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.54
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	97.38
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.32
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.32
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.24
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	97.16
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.04
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	96.91
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	96.7
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	96.65
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.6
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	96.04
1yll_A	200	PA5104, conserved hypothetical protein; structural	95.71
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	95.66
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	95.56
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	95.35
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	95.3
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	95.23
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	95.01
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	94.97
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	94.96
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	94.92
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	94.75
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	94.73
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	94.68
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	94.61
3esg_A	193	HUTD, putative uncharacterized protein; beta barre	94.16
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	94.12
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	93.96
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	93.71
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	93.61
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	93.39
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	93.37
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	93.35
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	93.26
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	93.17
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	93.01
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	92.98
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	92.35
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	92.26
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	92.26
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	92.09
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	92.05
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	91.38
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	91.37
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	91.36
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	91.26
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	91.2
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	90.97
4diq_A	489	Lysine-specific demethylase NO66; structural genom	90.9
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	90.81
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	90.81
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	90.54
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	90.37
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	90.27
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	90.25
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	89.84
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	89.75
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	89.75
4diq_A	489	Lysine-specific demethylase NO66; structural genom	89.74
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	89.32
1yll_A	200	PA5104, conserved hypothetical protein; structural	89.08
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	88.84
2ypd_A	392	Probable JMJC domain-containing histone demethyla	88.52
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	88.18
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	88.09
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	87.94
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	87.81
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	87.73
3g7d_A	443	PHPD; non heme Fe(II) dioxygenase, cupin, biosynth	86.7
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	86.34
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	85.95
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	84.76
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	84.38
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	83.62
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	83.56
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	83.02
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	82.88
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	82.39
3g7d_A	443	PHPD; non heme Fe(II) dioxygenase, cupin, biosynth	81.89
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	81.38
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	81.13
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	81.12
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	80.97
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	80.91
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	80.87
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	80.55
2ypd_A	392	Probable JMJC domain-containing histone demethyla	80.53

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=100.00  E-value=1.4e-84  Score=580.00  Aligned_cols=258  Identities=83%  Similarity=1.360  Sum_probs=251.8

Q ss_pred             CcccccCCCCCCcccccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCC
Q 025000            1 MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP   80 (259)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~   80 (259)
                      +||||+||+++++||++++++|||+++++||+|+|+++|.+.+|+|+++++++|++|.+|+.|++++++++||++++.|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~~avI~~~~iv~s~lPg~~~~~~~vL~sP~~G~~f~~~lv~l~PGg~s~~~~   87 (266)
T 4e2q_A            8 IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPP   87 (266)
T ss_dssp             TTGGGTSCSSCGGGGTTSTTCCCCEECSSEEEECGGGCCCEECTTSSSEEEEEEECGGGTCSSEEEEEEECSSEECCCCC
T ss_pred             cchhccCcccChhhhhcccCcccEEEEcCeEEECccceEEeeCCCCcCEEEEEEcCCCCCCcEEEEEEEECcCCcCCCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999987788


Q ss_pred             CCceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCCCcceeeccCCCCCCcc
Q 025000           81 HDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLE  159 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~  159 (259)
                      |++|||+|||+|++++++ + |++++|++||++|||++.+|+++|+++|+++|++++|+|++|.+|.++++|++|+++++
T Consensus        88 h~~EEfiyVleG~l~l~l-~~g~~~~L~~Gds~y~p~~~~H~~~N~~~Ar~l~V~k~y~~~~g~~p~~~v~~~~dv~~~~  166 (266)
T 4e2q_A           88 QDIERLIFVVEGAVTLTN-TSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLE  166 (266)
T ss_dssp             TTEEEEEEEEEECEEEEC---CCCEEECTTEEEEECTTCCCEEEESSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCBC
T ss_pred             CCCeEEEEEEEEEEEEEE-CCCcEEEEcCCCEEEECCCCCEEEEeCCCEEEEEEEeEeeeCCCCCCceeeCcHhHCCCcc
Confidence            999999999999999999 8 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEE
Q 025000          160 TPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYA  239 (259)
Q Consensus       160 ~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~  239 (259)
                      ++|+++++|+|+|++++++|+||+|||+||+++|+||||+|||++|||+|+|+|++||+|++|++||+|||+|||+|||+
T Consensus       167 ~~g~~~~~r~l~p~~~~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~~~~V~~GD~i~~~~~~~h~~~  246 (266)
T 4e2q_A          167 TPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYA  246 (266)
T ss_dssp             CTTCCSEEEESSCCSTTCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEE
T ss_pred             cCCCcEEEEEccCcccccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCEEEEecCCCEEEECCCCcEEEE
Confidence            99877789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCccEEEEEEeecCCCCC
Q 025000          240 ALGKTRTRYLLYKDVNRNPL  259 (259)
Q Consensus       240 n~G~e~~~fi~~k~~nr~~~  259 (259)
                      |+|++||+||+|||||||||
T Consensus       247 n~G~e~~~yl~ykd~nr~~~  266 (266)
T 4e2q_A          247 ALGKTRSRYLLYKDVNRNPL  266 (266)
T ss_dssp             EESSSCEEEEEEEECSSCCC
T ss_pred             eCCCCCEEEEEEccccCCCC
Confidence            99999999999999999997

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=100.00  E-value=2.2e-61  Score=426.75  Aligned_cols=241  Identities=40%  Similarity=0.736  Sum_probs=229.2

Q ss_pred             ccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecC--CCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECE
Q 025000           16 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGS   93 (259)
Q Consensus        16 ~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp--~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~   93 (259)
                      +++++.+||+++++++++++++.+.+.+|.|++++.++|++|  ..++.|++++++++||+....|.  +|||+|||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~   78 (246)
T 1sfn_A            1 MKHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQATESV--YQRFAFVLSGE   78 (246)
T ss_dssp             CGGGTCCSCEEETTEEEECGGGCCCBCCTTSTTCEEEEEECTTSTTCCSSEEEEEEECTTCEEECCS--SEEEEEEEEEE
T ss_pred             CCcccCccEEeecCeEEECchhcEEecCCCccCCEEEEEecCCCCCCCcEEEEEEEECCCCcCCCCc--eeEEEEEEECE
Confidence            478999999999999999999999999999999999999999  77889999999999998876654  89999999999


Q ss_pred             EEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceEEEEEee
Q 025000           94 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRKLL  171 (259)
Q Consensus        94 l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~~~~~l~  171 (259)
                      +++++ +|+++.|++||++|||++.+|+++|.++++++|+.++|+|++|. +|.+++++++|++..++.| .++.+|+|+
T Consensus        79 ~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~l~v~~~y~~~~g~~~p~~~vg~~~dv~~~~~~~~~g~~~r~l~  157 (246)
T 1sfn_A           79 VDVAV-GGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLL  157 (246)
T ss_dssp             EEEEC-SSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEEEECCCCBTTBCCCCCEEEETTTCCCEETTSCTTEEEEECS
T ss_pred             EEEEE-CCEEEEECCCCEEEECCCCCEEEEeCCCEEEEEEEeeeccCCCCcCCceeeccHhhCCccccCCCCCeEEEEeC
Confidence            99999 99999999999999999999999998889999999999999997 8999999999999999976 557888899


Q ss_pred             CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          172 PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       172 p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      |++.++++.|++++|+||++++++++|.+||.+|||+|+++|++||+|++|++||++|++++++|+|+|+|+++++||+|
T Consensus       158 p~~~~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~  237 (246)
T 1sfn_A          158 PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY  237 (246)
T ss_dssp             CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEEE
T ss_pred             CCccCCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEEE
Confidence            98788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCC
Q 025000          252 KDVNRNPL  259 (259)
Q Consensus       252 k~~nr~~~  259 (259)
                      |||||||+
T Consensus       238 kd~~r~~~  245 (246)
T 1sfn_A          238 KDMNRHPL  245 (246)
T ss_dssp             EECSSCCC
T ss_pred             EecccCCC
Confidence            99999996

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=100.00  E-value=8.4e-60  Score=423.91  Aligned_cols=241  Identities=29%  Similarity=0.518  Sum_probs=224.7

Q ss_pred             cCCCCceeeeeeceEEECC---CCceeccCCCCCcceEEEEecC--CCCCcEEEEEEEecCCCcC--CCCCCCceEEEEE
Q 025000           17 DLPGFTRSVYKRDHALITP---ESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARS--ALPPHDVERFIFV   89 (259)
Q Consensus        17 ~~~~~tR~~~~~~~avi~p---e~~v~~~lp~~~~~~~~~l~sp--~~g~~f~~~~~~l~Pg~~~--~~h~~~~Eef~yV   89 (259)
                      .+++. |++.+++|+++++   ++.+.+.+|.|++++.++|++|  ..++.|++++++++||+..  +.|.|..||++||
T Consensus        18 ~~~~~-~~~~~~~~avi~~~~~~~iv~~~lp~~~~~~~~~L~~p~~~~~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~V   96 (278)
T 1sq4_A           18 ELLTD-RAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFV   96 (278)
T ss_dssp             -CCCC-CCEECSSEEEECGGGCCGGGCBCCTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEE
T ss_pred             ccccc-ceEeccceEEECCCCcccceeccCCCccCcEEEEEecCCCCCCCcEEEEEEEECCCCccCCCCcCCCceEEEEE
Confidence            45666 9999999999999   9999999999999999999999  4578999999999999876  3456889999999


Q ss_pred             EECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceE
Q 025000           90 VQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVF  165 (259)
Q Consensus        90 l~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~  165 (259)
                      |+|++++++ +|+++.|++||+++||++.+|+++|  +++++++|+.++|.+.+|. .|..++++++|++..++++ .++
T Consensus        97 l~G~l~v~v-~g~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~~~y~~~~g~~~p~~~vgn~~di~~~~~~~~~~~  175 (278)
T 1sq4_A           97 VEGELSLTL-QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGR  175 (278)
T ss_dssp             EESCEEEEE-SSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEECCCCTTCCCCCCEEEEGGGSCCEECSSGGGC
T ss_pred             EeCEEEEEE-CCEEEEECCCCEEEECCCCcEEEEECCCCCEEEEEEEeccccCCCCcCCcccccchhhcCcccCCCCCCc
Confidence            999999999 9999999999999999999999999  5689999999999999997 7999999999999999976 444


Q ss_pred             --EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          166 --QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       166 --~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                        ++|+|+|++.++++.|++++|+||+++|++|+|.+||.+|||+|+|+|++||+|++|++||++||++||+|+|+|+|+
T Consensus       176 ~~~~r~l~p~~~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~  255 (278)
T 1sq4_A          176 WSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP  255 (278)
T ss_dssp             EEEECSSCTTCTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred             eeEEEEecCCCcCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence              677888988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEeecCCCCC
Q 025000          244 TRTRYLLYKDVNRNPL  259 (259)
Q Consensus       244 e~~~fi~~k~~nr~~~  259 (259)
                      ++++||+||||||||+
T Consensus       256 ~~~~yl~~~d~nr~~~  271 (278)
T 1sq4_A          256 GRFRYLLYKDVNRHMR  271 (278)
T ss_dssp             SCEEEEEEEECSSCCC
T ss_pred             CCEEEEEEEEcCCCcc
Confidence            9999999999999985

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=100.00  E-value=1.3e-53  Score=379.42  Aligned_cols=248  Identities=28%  Similarity=0.516  Sum_probs=221.8

Q ss_pred             CCcccccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCC--CCCceEEEE
Q 025000           11 SPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIF   88 (259)
Q Consensus        11 ~~~~~~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h--~~~~Eef~y   88 (259)
                      .+.++..+++.+||+++.+++++++++.+...+|.|++++.++|++|..++.|++++++++||+....+  +++.|||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~   86 (261)
T 1rc6_A            7 VTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLY   86 (261)
T ss_dssp             --CBHHHHTCCCCEECTTSEEEECGGGSCCBCCTTEEEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEE
T ss_pred             CcCccccccccceEEeECCEEEEChhhcEEeeccCCCCcEEEEEeCCCCCCcEEEEEEEEcCCCccCCCCCCCCceEEEE
Confidence            678888999999999999999999999998889999999999999998888999999999999877543  356899999


Q ss_pred             EEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCC-ceE
Q 025000           89 VVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVF  165 (259)
Q Consensus        89 Vl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g-~~~  165 (259)
                      ||+|++++++ +|+++.|++||++|||++.+|+++|  +++++++|+.++|++.+|..|..++.+.+|+++...+| +++
T Consensus        87 Vl~G~l~~~~-~~~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~~~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~  165 (261)
T 1rc6_A           87 VISGNITAKA-EGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDV  165 (261)
T ss_dssp             EEESEEEEEE-TTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCC-------C
T ss_pred             EEEeEEEEEE-CCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEeccccCCCCCCceEEcCHHHCCcccCCCCcce
Confidence            9999999999 9999999999999999999999999  56899999999999999988999999999999988865 666


Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC-c
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-T  244 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e  244 (259)
                      ..+.|++.+.+..+.+.+++++||+.++.|.||..+|.+|||+|++.+.+||+++++++||++|++++++|+++|.|+ +
T Consensus       166 ~~~~l~~~~~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~  245 (261)
T 1rc6_A          166 ILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGE  245 (261)
T ss_dssp             EEEECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSEEEEEEEC----
T ss_pred             EEEEecCcccCCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCc
Confidence            778888877677888999999999999987777788999999999999999999999999999999999999999999 9


Q ss_pred             cEEEEEEeecCCCCC
Q 025000          245 RTRYLLYKDVNRNPL  259 (259)
Q Consensus       245 ~~~fi~~k~~nr~~~  259 (259)
                      +++||+||||||||+
T Consensus       246 ~~~~l~~~d~~r~~~  260 (261)
T 1rc6_A          246 AFSYIYSKDCNRDVE  260 (261)
T ss_dssp             CEEEEEEEECSCCCC
T ss_pred             CEEEEEEecCCCCCC
Confidence            999999999999985

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=100.00  E-value=1.8e-50  Score=361.86  Aligned_cols=248  Identities=29%  Similarity=0.560  Sum_probs=224.8

Q ss_pred             CCcccccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCC--CCCceEEEE
Q 025000           11 SPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIF   88 (259)
Q Consensus        11 ~~~~~~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h--~~~~Eef~y   88 (259)
                      .+.+..++++.+||+++.+++++++++.+...+|.|++++.++|++|..++.|++++++++||+....+  +++.|||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~   89 (274)
T 1sef_A           10 RVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVY   89 (274)
T ss_dssp             -----CCCCCCCCEEETTTEEEECGGGCCCCCCTTEEEEEEEECSCGGGTCSSEEEEEEEEEEEEECSCSSBTTEEEEEE
T ss_pred             CCCCCcccccccceEeEcCEEEEChhhcccccCCCCCCeEEEEEcCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEE
Confidence            455667899999999999999999999998899999999999999998889999999999999877543  357899999


Q ss_pred             EEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCC-ceE
Q 025000           89 VVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVF  165 (259)
Q Consensus        89 Vl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g-~~~  165 (259)
                      ||+|++++++ +|+++.|++||++|||++.+|+++|  +++++++|+.++|+|.+|..|.+++.+++|+++..+.+ .++
T Consensus        90 Vl~G~l~~~~-~~~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~~~y~~~~g~~p~~~v~~~~d~~~~~~~~~~g~  168 (274)
T 1sef_A           90 VIDGRLRVSD-GQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDV  168 (274)
T ss_dssp             EEESEEEEEC-SSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCEEGGGCTTE
T ss_pred             EEEeEEEEEE-CCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEeeeeeCCCCCCcceeCChHHCCccccCCCCCe
Confidence            9999999999 9999999999999999999999999  56899999999999999988999999999999998753 556


Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC-c
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-T  244 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e  244 (259)
                      ..++|++.+.+.++.+.+++++||+.++..|.|..+|.+|||+|++.+.+||+++++++||+++++++++|+++|.|+ +
T Consensus       169 ~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~  248 (274)
T 1sef_A          169 LLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREE  248 (274)
T ss_dssp             EEEECSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEECSSS
T ss_pred             EEEEeCCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEeCCCCC
Confidence            778888877777899999999999999874677889999999999999999999999999999999999999999999 9


Q ss_pred             cEEEEEEeecCCCCC
Q 025000          245 RTRYLLYKDVNRNPL  259 (259)
Q Consensus       245 ~~~fi~~k~~nr~~~  259 (259)
                      +++||+|||+|||++
T Consensus       249 ~~~~l~~~~~~r~~~  263 (274)
T 1sef_A          249 PLMYVYSKDANREPE  263 (274)
T ss_dssp             CEEEEEEEECSSCCC
T ss_pred             CEEEEEEEcCCCCcc
Confidence            999999999999963

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.97  E-value=6.8e-29  Score=216.12  Aligned_cols=181  Identities=14%  Similarity=0.204  Sum_probs=146.1

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEecc--
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA--  138 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~--  138 (259)
                      ..+.+.++.++||+..+.|.|..++++||++|++++++ +|+++.|++||++++|+|++|.++|.++++++++..++.  
T Consensus        35 ~~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i~~~~~~~  113 (227)
T 3rns_A           35 PNSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-ENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGDG  113 (227)
T ss_dssp             SSEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-SSCEEEEETTEEEEECSSCCEEEEESSSEEEEEEEECC---
T ss_pred             CCcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCcEEEEEEeecccc
Confidence            36788899999999888898899999999999999999 999999999999999999999999988899999977654  


Q ss_pred             c-----cCCCCcceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEE
Q 025000          139 S-----LENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY  213 (259)
Q Consensus       139 p-----~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~  213 (259)
                      .     ..+. +...+.+..|.  .++..+++..+.|...+   .+.+.+++|+||..++. |+|..++.+|||+|++.+
T Consensus       114 ~~~~~~~~~l-~~~~~~~~~d~--~~~~~g~~~~~~l~~~~---~~~~~~~~~~~G~~~~~-H~H~~~e~~~Vl~G~~~~  186 (227)
T 3rns_A          114 NMENKTLKML-ESASAFNLAEV--VEYQEGKIVSKNLVAKP---NLVMTIMSFWKGESLDP-HKAPGDALVTVLDGEGKY  186 (227)
T ss_dssp             --------------CCEESGGG--SCCCTTCEEEEEEEEET---TEEEEEEEECTTCEEEE-ECCSSEEEEEEEEEEEEE
T ss_pred             hhhhhHhhcC-CccccCcHHHc--cccCCCCEEEEEEEECC---CeEEEEEEECCCCccCC-EECCCcEEEEEEeEEEEE
Confidence            1     1121 22333344442  23333455666666432   47788999999999986 778888999999999999


Q ss_pred             EeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          214 RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       214 ~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+||+++.+++||++|++++++|++.|. .+++++|+
T Consensus       187 ~i~g~~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll  222 (227)
T 3rns_A          187 YVDGKPFIVKKGESAVLPANIPHAVEAE-TENFKMLL  222 (227)
T ss_dssp             EETTEEEEEETTEEEEECTTSCEEEECC-SSCEEEEE
T ss_pred             EECCEEEEECCCCEEEECCCCcEEEEeC-CCCEEEEE
Confidence            9999999999999999999999999994 56677765

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.96  E-value=9.3e-28  Score=210.82  Aligned_cols=191  Identities=14%  Similarity=0.137  Sum_probs=144.3

Q ss_pred             CcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEE-eCCCCcEEEEe-
Q 025000           47 TNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY-LPPNFAHSLRA-  124 (259)
Q Consensus        47 ~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~-~p~~~~H~~~N-  124 (259)
                      .++...++...    ...+.+.+++||+..+.|.|..+|++||++|++++++ +|+++.|++||++| +|+|++|+++| 
T Consensus        22 ~Gv~~~~l~~~----~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-~~~~~~l~~Gd~i~~ip~~~~H~~~n~   96 (243)
T 3h7j_A           22 NGVRQYSTVRG----DTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-GDVTRKMTALESAYIAPPHVPHGARND   96 (243)
T ss_dssp             TSCEEEEEEET----TEEEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTTCEEEECTTCCEEEEEC
T ss_pred             CCeEEEEEECC----CCEEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-CCEEEEECCCCEEEEcCCCCcEeeEeC
Confidence            45565666543    2356677799999888888889999999999999999 99999999999997 99999999999 


Q ss_pred             -CCeEEEEEEEEeccccCCC-Ccceee-ccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecC-CcccCcceeecc
Q 025000          125 -EGSATLVVFERRYASLENH-ITEQIV-GSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQP-GDFLNVKEVHYN  200 (259)
Q Consensus       125 -~~~a~~l~v~~~y~p~~g~-~p~~~v-~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~P-G~~~~~~~~H~~  200 (259)
                       +++++++++. ++...++. .|..+. .....-.  ...+  +....+    .+..+.+.+++|+| |+.++. |.|.+
T Consensus        97 ~~~~~~~l~i~-r~~~~e~~~~p~g~~~~~L~~~~--~~~~--~~~~~~----~~~~~~~~~~~~~p~g~~~~~-H~H~~  166 (243)
T 3h7j_A           97 TDQEVIAIDIK-RLKADETYTSPEDYFLDIFKTRD--LLPG--MEVTFF----VEDWVEIMLAKIPGNGGEMPF-HKHRN  166 (243)
T ss_dssp             SSSCEEEEEEE-ECCTTCCCCCCTTSEECCEECSC--SBTT--BCEEEE----EETTEEEEEEEECTTTEEEEE-ECCSS
T ss_pred             CCCcEEEEEEe-ccCccccCCCchhhhhhhccCcc--cccC--cceeee----ccceeEEEEEEECCCCCcCCC-EeCCC
Confidence             5579998885 55433321 122211 1110000  0000  000000    12235667889999 888886 78889


Q ss_pred             ceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          201 QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       201 eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      +|.+|||+|++.+.+||+++.+++||++|++++++|++.|.|++++++|..-
T Consensus       167 ~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~  218 (243)
T 3h7j_A          167 EQIGICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIF  218 (243)
T ss_dssp             EEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             cEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            9999999999999999999999999999999999999999999999988653

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.95  E-value=1.6e-26  Score=210.05  Aligned_cols=201  Identities=19%  Similarity=0.186  Sum_probs=148.1

Q ss_pred             CcceEEEEecCC-CCCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           47 TNTLGAYLITPA-MGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        47 ~~~~~~~l~sp~-~g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      .+...++|+++. .+..|.++++++.||+..+.|.|. .+|++||++|++++++ +|+++.|++||+++||++++|+++|
T Consensus        29 ~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~n  107 (337)
T 1y3t_A           29 GRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGERYLLISGDYANIPAGTPHSYRM  107 (337)
T ss_dssp             TTEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTCCEEEEE
T ss_pred             CCeEEEEEeecCCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-CCEEEEECCCCEEEECCCCcEEEEE
Confidence            456778888776 477999999999999887777666 8999999999999999 9999999999999999999999999


Q ss_pred             -CCeEEEEEEEEec----------cccCCC-Ccc---------ee----------ecc------------CCCCCCcc--
Q 025000          125 -EGSATLVVFERRY----------ASLENH-ITE---------QI----------VGS------------TDKQPLLE--  159 (259)
Q Consensus       125 -~~~a~~l~v~~~y----------~p~~g~-~p~---------~~----------v~~------------~~di~~~~--  159 (259)
                       ..+++++++..+-          .+..+. .|.         .+          +..            ...++...  
T Consensus       108 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~gv~~~~~~~~~~~~~~~~~~~l~~~~~~  187 (337)
T 1y3t_A          108 QSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVP  187 (337)
T ss_dssp             CSTTEEEEEEEETTSSTHHHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSSCC
T ss_pred             CCCCeEEEEEECCCCHHHHHHHhCcccccccCCCCCCcccCHHHHHHhHhhccEEEcCCCCccccccchhhhcCCCCCCC
Confidence             3368998884432          111111 110         00          000            00111110  


Q ss_pred             --c---CC-----ceEEEEEeeCCC-CCcceEEEEEEecC-CcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCc
Q 025000          160 --T---PG-----EVFQLRKLLPQA-VPFDFNIHIMDFQP-GDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGD  226 (259)
Q Consensus       160 --~---~g-----~~~~~~~l~p~~-~~~~~~~~~~t~~P-G~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD  226 (259)
                        +   ++     ++...+.|.+.. .+..+ +...++.| |...+. |.|. .+|.+|||+|++.+.++|+++.+++||
T Consensus       188 ~v~r~~~~~~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~p~g~~~~~-h~H~~~~e~~~vl~G~~~~~i~~~~~~l~~GD  265 (337)
T 1y3t_A          188 YVLESGEGDRLLTGDQLHRIVAAQKNTDGQF-IVVSSEGPKGDRIVD-HYHEYHTETFYCLEGQMTMWTDGQEIQLNPGD  265 (337)
T ss_dssp             EEECTTCSEEEEETTEEEEEEECGGGTTTSC-EEEEEEECSCCCCCC-EECSSCEEEEEEEESCEEEEETTEEEEECTTC
T ss_pred             EEECCCCcCEEEECCcEEEEEecccccCCcE-EEEEEEcCCCCCCCC-cCCCCCcEEEEEEeCEEEEEECCEEEEECCCC
Confidence              0   00     223456666433 33333 44556767 556665 6776 689999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeCCCccEEEEEE
Q 025000          227 VLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       227 ~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +++++++++|++.|.|+ +++||+.
T Consensus       266 ~~~ip~~~~H~~~n~~~-~~~~l~v  289 (337)
T 1y3t_A          266 FLHVPANTVHSYRLDSH-YTKMVGV  289 (337)
T ss_dssp             EEEECTTCCEEEEECSS-SEEEEEE
T ss_pred             EEEECCCCeEEEEECCC-CeEEEEE
Confidence            99999999999999998 8998876

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.93  E-value=2e-24  Score=198.83  Aligned_cols=204  Identities=15%  Similarity=0.171  Sum_probs=150.8

Q ss_pred             cceEEEEecCCC--CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEc--CC--cEEEEeCCcEEEeCCCCcE
Q 025000           48 NTLGAYLITPAM--GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNA--SG--VSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        48 ~~~~~~l~sp~~--g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~--~g--e~~~L~~Gd~i~~p~~~~H  120 (259)
                      +..++.+.++..  ...+.+.++++.||+..+.|.|. .+|++||++|++++++.  +|  +++.|++||+++||+|.+|
T Consensus        35 ~G~~~~~~~~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H  114 (361)
T 2vqa_A           35 GGTTKQVGTYNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGH  114 (361)
T ss_dssp             TEEEEEESTTTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTCEE
T ss_pred             CceEEEeChhhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeE
Confidence            344455555544  24688999999999877777566 89999999999999982  23  5789999999999999999


Q ss_pred             EEEe--CCeEEEEEEEEeccccC---------------------------------C-CC--------cce---------
Q 025000          121 SLRA--EGSATLVVFERRYASLE---------------------------------N-HI--------TEQ---------  147 (259)
Q Consensus       121 ~~~N--~~~a~~l~v~~~y~p~~---------------------------------g-~~--------p~~---------  147 (259)
                      .++|  +++++++++.....+.+                                 . ..        |..         
T Consensus       115 ~~~n~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~~i~~~~~~p~~~~~~~~~~~  194 (361)
T 2vqa_A          115 SIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQGQ  194 (361)
T ss_dssp             EEEECSSSCEEEEEEESSTTCCTTSSEEHHHHHHTSCHHHHHHHHTCCHHHHTTSCSSCCCEECSSCCCCCGGGCCCSSC
T ss_pred             EEEeCCCCCEEEEEEECCCCccccceecHhHHHHhCCHHHHHHHhCcCHHHHHhccccCceEEeCCCCCCccccccccCc
Confidence            9999  35899998866653321                                 0 00        000         


Q ss_pred             -------eeccCCCCCCc-ccCCceEEEEEeeCCCC-C-cceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEe-
Q 025000          148 -------IVGSTDKQPLL-ETPGEVFQLRKLLPQAV-P-FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRL-  215 (259)
Q Consensus       148 -------~v~~~~di~~~-~~~g~~~~~~~l~p~~~-~-~~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~-  215 (259)
                             ++.+..+.+.. ...|+  .++.+++.+. . ..+.+.+++++||+.++. |.|.. +|.+|||+|++.+.+ 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~gg--~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~~-H~H~~~~E~~~Vl~G~~~~~v~  271 (361)
T 2vqa_A          195 TAKIEVPHTHNLLGQQPLVSLGGN--ELRLASAKEFPGSFNMTGALIHLEPGAMRQL-HWHPNADEWQYVLDGEMDLTVF  271 (361)
T ss_dssp             CCBCCSCCEEECTTSCCSEEETTE--EEEEECTTTCTTSTTCEEEEEEECTTCEEEE-EECSSCCEEEEEEESCEEEEEE
T ss_pred             CCCCCcceEeccccCCCcccCCCc--eEEEEehhhCcCcccceEEEEEECCCccccc-ccCCCCCEEEEEEeCEEEEEEE
Confidence                   00001111111 01222  3445554332 2 368888999999999987 66665 899999999999999 


Q ss_pred             --CCE--EEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          216 --GDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       216 --~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                        ||+  ++.+++||+++++++++|++.|.|+++++||+...-
T Consensus       272 ~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~  314 (361)
T 2vqa_A          272 ASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFND  314 (361)
T ss_dssp             CSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESS
T ss_pred             cCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECC
Confidence              898  999999999999999999999999999999998753

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.93  E-value=1.7e-24  Score=201.13  Aligned_cols=202  Identities=15%  Similarity=0.181  Sum_probs=149.5

Q ss_pred             ceEEEEecCCC--CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc--CCc--EEEEeCCcEEEeCCCCcEEE
Q 025000           49 TLGAYLITPAM--GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGV--SSKLMVDSYTYLPPNFAHSL  122 (259)
Q Consensus        49 ~~~~~l~sp~~--g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~--~ge--~~~L~~Gd~i~~p~~~~H~~  122 (259)
                      ..++.+.+...  ...+.+.++++.||+..+.|.|..+|++||++|++++++.  +|+  ++.|++||+++||+|..|.+
T Consensus        63 G~~~~~~~~~lp~~~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~  142 (385)
T 1j58_A           63 GYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSI  142 (385)
T ss_dssp             EEEEEECTTTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEE
T ss_pred             cEEEEeccccCcccCceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCCeEEE
Confidence            34455554443  2479999999999997777877789999999999999982  345  67999999999999999999


Q ss_pred             Ee-CCeEEEEEEEEecccc--C--------------------C-----------------------------------CC
Q 025000          123 RA-EGSATLVVFERRYASL--E--------------------N-----------------------------------HI  144 (259)
Q Consensus       123 ~N-~~~a~~l~v~~~y~p~--~--------------------g-----------------------------------~~  144 (259)
                      +| ..+++++++...-...  .                    +                                   ..
T Consensus       143 ~n~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~evla~~~~vs~~~~~~l~~~~~~i~~~~~p~~l~~~~~~~~~~~~  222 (385)
T 1j58_A          143 QALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEV  222 (385)
T ss_dssp             EEEEEEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCC
T ss_pred             EECCCCEEEEEEECCCCccccchhhhhhhhhcccHHHHHHHhCCCHHHHHhcccccceEeccCCCCccccccccCCCCCC
Confidence            99 3356776643221000  0                    0                                   00


Q ss_pred             cceeeccCCCCCCcccCCceEEEEEeeCCCCC--cceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEeC-----
Q 025000          145 TEQIVGSTDKQPLLETPGEVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLG-----  216 (259)
Q Consensus       145 p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~--~~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~-----  216 (259)
                      |..++.++.+.+....+++  ..+.+++.+..  ..+.+..++++||+.++. |.|.. +|.+|||+|++.+.++     
T Consensus       223 ~~~~v~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~pG~~~~~-h~H~~~~E~~~Vl~G~~~~~i~~~~g~  299 (385)
T 1j58_A          223 PYPFTYRLLEQEPIESEGG--KVYIADSTNFKVSKTIASALVTVEPGAMREL-HWHPNTHEWQYYISGKARMTVFASDGH  299 (385)
T ss_dssp             SSCSEEEGGGSCCEECSSE--EEEEESTTTSTTCCSCEEEEEEECTTCEEEE-EECSSSCEEEEEEESEEEEEEEEETTE
T ss_pred             CCCeeeecccCCCeeCCCc--eEEEeecccCCcccceEEEEEEECCCcccCc-eeCCCCCEEEEEEeCeEEEEEEcCCCc
Confidence            1112222223222222333  34566665443  478899999999999987 66666 8999999999999998     


Q ss_pred             CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          217 DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       217 g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      ++++.+++||+++++++++|++.|.|+++++||+.-.
T Consensus       300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~  336 (385)
T 1j58_A          300 ARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFK  336 (385)
T ss_dssp             EEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEES
T ss_pred             EEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEEC
Confidence            8999999999999999999999999999999998743

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.93  E-value=4.6e-24  Score=199.44  Aligned_cols=202  Identities=15%  Similarity=0.181  Sum_probs=149.6

Q ss_pred             eEEEEecCC------CCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEE-EEcCCcEEEEeCCcEEEeCCCCcEEE
Q 025000           50 LGAYLITPA------MGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAML-TNASGVSSKLMVDSYTYLPPNFAHSL  122 (259)
Q Consensus        50 ~~~~l~sp~------~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v-~v~~ge~~~L~~Gd~i~~p~~~~H~~  122 (259)
                      ++..|..|.      .+..+.+.+.+|.||+..+.|.|..+|++|||+|+..+ .+ +|+++.+++||++++|+|..|..
T Consensus       104 R~~~L~nP~~~~~~~~t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~~~~~~~GD~i~~P~g~~H~~  182 (394)
T 3bu7_A          104 RVVYLRNPQRKDVSAACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHKVELGANDFVLTPNGTWHEH  182 (394)
T ss_dssp             CCEECCCGGGGGGTCSBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEEEEECTTCEEEECTTCCEEE
T ss_pred             EEEEEeCCcccCcCccCCeeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCEEEEEcCCCEEEECcCCCEEE
Confidence            444555554      24579999999999999999987778999999999976 77 99999999999999999999999


Q ss_pred             Ee-CCeEEEEEEEEecccc----C---------CCCc----c----------ee---------------eccCCCCCC--
Q 025000          123 RA-EGSATLVVFERRYASL----E---------NHIT----E----------QI---------------VGSTDKQPL--  157 (259)
Q Consensus       123 ~N-~~~a~~l~v~~~y~p~----~---------g~~p----~----------~~---------------v~~~~di~~--  157 (259)
                      .| +++..+.|+.-...|+    +         ...|    .          .+               .-.|+++..  
T Consensus       183 ~N~~gde~l~~l~v~d~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~sP~~~y~w~~~~~~L  262 (394)
T 3bu7_A          183 GILESGTECIWQDGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEAL  262 (394)
T ss_dssp             EECTTCCCEEEEEEECHHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHH
T ss_pred             EcCCCCCCEEEEEcccchhhhhcCccccccCcccccCccCCccchhhhhcCcccccccccccCCCCCcEEecHHHHHHHH
Confidence            99 7654444442111110    0         0011    1          00               011111100  


Q ss_pred             ------cccCC-ceEEEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcE
Q 025000          158 ------LETPG-EVFQLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDV  227 (259)
Q Consensus       158 ------~~~~g-~~~~~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~  227 (259)
                            ..-++ +++.+..+-|...+   ..+.+.+.+|+||+.++. |.|.+++.+|||+|+|.+.+||+.+++++||+
T Consensus       263 ~~~~~~~~~~~~~~~~l~l~nP~~g~~~~~tl~~~~~~l~PG~~~~~-HrH~~~~v~~VleG~G~~~V~ge~~~~~~GD~  341 (394)
T 3bu7_A          263 LNYAKASDGSPYDGLILRYTNPQTGGHPMLTMGASMQMLRPGEHTKA-HRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDI  341 (394)
T ss_dssp             HHHHTTCCCBTTTBEEEEECCTTTSSCSSSSCEEEEEEECTTCBCCC-EEESSCEEEEEEECCEEEEETTEEEEECTTCE
T ss_pred             HHhhhccCcCcCCceEEEEeCCCCCCCCCCeeeEEEEEECCCCcCCC-cccCCcEEEEEEeCeEEEEECCEEEEEeCCCE
Confidence                  00011 33333333465432   467889999999999997 67778899999999999999999999999999


Q ss_pred             EEeCCCCceeEEeCC-CccEEEEEEee
Q 025000          228 LWMAPFVPQWYAALG-KTRTRYLLYKD  253 (259)
Q Consensus       228 i~~~~~~~H~~~n~G-~e~~~fi~~k~  253 (259)
                      ++++++.+|++.|+| ++++.+|++.|
T Consensus       342 ~~iP~g~~H~~~N~g~~e~~~ll~i~D  368 (394)
T 3bu7_A          342 FCVPAWTWHEHCNTQERDDACLFSFND  368 (394)
T ss_dssp             EEECTTCCEEEEECCSSCCEEEEEEES
T ss_pred             EEECCCCeEEeEeCCCCCCeEEEEeeC
Confidence            999999999999999 89999999976

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.91  E-value=7.1e-23  Score=189.38  Aligned_cols=189  Identities=11%  Similarity=0.100  Sum_probs=142.9

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEE-EEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEec
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAML-TNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRY  137 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v-~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y  137 (259)
                      ..+.+.+++++||+..+.|.|..+|++||++|++++ .+ +|+++.|++||++++|++.+|.++|  +++++++++...-
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v-~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~p  176 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAV-DGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLP  176 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEE-TTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECHH
T ss_pred             CcEEEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEE-CCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECch
Confidence            368899999999998888878889999999999999 88 9999999999999999999999999  4578888774321


Q ss_pred             ----------cccCCC-Cc----c-----------------------eeeccCCCCC---------CcccCCceEEEEEe
Q 025000          138 ----------ASLENH-IT----E-----------------------QIVGSTDKQP---------LLETPGEVFQLRKL  170 (259)
Q Consensus       138 ----------~p~~g~-~p----~-----------------------~~v~~~~di~---------~~~~~g~~~~~~~l  170 (259)
                                +..+.. .|    .                       .+.-.|.+..         ..+..-.+...+.+
T Consensus       177 ~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~sp~~~y~~~~~~~~l~~~~~~~~~~~~~G~~~~~~  256 (354)
T 2d40_A          177 LVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYV  256 (354)
T ss_dssp             HHHHHTCCCEEECC--CCCCCSCTTTHHHHHSSSEECSSCCCCSSCSCCEECHHHHHHHHHHHHTTSCCBTTTBEEEEEC
T ss_pred             hHhhcCceeeecCccccCcCcCCcchhhhhhccCCCCccccccCCCcceeccHHHHHHHHHhhhhccccCCCCCeEEEEe
Confidence                      000000 00    0                       0000111100         00000122344445


Q ss_pred             eCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          171 LPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       171 ~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                      .|...+   ..+.+....|+||+..+. |.|..++.+||++|+|.+++||+.+++++||++++|++++|++.|+  +++.
T Consensus       257 np~t~~~~~~ti~~~~~~l~pG~~~~~-H~h~~~ev~~v~~G~g~~~v~~~~~~~~~GD~~~vP~~~~H~~~n~--e~~~  333 (354)
T 2d40_A          257 NPVTGGYPMPSMGAFLQLLPKGFASRV-ARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTT--QDSV  333 (354)
T ss_dssp             CTTTSSCSSSSCEEEEEEECTTCBCCC-BEESSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEEEE--EEEE
T ss_pred             CCCcCCCCCCcceeEEEEECCCCCCCc-eecCCcEEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCeEEEEeC--CCEE
Confidence            565332   367788899999999987 7788889999999999999999999999999999999999999994  8899


Q ss_pred             EEEEee
Q 025000          248 YLLYKD  253 (259)
Q Consensus       248 fi~~k~  253 (259)
                      +|++-|
T Consensus       334 l~~~~d  339 (354)
T 2d40_A          334 LFSFSD  339 (354)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            999865

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.90  E-value=2.1e-22  Score=185.91  Aligned_cols=199  Identities=13%  Similarity=0.139  Sum_probs=141.5

Q ss_pred             ceEEEEecCC-CCCcEEEEEEEecCCCcCC---CCCCC-ceEEEEEEECEEEEEEcCC-----cEEEEeCCcEEEeCCCC
Q 025000           49 TLGAYLITPA-MGSHFVMYLANMQENARSA---LPPHD-VERFIFVVQGSAMLTNASG-----VSSKLMVDSYTYLPPNF  118 (259)
Q Consensus        49 ~~~~~l~sp~-~g~~f~~~~~~l~Pg~~~~---~h~~~-~Eef~yVl~G~l~v~v~~g-----e~~~L~~Gd~i~~p~~~  118 (259)
                      ..+++++++. .+..|.++ .++.|++...   .|.|. .+|++|||+|++++++ ++     +++.|++||+++||++.
T Consensus        33 ~~~~~l~~~~~~~~~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v-~~~~g~~~~~~L~~GD~v~ip~g~  110 (350)
T 1juh_A           33 QLYRFYVTGPSSGYAFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWA-QSGNETQQTRVLSSGDYGSVPRNV  110 (350)
T ss_dssp             EEEEEEECHHHHTTSCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEE-EETTSCCEEEEEETTCEEEECTTE
T ss_pred             ceEEEEecCCCCCCcEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEE-CCcCCceEEEEECCCCEEEECCCC
Confidence            3456666654 46678888 5666776554   67554 8999999999999999 88     89999999999999999


Q ss_pred             cEEEEe-CCeEEEEEEEEecc----------ccC----C-CCc------------ceeec--------------------
Q 025000          119 AHSLRA-EGSATLVVFERRYA----------SLE----N-HIT------------EQIVG--------------------  150 (259)
Q Consensus       119 ~H~~~N-~~~a~~l~v~~~y~----------p~~----g-~~p------------~~~v~--------------------  150 (259)
                      +|+++| ....+++++..+-.          +.+    + ..|            ..+..                    
T Consensus       111 ~H~~~n~~~~~~~l~v~~p~~~~~~f~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  190 (350)
T 1juh_A          111 THTFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTV  190 (350)
T ss_dssp             EEEEEECSTTEEEEEEEESSCTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCB
T ss_pred             cEEEEeCCCCCEEEEEEcCccHHHHHHHhccccccccccccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhh
Confidence            999999 22348888754421          100    0 000            11100                    


Q ss_pred             --------cCCCCCCc-------cc---C--C--------ceEEEEEeeC-CCCCc-ceEEEEEEecCC---cccCccee
Q 025000          151 --------STDKQPLL-------ET---P--G--------EVFQLRKLLP-QAVPF-DFNIHIMDFQPG---DFLNVKEV  197 (259)
Q Consensus       151 --------~~~di~~~-------~~---~--g--------~~~~~~~l~p-~~~~~-~~~~~~~t~~PG---~~~~~~~~  197 (259)
                              .|.+-|..       ++   .  |        +.+.+|.|+. +.... .+.|+.++++++   +.++ +|+
T Consensus       191 ~~~a~~~~~w~~~~~~~l~~~~~p~~~~~~~g~~~~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~-~h~  269 (350)
T 1juh_A          191 NGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVP-TWS  269 (350)
T ss_dssp             TTEESSSSCSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCC-CBC
T ss_pred             ccccccCCccccCcccccCCCCCceEECCCccchhhcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCC-ccc
Confidence                    11111111       11   1  1        2334666663 33343 789999999994   4676 478


Q ss_pred             eccceEEEEEEceEEEEeCC-EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          198 HYNQHGLLLLEGQGIYRLGD-SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       198 H~~eh~~~il~G~g~~~~~g-~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      |.+++.+|||+|++.++++| +++.+++||+|+||+|.+|+++|.++. ..+|+.
T Consensus       270 ~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~  323 (350)
T 1juh_A          270 FPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFV  323 (350)
T ss_dssp             CSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSS-EEEEEE
T ss_pred             CCCcEEEEEEeeEEEEEECCeEEEEeCCCCEEEECCCCCEEEEecCCe-EEEEEE
Confidence            89999999999999999999 999999999999999999999999765 555554

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.84  E-value=2.6e-19  Score=165.72  Aligned_cols=200  Identities=14%  Similarity=0.124  Sum_probs=148.2

Q ss_pred             eEEEEecCCCC------CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEE-EEEcCCcEEEEeCCcEEEeCCCCcEEE
Q 025000           50 LGAYLITPAMG------SHFVMYLANMQENARSALPPHDVERFIFVVQGSAM-LTNASGVSSKLMVDSYTYLPPNFAHSL  122 (259)
Q Consensus        50 ~~~~l~sp~~g------~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~-v~v~~ge~~~L~~Gd~i~~p~~~~H~~  122 (259)
                      +..+|+.|..+      ..+.+.+.+++||+..+.|.|..++++||++|++. +.+ +|+++.+++||++++|++..|.+
T Consensus        84 r~~~l~nP~~~~~~~~t~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v-dG~~~~~~~GD~v~iP~g~~H~~  162 (368)
T 3nw4_A           84 RALGLANPGLGGNAYISPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV-NGDPVRMSRGDLLLTPGWCFHGH  162 (368)
T ss_dssp             CEEECCCTTSTTCSCSSSSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE-TTEEEEEETTCEEEECTTCCEEE
T ss_pred             EEEEEeCCCCCCcCccCCceEEEEEEECCCCccCceecccceEEEEEecceEEEEE-CCEEEEEeCCCEEEECCCCcEEe
Confidence            45567777654      46999999999999999898888999999999996 888 99999999999999999999999


Q ss_pred             Ee--CCeEEEEEEEE----------ecccc---------------------CCCCcceeeccC-C----CCCCcc-----
Q 025000          123 RA--EGSATLVVFER----------RYASL---------------------ENHITEQIVGST-D----KQPLLE-----  159 (259)
Q Consensus       123 ~N--~~~a~~l~v~~----------~y~p~---------------------~g~~p~~~v~~~-~----di~~~~-----  159 (259)
                      .|  ++++.++.+..          .|+..                     ++.+|......- .    ..|+..     
T Consensus       163 ~N~gde~l~~l~v~D~Pl~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~sP~~~ypw~~~~~aL  242 (368)
T 3nw4_A          163 MNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRAL  242 (368)
T ss_dssp             EECSSSCEEEEEEECHHHHHHHTCCCEEECCSSCSCCCCCSSCHHHHHHCSTTCCCGGGCSCCSSCSCCEECHHHHHHHH
T ss_pred             EeCCCCCeEEEEecchHHHhhcCceeeecccccccccccccCCcccchhhccccccccccCCCCCCCceecCHHHHHHHH
Confidence            99  45666654320          01100                     011111000000 0    011111     


Q ss_pred             -----c--CC-----c-eEE-EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEc
Q 025000          160 -----T--PG-----E-VFQ-LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV  222 (259)
Q Consensus       160 -----~--~g-----~-~~~-~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v  222 (259)
                           +  .|     . ++. ++..-|...+   ..+.+....|.||.+... |.|..+++|+|++|+|.+.+||+..++
T Consensus       243 ~~~~~l~~~~~~~~~~~g~~~~~y~NP~tg~~~~pti~~~~~~L~pG~~t~~-hRht~s~Vy~V~eG~G~~~I~~~~~~w  321 (368)
T 3nw4_A          243 TEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETAT-RNEVGSTVFQVFEGAGAVVMNGETTKL  321 (368)
T ss_dssp             HHHHHHHHTTCSCSSBTTEEEEECBCTTTSSBSSSSCEEEEEEECTTCBCCC-EEESSCEEEEEEESCEEEEETTEEEEE
T ss_pred             HhhhhhhhccCCCcccCceEEEEEeCCCCCCCcchhHHhheEEECCCCccCC-eeccccEEEEEEeCcEEEEECCEEEEe
Confidence                 0  01     1 333 3333465443   468888999999999986 788888999999999999999999999


Q ss_pred             cCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          223 QAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      ++||++.+|++.+|++.|.  +++.+|.+-|
T Consensus       322 ~~gD~fvvP~w~~h~~~n~--~~a~Lf~~~D  350 (368)
T 3nw4_A          322 EKGDMFVVPSWVPWSLQAE--TQFDLFRFSD  350 (368)
T ss_dssp             CTTCEEEECTTCCEEEEES--SSEEEEEEES
T ss_pred             cCCCEEEECCCCcEEEEeC--CCEEEEEEeC
Confidence            9999999999999999997  6898888876

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.77  E-value=1.1e-17  Score=159.81  Aligned_cols=73  Identities=11%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             ceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCC----EEEE--ccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGD----SWYP--VQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g----~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ++.+..++|+||+..+. |.|. ..|.+|||+|++.+.+.+    +.+.  |++||++++|+|.+|++.| |+++++|++
T Consensus       337 ~is~~~v~l~pGa~~~p-H~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~n-g~~~l~~l~  414 (476)
T 1fxz_A          337 RLSAEFGSLRKNAMFVP-HYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARS-QSDNFEYVS  414 (476)
T ss_dssp             TCCEEEEEECTTCEEEE-EEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSTTEEEEE
T ss_pred             cceEEEEEecCCceecc-eECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEe-CCCCEEEEE
Confidence            68889999999999986 7777 458899999999998865    4444  9999999999999999999 899999999


Q ss_pred             Ee
Q 025000          251 YK  252 (259)
Q Consensus       251 ~k  252 (259)
                      +.
T Consensus       415 f~  416 (476)
T 1fxz_A          415 FK  416 (476)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.75  E-value=9.5e-17  Score=151.27  Aligned_cols=189  Identities=15%  Similarity=0.155  Sum_probs=135.7

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE---cCCcEEEEeCCcEEEeCCCCcEEEEeC---CeEEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN---ASGVSSKLMVDSYTYLPPNFAHSLRAE---GSATLVVFER  135 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v---~~ge~~~L~~Gd~i~~p~~~~H~~~N~---~~a~~l~v~~  135 (259)
                      ++.+.+++++||+..++|++..+|++||++|++++.+   ++++++.|++||.++||+|..|.+.|.   ++++++.+..
T Consensus        48 ~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~  127 (416)
T 1uij_A           48 DYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAI  127 (416)
T ss_dssp             TCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEE
T ss_pred             cEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEec
Confidence            4999999999999888887789999999999999987   246789999999999999999999994   4778877754


Q ss_pred             ecc-c-------cCCCC-cceeeccCC----------------CCC-C--------------------------------
Q 025000          136 RYA-S-------LENHI-TEQIVGSTD----------------KQP-L--------------------------------  157 (259)
Q Consensus       136 ~y~-p-------~~g~~-p~~~v~~~~----------------di~-~--------------------------------  157 (259)
                      +.. |       +.|.. +..+.+...                .++ .                                
T Consensus       128 ~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~  207 (416)
T 1uij_A          128 PVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSR  207 (416)
T ss_dssp             ESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCHHHHHHHTSSCBCCCG
T ss_pred             cCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCCcccchhhhcccccCC
Confidence            321 0       11100 000000000                001 0                                


Q ss_pred             -----c----------c-c--CCceEEEEEeeCCCCC----cceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEE
Q 025000          158 -----L----------E-T--PGEVFQLRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYR  214 (259)
Q Consensus       158 -----~----------~-~--~g~~~~~~~l~p~~~~----~~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~  214 (259)
                           .          + +  .+|  .+..+.+.+.-    -++.+..+.|.||+..+. |.|.. .|.+||++|+|++.
T Consensus       208 ~g~~~~~~~~~l~~~~p~~~~~~G--~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~p-H~h~~A~Ei~~V~~G~~~v~  284 (416)
T 1uij_A          208 KTISSEDEPFNLRSRNPIYSNNFG--KFFEITPEKNPQLRDLDIFLSSVDINEGALLLP-HFNSKAIVILVINEGDANIE  284 (416)
T ss_dssp             GGGGCSSSCEETTSSCCSEECSSE--EEEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESEEEEE
T ss_pred             CCCCCcccceeccccCCCccCCCc--eEEEEChHHCccchhcCcceEEEEEcCCcEecc-eEcCCCcEEEEEEeeEEEEE
Confidence                 0          0 0  112  12333343331    247888999999999885 66664 48899999999986


Q ss_pred             eCC-----------------EEE--EccCCcEEEeCCCCceeEEeCCCccEEEEEEeecC
Q 025000          215 LGD-----------------SWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       215 ~~g-----------------~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                      +-+                 +.+  .|++||++++|.|.+|++.|+  ++++|+++++-.
T Consensus       285 ~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~  342 (416)
T 1uij_A          285 LVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINA  342 (416)
T ss_dssp             EEEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETC
T ss_pred             EEcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCC
Confidence            653                 256  999999999999999999999  689999998644

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.75  E-value=1.9e-17  Score=136.35  Aligned_cols=106  Identities=16%  Similarity=0.309  Sum_probs=94.2

Q ss_pred             ccCCCCCCcccCC------ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEcc
Q 025000          150 GSTDKQPLLETPG------EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ  223 (259)
Q Consensus       150 ~~~~di~~~~~~g------~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~  223 (259)
                      .+|++++.+.+..      .++.+|+|+..+. ..+.++.++++||+.++. |.|.++|.+|||+|++.+.+||+++.++
T Consensus        10 ~~w~~v~~~~~~~~~~~p~~g~~~~~L~~~~~-~~~~~~~~~l~pG~~~~~-H~H~~~E~~~Vl~G~~~v~v~g~~~~l~   87 (156)
T 3kgz_A           10 GRWDGVAVMPYKQTAEAPFQDVSRQLLFADPN-LACEWRYFEVDEGGYSTL-ERHAHVHAVMIHRGHGQCLVGETISDVA   87 (156)
T ss_dssp             TEETTCCCEECCCCSSCSSEEEEEEEEECCTT-CSEEEEEEEEEEEEECCC-BBCSSCEEEEEEEEEEEEEETTEEEEEE
T ss_pred             CCccccchhhcccCCCCCcCCeEEEEEEcCCC-CcEEEEEEEECCCCccCc-eeCCCcEEEEEEeCEEEEEECCEEEEeC
Confidence            4688998888742      3678888886553 678888999999999997 7888899999999999999999999999


Q ss_pred             CCcEEEeCCCCceeEEeCCCccEEEEEEeecCCC
Q 025000          224 AGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN  257 (259)
Q Consensus       224 ~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr~  257 (259)
                      +||++|++++++|++.|.|+++++||+.-...||
T Consensus        88 ~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~~d  121 (156)
T 3kgz_A           88 QGDLVFIPPMTWHQFRANRGDCLGFLCVVNAARD  121 (156)
T ss_dssp             TTCEEEECTTCCEEEECCSSSCEEEEEEEESSCC
T ss_pred             CCCEEEECCCCcEEeEeCCCCCEEEEEEEeCCCC
Confidence            9999999999999999999999999999988887

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.74  E-value=5.7e-17  Score=153.48  Aligned_cols=204  Identities=14%  Similarity=0.109  Sum_probs=142.0

Q ss_pred             CcceEEEEec--C---CC-CCc-EEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc-C--CcEEEEeCCcEEEeCC
Q 025000           47 TNTLGAYLIT--P---AM-GSH-FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GVSSKLMVDSYTYLPP  116 (259)
Q Consensus        47 ~~~~~~~l~s--p---~~-g~~-f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~--ge~~~L~~Gd~i~~p~  116 (259)
                      ++..++++..  +   .+ +.. +.+.+++|+||+..++|++..+|++||++|++.+.+. .  ++++.|++||.++||+
T Consensus        38 e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~  117 (434)
T 2ea7_A           38 EWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPA  117 (434)
T ss_dssp             TTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECT
T ss_pred             CCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECC
Confidence            3455566533  2   22 344 9999999999998888877899999999999999872 1  5789999999999999


Q ss_pred             CCcEEEEeC---CeEEEEEEEEec-cc-------cCCC-CcceeeccCC----------------CCC-C----------
Q 025000          117 NFAHSLRAE---GSATLVVFERRY-AS-------LENH-ITEQIVGSTD----------------KQP-L----------  157 (259)
Q Consensus       117 ~~~H~~~N~---~~a~~l~v~~~y-~p-------~~g~-~p~~~v~~~~----------------di~-~----------  157 (259)
                      |..|.+.|.   ++++++.+...- .|       +.|. .|..+.+...                .++ .          
T Consensus       118 G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~  197 (434)
T 2ea7_A          118 GTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEE  197 (434)
T ss_dssp             TCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------
T ss_pred             CccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhcCCHHHHHHHhCCCHHHHHhhhhccccccccccc
Confidence            999999994   367777664321 11       1110 0000000000                001 0          


Q ss_pred             --------------------------------c----------c-c--CCceEEEEEeeCCCCC----cceEEEEEEecC
Q 025000          158 --------------------------------L----------E-T--PGEVFQLRKLLPQAVP----FDFNIHIMDFQP  188 (259)
Q Consensus       158 --------------------------------~----------~-~--~g~~~~~~~l~p~~~~----~~~~~~~~t~~P  188 (259)
                                                      .          + +  +||  .++.+.+.+..    -++.+..+.|.|
T Consensus       198 ~q~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~~~~gG--~v~~~~~~~~P~L~~l~is~a~v~l~p  275 (434)
T 2ea7_A          198 SREEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKFG--RWYEMTPEKNPQLKDLDVFISSVDMKE  275 (434)
T ss_dssp             CCCSSSEEECCHHHHHHHHTTSBCCCSSCTTCSSSCEETTSSCCSEEETTE--EEEEECTTTCHHHHHHTEEEEEEEECT
T ss_pred             ccccceEEECCcccChhhcccccccCCCCCCCcccceeeccCCCceeCCCc--EEEEEChhhCccccccCcceEEEEEcC
Confidence                                            0          0 0  122  23334444432    247888999999


Q ss_pred             CcccCcceeecc-ceEEEEEEceEEEEeCCE----------------EE--EccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          189 GDFLNVKEVHYN-QHGLLLLEGQGIYRLGDS----------------WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       189 G~~~~~~~~H~~-eh~~~il~G~g~~~~~g~----------------~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      |+..+. |.|.. .|.+||++|+|++.+-+.                .+  .|++||++++|.|.+|++.|+  +++.|+
T Consensus       276 G~m~~p-H~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v  352 (434)
T 2ea7_A          276 GALLLP-HYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFF  352 (434)
T ss_dssp             TEEEEE-EEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEE
T ss_pred             Ceeecc-EEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEE
Confidence            999975 67764 488999999999977643                45  899999999999999999999  589999


Q ss_pred             EEeecC
Q 025000          250 LYKDVN  255 (259)
Q Consensus       250 ~~k~~n  255 (259)
                      ++++-.
T Consensus       353 ~f~~~~  358 (434)
T 2ea7_A          353 AFGINA  358 (434)
T ss_dssp             EEEETC
T ss_pred             EEECCC
Confidence            998644

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.74  E-value=1.1e-16  Score=149.85  Aligned_cols=188  Identities=11%  Similarity=0.069  Sum_probs=137.1

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE---cCCcEEEEeCCcE------EEeCCCCcEEEEeC---CeEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN---ASGVSSKLMVDSY------TYLPPNFAHSLRAE---GSAT  129 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v---~~ge~~~L~~Gd~------i~~p~~~~H~~~N~---~~a~  129 (259)
                      ++.+.+++++||+...+|.|..+|++||++|++.+.+   ++.+++.|++||.      ++||+|..|.+.|.   ++++
T Consensus        51 ~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~  130 (397)
T 2phl_A           51 DYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLR  130 (397)
T ss_dssp             TCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEE
T ss_pred             cEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeE
Confidence            4999999999998877777899999999999999998   2346789999999      99999999999993   3677


Q ss_pred             EEEEEEecc-c------cCCCC-cceeeccCC----------------CCC-Cc--------------------------
Q 025000          130 LVVFERRYA-S------LENHI-TEQIVGSTD----------------KQP-LL--------------------------  158 (259)
Q Consensus       130 ~l~v~~~y~-p------~~g~~-p~~~v~~~~----------------di~-~~--------------------------  158 (259)
                      ++.+...-. |      +.|.. +..+...+.                .++ .+                          
T Consensus       131 ~i~~~~~~~~~~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~~~~~  210 (397)
T 2phl_A          131 IIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHAKSS  210 (397)
T ss_dssp             EEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHHHHHTC
T ss_pred             EEEeecCCCCccceeeeccCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCcccchhhhccCCCc
Confidence            776643211 1      11110 000000000                001 00                          


Q ss_pred             ---------c-c--CCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCE-------
Q 025000          159 ---------E-T--PGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDS-------  218 (259)
Q Consensus       159 ---------~-~--~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~-------  218 (259)
                               + +  .+|.  ++.+.+.+  .++.+..++|+||+..+. |.|. ..|.+||++|+|++.+-+.       
T Consensus       211 ~~~~l~~~~p~~~n~~G~--~~~v~~~~--l~is~a~v~l~pG~~~~P-H~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~  285 (397)
T 2phl_A          211 SRKSLSKQDNTIGNEFGN--LTERTDNS--LNVLISSIEMEEGALFVP-HYYSKAIVILVVNEGEAHVELVGPKGNKETL  285 (397)
T ss_dssp             ---------CEEEETTEE--EEEEEETT--TTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESEEEEEEEEECC--CCS
T ss_pred             ccccccccCCcccCCCCe--EEEEeecc--CCeeEEEEEEcCCcEeee-eEcCCCCEEEEEEeeeEEEEEEeccccccCC
Confidence                     1 0  1232  23334444  678899999999999886 6776 4488999999999988765       


Q ss_pred             -----EEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          219 -----WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       219 -----~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                           ...|++||++++|.|.+|++.|+|  +++|+++++-.+
T Consensus       286 g~~~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~  326 (397)
T 2phl_A          286 EYESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINAN  326 (397)
T ss_dssp             CEEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCT
T ss_pred             CceEEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECCCC
Confidence                 678999999999999999999996  899999977543

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.72  E-value=5e-16  Score=147.85  Aligned_cols=190  Identities=14%  Similarity=0.162  Sum_probs=134.8

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc-CC------------------------cEEEEeCCcEEEeC
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-SG------------------------VSSKLMVDSYTYLP  115 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~g------------------------e~~~L~~Gd~i~~p  115 (259)
                      +++.+.+++|+||+-..+|.|...|++||++|++.+.+. .|                        +.+.|++||.++||
T Consensus        61 ~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iP  140 (459)
T 2e9q_A           61 AGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVP  140 (459)
T ss_dssp             HTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEEC
T ss_pred             CceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEEC
Confidence            578899999999998888877889999999999999882 12                        35699999999999


Q ss_pred             CCCcEEEEe--CCeEEEEEEEEecc---ccC---------CCC-c---------------------ceeeccCC------
Q 025000          116 PNFAHSLRA--EGSATLVVFERRYA---SLE---------NHI-T---------------------EQIVGSTD------  153 (259)
Q Consensus       116 ~~~~H~~~N--~~~a~~l~v~~~y~---p~~---------g~~-p---------------------~~~v~~~~------  153 (259)
                      +|++|.+.|  +++++++.+...--   +++         |.. +                     ..+++..+      
T Consensus       141 aG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~  220 (459)
T 2e9q_A          141 AGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEE  220 (459)
T ss_dssp             TTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC------------CCCCTTTTSCHHHHHH
T ss_pred             CCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhccccccccccccccccchhhcCCHHHHHh
Confidence            999999999  45788887654221   111         110 0                     00000000      


Q ss_pred             ----------------C-----------C----CC----c---cc---------CC------------------------
Q 025000          154 ----------------K-----------Q----PL----L---ET---------PG------------------------  162 (259)
Q Consensus       154 ----------------d-----------i----~~----~---~~---------~g------------------------  162 (259)
                                      +           +    |.    .   +.         .|                        
T Consensus       221 aF~v~~~~v~kL~~~~~~~G~Iv~~~~~l~~~~P~~~~~e~~~~~~~~~~~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~  300 (459)
T 2e9q_A          221 AFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFN  300 (459)
T ss_dssp             HHTCCHHHHHHHHTTTCCSTTEEECCSSCCTTTTC------------------------CGGGSCCEEECSTTSCCSEEE
T ss_pred             hcCCCHHHHHhhhhcccCCccEEEeCCcccccCCccchhhhcccccccccccccCCccccccceeeeecccccccCCccc
Confidence                            0           0    00    0   00         00                        


Q ss_pred             --ceEEEEEeeCCCCC--c--ceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEeCC----EEEE--ccCCcEEE
Q 025000          163 --EVFQLRKLLPQAVP--F--DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD----SWYP--VQAGDVLW  229 (259)
Q Consensus       163 --~~~~~~~l~p~~~~--~--~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g----~~~~--v~~GD~i~  229 (259)
                        ++ .++.+.+.+.-  .  ++.+..+.|.||+..+. |.|... |.+||++|+|++.+-+    +.+.  |++||+++
T Consensus       301 ~~gG-~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~p-H~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v  378 (459)
T 2e9q_A          301 PRGG-RISTANYHTLPILRQVRLSAERGVLYSNAMVAP-HYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM  378 (459)
T ss_dssp             TTTE-EEEEECTTTSTTHHHHTCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred             CCCe-eEEEeccccCccccccccceEEEEeeCCcCccc-eECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence              00 11222222221  2  68889999999999985 677654 8899999999999876    5655  99999999


Q ss_pred             eCCCCceeEEeCCCccEEEEEEee
Q 025000          230 MAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       230 ~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      +|.|.+|.+.| |+++++||++++
T Consensus       379 ~P~G~~H~~~n-g~~~~~~l~~~~  401 (459)
T 2e9q_A          379 IPQNFVVIKRA-SDRGFEWIAFKT  401 (459)
T ss_dssp             ECTTCEEEEEE-EEEEEEEEEEES
T ss_pred             ECCCCEEEEEe-CCCCeEEEEEec
Confidence            99999999999 899999999975

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.72  E-value=2.9e-16  Score=150.85  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=64.8

Q ss_pred             ceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCC----EEEE--ccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGD----SWYP--VQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g----~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+.+..++|+||+..+. |.|. ..|.+|||+|++.+.+.+    +.+.  |++||++++|+|.+|++.| |+++++|++
T Consensus       371 ~is~a~v~L~PG~~~~p-H~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~  448 (510)
T 3c3v_A          371 GLSAEYGNLYRNALFVP-HYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVA  448 (510)
T ss_dssp             TCEEEEEEEETTCEEEE-EEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEE
T ss_pred             eEEEEEEEecCCceecc-eECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEE
Confidence            67889999999999986 6776 569999999999998854    4444  9999999999999999999 899999999


Q ss_pred             Ee
Q 025000          251 YK  252 (259)
Q Consensus       251 ~k  252 (259)
                      +.
T Consensus       449 f~  450 (510)
T 3c3v_A          449 FK  450 (510)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.70  E-value=1.6e-16  Score=132.13  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             eeeccCCCCCCcccCC------ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEE
Q 025000          147 QIVGSTDKQPLLETPG------EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY  220 (259)
Q Consensus       147 ~~v~~~~di~~~~~~g------~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~  220 (259)
                      .-..+|++++...++.      .++..|.|+..+. ..+.+++++++||+.++. |.|.++|.+|||+|++.+.+||+++
T Consensus        16 ~~~~~w~~v~~~~~~~~~~~p~~gv~~r~L~~~~~-~~~~~~~~~l~pG~~~~~-H~H~~~E~~~Vl~G~~~~~v~g~~~   93 (166)
T 3jzv_A           16 QSQYRWPGVDLLAYKEEGSAPFRSVTRQVLFSGNG-LTGELRYFEVGPGGHSTL-ERHQHAHGVMILKGRGHAMVGRAVS   93 (166)
T ss_dssp             CCCCCCTTSCEEECCCC-CCSCEEEEEEEEECCTT-CSEEEEEEEEEEEEECCC-BBCSSCEEEEEEEECEEEEETTEEE
T ss_pred             cCCcCcccChhhhcccCCCcccCCeEEEEEECCCC-CeEEEEEEEECCCCccCc-eeCCCcEEEEEEeCEEEEEECCEEE
Confidence            3456788998888742      4567888886553 667888999999999997 6788889999999999999999999


Q ss_pred             EccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCCC
Q 025000          221 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN  257 (259)
Q Consensus       221 ~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr~  257 (259)
                      .+++||++|+++|++|++.|.|+++++||+.-...||
T Consensus        94 ~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~~~~~d  130 (166)
T 3jzv_A           94 AVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAERD  130 (166)
T ss_dssp             EECTTCEEEECTTCCEEEECCTTSCEEEEEEEESSCC
T ss_pred             EeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEccCCC
Confidence            9999999999999999999999999999999887776

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.70  E-value=6.5e-16  Score=146.63  Aligned_cols=187  Identities=13%  Similarity=0.122  Sum_probs=132.3

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc-C--CcEEEEeCCcEEEeCCCCcEEEEeC---CeEEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GVSSKLMVDSYTYLPPNFAHSLRAE---GSATLVVFER  135 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~--ge~~~L~~Gd~i~~p~~~~H~~~N~---~~a~~l~v~~  135 (259)
                      .+.+.+++++||+..++|+|..+|++||++|++++.+. .  ++++.|++||.++||+|.+|.+.|.   ++++++++..
T Consensus        85 ~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~  164 (445)
T 2cav_A           85 DYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAI  164 (445)
T ss_dssp             TEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEE
T ss_pred             cEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEec
Confidence            49999999999998888878899999999999999871 1  3789999999999999999999993   4788887765


Q ss_pred             ecc-c-------cCCC-CcceeeccCC----------------CCCC-c-------------------------------
Q 025000          136 RYA-S-------LENH-ITEQIVGSTD----------------KQPL-L-------------------------------  158 (259)
Q Consensus       136 ~y~-p-------~~g~-~p~~~v~~~~----------------di~~-~-------------------------------  158 (259)
                      +-. |       +.|. .|..+.+...                .++. .                               
T Consensus       165 ~~~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~  244 (445)
T 2cav_A          165 TFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLSS  244 (445)
T ss_dssp             CCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCCC-------------------
T ss_pred             cCCCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCCcchhhhcccccccCCCCCCC
Confidence            221 1       1110 0111111010                0110 0                               


Q ss_pred             -----------c-c--CCceEEEEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEeC---
Q 025000          159 -----------E-T--PGEVFQLRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLG---  216 (259)
Q Consensus       159 -----------~-~--~g~~~~~~~l~p~~~~----~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~---  216 (259)
                                 + +  .+|  .+..+.+.+..    -++.+.++.|.||+..+. |.|... |..||++|+|.+.+=   
T Consensus       245 ~~~~~~l~~~~p~~~~~~G--~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~P-H~hp~A~ei~~V~~G~~~v~vv~~~  321 (445)
T 2cav_A          245 QDKPFNLRSRDPIYSNNYG--KLYEITPEKNSQLRDLDILLNCLQMNEGALFVP-HYNSRATVILVANEGRAEVELVGLE  321 (445)
T ss_dssp             -CCCEETTSSCCSEESSSE--EEEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESCEEEEEEEC-
T ss_pred             cccceeccccCCCccCCCc--eEEEeChHHCcccccCCCceEEEEeeCCceeee-EECCCCcEEEEEEeeEEEEEEEeCC
Confidence                       0 0  011  11222232221    158899999999999986 677655 778999999977653   


Q ss_pred             C---------E----EEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          217 D---------S----WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       217 g---------~----~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      +         +    ...+++||++++|.|.+|...|+  +++.|+.|+.
T Consensus       322 ~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~  369 (445)
T 2cav_A          322 QQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGV  369 (445)
T ss_dssp             ----------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEE
T ss_pred             CcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEc
Confidence            2         2    55699999999999999999999  5799999984

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.69  E-value=2.1e-16  Score=126.06  Aligned_cols=109  Identities=15%  Similarity=0.102  Sum_probs=94.5

Q ss_pred             ceeeccCCCCCCcccC--C-ceEEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEE--eCCEE
Q 025000          146 EQIVGSTDKQPLLETP--G-EVFQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGDSW  219 (259)
Q Consensus       146 ~~~v~~~~di~~~~~~--g-~~~~~~~l~p-~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~--~~g~~  219 (259)
                      .+.+.+++|+++.+..  + .++..++|+. .+....+.+..++++||+.++. |.|..+|.+|||+|++.+.  ++|+.
T Consensus         2 ~m~v~~~~~v~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~   80 (145)
T 3ht1_A            2 MMKRVHRTDVKAEIVREPGAKETTHRKLIDTPDGADRFVLTEFEVSPNGSTPP-HFHEWEHEIYVLEGSMGLVLPDQGRT   80 (145)
T ss_dssp             CCCCCCGGGSCCEECCSTTCEEEEEEEEECGGGTCCSEEEEEEEEEEEEECCC-EECSSCEEEEEEEECEEEEEGGGTEE
T ss_pred             cceEeehhhCCHhHcCCCCCCCcEEEEEEccCCCCCcEEEEEEEECCCCcCCC-ccCCCceEEEEEEeEEEEEEeECCEE
Confidence            3567889999999984  3 6677888775 4445688899999999999996 7888888899999999999  99999


Q ss_pred             EEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecC
Q 025000          220 YPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       220 ~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                      +.+++||++++++|++|++.|.|++++++++.-.-+
T Consensus        81 ~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~  116 (145)
T 3ht1_A           81 EEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE  116 (145)
T ss_dssp             EEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred             EEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence            999999999999999999999999999999876443

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.68  E-value=8.7e-16  Score=127.51  Aligned_cols=106  Identities=19%  Similarity=0.298  Sum_probs=89.0

Q ss_pred             cCCCCCCcccC--C---ceEEEEEeeCCCC---CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEc
Q 025000          151 STDKQPLLETP--G---EVFQLRKLLPQAV---PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV  222 (259)
Q Consensus       151 ~~~di~~~~~~--g---~~~~~~~l~p~~~---~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v  222 (259)
                      .|++++..++.  +   .++..++|+..+.   ...+.++.++++||+.++. |.|..+|.+|||+|++.+.++|+.+.+
T Consensus        20 ~W~~~~~~~~~~~~~~~~g~~~~~L~~~~~g~~~~~~~~~~~~l~pG~~~~~-H~H~~~E~~~Vl~G~~~~~i~~~~~~l   98 (167)
T 3ibm_A           20 RWEGTEEEAYKAEGTHFSGARRQTLVGRPAGQEAPAFETRYFEVEPGGYTTL-ERHEHTHVVMVVRGHAEVVLDDRVEPL   98 (167)
T ss_dssp             EETTCCCC---------CCEEEEEEECTTTTCCSSSEEEEEEEECTTCBCCC-BBCSSCEEEEEEESEEEEEETTEEEEE
T ss_pred             ccccceeeeccCCCCcCCCcEEEEEECCCCCCCCCcEEEEEEEECCCCCCCC-ccCCCcEEEEEEeCEEEEEECCEEEEE
Confidence            46666665542  2   3567888886544   3578899999999999997 677889999999999999999999999


Q ss_pred             cCCcEEEeCCCCceeEEeCC-CccEEEEEEeecCCC
Q 025000          223 QAGDVLWMAPFVPQWYAALG-KTRTRYLLYKDVNRN  257 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k~~nr~  257 (259)
                      ++||++|++++++|++.|.| +++++||+.-+-.||
T Consensus        99 ~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~~d  134 (167)
T 3ibm_A           99 TPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSDRD  134 (167)
T ss_dssp             CTTCEEEECTTCCEEEEEESSSCCEEEEEEEESSCC
T ss_pred             CCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCCcC
Confidence            99999999999999999999 999999999887776

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.65  E-value=1.7e-15  Score=124.41  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             CcceeeccCCCCCCcccCCceEEEEEee-CC-CCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC----
Q 025000          144 ITEQIVGSTDKQPLLETPGEVFQLRKLL-PQ-AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----  217 (259)
Q Consensus       144 ~p~~~v~~~~di~~~~~~g~~~~~~~l~-p~-~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g----  217 (259)
                      .+.+++.++++++...+...++..+.|+ +. .....+.+..++++||..++. |.|..+|.+|||+|++.+.++|    
T Consensus         4 ~~~~~v~~~~~~~~~~~~~~G~~~~~l~~~~~~g~~~~~~~~~~~~pg~~~~~-H~H~~~E~~~Vl~G~~~~~~~~~~~~   82 (163)
T 1lr5_A            4 RDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPI-HRHSCEEVFTVLKGKGTLLMGSSSLK   82 (163)
T ss_dssp             CCCCSEEEGGGSCCBCTTCTTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCE-EEESSCEEEEEEECCEEEEECCSSSS
T ss_pred             CCccEecChHHCChhhccCCCcceEEEeccccCCCCcEEEEEEEECCCCcCCC-eECCCCeEEEEEeCEEEEEECCcccc
Confidence            4678899999999999843334555554 43 334578889999999999986 6778889999999999999999    


Q ss_pred             -----EEEEccCCcEEEeCCCCceeEEeCC-CccEEEEEEee
Q 025000          218 -----SWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYKD  253 (259)
Q Consensus       218 -----~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k~  253 (259)
                           +.+.+++||++|+++|++|++.|.| +++++||+.-.
T Consensus        83 ~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~  124 (163)
T 1lr5_A           83 YPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (163)
T ss_dssp             SCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             ccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEEC
Confidence                 9999999999999999999999999 99999998754

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.65  E-value=5.9e-14  Score=122.80  Aligned_cols=172  Identities=15%  Similarity=0.121  Sum_probs=120.6

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe-ccc
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR-YAS  139 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~-y~p  139 (259)
                      ..+.+..+.+ .|.... -....+|++|||+|+++|+. +|+++++++||+++||.|..++|...++++.+++... +. 
T Consensus        45 ~~~~~G~~~~-~g~~~v-~~~p~dE~~~VleG~~~lt~-~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~~~~-  120 (238)
T 3myx_A           45 QGIAAGIVEF-GTALSV-EAYPYTEMLVMHRGSVTLTS-GTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQAS-  120 (238)
T ss_dssp             TSEEEEEEEE-CSEEEE-SSCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTCCEEEEECTTEEEEEEEECSCC-
T ss_pred             CCeEEEEEEe-cccccc-ccCCCcEEEEEEEeEEEEEC-CCeEEEEcCCCEEEECCCCEEEEEecCCeEEEEEeccCCC-
Confidence            4677777777 554332 12346899999999999998 9999999999999999999999999888988887644 22 


Q ss_pred             cCCCCcceeeccCCCCCCcc---------cCC-ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEc
Q 025000          140 LENHITEQIVGSTDKQPLLE---------TPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEG  209 (259)
Q Consensus       140 ~~g~~p~~~v~~~~di~~~~---------~~g-~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G  209 (259)
                      .++ .+..+-. -.+.+..+         ..| -..+.+.+...+ ...+..-+..-.||..+++  ++...|..|||||
T Consensus       121 ~p~-~~~~~~i-~~~~~l~P~~~p~p~~~l~G~P~~~~~~~~~~~-~g~~~~GiW~~tpG~~~~~--~~~~~E~~~ILeG  195 (238)
T 3myx_A          121 GPD-KSGITAL-DRLALLTPSSPPDPSIMISPLPQCRSNNLFEDT-ASTLRIGVWDSTPYERISR--PHKIHELMNLIEG  195 (238)
T ss_dssp             SCC-CCSEEEE-CTTCCCEEECCCCGGGBSSCCCCEEEEEEEECS-SSSCEEEEEEECCEEBCCE--ECSSCEEEEEEEC
T ss_pred             CCC-CCccEEe-cCCCCCCCCCCCChhheecCCchheeeEEEECC-CCCEEEeEEEeCCCEEECC--cCCCCEEEEEEEe
Confidence            122 2322211 11222222         244 222333343322 2345556888899997653  4456689999999


Q ss_pred             eEEEEe-CCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          210 QGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       210 ~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +..++. +|+.+.+++||.+++++|..=...-.
T Consensus       196 ~v~lt~~~G~~~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          196 RVVLSLENGSSLTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             CEEEEETTSCEEEECTTCEEEECTTCEEEEEES
T ss_pred             EEEEEeCCCCEEEECCCCEEEECCCCEEEEEEC
Confidence            999998 67889999999999999988555554

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=99.63  E-value=2.8e-14  Score=123.95  Aligned_cols=200  Identities=17%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             EEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCc
Q 025000           31 ALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDS  110 (259)
Q Consensus        31 avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd  110 (259)
                      .++.++...+...| ..+.....|............++.++||+..+.|.|.+.|.+|||+|+++  . ++  ..+.+||
T Consensus        12 v~i~~~~~~W~~~~-~~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~--d-~~--~~~~~Gd   85 (223)
T 3o14_A           12 VVIDTDQLEWRPSP-MKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ--D-EH--GDYPAGT   85 (223)
T ss_dssp             EEEEGGGSCCEECS-STTEEEEEEEEESSSSCEEEEEEEECTTEECCCEECTTCEEEEEEEEEEE--E-TT--EEEETTE
T ss_pred             EEeeCccCCceeCC-CCCEEEEEeecCCCccccEEEEEEECCCCCcccccCCCCEEEEEEEeEEE--E-CC--eEECCCe
Confidence            34444444444433 24455566644332233456789999999999998877888899999976  3 33  4799999


Q ss_pred             EEEeCCCCcEEEEeCCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCc
Q 025000          111 YTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGD  190 (259)
Q Consensus       111 ~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~  190 (259)
                      +++.|+|..|....++.|.+++....+.+.+-  +. +  +.+...+.+-..+++....|...+   .-.++...++||.
T Consensus        86 ~~~~P~g~~H~p~a~~gc~~~vk~~~~~~~d~--~~-v--~~~~~~W~~~~~~Gv~~~~L~~~~---~E~v~l~r~~~G~  157 (223)
T 3o14_A           86 YVRNPPTTSHVPGSAEGCTIFVKLWQFDPADR--TQ-F--SKNMEAELGAPVEGISTSLLHEDE---RETVTHRKLEPGA  157 (223)
T ss_dssp             EEEECTTCEECCEESSCEEEEEEESCSCTTCC--BC-E--EEETTTTCCCCBTTEEEEEEEECS---SCEEEEEEECTTC
T ss_pred             EEEeCCCCccccEeCCCCEEEEEecCCCCCcc--cc-c--ccchhcccccCCCCeEEEEEecCC---CcEEEEEEECCCC
Confidence            99999999999887777888888777765442  32 2  444555555422334444454433   2356788899999


Q ss_pred             ccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          191 FLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       191 ~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      .++. |.| ..+++|||+|+  +.+++.  ...+||.+..|++..|...+ |++.+. |+.|
T Consensus       158 ~~~~-~~h-gG~EilVL~G~--~~d~~~--~~~~GsWlR~P~gs~h~~~a-g~~g~~-i~~k  211 (223)
T 3o14_A          158 NLTS-EAA-GGIEVLVLDGD--VTVNDE--VLGRNAWLRLPEGEALSATA-GARGAK-IWMK  211 (223)
T ss_dssp             EEEE-CCS-SCEEEEEEEEE--EEETTE--EECTTEEEEECTTCCEEEEE-EEEEEE-EEEE
T ss_pred             ccCC-CCC-CcEEEEEEEeE--EEECCc--eECCCeEEEeCCCCccCcEE-CCCCeE-EEEE
Confidence            9987 456 44557999998  557775  56799999999999999998 677766 5555

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3e-15  Score=124.37  Aligned_cols=74  Identities=12%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             CcEEEEEEEecC-CCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEE
Q 025000           61 SHFVMYLANMQE-NARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  135 (259)
Q Consensus        61 ~~f~~~~~~l~P-g~~~~~-h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~  135 (259)
                      ..|++++++|+| |++... ++|.+||++|||+|++++++ +|+++.|++||++|||++.+|+|+|  +.+|+++|+..
T Consensus        86 ~~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl-~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~Vq~  163 (166)
T 2vpv_A           86 EYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV-CKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQV  163 (166)
T ss_dssp             CSCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred             ccceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE-CCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEEEE
Confidence            478888999999 655543 47889999999999999999 9999999999999999999999999  66899999854

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.59  E-value=2.1e-14  Score=126.01  Aligned_cols=94  Identities=9%  Similarity=0.139  Sum_probs=82.5

Q ss_pred             cCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcE
Q 025000           42 PLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        42 ~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~-h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H  120 (259)
                      .+++-++...+.|..+..+..+.+.+++++||++.+. ++|..||++|||+|++++++ +|+++.|++||+++++++.+|
T Consensus       144 ~~~~~~g~~~r~l~p~~~~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-~~~~~~l~~GD~~~~~~~~pH  222 (246)
T 1sfn_A          144 PFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENYYPVTAGDIIWMGAHCPQ  222 (246)
T ss_dssp             ETTSCTTEEEEECSCCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTTCCE
T ss_pred             ccCCCCCeEEEEeCCCccCCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-CCEEEEcCCCCEEEECCCCCE
Confidence            4566666666666666778899999999999998876 46889999999999999999 999999999999999999999


Q ss_pred             EEEe--CCeEEEEEEEEe
Q 025000          121 SLRA--EGSATLVVFERR  136 (259)
Q Consensus       121 ~~~N--~~~a~~l~v~~~  136 (259)
                      +|+|  ++++++++++..
T Consensus       223 ~~~n~g~~~~~yl~~kd~  240 (246)
T 1sfn_A          223 WYGALGRNWSKYLLYKDM  240 (246)
T ss_dssp             EEEEESSSCEEEEEEEEC
T ss_pred             EEEcCCCCCEEEEEEEec
Confidence            9999  678999999754

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.58  E-value=6.5e-15  Score=123.09  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEec
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRY  137 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y  137 (259)
                      .++.+++++++||+..+.|.|.++|++|||+|++++++ + |+++.|++||++ ||++.+|+|+|  +++++++|+..+.
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l-d~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P~  154 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL-DDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIEA  154 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC-GGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEEC
T ss_pred             CCeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE-CCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcCC
Confidence            47888999999999999999999999999999999999 7 899999999999 99999999999  6689999998776


Q ss_pred             ccc
Q 025000          138 ASL  140 (259)
Q Consensus       138 ~p~  140 (259)
                      .|+
T Consensus       155 ~p~  157 (172)
T 3es1_A          155 PAY  157 (172)
T ss_dssp             CCC
T ss_pred             Cce
Confidence            553

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.57  E-value=2e-14  Score=114.39  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=76.0

Q ss_pred             ceEEEEEee-CCCC-CcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEE
Q 025000          163 EVFQLRKLL-PQAV-PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYA  239 (259)
Q Consensus       163 ~~~~~~~l~-p~~~-~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~  239 (259)
                      +++..+.++ |.+. +..+.+..++++||+.++. |.|. .+|.+|||+|++.+.++|+++.+++||+++++++++|++.
T Consensus        39 g~~~~~~ll~p~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~~E~~~Vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~  117 (133)
T 1o4t_A           39 GEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGL-HKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIE  117 (133)
T ss_dssp             SEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEE-EECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEEEEE
T ss_pred             CeEEEEEccChhhCCCceEEEEEEEECCCCccCc-eECCCccEEEEEEeCEEEEEECCEEEEeCCCcEEEECCCCcEEeE
Confidence            556666555 5554 4567788999999999986 5665 7899999999999999999999999999999999999999


Q ss_pred             eCCCccEEEEEE
Q 025000          240 ALGKTRTRYLLY  251 (259)
Q Consensus       240 n~G~e~~~fi~~  251 (259)
                      |.|+++++|++.
T Consensus       118 n~~~~~~~~l~v  129 (133)
T 1o4t_A          118 NTGNTDLEFLAV  129 (133)
T ss_dssp             CCSSSCEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999999874

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.55  E-value=3e-14  Score=117.17  Aligned_cols=89  Identities=13%  Similarity=0.169  Sum_probs=79.4

Q ss_pred             CCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-
Q 025000           46 WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        46 ~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      +.+...++|+++.. ..|++.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|++.+|+++| 
T Consensus        28 ~~g~~~~~L~~~~~-~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-~g~~~~l~~Gd~i~ip~~~~H~~~n~  105 (156)
T 3kgz_A           28 FQDVSRQLLFADPN-LACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-GETISDVAQGDLVFIPPMTWHQFRAN  105 (156)
T ss_dssp             SEEEEEEEEECCTT-CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCCEEEECC
T ss_pred             cCCeEEEEEEcCCC-CcEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEeC
Confidence            45677788888764 78999999999999988888889999999999999999 9999999999999999999999999 


Q ss_pred             -CCeEEEEEEEEe
Q 025000          125 -EGSATLVVFERR  136 (259)
Q Consensus       125 -~~~a~~l~v~~~  136 (259)
                       +++++++++...
T Consensus       106 g~~~~~~l~i~~~  118 (156)
T 3kgz_A          106 RGDCLGFLCVVNA  118 (156)
T ss_dssp             SSSCEEEEEEEES
T ss_pred             CCCCEEEEEEEeC
Confidence             568888888643

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.55  E-value=1.1e-13  Score=114.85  Aligned_cols=90  Identities=16%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             CCcceEEEEecCCCC---CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEE
Q 025000           46 WTNTLGAYLITPAMG---SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL  122 (259)
Q Consensus        46 ~~~~~~~~l~sp~~g---~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~  122 (259)
                      +.+...++|+++..|   ..|.+.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||+++||++.+|++
T Consensus        36 ~~g~~~~~L~~~~~g~~~~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~~~~H~~  114 (167)
T 3ibm_A           36 FSGARRQTLVGRPAGQEAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-DDRVEPLTPLDCVYIAPHAWHQI  114 (167)
T ss_dssp             -CCEEEEEEECTTTTCCSSSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-TTEEEEECTTCEEEECTTCCEEE
T ss_pred             CCCcEEEEEECCCCCCCCCcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCcEEE
Confidence            467788899998873   58999999999999988888889999999999999999 99999999999999999999999


Q ss_pred             EeC---CeEEEEEEEEe
Q 025000          123 RAE---GSATLVVFERR  136 (259)
Q Consensus       123 ~N~---~~a~~l~v~~~  136 (259)
                      +|.   ++++++++..+
T Consensus       115 ~n~~~~~~~~~l~i~~~  131 (167)
T 3ibm_A          115 HATGANEPLGFLCIVDS  131 (167)
T ss_dssp             EEESSSCCEEEEEEEES
T ss_pred             EeCCCCCCEEEEEEEeC
Confidence            993   47888887543

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.54  E-value=1.7e-14  Score=108.59  Aligned_cols=74  Identities=11%  Similarity=-0.012  Sum_probs=66.8

Q ss_pred             cceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      ..+.+..++++||+.++. |+|..+ +.+|||+|++.+.++|  +.+.+++||.+|++++.+|++.|.|+++++||+.
T Consensus        16 ~~~~~~~~~~~Pg~~~~~-H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGW-HRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SSEEEEEEEECTTCBCCS-EECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEEECCCCCCCC-EECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            356778899999999997 666665 6999999999999998  8999999999999999999999999999999874

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.54  E-value=3.8e-14  Score=111.56  Aligned_cols=89  Identities=15%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      .++..+.|.+.+....+.+..++++||..++. |.|..+|.+||++|++.+.++|+++.+++||++++++|++|++.|.|
T Consensus        32 ~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~  110 (126)
T 1vj2_A           32 RGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDR-HSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDT  110 (126)
T ss_dssp             EEEEEEEEECTTTCSSEEEEEEEEEEEEEEEE-ECCSSCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCEEEECCS
T ss_pred             CCeEEEEEeCCCCCCCEEEEEEEECCCCcCCc-eeCCCcEEEEEEEeEEEEEECCEEEEECCCCEEEECCCCcEEeEeCC
Confidence            45677777765546678888999999999985 77888899999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEe
Q 025000          243 KTRTRYLLYK  252 (259)
Q Consensus       243 ~e~~~fi~~k  252 (259)
                      +++++|++.-
T Consensus       111 ~~~~~~l~v~  120 (126)
T 1vj2_A          111 DSEVEFLCLI  120 (126)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCEEEEEEE
Confidence            9999998764

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.54  E-value=1.7e-14  Score=108.51  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCce-EEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDVE-RFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  134 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~E-ef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~  134 (259)
                      +..+.+.+++++||+..+.|.|..+ |++||++|++++++ ++  +++.|++||++++|++.+|+++|  +++++++++.
T Consensus        15 ~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v~   93 (97)
T 2fqp_A           15 NERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET-PEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIE   93 (97)
T ss_dssp             SSSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE-TTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             CCeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe-CCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEEE
Confidence            4588999999999998888877664 69999999999999 77  79999999999999999999999  5589998886


Q ss_pred             E
Q 025000          135 R  135 (259)
Q Consensus       135 ~  135 (259)
                      .
T Consensus        94 ~   94 (97)
T 2fqp_A           94 I   94 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.54  E-value=5e-13  Score=127.05  Aligned_cols=75  Identities=11%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe---CC-EEE--EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GD-SWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~---~g-~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ++.+..+.|+||+..+. |.|... |..||++|++.+.+   +| +.+  .|++||++++|.|.+|.. |.|+++++||.
T Consensus       322 giS~a~v~L~pGgm~~P-HwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~-~ag~e~~~~l~  399 (466)
T 3kgl_A          322 RLSALRGSIRQNAMVLP-QWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVK-RATSEQFRWIE  399 (466)
T ss_dssp             TCEEEEEEEETTEEEEE-EEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEE-EECSSEEEEEE
T ss_pred             ceeeEEEEeecCcEeee-eECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEECCCCeEEE-EcCCCCEEEEE
Confidence            68899999999999986 677554 88999999998754   33 334  599999999999999977 88999999999


Q ss_pred             Eeec
Q 025000          251 YKDV  254 (259)
Q Consensus       251 ~k~~  254 (259)
                      +++-
T Consensus       400 ~f~s  403 (466)
T 3kgl_A          400 FKTN  403 (466)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9764

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.54  E-value=3.1e-14  Score=112.08  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=82.2

Q ss_pred             cCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEE
Q 025000           42 PLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS  121 (259)
Q Consensus        42 ~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~  121 (259)
                      .+++..+...+.|+++..+..++++.++++||+..+.|.|..+|++||++|++++.+ +++++.|++||++++|++.+|+
T Consensus        27 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~g~~H~  105 (126)
T 1vj2_A           27 STDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIFVEPNEIHG  105 (126)
T ss_dssp             CSSSEEEEEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTCCEE
T ss_pred             CCCCCCCeEEEEEeCCCCCCCEEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE-CCEEEEECCCCEEEECCCCcEE
Confidence            456666778888888877889999999999998888888889999999999999999 9999999999999999999999


Q ss_pred             EEe--CCeEEEEEEEE
Q 025000          122 LRA--EGSATLVVFER  135 (259)
Q Consensus       122 ~~N--~~~a~~l~v~~  135 (259)
                      ++|  +++++++++..
T Consensus       106 ~~~~~~~~~~~l~v~~  121 (126)
T 1vj2_A          106 FRNDTDSEVEFLCLIP  121 (126)
T ss_dssp             EECCSSSCEEEEEEEE
T ss_pred             eEeCCCCCEEEEEEEc
Confidence            999  44788888753

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.54  E-value=1.9e-14  Score=113.17  Aligned_cols=83  Identities=13%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEE
Q 025000           52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATL  130 (259)
Q Consensus        52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~  130 (259)
                      ..+.+...++.+.+.+++++||+....|. ..+|++|||+|++++++ +|+++.|++||+++||+|.+|+++| ++++++
T Consensus        29 g~v~s~~~~~~~~~~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~-~g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~~  106 (119)
T 3lwc_A           29 GNLVDERHGGPITIGYGRYAPGQSLTETM-AVDDVMIVLEGRLSVST-DGETVTAGPGEIVYMPKGETVTIRSHEEGALT  106 (119)
T ss_dssp             EEC------CCCEEEEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE-TTEEEEECTTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             EEeecCCCCCCEEEEEEEECCCCCcCccC-CCCEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCEEEEEcCCCCeEE
Confidence            33445555678999999999998777775 88999999999999999 9999999999999999999999999 478999


Q ss_pred             EEEEEe
Q 025000          131 VVFERR  136 (259)
Q Consensus       131 l~v~~~  136 (259)
                      +++..+
T Consensus       107 l~v~~P  112 (119)
T 3lwc_A          107 AYVTYP  112 (119)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            998654

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=3.4e-14  Score=111.00  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             eEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          179 FNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      +.+..++++||+.++. |.|. .+|.+|||+|++.+.+ ||+++.+++||++++++|++|++.|.|+++++||+.-
T Consensus        39 ~~~~~~~~~pg~~~~~-H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~  113 (125)
T 3h8u_A           39 SVVVVWHAHPGQEIAS-HVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVV  113 (125)
T ss_dssp             CEEEEEEECTTCEECC-C-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             EEEEEEEECCCCcCCc-ccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEE
Confidence            5677899999999997 4555 5788999999999999 9999999999999999999999999999999999763

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.54  E-value=6.2e-14  Score=118.03  Aligned_cols=86  Identities=16%  Similarity=0.278  Sum_probs=74.0

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCC---CCCCCceEEEEEEECEEEEEEcCC----cEEEEeCCcEEEeCCCCcE
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSA---LPPHDVERFIFVVQGSAMLTNASG----VSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~---~h~~~~Eef~yVl~G~l~v~v~~g----e~~~L~~Gd~i~~p~~~~H  120 (259)
                      +.....+..+..+..|++++++++||+..+   .|.|.++|++||++|++++.+ ++    +++.|++||+++||++.+|
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~-~~~~~~~~~~l~~GD~~~~~~~~~H  180 (198)
T 2bnm_A          102 YYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW-GDKENPKEALLPTGASMFVEEHVPH  180 (198)
T ss_dssp             TEEEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE-SCTTSCEEEEECTTCEEEECTTCCE
T ss_pred             ceEEEeeccCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE-CCcCCcccEEECCCCEEEeCCCCce
Confidence            345555555555789999999999999775   577888999999999999999 88    9999999999999999999


Q ss_pred             EEEeC---CeEEEEEEE
Q 025000          121 SLRAE---GSATLVVFE  134 (259)
Q Consensus       121 ~~~N~---~~a~~l~v~  134 (259)
                      +++|.   ++++++|+.
T Consensus       181 ~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          181 AFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             EEEESTTSCCEEEEEEE
T ss_pred             EEEecCCCCCeEEEEEe
Confidence            99996   578998874

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.52  E-value=2.6e-13  Score=129.01  Aligned_cols=74  Identities=8%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe---CC-EEE--EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GD-SWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~---~g-~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ++.+..+.|+||+..+. |.|+.. |..||++|++.+.+   +| +.+  .|++||++++|.|.+|... .|+++++||.
T Consensus       322 giS~a~v~l~pGgm~~P-HwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~~~-ag~e~~~~l~  399 (465)
T 3qac_A          322 RLSAAKGVLYRNAMMAP-HYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQ-AFEDGFEWVS  399 (465)
T ss_dssp             TCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEE-EEEEEEEEEE
T ss_pred             ceeEEEEEecCCcEeee-EECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEEEE-cCCCCeEEEE
Confidence            36889999999999986 677655 88999999997654   33 344  4999999999999999875 6899999999


Q ss_pred             Eee
Q 025000          251 YKD  253 (259)
Q Consensus       251 ~k~  253 (259)
                      +++
T Consensus       400 f~~  402 (465)
T 3qac_A          400 FKT  402 (465)
T ss_dssp             EES
T ss_pred             Eec
Confidence            975

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.52  E-value=3.2e-14  Score=113.30  Aligned_cols=92  Identities=21%  Similarity=0.288  Sum_probs=81.4

Q ss_pred             CCCCcceEEEEecCCCC-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEE--EcCCcEEEEeCCcEEEeCCCCcE
Q 025000           44 PEWTNTLGAYLITPAMG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT--NASGVSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        44 p~~~~~~~~~l~sp~~g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~--v~~ge~~~L~~Gd~i~~p~~~~H  120 (259)
                      ++..+...++++++..+ ..+.+..++++||+..+.|.|..+|++||++|++++.  + +|+++.|++||++++|+|.+|
T Consensus        19 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-~~~~~~l~~Gd~~~ip~~~~H   97 (145)
T 3ht1_A           19 PGAKETTHRKLIDTPDGADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD-QGRTEEVGPGEAIFIPRGEPH   97 (145)
T ss_dssp             TTCEEEEEEEEECGGGTCCSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGG-GTEEEEECTTCEEEECTTCCB
T ss_pred             CCCCCcEEEEEEccCCCCCcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeE-CCEEEEECCCCEEEECCCCeE
Confidence            45567788889988765 4899999999999998888888889999999999999  9 999999999999999999999


Q ss_pred             EEEe--CCeEEEEEEEEe
Q 025000          121 SLRA--EGSATLVVFERR  136 (259)
Q Consensus       121 ~~~N--~~~a~~l~v~~~  136 (259)
                      +++|  +++++++++..+
T Consensus        98 ~~~~~~~~~~~~l~i~~~  115 (145)
T 3ht1_A           98 GFVTGPGQTCRFLVVAPC  115 (145)
T ss_dssp             EEECCTTCCEEEEEEEES
T ss_pred             EeEcCCCCCEEEEEEECC
Confidence            9999  557888888644

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.52  E-value=8.7e-14  Score=116.80  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=74.1

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCC--CCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSA--LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~--~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      +.....+..+..+..++++.++++||+...  .|.|+.+|++||++|++++.+ +|+++.|++||+++||++.+|+++| 
T Consensus        89 g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~GD~i~i~~~~~H~~~n~  167 (192)
T 1y9q_A           89 NMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQWHELQQGEHIRFFSDQPHGYAAV  167 (192)
T ss_dssp             TEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-TTEEEEECTTCEEEEECSSSEEEEES
T ss_pred             CEEEEEeccCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-CCEEEEeCCCCEEEEcCCCCeEeECC
Confidence            345555665566789999999999998764  566888999999999999999 9999999999999999999999999 


Q ss_pred             -CCeEEEEEEEEe
Q 025000          125 -EGSATLVVFERR  136 (259)
Q Consensus       125 -~~~a~~l~v~~~  136 (259)
                       ++++ ++|+..+
T Consensus       168 ~~~~~-~l~v~~~  179 (192)
T 1y9q_A          168 TEKAV-FQNIVAY  179 (192)
T ss_dssp             SSCEE-EEEEEEC
T ss_pred             CCCcE-EEEEEec
Confidence             5678 8877643

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.52  E-value=1.6e-13  Score=115.49  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=78.3

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCc--ceeeccceEEEEEEceEEEEeCC----EEEEccCCcEEEeCCCCce
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV--KEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~--~~~H~~eh~~~il~G~g~~~~~g----~~~~v~~GD~i~~~~~~~H  236 (259)
                      +++..+.|.+...+..+.+..++++||+..+.  +|+|..+|.+|||+|++.+.++|    +++.+++||+++++++.+|
T Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H  180 (198)
T 2bnm_A          101 DYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPH  180 (198)
T ss_dssp             TTEEEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCE
T ss_pred             CceEEEeeccCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCce
Confidence            45556667676666778888999999999885  57777789999999999999999    9999999999999999999


Q ss_pred             eEEeC-CCccEEEEEE
Q 025000          237 WYAAL-GKTRTRYLLY  251 (259)
Q Consensus       237 ~~~n~-G~e~~~fi~~  251 (259)
                      ++.|. |++++++|+.
T Consensus       181 ~~~n~~~~~~~~~l~v  196 (198)
T 2bnm_A          181 AFTAAKGTGSAKLIAV  196 (198)
T ss_dssp             EEEESTTSCCEEEEEE
T ss_pred             EEEecCCCCCeEEEEE
Confidence            99999 9999999874

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.52  E-value=1.3e-13  Score=113.84  Aligned_cols=90  Identities=12%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEeCCEEEEccCCcEEEeCCC--CceeEEeCC
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF--VPQWYAALG  242 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~--~~H~~~n~G  242 (259)
                      ..+.|.+......+.+.+++++||+.+...|.|.. +|.+|||+|++.+.++|+++.+++||+++++++  ++|++.|.|
T Consensus        30 ~~~~l~~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~  109 (163)
T 3i7d_A           30 SSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRT  109 (163)
T ss_dssp             EEEEHHHHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCCCBEEECCS
T ss_pred             EEEEcccCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCEEEEeCCCCEEEECCCCCcceEEEECC
Confidence            44445565556678899999999997743466665 799999999999999999999999999999999  999999999


Q ss_pred             CccEEEEEEeecC
Q 025000          243 KTRTRYLLYKDVN  255 (259)
Q Consensus       243 ~e~~~fi~~k~~n  255 (259)
                      +++++||+...-.
T Consensus       110 ~~~~~~l~v~~p~  122 (163)
T 3i7d_A          110 DAPATFLVVGTRT  122 (163)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCEEEEEEECCC
Confidence            9999999876433

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.52  E-value=7.4e-14  Score=114.29  Aligned_cols=82  Identities=18%  Similarity=0.356  Sum_probs=71.7

Q ss_pred             CCCCCcceEEEEEEecCCc-ccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCC-CceeEEeCCCccEEEE
Q 025000          172 PQAVPFDFNIHIMDFQPGD-FLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF-VPQWYAALGKTRTRYL  249 (259)
Q Consensus       172 p~~~~~~~~~~~~t~~PG~-~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~-~~H~~~n~G~e~~~fi  249 (259)
                      +......+.+..++++||+ ..+.|.|+..+|.+|||+|++.+.++|+++.+++||+++++++ ++|++.|.|+++++||
T Consensus        39 ~~~g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l  118 (162)
T 3l2h_A           39 DAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCL  118 (162)
T ss_dssp             HHHTCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEE
T ss_pred             CCCCCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEE
Confidence            3334457888999999999 5887544478899999999999999999999999999999998 9999999999999998


Q ss_pred             EEee
Q 025000          250 LYKD  253 (259)
Q Consensus       250 ~~k~  253 (259)
                      +...
T Consensus       119 ~v~~  122 (162)
T 3l2h_A          119 VIGQ  122 (162)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8754

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.51  E-value=8.8e-14  Score=115.49  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=79.2

Q ss_pred             CCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-
Q 025000           46 WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        46 ~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      +.+...++|+++.. ..|.+.+++++||+..+.|.|..+|++||++|++++.+ +|+++.|++||++++|++++|+++| 
T Consensus        37 ~~gv~~r~L~~~~~-~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-~g~~~~l~~GD~i~ip~g~~H~~~n~  114 (166)
T 3jzv_A           37 FRSVTRQVLFSGNG-LTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV-GRAVSAVAPYDLVTIPGWSWHQFRAP  114 (166)
T ss_dssp             CEEEEEEEEECCTT-CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEECC
T ss_pred             cCCeEEEEEECCCC-CeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEeC
Confidence            45677788887764 68999999999999988888888999999999999999 9999999999999999999999999 


Q ss_pred             -CCeEEEEEEEEe
Q 025000          125 -EGSATLVVFERR  136 (259)
Q Consensus       125 -~~~a~~l~v~~~  136 (259)
                       +++++++++...
T Consensus       115 ~~~~~~~l~i~~~  127 (166)
T 3jzv_A          115 ADEALGFLCMVNA  127 (166)
T ss_dssp             TTSCEEEEEEEES
T ss_pred             CCCCEEEEEEEcc
Confidence             568888888644

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.51  E-value=1.6e-13  Score=111.22  Aligned_cols=97  Identities=20%  Similarity=0.232  Sum_probs=81.8

Q ss_pred             CCCCcccCCceEEEEEeeCCCC-CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE-EEccCCcEEEeC
Q 025000          154 KQPLLETPGEVFQLRKLLPQAV-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW-YPVQAGDVLWMA  231 (259)
Q Consensus       154 di~~~~~~g~~~~~~~l~p~~~-~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~-~~v~~GD~i~~~  231 (259)
                      +.|.....| ++..+.|.+.+. ...+.+..++++||..++. |.|...|.+|||+|++.+.++|+. +.+++||+++++
T Consensus        23 ~~~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ip  100 (147)
T 2f4p_A           23 KGSSDFFTG-NVWVKMLVTDENGVFNTQVYDVVFEPGARTHW-HSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIP  100 (147)
T ss_dssp             ECCTTTEES-CEEEEEEECCTTCSSSCEEEEEEECTTCEECS-EECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEEC
T ss_pred             CCCcCEEEC-cEEEEEEECCCCCCCcEEEEEEEECCCCccCc-eECCCceEEEEEeCEEEEEECCEEEEEECCCCEEEEC
Confidence            344444444 456777777554 5678888999999999986 788888999999999999999998 999999999999


Q ss_pred             CCCceeEEeCCCccEEEEEEe
Q 025000          232 PFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       232 ~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      ++++|++.|.|++++++|+.-
T Consensus       101 ~~~~H~~~n~~~~~~~~l~v~  121 (147)
T 2f4p_A          101 PNVVHWHGAAPDEELVHIGIS  121 (147)
T ss_dssp             TTCCEEEEEBTTBCEEEEEEE
T ss_pred             CCCcEEeEeCCCCCEEEEEEE
Confidence            999999999999999998764

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.50  E-value=6.5e-14  Score=108.73  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      +.++++.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|++.+|+++|.++++++++
T Consensus        33 ~~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~  105 (114)
T 3fjs_A           33 EHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-DGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVT  105 (114)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEEESSSEEEEEE
T ss_pred             CCCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE-CCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            347999999999999888888888999999999999999 9999999999999999999999999777776664

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.50  E-value=7e-13  Score=126.90  Aligned_cols=74  Identities=11%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             ceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeC---C-EEE--EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLG---D-SWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~---g-~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+++..+.|.||+..+. |.|. ..|..||++|++.+.+=   | +.+  .|++||++++|.|.+|...| ++++++||+
T Consensus       357 giS~a~v~L~pGgm~~P-HwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~a-~~e~~~~l~  434 (496)
T 3ksc_A          357 KLSAEHGSLHKNAMFVP-HYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKS-LSDRFSYVA  434 (496)
T ss_dssp             TCEEEEEEEETTCEEEE-EEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEE
T ss_pred             ceeEEEEEeeCCeEECC-eeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEEEEe-CCCCEEEEE
Confidence            36889999999999987 5554 45889999999987542   2 444  49999999999999997766 589999999


Q ss_pred             Eee
Q 025000          251 YKD  253 (259)
Q Consensus       251 ~k~  253 (259)
                      +++
T Consensus       435 f~~  437 (496)
T 3ksc_A          435 FKT  437 (496)
T ss_dssp             EES
T ss_pred             EEC
Confidence            985

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.49  E-value=3.3e-13  Score=105.58  Aligned_cols=86  Identities=16%  Similarity=0.224  Sum_probs=74.6

Q ss_pred             EEEEEeeCC-CCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          165 FQLRKLLPQ-AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       165 ~~~~~l~p~-~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      +..+.+.|. +....+.+...+++||...+. |.|...|.+||++|++.+.+||+.+.+++||++++++|+.|++.|.|+
T Consensus        19 ~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-H~H~~~Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~   97 (128)
T 4i4a_A           19 LDGSRLLPWEGLNTPFGGAWCIVRPETKSFR-HSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQ   97 (128)
T ss_dssp             EEEEECCCCTTCCCSSEEEEEEECTTEECCC-BCCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCCEEEEECSS
T ss_pred             CceEeecCccccCCCcEEEEEEECCCCccCC-EecCCeEEEEEEeCEEEEEECCEEEEECCCcEEEECCCCcEEeEeCCC
Confidence            344556653 445677888999999999986 677888999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEE
Q 025000          244 TRTRYLLY  251 (259)
Q Consensus       244 e~~~fi~~  251 (259)
                      ++++|++.
T Consensus        98 ~~~~~~~i  105 (128)
T 4i4a_A           98 EDFHFYTI  105 (128)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            99998764

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.49  E-value=1.5e-13  Score=102.53  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=71.7

Q ss_pred             eEEEEEeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          164 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       164 ~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      ++..+.+.+   ...+.+..++++||..++. |.|. .+|.+||++|++.+.++|+.+.+++||++++++|++|++.|.|
T Consensus        16 ~~~~~~~~~---~~~~~~~~~~~~pg~~~~~-H~H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~   91 (105)
T 1v70_A           16 KMAKIPVFQ---SERMLYDLYALLPGQAQKV-HVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNES   91 (105)
T ss_dssp             SCEEEEEEE---ETTEEEEEEEECTTCEEEE-ECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCS
T ss_pred             ccccceecC---CCceEEEEEEECCCCcCCc-cCCCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCC
Confidence            334455543   2246777899999999986 5665 4689999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEe
Q 025000          243 KTRTRYLLYK  252 (259)
Q Consensus       243 ~e~~~fi~~k  252 (259)
                      ++++++++.-
T Consensus        92 ~~~~~~~~v~  101 (105)
T 1v70_A           92 ASPALLLVVT  101 (105)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999998764

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.49  E-value=1.6e-13  Score=107.77  Aligned_cols=86  Identities=12%  Similarity=0.075  Sum_probs=70.1

Q ss_pred             CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          162 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       162 g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      ++.+++..+...+....+.+..++++||+.++.|  ...+|.+|||+|++.+.+||+.+.+++||++++++|++|++.|.
T Consensus        23 ~~~~~~g~v~s~~~~~~~~~~~~~~~pG~~~~~H--~~~~E~~~Vl~G~~~~~~~g~~~~l~~GD~v~ip~g~~H~~~~~  100 (119)
T 3lwc_A           23 EADISVGNLVDERHGGPITIGYGRYAPGQSLTET--MAVDDVMIVLEGRLSVSTDGETVTAGPGEIVYMPKGETVTIRSH  100 (119)
T ss_dssp             EEEEEEEEC------CCCEEEEEEECTTCEEEEE--CSSEEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCEEEEEEE
T ss_pred             CCCEEEEEeecCCCCCCEEEEEEEECCCCCcCcc--CCCCEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCEEEEEcC
Confidence            4777888877666667788889999999998763  37779999999999999999999999999999999999999998


Q ss_pred             CCccEEEEE
Q 025000          242 GKTRTRYLL  250 (259)
Q Consensus       242 G~e~~~fi~  250 (259)
                      + +++++|+
T Consensus       101 ~-~~~~~l~  108 (119)
T 3lwc_A          101 E-EGALTAY  108 (119)
T ss_dssp             E-EEEEEEE
T ss_pred             C-CCeEEEE
Confidence            6 6666665

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.48  E-value=1.5e-13  Score=113.41  Aligned_cols=86  Identities=21%  Similarity=0.329  Sum_probs=74.2

Q ss_pred             eEEEEecCCCC-CcEEEEEEEecCCCcC-CCCCCCc-eEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEe
Q 025000           50 LGAYLITPAMG-SHFVMYLANMQENARS-ALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA  124 (259)
Q Consensus        50 ~~~~l~sp~~g-~~f~~~~~~l~Pg~~~-~~h~~~~-Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N  124 (259)
                      ..+.++++..+ ..|++++++++||+.. +.|.|.. ||++|||+|++++++ +++++.|++||+++||++  ++|+++|
T Consensus        29 ~~~~~l~~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~-~~~~~~l~~GD~i~ip~~~~~~H~~~n  107 (163)
T 3i7d_A           29 RSSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD-DQGEHPMVPGDCAAFPAGDPNGHQFVN  107 (163)
T ss_dssp             EEEEEHHHHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTCCCCBEEEC
T ss_pred             eEEEEcccCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE-CCEEEEeCCCCEEEECCCCCcceEEEE
Confidence            44566666654 5899999999999966 5776665 799999999999999 999999999999999999  9999999


Q ss_pred             --CCeEEEEEEEEe
Q 025000          125 --EGSATLVVFERR  136 (259)
Q Consensus       125 --~~~a~~l~v~~~  136 (259)
                        +++++++++..+
T Consensus       108 ~~~~~~~~l~v~~p  121 (163)
T 3i7d_A          108 RTDAPATFLVVGTR  121 (163)
T ss_dssp             CSSSCEEEEEEEEC
T ss_pred             CCCCCEEEEEEECC
Confidence              668999998654

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.48  E-value=1.9e-13  Score=106.13  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=69.0

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      .+.+..++++||..++. |.|..+|.+|||+|++.+.+||+++.+++||++|++++++|++.|.++..+..++.++-
T Consensus        35 ~~~v~~~~l~~G~~~~~-H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v~p~  110 (114)
T 3fjs_A           35 RLEVMRMVLPAGKQVGS-HSVAGPSTIQCLEGEVEIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVVLVD  110 (114)
T ss_dssp             TEEEEEEEECTTCEEEE-ECCSSCEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEESSSEEEEEEEECC-
T ss_pred             CEEEEEEEECCCCccCc-eeCCCcEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEEEEeCC
Confidence            46778999999999997 78888899999999999999999999999999999999999999999888888777653

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.48  E-value=2.3e-13  Score=106.26  Aligned_cols=96  Identities=11%  Similarity=0.079  Sum_probs=77.4

Q ss_pred             cCCCCCCcccCC-ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEE
Q 025000          151 STDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW  229 (259)
Q Consensus       151 ~~~di~~~~~~g-~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~  229 (259)
                      .++++++..... .++..+.+.    +..+.+..++++||..++. |.|..+|.+|||+|++.+.++|+.+.+++||+++
T Consensus        16 ~~~~~~~~~~~~~~G~~~~~~~----~~~~~~~~~~~~pg~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~   90 (126)
T 4e2g_A           16 FYDLTEVRSFSPLPGFAMQAIQ----GKNLMLNWVRIEPNTEMPA-HEHPHEQAGVMLEGTLELTIGEETRVLRPGMAYT   90 (126)
T ss_dssp             EEEGGGSCCBCSSTTEEEEEEE----CSSCEEEEEEECTTCEEEE-ECCSSEEEEEEEEECEEEEETTEEEEECTTEEEE
T ss_pred             hhhcccceecccCCCeEEEEEe----CCCeEEEEEEECCCCcCCC-ccCCCceEEEEEEeEEEEEECCEEEEeCCCCEEE
Confidence            355666666532 344445542    2357788999999999986 6788889999999999999999999999999999


Q ss_pred             eCCCCceeEEeCCCccEEEEEEe
Q 025000          230 MAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       230 ~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      ++++++|++.|.|+ ++++|..-
T Consensus        91 ip~~~~H~~~~~~~-~~~~l~v~  112 (126)
T 4e2g_A           91 IPGGVRHRARTFED-GCLVLDIF  112 (126)
T ss_dssp             ECTTCCEEEECCTT-CEEEEEEE
T ss_pred             ECCCCcEEeEECCC-CEEEEEEE
Confidence            99999999999988 77777543

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.48  E-value=2.5e-13  Score=104.34  Aligned_cols=85  Identities=15%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCe
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS  127 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~  127 (259)
                      +...+.|...   .++.+.+++++||+..+.|.|..+|++||++|++++.+ +|+++.|++||++++|++.+|+++|.++
T Consensus        22 g~~~~~l~~~---~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~   97 (116)
T 2pfw_A           22 GLKRQMLGFN---HELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-DGVIKVLTAGDSFFVPPHVDHGAVCPTG   97 (116)
T ss_dssp             TEEEEEEEEE---TTEEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEEESSC
T ss_pred             CeEEEEEecC---CceEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-CCEEEEeCCCCEEEECcCCceeeEeCCC
Confidence            4455555533   35899999999998877788889999999999999999 9999999999999999999999999778


Q ss_pred             EEEEEEEEe
Q 025000          128 ATLVVFERR  136 (259)
Q Consensus       128 a~~l~v~~~  136 (259)
                      ++++++..+
T Consensus        98 ~~~l~v~~p  106 (116)
T 2pfw_A           98 GILIDTFSP  106 (116)
T ss_dssp             EEEEEEEES
T ss_pred             cEEEEEECC
Confidence            998888543

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.48  E-value=1e-13  Score=111.09  Aligned_cols=81  Identities=6%  Similarity=0.078  Sum_probs=68.5

Q ss_pred             EEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEE
Q 025000           51 GAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATL  130 (259)
Q Consensus        51 ~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~  130 (259)
                      ...|.++..+ .+++.+++++|| .... ++..+|++|||+|++++++ +|+++.|++||+++||+|.+|+|+|++++++
T Consensus        46 ~~~L~~~~~~-~~~~~~~~~~pG-~~~~-h~~~~E~~~VLeG~~~l~~-~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~  121 (133)
T 2pyt_A           46 TDLVTEQDGS-SMAAGFMQWDNA-FFPW-TLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPTSVRF  121 (133)
T ss_dssp             EEEECGGGTC-SSEEEEEEEEEE-EEEE-ECSSEEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEEecCCCC-cEEEEEEEECCC-Cccc-cCCCCEEEEEEECEEEEEE-CCEEEEECCCcEEEECCCCEEEEEeCCCEEE
Confidence            3445555444 899999999999 3223 3468999999999999999 9999999999999999999999999889999


Q ss_pred             EEEEE
Q 025000          131 VVFER  135 (259)
Q Consensus       131 l~v~~  135 (259)
                      +++..
T Consensus       122 l~v~~  126 (133)
T 2pyt_A          122 LYVAW  126 (133)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99864

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.48  E-value=2e-13  Score=103.77  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             cceEEEEEEecCCcccCcc-eeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          177 FDFNIHIMDFQPGDFLNVK-EVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~-~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      ..+.+..++++||..++.| |.|. .+|.+|||+|++.+.++|+++.+++||+++++++++|++.|.|++++++++.-
T Consensus        19 ~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~   96 (113)
T 2gu9_A           19 RQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFY   96 (113)
T ss_dssp             TTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEE
Confidence            3567889999999998874 2666 78999999999999999999999999999999999999999999999998763

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.48  E-value=1.5e-13  Score=106.20  Aligned_cols=76  Identities=12%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEE-EccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY-PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~-~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      .+.+..++++||..++. |.|...|.+|||+|++.+.++|+.+ .+++||++|+++|++|++.|.|+++++|++.+--
T Consensus        26 ~~~~~~~~~~pg~~~~~-H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~  102 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPK-HYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAP  102 (117)
T ss_dssp             SCEEEEEEEETTCBCCC-EECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             ceEEEEEEECCCCcCCC-EeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECC
Confidence            35567889999999986 7788889999999999999999999 9999999999999999999999999999988543

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.47  E-value=2.3e-12  Score=121.23  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=127.8

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc---CCcEEEEeCCcEEEeCCCCcEEEEe-CC--eEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA---SGVSSKLMVDSYTYLPPNFAHSLRA-EG--SATLVVFE  134 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~---~ge~~~L~~Gd~i~~p~~~~H~~~N-~~--~a~~l~v~  134 (259)
                      +.+.+.+++++|++-..+|+.+.+|++||++|++.+.+.   +.+++.|++||.++||+|..|.+.| ++  ...++.+.
T Consensus        42 ~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~  121 (418)
T 3s7i_A           42 QNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKIS  121 (418)
T ss_dssp             TTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEee
Confidence            567788999999988877766899999999999998872   2347899999999999999999999 32  34444332


Q ss_pred             Eecc-c-------cCCC-CcceeeccCC----------------------------------------------------
Q 025000          135 RRYA-S-------LENH-ITEQIVGSTD----------------------------------------------------  153 (259)
Q Consensus       135 ~~y~-p-------~~g~-~p~~~v~~~~----------------------------------------------------  153 (259)
                      ..-. |       +.|. .+..+.+..+                                                    
T Consensus       122 ~~s~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~~~v~kl~~~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~  201 (418)
T 3s7i_A          122 MPVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNEGVIVKVS  201 (418)
T ss_dssp             EESSBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCC--------------------CCCSEEECC
T ss_pred             cCcCCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCHHHHHhhhcccccccccccccccccccccccccCCceEEcC
Confidence            1110 1       0000 0000000000                                                    


Q ss_pred             -----------------CCCCc-------------c-c--CCceEEEEEeeCCCC-C----cceEEEEEEecCCcccCcc
Q 025000          154 -----------------KQPLL-------------E-T--PGEVFQLRKLLPQAV-P----FDFNIHIMDFQPGDFLNVK  195 (259)
Q Consensus       154 -----------------di~~~-------------~-~--~g~~~~~~~l~p~~~-~----~~~~~~~~t~~PG~~~~~~  195 (259)
                                       .++..             + +  .+|.  +..+.+.+. .    ..+.+.+++|+||+-.+. 
T Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~nl~~~~p~~~n~~G~--~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~P-  278 (418)
T 3s7i_A          202 KEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGK--LFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLP-  278 (418)
T ss_dssp             HHHHHHHHTTCBC--------CTTCCCCEETTCSCCSEEETTEE--EEEECSBTTBHHHHHHTCEEEEEEECTTEEEEE-
T ss_pred             hhhhhhccccccccCCCCcCcccCCCcccccccCCCceeCCCCe--EEEechHHcchhhccCCeeEEEEEecCCceeCc-
Confidence                             00000             0 0  1122  222333333 1    247899999999999986 


Q ss_pred             eeec-cceEEEEEEceEEEEe---CC--------------------------E-EEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          196 EVHY-NQHGLLLLEGQGIYRL---GD--------------------------S-WYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       196 ~~H~-~eh~~~il~G~g~~~~---~g--------------------------~-~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      |.|+ ..+..||++|+|.+.+   ++                          . ...+++||++++|.|.+|+..|.+  
T Consensus       279 H~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--  356 (418)
T 3s7i_A          279 HFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--  356 (418)
T ss_dssp             EEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--
T ss_pred             eecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--
Confidence            6764 4588999999996643   32                          1 477899999999999999999865  


Q ss_pred             cEEEEEEeecCCC
Q 025000          245 RTRYLLYKDVNRN  257 (259)
Q Consensus       245 ~~~fi~~k~~nr~  257 (259)
                      +++|++|+.-++.
T Consensus       357 ~l~~v~f~~~~~~  369 (418)
T 3s7i_A          357 ELHLLGFGINAEN  369 (418)
T ss_dssp             CEEEEEEEESCTT
T ss_pred             CEEEEEEEcCCCC
Confidence            5999999755543

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.47  E-value=2.5e-13  Score=108.03  Aligned_cols=84  Identities=11%  Similarity=0.199  Sum_probs=72.3

Q ss_pred             EEEEecCC-C-CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--C
Q 025000           51 GAYLITPA-M-GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--E  125 (259)
Q Consensus        51 ~~~l~sp~-~-g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~  125 (259)
                      .+.+++|. . +..+++.+++++||+..+.|.|. .+|++||++|++++++ +++++.|++||++++|++.+|+++|  +
T Consensus        43 ~~~ll~p~~~~~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~i~~~~~H~~~n~~~  121 (133)
T 1o4t_A           43 MAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-NGKDVPIKAGDVCFTDSGESHSIENTGN  121 (133)
T ss_dssp             EEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred             EEEccChhhCCCceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE-CCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence            33477775 3 45678889999999887777775 6999999999999999 9999999999999999999999999  4


Q ss_pred             CeEEEEEEEE
Q 025000          126 GSATLVVFER  135 (259)
Q Consensus       126 ~~a~~l~v~~  135 (259)
                      ++++++|+..
T Consensus       122 ~~~~~l~v~~  131 (133)
T 1o4t_A          122 TDLEFLAVII  131 (133)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            5899988753

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.47  E-value=1.7e-12  Score=124.59  Aligned_cols=74  Identities=12%  Similarity=0.119  Sum_probs=63.6

Q ss_pred             ceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEeC---CE---EEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLG---DS---WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~---g~---~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ++.+..++|+||+..+. |.|.. .|.+|||+|++.+.+-   |.   ...|++||++++|.|.+|.. +.|++++.|++
T Consensus       393 giS~a~v~L~pGgm~~P-HwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~~-~ag~e~l~fla  470 (531)
T 3fz3_A          393 RLSAERGFFYRNGIYSP-HWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQ-QAGNQGFEYFA  470 (531)
T ss_dssp             TCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEE-EEEEEEEEEEE
T ss_pred             ceeEEEEEeecCccccc-eEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEEE-ecCCCCEEEEE
Confidence            57889999999999986 67764 6899999999998773   32   57899999999999999954 56799999999


Q ss_pred             Eee
Q 025000          251 YKD  253 (259)
Q Consensus       251 ~k~  253 (259)
                      |++
T Consensus       471 F~s  473 (531)
T 3fz3_A          471 FKT  473 (531)
T ss_dssp             EES
T ss_pred             Eec
Confidence            986

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.47  E-value=2.5e-13  Score=121.36  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=76.7

Q ss_pred             ceEEEEEeeCC--CCCcceEEEEEEecCCccc-CcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEE
Q 025000          163 EVFQLRKLLPQ--AVPFDFNIHIMDFQPGDFL-NVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYA  239 (259)
Q Consensus       163 ~~~~~~~l~p~--~~~~~~~~~~~t~~PG~~~-~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~  239 (259)
                      ++.....|...  ..+..+.+.+++++||+.. ..+|+|..+|.+|||+|++.+.++|+++.+++||+++++++++|+++
T Consensus        50 ~~~~~~~L~~p~~~~~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~~~~L~~GD~i~ip~~~~H~~~  129 (278)
T 1sq4_A           50 DNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVR  129 (278)
T ss_dssp             EEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTTCCEEEE
T ss_pred             cCcEEEEEecCCCCCCCcEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCcEEEE
Confidence            44455556533  3456778889999999988 23466788899999999999999999999999999999999999999


Q ss_pred             eCCCccEEEEEEee
Q 025000          240 ALGKTRTRYLLYKD  253 (259)
Q Consensus       240 n~G~e~~~fi~~k~  253 (259)
                      |.|+++++||+...
T Consensus       130 N~g~~~~~~l~v~~  143 (278)
T 1sq4_A          130 NTTGQHTRFHWIRK  143 (278)
T ss_dssp             CCSSSCEEEEEEEE
T ss_pred             ECCCCCEEEEEEEe
Confidence            99999999998753

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.47  E-value=3e-13  Score=110.61  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=73.3

Q ss_pred             EEEecCCCC-CcEEEEEEEecCCCc-CCCCCC-CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC-CcEEEEe--C
Q 025000           52 AYLITPAMG-SHFVMYLANMQENAR-SALPPH-DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA--E  125 (259)
Q Consensus        52 ~~l~sp~~g-~~f~~~~~~l~Pg~~-~~~h~~-~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~-~~H~~~N--~  125 (259)
                      ...+++..| ..|++++++++||+. .+.|.| ..+|++||++|++++++ +|+++.|++||+++||++ .+|+++|  +
T Consensus        34 ~~~l~~~~g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~  112 (162)
T 3l2h_A           34 NKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-ENDQYPIAPGDFVGFPCHAAAHSISNDGT  112 (162)
T ss_dssp             EEEHHHHHTCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTSCCEEEECCSS
T ss_pred             EEEccCCCCCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-CCEEEEeCCCCEEEECCCCceEEeEeCCC
Confidence            445555555 589999999999994 677866 78999999999999999 999999999999999998 9999999  6


Q ss_pred             CeEEEEEEEEe
Q 025000          126 GSATLVVFERR  136 (259)
Q Consensus       126 ~~a~~l~v~~~  136 (259)
                      ++++++++..+
T Consensus       113 ~~~~~l~v~~p  123 (162)
T 3l2h_A          113 ETLVCLVIGQR  123 (162)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEEEECC
Confidence            68999998765

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.46  E-value=5.5e-13  Score=118.58  Aligned_cols=88  Identities=15%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             CcceEEEEecCCCCCcEEEEEEEecCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-
Q 025000           47 TNTLGAYLITPAMGSHFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        47 ~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~-h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      .+...+.|..+..+..|++++++++||+..+. |.|..+|++||++|++++.+ +|+++.|++||+++||++.+|+++| 
T Consensus       166 ~g~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-~~~~~~l~~GD~i~i~~~~~H~~~n~  244 (274)
T 1sef_A          166 TDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-DNEWYPVEKGDYIFMSAYVPQAAYAV  244 (274)
T ss_dssp             TTEEEEECSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred             CCeEEEEeCCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCCEEEEeC
Confidence            45566666666667899999999999998877 88889999999999999999 9999999999999999999999999 


Q ss_pred             -C-CeEEEEEEEE
Q 025000          125 -E-GSATLVVFER  135 (259)
Q Consensus       125 -~-~~a~~l~v~~  135 (259)
                       + ++++++++..
T Consensus       245 ~~~~~~~~l~~~~  257 (274)
T 1sef_A          245 GREEPLMYVYSKD  257 (274)
T ss_dssp             CSSSCEEEEEEEE
T ss_pred             CCCCCEEEEEEEc
Confidence             4 6788888743

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.46  E-value=3e-13  Score=100.88  Aligned_cols=75  Identities=13%  Similarity=0.268  Sum_probs=67.1

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER  135 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~  135 (259)
                      +..+.+.+++++||+..+.|.|. .+|++||++|++++.+ +++++.|++||++++|+|.+|+++|  +++++++++..
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~  102 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-GEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeC
Confidence            45788999999999888888776 5899999999999999 9999999999999999999999999  45789888854

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.46  E-value=2.4e-13  Score=106.40  Aligned_cols=77  Identities=19%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             CcceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      ...+.+.+++++||..++..|.|... +.+||++|++.+.+||+.+.+++||+++++++++|++.|.|+++++|++.-
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~  100 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKIELQAGDWLRIAPDGKRQISAASDSPIGFLCIQ  100 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEEEEEETTEEEEECTTCCEEEEEBTTBCEEEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            34566778999999999833666654 556699999999999999999999999999999999999999999988653

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.46  E-value=4.2e-14  Score=107.39  Aligned_cols=73  Identities=11%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC---EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g---~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+-+.+++|+||+.++.|.|+..++.++|++|++.+.+++   ++.++++||.+|++.|..|.+.|.|++||+||-
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~Ie   91 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLE   91 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEE
Confidence            3567789999999999855545557788899999999987   567799999999999999999999999999985

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.46  E-value=2.8e-13  Score=120.42  Aligned_cols=99  Identities=8%  Similarity=0.067  Sum_probs=83.3

Q ss_pred             CCCCCcccCC-ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEe
Q 025000          153 DKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWM  230 (259)
Q Consensus       153 ~di~~~~~~g-~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~  230 (259)
                      +++-....+| +++.++.|+....+..|.+.+++++||+..+. ++|..||.+|||+|+..+.++ |+++.+++||++|+
T Consensus        43 ~~iv~s~lPg~~~~~~~vL~sP~~G~~f~~~lv~l~PGg~s~~-~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~  121 (266)
T 4e2q_A           43 ESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGL-PPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYL  121 (266)
T ss_dssp             GGCCCEECTTSSSEEEEEEECGGGTCSSEEEEEEECSSEECCC-CCTTEEEEEEEEEECEEEEC--CCCEEECTTEEEEE
T ss_pred             cceEEeeCCCCcCEEEEEEcCCCCCCcEEEEEEEECcCCcCCC-CCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEE
Confidence            4555555566 66677778754446778889999999999986 688999999999999999999 99999999999999


Q ss_pred             CCCCceeEEeCCCccEEEEEEeec
Q 025000          231 APFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       231 ~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      +++++|+++|.  +++++++++-.
T Consensus       122 p~~~~H~~~N~--~~Ar~l~V~k~  143 (266)
T 4e2q_A          122 PPNFHHSLDCV--ESATLVVFERR  143 (266)
T ss_dssp             CTTCCCEEEES--SCEEEEEEEEE
T ss_pred             CCCCCEEEEeC--CCEEEEEEEeE
Confidence            99999999995  78999998643

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.46  E-value=5.8e-13  Score=102.40  Aligned_cols=73  Identities=12%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  135 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~  135 (259)
                      .+.+.++.++||...+.|.|..+|++||++|++++.+ +|+++.|++||++++|++.+|+++|.++++++++..
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~i~~  109 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF-DDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITL  109 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE-TTEEEEECTTCEEEECTTCCBEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEE-CCEEEEecCCCEEEECCCCcEEEEeCCCcEEEEEEE
Confidence            4667788889998888888889999999999999999 999999999999999999999999977888888764

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.46  E-value=3.9e-13  Score=118.62  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=76.9

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      ++...+.|.+...+..+.+..++++||+..+.+++| ..||.+|||+|++.++++|+++.+++||+++++++.+|+++|.
T Consensus        43 ~~~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~~~~L~~Gd~~~~~~~~~H~~~N~  122 (261)
T 1rc6_A           43 ENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNA  122 (261)
T ss_dssp             EEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCCCEEEEC
T ss_pred             CCcEEEEEeCCCCCCcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCEEEEECCCCEEEECCCCCEEEEeC
Confidence            445566676544455666779999999988765444 5778999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEee
Q 025000          242 GKTRTRYLLYKD  253 (259)
Q Consensus       242 G~e~~~fi~~k~  253 (259)
                      |+++++||+.+-
T Consensus       123 ~~~~~~~l~v~~  134 (261)
T 1rc6_A          123 QAEDSQIFLYKR  134 (261)
T ss_dssp             SSSCEEEEEEEE
T ss_pred             CCCCEEEEEEEe
Confidence            999999998763

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.45  E-value=3.6e-13  Score=113.02  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCc-ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV-KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~-~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +++..+.|.+......+.+..++++||+..+. .|+|..+|.+|||+|++.+.++|+++.+++||+++++++.+|++.|.
T Consensus        88 ~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~i~i~~~~~H~~~n~  167 (192)
T 1y9q_A           88 LNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAV  167 (192)
T ss_dssp             TTEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEES
T ss_pred             CCEEEEEeccCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEEEEeCCCCEEEEcCCCCeEeECC
Confidence            45566667666556677788899999998763 35677789999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEE
Q 025000          242 GKTRTRYLLY  251 (259)
Q Consensus       242 G~e~~~fi~~  251 (259)
                      |++++ +|+.
T Consensus       168 ~~~~~-~l~v  176 (192)
T 1y9q_A          168 TEKAV-FQNI  176 (192)
T ss_dssp             SSCEE-EEEE
T ss_pred             CCCcE-EEEE
Confidence            99998 7654

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.45  E-value=3.9e-13  Score=112.54  Aligned_cols=78  Identities=21%  Similarity=0.228  Sum_probs=70.4

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC----CEEEEccCCcEEEeCCCCceeEEeCCCc-cEEEEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG----DSWYPVQAGDVLWMAPFVPQWYAALGKT-RTRYLLY  251 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~----g~~~~v~~GD~i~~~~~~~H~~~n~G~e-~~~fi~~  251 (259)
                      ..+.+.+++++||+..+.| ||..+|.+|||+|++.+.+.    ++.+.+++||++++|+|.+|++.|+|++ ++++++.
T Consensus        39 ~~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v  117 (178)
T 1dgw_A           39 RDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEE
Confidence            3588999999999999875 77788999999999999996    8999999999999999999999999996 8999988


Q ss_pred             eecC
Q 025000          252 KDVN  255 (259)
Q Consensus       252 k~~n  255 (259)
                      .+.+
T Consensus       118 ~~~~  121 (178)
T 1dgw_A          118 AITF  121 (178)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            6544

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.45  E-value=6.7e-13  Score=100.77  Aligned_cols=76  Identities=20%  Similarity=0.257  Sum_probs=67.5

Q ss_pred             CCcEEEEEEEecCCCcCCCC--CCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALP--PHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  134 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h--~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~  134 (259)
                      +..+++++++++||+..+.|  .|. .+|++||++|++++++ +++++.|++||++++|++.+|+++|  +++++++++.
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~   96 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV-DGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFY   96 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE-TTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEE
Confidence            35789999999999887766  777 8999999999999999 9999999999999999999999999  4578888875


Q ss_pred             Ee
Q 025000          135 RR  136 (259)
Q Consensus       135 ~~  136 (259)
                      .+
T Consensus        97 ~~   98 (113)
T 2gu9_A           97 HP   98 (113)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.44  E-value=1.8e-12  Score=99.57  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=78.0

Q ss_pred             eccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEE
Q 025000          149 VGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVL  228 (259)
Q Consensus       149 v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i  228 (259)
                      +...+++++.+... ++..+.|.+.+   .+.+..++++||..++. |.|..+|.+|||+|++.+.++|+.+.+++||++
T Consensus         8 ~~~~~~~~~~~~~~-g~~~~~l~~~~---~~~~~~~~~~pg~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~   82 (116)
T 2pfw_A            8 FSFGEQTEIEDIGG-GLKRQMLGFNH---ELMAVKIWFDKGAEGYV-HAHRHSQVSYVVEGEFHVNVDGVIKVLTAGDSF   82 (116)
T ss_dssp             EECTTTSCCEECST-TEEEEEEEEET---TEEEEEEEECTTEEEEE-ECCSSEEEEEEEEECEEEEETTEEEEECTTCEE
T ss_pred             EecccCceeeeCCC-CeEEEEEecCC---ceEEEEEEECCCCcCCc-EECCcceEEEEEeeEEEEEECCEEEEeCCCCEE
Confidence            33577888876533 34556665542   37788999999999886 777888999999999999999999999999999


Q ss_pred             EeCCCCceeEEeCCCccEEEEEE
Q 025000          229 WMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       229 ~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +++++++|++.|.+  +++++..
T Consensus        83 ~ip~~~~H~~~~~~--~~~~l~v  103 (116)
T 2pfw_A           83 FVPPHVDHGAVCPT--GGILIDT  103 (116)
T ss_dssp             EECTTCCEEEEESS--CEEEEEE
T ss_pred             EECcCCceeeEeCC--CcEEEEE
Confidence            99999999999998  4555544

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=8.6e-13  Score=102.92  Aligned_cols=76  Identities=14%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             CcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEe
Q 025000           61 SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  136 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~  136 (259)
                      ..+.+.+++++||+..+.|.|. .+|++||++|++++++.+|+++.|++||++++|++.+|+++|  +++++++++..+
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p  115 (125)
T 3h8u_A           37 NDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP  115 (125)
T ss_dssp             SSCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred             CCEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence            3577889999999998888776 599999999999999735889999999999999999999999  568888888654

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.43  E-value=3.9e-13  Score=110.03  Aligned_cols=86  Identities=9%  Similarity=0.108  Sum_probs=72.2

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCe
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS  127 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~  127 (259)
                      ++.+..+.++..+..+...+++++ ++.... ++..+|++|||+|++++++ +|+++.|++||++|||+|.+|+|+|.++
T Consensus        51 ~v~i~~l~s~~~~~~~s~g~~~~e-~~~~~~-~~~~eE~~yVLeG~~~l~i-~g~~~~l~~GD~i~iP~G~~h~~~n~~~  127 (151)
T 4axo_A           51 VVYTKDLFTLEESPRLGCGMMEMK-ETTFDW-TLNYDEIDYVIDGTLDIII-DGRKVSASSGELIFIPKGSKIQFSVPDY  127 (151)
T ss_dssp             CEEEEECSCTTTCSSCEEEEEEEE-EEEEEE-ECSSEEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             CEEEEEeecCCCCCcEEEEEEEEc-CccccE-eCCCcEEEEEEEeEEEEEE-CCEEEEEcCCCEEEECCCCEEEEEeCCC
Confidence            344555787777778888888887 433333 4578999999999999999 9999999999999999999999999888


Q ss_pred             EEEEEEEEe
Q 025000          128 ATLVVFERR  136 (259)
Q Consensus       128 a~~l~v~~~  136 (259)
                      ++++|+..+
T Consensus       128 a~~l~V~~P  136 (151)
T 4axo_A          128 ARFIYVTYP  136 (151)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEECC
Confidence            999999654

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.43  E-value=7e-13  Score=101.70  Aligned_cols=73  Identities=10%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ..+.+.+++++||+..+.|.|..+|++||++|++++.+ +|+++.|++||++++|++.+|+++|.++++++++.
T Consensus        38 ~~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v~  110 (115)
T 1yhf_A           38 QDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVV  110 (115)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTSCEEEEESSCEEEEEEE
T ss_pred             CceEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCceEEEEE
Confidence            47889999999998888888889999999999999999 99999999999999999999999997788888874

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.43  E-value=5e-13  Score=124.84  Aligned_cols=77  Identities=14%  Similarity=0.006  Sum_probs=70.8

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEE-EeCCEEEEccCCcEEEeCCCCceeEEe-CCCccEEEEEEee
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAA-LGKTRTRYLLYKD  253 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n-~G~e~~~fi~~k~  253 (259)
                      ...+.+++.+|+||++++. |.|..+|.+|||+|+|.+ .+||+.+++++||++++++|..|++.| +|++++.||+.-|
T Consensus       120 t~~L~a~~~~l~PG~~~~~-HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l~v~d  198 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGA-HRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD  198 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCC-EEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             CCeeEEEEEEECCCCCcCC-ccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEEEccc
Confidence            3568889999999999997 666777999999999987 999999999999999999999999999 9999999998655

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.43  E-value=7e-13  Score=102.37  Aligned_cols=75  Identities=11%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEE-EEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEe
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSS-KLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  136 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~-~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~  136 (259)
                      ..+.+.+++++||+..+.|.|..+|++||++|++++.+ +++++ .|++||++++|++.+|+++|  +.+++++++..+
T Consensus        25 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~  102 (117)
T 2b8m_A           25 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAP  102 (117)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE-TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             CceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE-CCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECC
Confidence            46888899999999888888889999999999999999 99999 99999999999999999999  456788888544

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.43  E-value=5e-13  Score=104.28  Aligned_cols=76  Identities=14%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC-eEEEEEEEEe
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG-SATLVVFERR  136 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~-~a~~l~v~~~  136 (259)
                      +..+.+.+++++||+..+.|.|..+|++||++|++++.+ +|+++.|++||++++|++.+|+++|.+ +++++++..+
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~~p  114 (126)
T 4e2g_A           38 GKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-GEETRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIFSP  114 (126)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-TTEEEEECTTEEEEECTTCCEEEECCTTCEEEEEEEES
T ss_pred             CCCeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-CCEEEEeCCCCEEEECCCCcEEeEECCCCEEEEEEECC
Confidence            457899999999999888888888999999999999999 999999999999999999999999944 5888887544

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.43  E-value=5.1e-13  Score=107.97  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=66.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE------EEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW------YPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~------~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+.+..++++||..++.|.|+..+|.+|||+|++.+.++|+.      +.+++||++|+++|++|++.|.|++++++++.
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            456778899999999874443456999999999999999999      99999999999999999999999999999876


Q ss_pred             e
Q 025000          252 K  252 (259)
Q Consensus       252 k  252 (259)
                      .
T Consensus       122 ~  122 (148)
T 2oa2_A          122 Y  122 (148)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.42  E-value=3.2e-13  Score=124.99  Aligned_cols=76  Identities=13%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEE-EEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGI-YRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~-~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      ..+.+++.+|+||+.++. |.|.+++.+|||+|+|. +.+||+.+++++||++++|+++.|++.|+|+++++||+.-|
T Consensus       101 ~~L~a~~~~l~PG~~~~~-HrH~~~ev~~VleG~G~~~~vdG~~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v~D  177 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPE-HRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLD  177 (368)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEECSSCEEEEEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             CceEEEEEEECCCCccCc-eecccceEEEEEecceEEEEECCEEEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEecc
Confidence            468899999999999997 67778899999999995 89999999999999999999999999999999999998776

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.41  E-value=2.6e-12  Score=98.49  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=70.7

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      +++..+.|...   ..+.+..+++.||..++. |.|..+|.+|||+|++.+.++|+.+.+++||++|+++|++|++.|.+
T Consensus        27 ~~~~~~~l~~~---~~~~~~~~~~~~g~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~  102 (115)
T 1yhf_A           27 DQMLSRTLVQR---QDLGITVFSLDKGQEIGR-HSSPGDAMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVE  102 (115)
T ss_dssp             TCEEEEEEEEE---TTEEEEEEEECTTCEEEE-ECCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTSCEEEEESS
T ss_pred             CCeEEEEEEeC---CceEEEEEEECCCCccCC-EECCCcEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECC
Confidence            34566666642   245677899999999986 67778899999999999999999999999999999999999999998


Q ss_pred             CccEEEEEEe
Q 025000          243 KTRTRYLLYK  252 (259)
Q Consensus       243 ~e~~~fi~~k  252 (259)
                      +..+..++++
T Consensus       103 ~~~~~~v~~~  112 (115)
T 1yhf_A          103 AFQMLLVVVK  112 (115)
T ss_dssp             CEEEEEEEEC
T ss_pred             CceEEEEEEc
Confidence            5544444443

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.40  E-value=1.6e-12  Score=106.43  Aligned_cols=89  Identities=15%  Similarity=0.221  Sum_probs=75.1

Q ss_pred             CcceEEEEecCC-CC-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEEeCCcEEEeC
Q 025000           47 TNTLGAYLITPA-MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLP  115 (259)
Q Consensus        47 ~~~~~~~l~sp~-~g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g---------e~~~L~~Gd~i~~p  115 (259)
                      ++...++++++. .| ..+.+++++++||+..+.|.|..+|++||++|++++.+ ++         +++.|++||++++|
T Consensus        23 ~G~~~~~l~~~~~~g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-~~~~~~~~~~~~~~~l~~Gd~i~ip  101 (163)
T 1lr5_A           23 EGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM-GSSSLKYPGQPQEIPFFQNTTFSIP  101 (163)
T ss_dssp             TTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEE-CCSSSSSCCSCEEEEECTTEEEEEC
T ss_pred             CCcceEEEeccccCCCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEE-CCccccccCccEEEEeCCCCEEEEC
Confidence            345556666663 44 47999999999999888887888999999999999999 88         89999999999999


Q ss_pred             CCCcEEEEeC---CeEEEEEEEEe
Q 025000          116 PNFAHSLRAE---GSATLVVFERR  136 (259)
Q Consensus       116 ~~~~H~~~N~---~~a~~l~v~~~  136 (259)
                      ++.+|+++|.   ++++++++..+
T Consensus       102 ~~~~H~~~n~~~~~~~~~l~i~~~  125 (163)
T 1lr5_A          102 VNDPHQVWNSDEHEDLQVLVIISR  125 (163)
T ss_dssp             TTCCEEEECCCSSSCEEEEEEEES
T ss_pred             CCCcEEeEeCCCCCCEEEEEEECC
Confidence            9999999994   37888888543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.40  E-value=7.3e-13  Score=124.75  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcEEEeCCCCceeEEeCC-CccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k  252 (259)
                      .+.+.+++++||+.++.| ||..+|.+|||+|+|++.+    +++++.|++||++++|+|..|+++|+| +++|++|++.
T Consensus        48 ~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~  126 (416)
T 1uij_A           48 DYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA  126 (416)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEe
Confidence            489999999999999986 8889999999999999997    689999999999999999999999995 9999999998


Q ss_pred             ec
Q 025000          253 DV  254 (259)
Q Consensus       253 ~~  254 (259)
                      +.
T Consensus       127 ~~  128 (416)
T 1uij_A          127 IP  128 (416)
T ss_dssp             EE
T ss_pred             cc
Confidence            85

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.40  E-value=9.4e-13  Score=115.43  Aligned_cols=82  Identities=9%  Similarity=-0.003  Sum_probs=70.3

Q ss_pred             eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe--------CCE------------EEEccCCcEEE
Q 025000          170 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--------GDS------------WYPVQAGDVLW  229 (259)
Q Consensus       170 l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~--------~g~------------~~~v~~GD~i~  229 (259)
                      +.+.+.+..+.+..++++||+..+.|.|+..+|.+|||+|++.+++        +++            ++.+++||+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~  113 (239)
T 2xlg_A           34 ASCSAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIY  113 (239)
T ss_dssp             EEEEETTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEE
T ss_pred             eccCCCCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEE
Confidence            3344445677788899999999887545447799999999999999        999            99999999999


Q ss_pred             eCCCCceeEEeCCCccEEE-EEE
Q 025000          230 MAPFVPQWYAALGKTRTRY-LLY  251 (259)
Q Consensus       230 ~~~~~~H~~~n~G~e~~~f-i~~  251 (259)
                      +++|++|++.|.|++++++ +++
T Consensus       114 iP~g~~H~~~N~~~~~~~~~l~~  136 (239)
T 2xlg_A          114 SPNHYMHGFVNPTDKTLPIVFVW  136 (239)
T ss_dssp             ECTTEEEEEECCSSSCEEEEEEE
T ss_pred             ECCCCCEEEEeCCCCCEEEEEEE
Confidence            9999999999999999988 554

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.39  E-value=3.1e-12  Score=103.34  Aligned_cols=76  Identities=18%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcE------EEEeCCcEEEeCCCCcEEEEe--CCeEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVS------SKLMVDSYTYLPPNFAHSLRA--EGSATL  130 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~------~~L~~Gd~i~~p~~~~H~~~N--~~~a~~  130 (259)
                      +..+.+++++++||+..+.|.|. .+|++||++|++++.+ +++.      +.|++||+++||+|.+|+++|  ++++++
T Consensus        40 ~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~  118 (148)
T 2oa2_A           40 GDHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQM-GHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKL  118 (148)
T ss_dssp             CSSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEE-ESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEE
T ss_pred             CCceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEE-CCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEE
Confidence            45788999999999988888664 7899999999999999 8888      999999999999999999999  457888


Q ss_pred             EEEEEe
Q 025000          131 VVFERR  136 (259)
Q Consensus       131 l~v~~~  136 (259)
                      +++..+
T Consensus       119 l~i~~~  124 (148)
T 2oa2_A          119 YSIYAP  124 (148)
T ss_dssp             EEEEES
T ss_pred             EEEECC
Confidence            887543

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.39  E-value=2e-12  Score=109.31  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             eCCCCCcceEEEEEEecCCcc------cCcceeec---cceEEEEEEceEEEEeCCEE-----EEccCCcEEEeCCCCce
Q 025000          171 LPQAVPFDFNIHIMDFQPGDF------LNVKEVHY---NQHGLLLLEGQGIYRLGDSW-----YPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       171 ~p~~~~~~~~~~~~t~~PG~~------~~~~~~H~---~eh~~~il~G~g~~~~~g~~-----~~v~~GD~i~~~~~~~H  236 (259)
                      +..+....+.+.+.+++||+.      .+. |.|.   .+|.+|||+|++.+.++|+.     +.+++||+++++++.+|
T Consensus        59 ~~~~~~~~l~~~~~~l~PG~~~~E~~~~~~-H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H  137 (190)
T 1x82_A           59 EQEEKEGDLNFATTVLYPGKVGKEFFFTKG-HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAH  137 (190)
T ss_dssp             CCCSCTTCEEEEEEEECCCEETTEECBCCC-BBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEE
T ss_pred             cCCCCCCCeEEEEEEECCCcCCCcccCCCC-eECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeE
Confidence            443334466777889999998      555 4453   47999999999999999987     99999999999999999


Q ss_pred             eEEeCCCccEEEEEEe
Q 025000          237 WYAALGKTRTRYLLYK  252 (259)
Q Consensus       237 ~~~n~G~e~~~fi~~k  252 (259)
                      ++.|+|+++++|++.-
T Consensus       138 ~~~N~g~~~~~~l~v~  153 (190)
T 1x82_A          138 RTVNIGDEPFIFLAIY  153 (190)
T ss_dssp             EEEECSSSCEEEEEEE
T ss_pred             EEEECCcccEEEEEEE
Confidence            9999999999999764

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.38  E-value=3.3e-12  Score=103.42  Aligned_cols=86  Identities=17%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             ceEEEEecCCC-CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEEeCCCCcEEEEe--
Q 025000           49 TLGAYLITPAM-GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYLPPNFAHSLRA--  124 (259)
Q Consensus        49 ~~~~~l~sp~~-g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~~p~~~~H~~~N--  124 (259)
                      ...+.|..+.. +..+.+++++++||+..+.|.|..+|++||++|++++++ ++++ +.|++||++++|++.+|+++|  
T Consensus        33 ~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-~~~~~~~l~~Gd~i~ip~~~~H~~~n~~  111 (147)
T 2f4p_A           33 VWVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-RGKPARILKKGDVVEIPPNVVHWHGAAP  111 (147)
T ss_dssp             EEEEEEECCTTCSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE-TTSCCEEEETTCEEEECTTCCEEEEEBT
T ss_pred             EEEEEEECCCCCCCcEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEE-CCEEEEEECCCCEEEECCCCcEEeEeCC
Confidence            35555666555 568999999999999888887888999999999999999 9998 999999999999999999999  


Q ss_pred             CCeEEEEEEEE
Q 025000          125 EGSATLVVFER  135 (259)
Q Consensus       125 ~~~a~~l~v~~  135 (259)
                      +++++++++..
T Consensus       112 ~~~~~~l~v~~  122 (147)
T 2f4p_A          112 DEELVHIGIST  122 (147)
T ss_dssp             TBCEEEEEEEC
T ss_pred             CCCEEEEEEEc
Confidence            45778877753

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.38  E-value=2.1e-12  Score=119.18  Aligned_cols=105  Identities=15%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             eeccCCCCCCcccCC------ceEEEEEee---CC-CC----CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEE
Q 025000          148 IVGSTDKQPLLETPG------EVFQLRKLL---PQ-AV----PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY  213 (259)
Q Consensus       148 ~v~~~~di~~~~~~g------~~~~~~~l~---p~-~~----~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~  213 (259)
                      +.-.|+++...-.+.      ++...+.+.   |. ..    ...+.+.+++++||+..+. |.|..+|.+|||+|+|.+
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~~~~~~rr~l~~~np~~~g~~~~~~~l~~~~~~l~PG~~~~~-H~H~~~e~~yVl~G~g~~  133 (354)
T 2d40_A           55 AYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPS-HRHNQSALRFIVEGKGAF  133 (354)
T ss_dssp             EEECSTTTCCCC-----------------EECCSSCTTSCCSSSSCEEEEEEECTTCEEEE-EEESSCEEEEEEECSSCE
T ss_pred             ceeCHHHHHHHHHHhhhccCcCCCCEEEEEecCCCcCCccccCCcEEEEEEEECCCCCcCC-eecCcceEEEEEEEEEEE
Confidence            455677766554431      222344432   33 11    2367889999999999986 677888999999999999


Q ss_pred             -EeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          214 -RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       214 -~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                       .+||+.+++++||+++++++++|++.|.|+++++||++.|
T Consensus       134 t~v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d  174 (354)
T 2d40_A          134 TAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLD  174 (354)
T ss_dssp             EEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEEC
T ss_pred             EEECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEEC
Confidence             9999999999999999999999999999999999998865

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.38  E-value=2.4e-12  Score=105.82  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             cceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEE--ceEEEEeCCEEEEc
Q 025000          145 TEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE--GQGIYRLGDSWYPV  222 (259)
Q Consensus       145 p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~--G~g~~~~~g~~~~v  222 (259)
                      ...-+-+++++|..+..+|. ..|.|...+ .+-+.+.++++  |...+.|.|+..+|.+|||+  |+|.+.+||++++|
T Consensus        15 ~~~~iv~~~ei~~~~~~~G~-srR~l~~~~-~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~idge~~~l   90 (157)
T 4h7l_A           15 AMPQMISLSEIEAVACPCGW-AQRAFGHDA-GTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIELNGQSYPL   90 (157)
T ss_dssp             TSCEEEETTTSCCEEETTEE-EEEESCGGG-CCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEETTEEEEC
T ss_pred             cCceEEEhhhCCCccCCCCe-eeEEeEcCC-CCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEECCEEEEe
Confidence            44557779999998887653 455555543 23334445554  55556644445679999999  99999999999999


Q ss_pred             cCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          223 QAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      ++||++++++|+.|++.  |  +++||+.
T Consensus        91 ~~GD~v~IPpg~~H~i~--g--~l~~L~I  115 (157)
T 4h7l_A           91 TKLLAISIPPLVRHRIV--G--EATIINI  115 (157)
T ss_dssp             CTTEEEEECTTCCEEEE--S--CEEEEEE
T ss_pred             CCCCEEEECCCCeEeeE--C--CEEEEEE
Confidence            99999999999999997  3  7999986

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.38  E-value=1.2e-12  Score=109.23  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      ....+++++|+||+..+. |.|..+|.+|||+|+..+.++ |+++.+++||++ ++++.+|+++|.|++++++|+.
T Consensus        77 ~G~~~~~v~l~PG~~~~~-H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPM-HRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             CSEEEEEEEECTTCBCCC-BCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCC-eecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            356778999999999997 567777888999999999999 899999999999 9999999999999999999874

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.9e-12  Score=107.46  Aligned_cols=74  Identities=9%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             ceEEEEEEecC-CcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          178 DFNIHIMDFQP-GDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       178 ~~~~~~~t~~P-G~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+.+-+++|+| |+..+.+++|..|+.+|||+|+..++++|+.+.+++||.+|++++.+|.++|.|++++++|.-
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            45555789999 877777778888999999999999999999999999999999999999999999999998863

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.37  E-value=1.2e-12  Score=123.92  Aligned_cols=76  Identities=12%  Similarity=0.145  Sum_probs=70.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC----CEEEEccCCcEEEeCCCCceeEEeCC-CccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG----DSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~----g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k  252 (259)
                      ++.+..++|+||+.++.| ||..+|.+|||+|+|++.+.    ++.+.|++||++++|+|..||+.|+| +++|++|+..
T Consensus        60 ~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~  138 (434)
T 2ea7_A           60 NYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLA  138 (434)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEe
Confidence            489999999999999986 88899999999999999873    68999999999999999999999999 8999999987


Q ss_pred             ec
Q 025000          253 DV  254 (259)
Q Consensus       253 ~~  254 (259)
                      |.
T Consensus       139 ~~  140 (434)
T 2ea7_A          139 IP  140 (434)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.37  E-value=6.3e-12  Score=96.51  Aligned_cols=79  Identities=19%  Similarity=0.250  Sum_probs=65.9

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      ..+.|...+   .+.+..+++.||..++. |.|..+|.+|||+|++.+.++|+.+.+++||+++++++++|++.|.  ++
T Consensus        28 ~~~~l~~~~---~~~~~~~~~~~g~~~~~-H~h~~~e~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~--~~  101 (114)
T 2ozj_A           28 LSMALAQSD---RVQISLFSFADGESVSE-EEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGK--GR  101 (114)
T ss_dssp             EEEECEECS---SEEEEEEEEETTSSCCC-BCCSSCEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCCBEEEEE--EE
T ss_pred             EEEEEEcCC---CceEEEEEECCCCcccc-EECCCCeEEEEEeCEEEEEECCEEEEecCCCEEEECCCCcEEEEeC--CC
Confidence            344455332   25577888999999986 6788889999999999999999999999999999999999999997  46


Q ss_pred             EEEEE
Q 025000          246 TRYLL  250 (259)
Q Consensus       246 ~~fi~  250 (259)
                      ++|++
T Consensus       102 ~~~~~  106 (114)
T 2ozj_A          102 FKMLQ  106 (114)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            66654

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.36  E-value=3.7e-12  Score=111.27  Aligned_cols=87  Identities=11%  Similarity=0.079  Sum_probs=75.7

Q ss_pred             eEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEE-eCCCCceeEEeCC
Q 025000          164 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW-MAPFVPQWYAALG  242 (259)
Q Consensus       164 ~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~-~~~~~~H~~~n~G  242 (259)
                      ++..+.|...+    ..|.+++++||..++. |.|.+++.+|||+|++.+.++|+.+.+++||++| +++|++|++.|.|
T Consensus        23 Gv~~~~l~~~~----~~~~~~~~~pg~~~~~-H~H~~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~   97 (243)
T 3h7j_A           23 GVRQYSTVRGD----TEVLMSYVPPHTNVEP-HQHKEVQIGMVVSGELMMTVGDVTRKMTALESAYIAPPHVPHGARNDT   97 (243)
T ss_dssp             SCEEEEEEETT----EEEEEEEECTTEEEEE-ECCSSEEEEEEEESEEEEEETTEEEEEETTTCEEEECTTCCEEEEECS
T ss_pred             CeEEEEEECCC----CEEEEEEECCCCccCC-EECCCcEEEEEEEeEEEEEECCEEEEECCCCEEEEcCCCCcEeeEeCC
Confidence            45566554332    3577888999999986 7888999999999999999999999999999998 9999999999999


Q ss_pred             CccEEEEEEeecC
Q 025000          243 KTRTRYLLYKDVN  255 (259)
Q Consensus       243 ~e~~~fi~~k~~n  255 (259)
                      ++++++|-.|+..
T Consensus        98 ~~~~~~l~i~r~~  110 (243)
T 3h7j_A           98 DQEVIAIDIKRLK  110 (243)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCcEEEEEEeccC
Confidence            9999999988764

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.34  E-value=6e-12  Score=102.93  Aligned_cols=85  Identities=7%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          162 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       162 g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      ++.+.++.|...+.+..+.+.+++++ |+..+  .||..+|.+|||+|+..+.++|+.+.+++||++|+++|.+|.+.|.
T Consensus        49 ~~~v~i~~l~s~~~~~~~s~g~~~~e-~~~~~--~~~~~eE~~yVLeG~~~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~  125 (151)
T 4axo_A           49 SDVVYTKDLFTLEESPRLGCGMMEMK-ETTFD--WTLNYDEIDYVIDGTLDIIIDGRKVSASSGELIFIPKGSKIQFSVP  125 (151)
T ss_dssp             TCCEEEEECSCTTTCSSCEEEEEEEE-EEEEE--EECSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEE
T ss_pred             CCCEEEEEeecCCCCCcEEEEEEEEc-Ccccc--EeCCCcEEEEEEEeEEEEEECCEEEEEcCCCEEEECCCCEEEEEeC
Confidence            37788998886555668888899998 66654  4667889999999999999999999999999999999999999998


Q ss_pred             CCccEEEEEE
Q 025000          242 GKTRTRYLLY  251 (259)
Q Consensus       242 G~e~~~fi~~  251 (259)
                        +++++|+-
T Consensus       126 --~~a~~l~V  133 (151)
T 4axo_A          126 --DYARFIYV  133 (151)
T ss_dssp             --EEEEEEEE
T ss_pred             --CCEEEEEE
Confidence              67777763

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.33  E-value=3.6e-12  Score=120.95  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=69.3

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcEEEeCCCCceeEEeCC-CccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~k  252 (259)
                      .+.+.+++++||+..+.| ||..+|.+|||+|+|++.+    |++.+.+++||++++|+|.+||++|+| ++++++|+..
T Consensus        85 ~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~  163 (445)
T 2cav_A           85 DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  163 (445)
T ss_dssp             TEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEe
Confidence            499999999999999986 8889999999999999986    248999999999999999999999999 8999999877


Q ss_pred             e
Q 025000          253 D  253 (259)
Q Consensus       253 ~  253 (259)
                      |
T Consensus       164 ~  164 (445)
T 2cav_A          164 I  164 (445)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.33  E-value=9.9e-12  Score=104.97  Aligned_cols=80  Identities=10%  Similarity=0.102  Sum_probs=68.2

Q ss_pred             ecCCCCCcEEEEEEEecCCCc------CCCCCC---CceEEEEEEECEEEEEEcCCcE-----EEEeCCcEEEeCCCCcE
Q 025000           55 ITPAMGSHFVMYLANMQENAR------SALPPH---DVERFIFVVQGSAMLTNASGVS-----SKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        55 ~sp~~g~~f~~~~~~l~Pg~~------~~~h~~---~~Eef~yVl~G~l~v~v~~ge~-----~~L~~Gd~i~~p~~~~H  120 (259)
                      ..|.....+.+.+++++||+.      .+.|.|   +.+|++||++|++++.+ ++++     +.|++||++++|++.+|
T Consensus        59 ~~~~~~~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i-~~~~g~~~~~~l~~GD~v~ip~g~~H  137 (190)
T 1x82_A           59 EQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLL-QTPEGDAKWISMEPGTVVYVPPYWAH  137 (190)
T ss_dssp             CCCSCTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEE-ECTTCCEEEEEECTTCEEEECTTCEE
T ss_pred             cCCCCCCCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEE-cCcCCcEEEEEECCCcEEEECCCCeE
Confidence            667666788999999999987      556645   45899999999999999 7877     99999999999999999


Q ss_pred             EEEe--CCeEEEEEEEE
Q 025000          121 SLRA--EGSATLVVFER  135 (259)
Q Consensus       121 ~~~N--~~~a~~l~v~~  135 (259)
                      +++|  +++++++++..
T Consensus       138 ~~~N~g~~~~~~l~v~~  154 (190)
T 1x82_A          138 RTVNIGDEPFIFLAIYP  154 (190)
T ss_dssp             EEEECSSSCEEEEEEEE
T ss_pred             EEEECCcccEEEEEEEC
Confidence            9999  55788887753

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.33  E-value=3.9e-12  Score=106.44  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC----CcEEEEeCCcEEEeCCCCcEEEEe--CC-eEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS----GVSSKLMVDSYTYLPPNFAHSLRA--EG-SATLVVF  133 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~----ge~~~L~~Gd~i~~p~~~~H~~~N--~~-~a~~l~v  133 (259)
                      ..+.+.+++++||+..++|++..+|++||++|++++++ .    ++++.|++||+++||+|.+|.++|  ++ +++++++
T Consensus        39 ~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v-~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v  117 (178)
T 1dgw_A           39 RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL-VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEE-EETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEE-EeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEE
Confidence            47999999999999887775678999999999999998 5    788999999999999999999999  33 6788887


Q ss_pred             EEe
Q 025000          134 ERR  136 (259)
Q Consensus       134 ~~~  136 (259)
                      ..+
T Consensus       118 ~~~  120 (178)
T 1dgw_A          118 AIT  120 (178)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            654

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.32  E-value=6.4e-12  Score=100.56  Aligned_cols=83  Identities=18%  Similarity=0.141  Sum_probs=67.5

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      ..+..+.|...+.. .+.+.+++++|| ..  +.||..+|.+|||+|++.++++|+.+.+++||++++++|.+|.+.|. 
T Consensus        42 ~~~~~~~L~~~~~~-~~~~~~~~~~pG-~~--~~h~~~~E~~~VLeG~~~l~~~g~~~~l~~GD~i~~p~g~~h~~~~~-  116 (133)
T 2pyt_A           42 CVGLTDLVTEQDGS-SMAAGFMQWDNA-FF--PWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTP-  116 (133)
T ss_dssp             CCEEEEEECGGGTC-SSEEEEEEEEEE-EE--EEECSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEE-
T ss_pred             ceEEEEEEecCCCC-cEEEEEEEECCC-Cc--cccCCCCEEEEEEECEEEEEECCEEEEECCCcEEEECCCCEEEEEeC-
Confidence            34466666654444 788889999999 33  34556789999999999999999999999999999999999999984 


Q ss_pred             CccEEEEEE
Q 025000          243 KTRTRYLLY  251 (259)
Q Consensus       243 ~e~~~fi~~  251 (259)
                       +++++|+-
T Consensus       117 -~~~~~l~v  124 (133)
T 2pyt_A          117 -TSVRFLYV  124 (133)
T ss_dssp             -EEEEEEEE
T ss_pred             -CCEEEEEE
Confidence             56776653

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.31  E-value=4.9e-12  Score=95.74  Aligned_cols=75  Identities=13%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCc-eEE-EEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDV-ERF-IFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  135 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~-Eef-~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~  135 (259)
                      +..+.+.+++++||...+.|.|.. .|+ +||++|++++.+ + |+++.|++||++++|++.+|+++|.++++++++..
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~-~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~~~~  107 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG-DGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLVTIA  107 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC-GGGCEEEECTTEEEEEETTSCEEEEESSSEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe-CCCEEEEECCCCEEEeCCCCcEEEEEcCCcEEEEEEC
Confidence            457888999999998877787764 466 899999999999 8 79999999999999999999999977788877753

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.31  E-value=2e-11  Score=95.31  Aligned_cols=74  Identities=12%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  134 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~  134 (259)
                      ...|.++..+++||...+.|.|...|++||++|++++.+ +|+++.|++||.+++|++..|+++|  +++++++++.
T Consensus        31 ~~~~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i~  106 (128)
T 4i4a_A           31 NTPFGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI-NDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIW  106 (128)
T ss_dssp             CCSSEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CCCcEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE-CCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            357889999999999888888899999999999999999 9999999999999999999999999  4567777664

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.31  E-value=2.3e-11  Score=111.50  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             eeccCCCCCCcccCCceEEEEEeeCCCC--CcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEe---CC--EE
Q 025000          148 IVGSTDKQPLLETPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL---GD--SW  219 (259)
Q Consensus       148 ~v~~~~di~~~~~~g~~~~~~~l~p~~~--~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~---~g--~~  219 (259)
                      +.-++++.+....+||.  ++.+...+.  ...+.+..++++||+..+. |.|. .+|.+|||+|++.+.+   ||  +.
T Consensus        21 ~~~~~~~~~~~~~~~G~--~~~~~~~~~p~~~~~~~~~~~l~pg~~~~~-H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~   97 (361)
T 2vqa_A           21 FTYAFSKTPLVLYDGGT--TKQVGTYNFPVSKGMAGVYMSLEPGAIREL-HWHANAAEWAYVMEGRTRITLTSPEGKVEI   97 (361)
T ss_dssp             SEECGGGSCCEEETTEE--EEEESTTTCTTCCSCEEEEEEECTTCEEEE-EECTTCCEEEEEEESEEEEEEECTTSCEEE
T ss_pred             eEEEcccCCceecCCce--EEEeChhhCccccceeeEEEEEcCCCCCCc-eeCCCCCEEEEEEEeEEEEEEEeCCCcEEE
Confidence            55567777665555543  444544332  2356788999999998875 6677 7899999999999999   76  68


Q ss_pred             EEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecC
Q 025000          220 YPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       220 ~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                      +.+++||++++++|.+|++.|.|+++++||+..+-.
T Consensus        98 ~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~  133 (361)
T 2vqa_A           98 ADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDG  133 (361)
T ss_dssp             EEEETTEEEEECTTCEEEEEECSSSCEEEEEEESST
T ss_pred             EEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCC
Confidence            999999999999999999999999999999876654

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.29  E-value=7.9e-12  Score=97.62  Aligned_cols=84  Identities=10%  Similarity=0.200  Sum_probs=68.3

Q ss_pred             EEEecCCC-CCcEEEEEEEecCCCcCC-CCCCCceE-EEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CC
Q 025000           52 AYLITPAM-GSHFVMYLANMQENARSA-LPPHDVER-FIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EG  126 (259)
Q Consensus        52 ~~l~sp~~-g~~f~~~~~~l~Pg~~~~-~h~~~~Ee-f~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~  126 (259)
                      .+++++.. +..+.+.+.+++||+..+ .|.|...| ++||++|++++.+ +++++.|++||++++|++.+|+++|  ++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i-~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~   92 (125)
T 3cew_A           14 RVELHDSLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI-DGEKIELQAGDWLRIAPDGKRQISAASDS   92 (125)
T ss_dssp             CEECHHHHTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE-TTEEEEEETTEEEEECTTCCEEEEEBTTB
T ss_pred             eEEEEcccCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE-CCEEEEeCCCCEEEECCCCcEEEEcCCCC
Confidence            34455444 357888999999998887 67676655 5559999999999 9999999999999999999999999  45


Q ss_pred             eEEEEEEEEe
Q 025000          127 SATLVVFERR  136 (259)
Q Consensus       127 ~a~~l~v~~~  136 (259)
                      +++++++..+
T Consensus        93 ~~~~~~i~~~  102 (125)
T 3cew_A           93 PIGFLCIQVK  102 (125)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEcC
Confidence            7888887544

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.29  E-value=7.2e-12  Score=95.25  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=57.2

Q ss_pred             EEEEecCCCcCCCCCCCc-eEEEEEEECEEEEEEcCC-cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE
Q 025000           66 YLANMQENARSALPPHDV-ERFIFVVQGSAMLTNASG-VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  135 (259)
Q Consensus        66 ~~~~l~Pg~~~~~h~~~~-Eef~yVl~G~l~v~v~~g-e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~  135 (259)
                      ..+.+.||. ...|.|.. +|++||++|++++++ +| +++.|++||++++|+|.+|+++|.++++++++..
T Consensus        31 ~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~-~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~i~~  100 (107)
T 2i45_A           31 FHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDF-ADGGSMTIREGEMAVVPKSVSHRPRSENGCSLVLIEL  100 (107)
T ss_dssp             EEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEE-TTSCEEEECTTEEEEECTTCCEEEEEEEEEEEEEEEC
T ss_pred             EEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEE-CCCcEEEECCCCEEEECCCCcEeeEeCCCeEEEEEEC
Confidence            445666775 45777776 999999999999999 88 9999999999999999999999977888888753

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.27  E-value=1.4e-11  Score=106.50  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  134 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~  134 (259)
                      ..+.+.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|++.+|+++| .++++++++.
T Consensus       151 ~~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~~  224 (227)
T 3rns_A          151 PNLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-DGKPFIVKKGESAVLPANIPHAVEAETENFKMLLIL  224 (227)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-TTEEEEEETTEEEEECTTSCEEEECCSSCEEEEEEE
T ss_pred             CCeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-CCEEEEECCCCEEEECCCCcEEEEeCCCCEEEEEEE
Confidence            36888999999999888888889999999999999999 9999999999999999999999999 9999988874

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.27  E-value=3.2e-11  Score=91.21  Aligned_cols=67  Identities=27%  Similarity=0.376  Sum_probs=59.0

Q ss_pred             ceEEEEEEecCCcccCcceeecc-ceE-EEEEEceEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYN-QHG-LLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~-eh~-~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      .+.+..++++||..++. |.|.. .+. +|||+|++.+.++ |+.+.+++||++++++|++|++.|.++..
T Consensus        32 ~~~~~~~~~~~g~~~~~-H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~  101 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPV-HSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK  101 (110)
T ss_dssp             SCEEEEEEECTTCEEEE-ECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEEETTSCEEEEESSSEE
T ss_pred             CEEEEEEEECCCCcCCc-ccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE
Confidence            45677889999999986 66765 476 8999999999999 79999999999999999999999998744

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.25  E-value=1.1e-11  Score=108.69  Aligned_cols=78  Identities=14%  Similarity=0.249  Sum_probs=66.1

Q ss_pred             CCCCCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEc-------CCc------------EEEEeCCcEEEeCC
Q 025000           57 PAMGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNA-------SGV------------SSKLMVDSYTYLPP  116 (259)
Q Consensus        57 p~~g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~-------~ge------------~~~L~~Gd~i~~p~  116 (259)
                      ...+..|+++.++++||+..+.|.|. .+|++|||+|++++++.       +++            ++.|++||++++|+
T Consensus        37 ~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~  116 (239)
T 2xlg_A           37 SAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPN  116 (239)
T ss_dssp             EETTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECT
T ss_pred             CCCCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECC
Confidence            34577899999999999988888554 89999999999999971       466            89999999999999


Q ss_pred             CCcEEEEe--CCeEEE-EEEE
Q 025000          117 NFAHSLRA--EGSATL-VVFE  134 (259)
Q Consensus       117 ~~~H~~~N--~~~a~~-l~v~  134 (259)
                      |.+|+++|  ++++++ +++.
T Consensus       117 g~~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          117 HYMHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             TEEEEEECCSSSCEEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEEEE
Confidence            99999999  557888 4443

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.25  E-value=2e-11  Score=96.31  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=57.0

Q ss_pred             CCcEEEE--EEEecCCCcCCCCCCCc-eEEEEEEECEEEEEEcCC-cEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEE
Q 025000           60 GSHFVMY--LANMQENARSALPPHDV-ERFIFVVQGSAMLTNASG-VSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE  134 (259)
Q Consensus        60 g~~f~~~--~~~l~Pg~~~~~h~~~~-Eef~yVl~G~l~v~v~~g-e~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~  134 (259)
                      +..+.+.  .+.++||+..+.|.|.. +|++||++|++++.+ +| +++.|++||++++|+|.+|+++| ...++++++.
T Consensus        38 ~g~~~~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~-~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~~~l~~~  116 (134)
T 2o8q_A           38 GGMFGAHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY-EDIGAVMLEAGGSAFQPPGVRHRELRHSDDLEVLEIV  116 (134)
T ss_dssp             TTSCEEEEEEECC-----CCCEEECCSCEEEEEEESEEEEEE-TTTEEEEEETTCEEECCTTCCEEEEEECTTCEEEEEE
T ss_pred             CCceEEEEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE-CCcEEEEecCCCEEEECCCCcEEeEeCCCCeEEEEEE
Confidence            4455544  44455777777887776 999999999999999 88 99999999999999999999999 4467877653

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.23  E-value=3e-11  Score=102.70  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             cceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEeC------CE--EEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLG------DS--WYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~------g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                      ..+.+.+++++||+..+. |.|.. +|.+|||+|++.+.+.      ++  ++.+++||++++++|.+|++.|.|+++++
T Consensus        70 ~~~~~~~~~l~pg~~~~~-H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~  148 (201)
T 1fi2_A           70 LGVSMNRVDFAPGGTNPP-HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             SSCEEEEEEECTTCEEEE-EECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEE
T ss_pred             CceEEEEEEECCCCCCCC-eECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEE
Confidence            457788999999999986 67775 6999999999999885      55  89999999999999999999999999999


Q ss_pred             EEEEee
Q 025000          248 YLLYKD  253 (259)
Q Consensus       248 fi~~k~  253 (259)
                      +|+.-+
T Consensus       149 ~l~v~~  154 (201)
T 1fi2_A          149 MVVSFN  154 (201)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            998644

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.23  E-value=3.5e-11  Score=103.43  Aligned_cols=90  Identities=18%  Similarity=0.113  Sum_probs=76.7

Q ss_pred             eEEEEecCCC---CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEe-
Q 025000           50 LGAYLITPAM---GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        50 ~~~~l~sp~~---g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      ....++.|.-   ..++...++.++||...+.|.|..||++|||+|++++.+ + +++.++++||++++|+|++|.+++ 
T Consensus       116 a~~elvGP~g~~~s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v-~~g~~~~l~pGd~v~ipsgv~Ha~rt~  194 (217)
T 4b29_A          116 GWFELAGPSGHFLTQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHL-RNAPDLMLEPGQTRFHPANAPHAMTTL  194 (217)
T ss_dssp             EEEEEEETTSSEECSSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEE-TTSCCEEECTTCEEEECTTCCEEEECC
T ss_pred             eEEEEECCCCCCCCCeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEE-CCCCEEecCCCCEEEcCCCCceeEEEC
Confidence            4566777742   568999999999999999998889999999999999999 6 899999999999999999999998 


Q ss_pred             CCeEEEEEEEEeccccC
Q 025000          125 EGSATLVVFERRYASLE  141 (259)
Q Consensus       125 ~~~a~~l~v~~~y~p~~  141 (259)
                      ++++..+|+- ...|+.
T Consensus       195 dePllalwvW-~G~~~~  210 (217)
T 4b29_A          195 TDPILTLVLW-RGAGLG  210 (217)
T ss_dssp             SSCEEEEEEE-ESTTTT
T ss_pred             CccEEEEEEE-eCCCCC
Confidence            7777766663 555554

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.22  E-value=6.8e-11  Score=91.37  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             cEEEEEEEecCCCcCCC---CCCCceEEEEEEECEEEEEEcCCcE--EEEeCCcEEEeCCCCcEEEEeCC---eEEEEEE
Q 025000           62 HFVMYLANMQENARSAL---PPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFAHSLRAEG---SATLVVF  133 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~---h~~~~Eef~yVl~G~l~v~v~~ge~--~~L~~Gd~i~~p~~~~H~~~N~~---~a~~l~v  133 (259)
                      .+..-++. .+|...+.   ++|..+|++|||+|++++++ +|++  +.|++||+++||++.+|+++|.+   ++.++++
T Consensus        30 ~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~-~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v  107 (112)
T 2opk_A           30 GLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIEC-EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAV  107 (112)
T ss_dssp             TEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEE-TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEE-CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEE
Confidence            45444443 45554433   46789999999999999999 8988  99999999999999999999922   4544544

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.22  E-value=4.1e-11  Score=108.26  Aligned_cols=84  Identities=24%  Similarity=0.338  Sum_probs=72.5

Q ss_pred             EEEEee-CCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          166 QLRKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       166 ~~~~l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      ..+.|. +.+.+..+.+..+++.||+..+. |.|. .+|.+|||+|++.++++|+.+.+++||+++++++++|++.|.|+
T Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~-h~H~~~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~  110 (337)
T 1y3t_A           32 VATVMANGRSTGDLFEIVLLSGGKGDAFPL-HVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSH  110 (337)
T ss_dssp             EEEEEECHHHHTSSEEEEEEEECTTCEEEE-EECTTCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECST
T ss_pred             EEEEEeecCCCCCeEEEEEEEeCCCCCCCc-eeCCCceEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence            455566 34345677888999999999887 6666 77999999999999999999999999999999999999999998


Q ss_pred             ccEEEEEE
Q 025000          244 TRTRYLLY  251 (259)
Q Consensus       244 e~~~fi~~  251 (259)
                       +++|++.
T Consensus       111 -~~~~~~~  117 (337)
T 1y3t_A          111 -RTRLVSY  117 (337)
T ss_dssp             -TEEEEEE
T ss_pred             -CeEEEEE
Confidence             6888876

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.21  E-value=4.9e-11  Score=94.02  Aligned_cols=69  Identities=13%  Similarity=-0.017  Sum_probs=54.7

Q ss_pred             EEEEEecCCcccCcceeecc-ceEEEEEEceEEEEeCC-EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          181 IHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD-SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       181 ~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~g-~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +-.+++.||+..+. |.|.. +|.+|||+|++.+.++| +.+.+++||++++++|++|++.|.+++ ++||+.
T Consensus        45 ~~~~~~~~g~~~~~-H~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~  115 (134)
T 2o8q_A           45 VIRAIPGKEAKPTW-HTHTVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEI  115 (134)
T ss_dssp             EEEECC-----CCC-EEECCSCEEEEEEESEEEEEETTTEEEEEETTCEEECCTTCCEEEEEECTT-CEEEEE
T ss_pred             EEEEecCCCCCCCC-EECCCCcEEEEEEeCEEEEEECCcEEEEecCCCEEEECCCCcEEeEeCCCC-eEEEEE
Confidence            33444568998886 66765 89999999999999999 999999999999999999999998874 688743

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=99.20  E-value=3.8e-11  Score=91.65  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             EEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          183 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       183 ~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +.+++||.. +  .||..+|.+|||+|++.+.++ |+.+.+++||++++++|.+|.+.|.++....|++|
T Consensus        35 ~~~~~pg~~-~--~hH~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~yv~~  101 (101)
T 1o5u_A           35 IWEKEVSEF-D--WYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF  101 (101)
T ss_dssp             EEEECSEEE-E--EECSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEC
T ss_pred             EEEeCCCcc-c--ccCCceEEEEEEeCEEEEEECCCCEEEECCCCEEEECCCCcEEEEeCCCeeEEEEEC
Confidence            677889874 2  347788999999999999999 99999999999999999999999999999998876

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.20  E-value=5e-11  Score=102.42  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             Eee-CCC--CCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          169 KLL-PQA--VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       169 ~l~-p~~--~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      .|+ |..  .+.++.+-++.+.||...|. |+|..||.||||+|++.++++ |+|..+++||++++++|.+|+++ ++++
T Consensus       119 elvGP~g~~~s~~l~lG~v~l~PG~~yP~-HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~r-t~de  196 (217)
T 4b29_A          119 ELAGPSGHFLTQSLRVTVGYWGPGLDYGW-HEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRFHPANAPHAMT-TLTD  196 (217)
T ss_dssp             EEEETTSSEECSSCEEEEEEECSSCEEEE-EECSSEEEEEEEEECEEEEETTSCCEEECTTCEEEECTTCCEEEE-CCSS
T ss_pred             EEECCCCCCCCCeEEEEEEEECCCCcCCC-CCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEEcCCCCceeEE-ECCc
Confidence            344 643  34678888999999999997 788899999999999999999 99999999999999999999998 6899


Q ss_pred             cEEEE
Q 025000          245 RTRYL  249 (259)
Q Consensus       245 ~~~fi  249 (259)
                      |+.-+
T Consensus       197 Pllal  201 (217)
T 4b29_A          197 PILTL  201 (217)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            99633

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.18  E-value=6.8e-11  Score=112.49  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=73.7

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC--C------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG--D------------------------  217 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~--g------------------------  217 (259)
                      ++.+.+.+..   ....+.+++++||+.++. |+|...|.+||++|+|++.+-  |                        
T Consensus        48 ~~~~~~~~~~l~~~gvs~~r~~i~pggl~~P-h~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q  126 (459)
T 2e9q_A           48 TEVWDQDNDEFQCAGVNMIRHTIRPKGLLLP-GFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQ  126 (459)
T ss_dssp             EEECCTTSHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEEC
T ss_pred             EEecCCCChhhccCceEEEEEEEcCCCEecc-eecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccc
Confidence            4445554422   257888999999999975 667899999999999999884  2                        


Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecC
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                      +.+.|++||++++|+|.+||++|+|+++|++|+..|.+
T Consensus       127 ~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~  164 (459)
T 2e9q_A          127 KIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTR  164 (459)
T ss_dssp             CCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESS
T ss_pred             eeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCC
Confidence            36799999999999999999999999999999998854

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=99.18  E-value=2.6e-11  Score=98.24  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=71.9

Q ss_pred             eccCCCCCCcccC----CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE--EEc
Q 025000          149 VGSTDKQPLLETP----GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW--YPV  222 (259)
Q Consensus       149 v~~~~di~~~~~~----g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~--~~v  222 (259)
                      +.+.+++++++..    ..++.++.|...+. ....+++++++||+.+|. |+|..+|.+|||+|+..+..++..  .++
T Consensus        11 ~i~~~~~~W~~~p~~~~~~Gv~~~~L~~~~~-~g~~~~~~~~~pG~~~p~-H~H~~~ee~~VL~G~~~~~~g~~~~~~~~   88 (145)
T 2o1q_A           11 YVQMDQVDWKPFPAAFSTGGIRWKLLHVSPE-MGSWTAIFDCPAGSSFAA-HVHVGPGEYFLTKGKMDVRGGKAAGGDTA   88 (145)
T ss_dssp             CCCGGGSCCEECCGGGEESCCEEEEEEEETT-TTEEEEEEEECTTEEECC-EEESSCEEEEEEEEEEEETTCGGGTSEEE
T ss_pred             EEccccCccEeCCcccCCCCcEEEEeeECCC-cccEEEEEEECCCCCCCc-cCCCCCEEEEEEEeEEEEcCCCEecceEe
Confidence            3445678888874    45667777753221 123578999999999997 677677779999999998766665  899


Q ss_pred             cCCcEEEeCCCCcee-EEeCCCccEEEE
Q 025000          223 QAGDVLWMAPFVPQW-YAALGKTRTRYL  249 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~-~~n~G~e~~~fi  249 (259)
                      ++||++++++|..|+ ..+  .++++++
T Consensus        89 ~~Gd~~~~p~g~~H~p~~~--~e~~~~l  114 (145)
T 2o1q_A           89 IAPGYGYESANARHDKTEF--PVASEFY  114 (145)
T ss_dssp             ESSEEEEECTTCEESCCEE--EEEEEEE
T ss_pred             CCCEEEEECcCCccCCeEC--CCCeEEE
Confidence            999999999999999 443  3444444

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.18  E-value=7.3e-11  Score=109.21  Aligned_cols=88  Identities=11%  Similarity=0.120  Sum_probs=74.6

Q ss_pred             cceEEEEecCCCC--CcEEEEEEEecCCCcCCCCCCCc-eEEEEEEECEEEEEEcC-----CcEEEEeCCcEEEeCCCCc
Q 025000           48 NTLGAYLITPAMG--SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTNAS-----GVSSKLMVDSYTYLPPNFA  119 (259)
Q Consensus        48 ~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h~~~~-Eef~yVl~G~l~v~v~~-----ge~~~L~~Gd~i~~p~~~~  119 (259)
                      +...+++.++..+  ..+.+++++++||+..+.|.|.. +|++||++|++++++ +     ++++.|++||+++||++.+
T Consensus       240 ~g~~~~~~~~~~~~~~~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i-~~~~g~~~~~~l~~GD~~~ip~~~~  318 (385)
T 1j58_A          240 GGKVYIADSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTV-FASDGHARTFNYQAGDVGYVPFAMG  318 (385)
T ss_dssp             SEEEEEESTTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEE-EEETTEEEEEEEESSCEEEECTTCB
T ss_pred             CceEEEeecccCCcccceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEE-EcCCCcEEEEEEcCCCEEEECCCCe
Confidence            3455666666554  37999999999999887786766 999999999999999 7     7899999999999999999


Q ss_pred             EEEEe--CCeEEEEEEEEe
Q 025000          120 HSLRA--EGSATLVVFERR  136 (259)
Q Consensus       120 H~~~N--~~~a~~l~v~~~  136 (259)
                      |+++|  +++++++++..+
T Consensus       319 H~~~n~~~~~~~~l~v~~~  337 (385)
T 1j58_A          319 HYVENIGDEPLVFLEIFKD  337 (385)
T ss_dssp             EEEEECSSSCEEEEEEESS
T ss_pred             EEEEECCCCCEEEEEEECC
Confidence            99999  568999888643

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=99.18  E-value=1e-10  Score=92.43  Aligned_cols=73  Identities=8%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ..+...+.++.||... .|.|..+|++|||+|++++++.+|+++.|++||+++||+|.+|+|+|.+++|-+++.
T Consensus        47 g~~~~g~w~~~pG~~~-~~~~~~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~  119 (123)
T 3bcw_A           47 GKVESGVWESTSGSFQ-SNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFV  119 (123)
T ss_dssp             TTEEEEEEEEEEEEEE-CCCTTEEEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCCCEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCCcee-eEcCCCcEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCeEEEEECCceeEEEEE
Confidence            4677788888898644 455556999999999999997467889999999999999999999997767665554

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.18  E-value=6.2e-11  Score=113.28  Aligned_cols=91  Identities=14%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             CCceEEEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--------------------
Q 025000          161 PGEVFQLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--------------------  217 (259)
Q Consensus       161 ~g~~~~~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--------------------  217 (259)
                      ++|.  +..+.+.+..   ....+.+++++||+.++. |+|.+.|.+||++|+|++.+-.                    
T Consensus        29 e~G~--~e~~~~~~~~l~~~gvs~~r~~l~Pggl~~P-h~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~  105 (476)
T 1fxz_A           29 EGGL--IETWNPNNKPFQCAGVALSRCTLNRNALRRP-SYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSS  105 (476)
T ss_dssp             TTEE--EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECCEEEEEECTTCCCC--------------
T ss_pred             CCce--EEeeCCCChhhccCceEEEEEEEcCCCEecc-eecCCceEEEEEecEEEEEEEcCCCcchhhcccccccccccc
Confidence            4443  4446665433   257888999999999975 6778999999999999988874                    


Q ss_pred             -------EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          218 -------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       218 -------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                             +.+.|++||++++|+|..||++|+|+++|++|+.=|.
T Consensus       106 ~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~  149 (476)
T 1fxz_A          106 RPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDT  149 (476)
T ss_dssp             ----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECT
T ss_pred             ccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecC
Confidence                   4789999999999999999999999999999988764

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.18  E-value=7.4e-11  Score=113.16  Aligned_cols=88  Identities=15%  Similarity=0.208  Sum_probs=74.4

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC---------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  216 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---------------------------  216 (259)
                      +..+.+.+..   .++++..++++||+.+.. |+|...+.+||++|+|++.+-                           
T Consensus        30 ~e~~~~~~~~l~~~gv~~~r~~i~pggl~~P-h~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~  108 (493)
T 2d5f_A           30 IETWNSQHPELQCAGVTVSKRTLNRNGLHLP-SYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQ  108 (493)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CS
T ss_pred             EEEeCCCChhhccCCEEEEEEEeCCCcEeCc-eecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccc
Confidence            4445554322   358899999999999975 677889999999999999877                           


Q ss_pred             ---CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecC
Q 025000          217 ---DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       217 ---g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                         .+.+.|++||++++|+|.+||+.|+|+++|++||.=|.+
T Consensus       109 d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~  150 (493)
T 2d5f_A          109 DSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTS  150 (493)
T ss_dssp             EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTT
T ss_pred             cccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCc
Confidence               157899999999999999999999999999999987754

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=99.17  E-value=6e-11  Score=90.53  Aligned_cols=64  Identities=8%  Similarity=0.075  Sum_probs=53.3

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      ..++.||... .| |..+|++|||+|++++++ + |+++.|++||+++||+|.+|+++|.++++.+++
T Consensus        35 ~~~~~pg~~~-~h-H~~~E~~~Vl~G~~~~~i-~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~yv   99 (101)
T 1o5u_A           35 IWEKEVSEFD-WY-YDTNETCYILEGKVEVTT-EDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYN   99 (101)
T ss_dssp             EEEECSEEEE-EE-CSSCEEEEEEEEEEEEEE-TTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred             EEEeCCCccc-cc-CCceEEEEEEeCEEEEEE-CCCCEEEECCCCEEEECCCCcEEEEeCCCeeEEEE
Confidence            4456676432 33 678999999999999999 8 999999999999999999999999776666655

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.16  E-value=7e-11  Score=113.51  Aligned_cols=90  Identities=12%  Similarity=0.134  Sum_probs=76.3

Q ss_pred             EEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-------------------------
Q 025000          166 QLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-------------------------  217 (259)
Q Consensus       166 ~~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g-------------------------  217 (259)
                      .+..+.+.+..   ..+++.+++++||+.+.. |+|.+.+.+||++|+|++.+-.                         
T Consensus        32 ~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lP-h~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~  110 (510)
T 3c3v_A           32 YIETWNPNNQEFECAGVALSRLVLRRNALRRP-FYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRR  110 (510)
T ss_dssp             EEEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC------------
T ss_pred             eEEEeCCCCcccccCcEEEEEEEECCCCCccc-eecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccc
Confidence            34556665432   468899999999999875 6778889999999999998874                         


Q ss_pred             ---------------EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          218 ---------------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       218 ---------------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                                     +.+.|++||+|++|+|++||++|.|+++|++|+..|.+-
T Consensus       111 ~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n  164 (510)
T 3c3v_A          111 LQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN  164 (510)
T ss_dssp             --------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred             ccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence                           247999999999999999999999999999999998763

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.15  E-value=9.6e-11  Score=109.57  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=69.5

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcE------EEeCCCCceeEEeCC-CccE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDV------LWMAPFVPQWYAALG-KTRT  246 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~------i~~~~~~~H~~~n~G-~e~~  246 (259)
                      ++.+.+++++||+..+. |+|..+|.+|||+|+|++.+    +...+.|++||+      +++|+|..|++.|+| +++|
T Consensus        51 ~~s~~~~~l~pgg~~~p-h~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l  129 (397)
T 2phl_A           51 DYRLVEFRSKPETLLLP-QQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDL  129 (397)
T ss_dssp             TCEEEEEEECSSEEEEE-EEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCE
T ss_pred             cEEEEEEEECCCcCccC-EecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCe
Confidence            48999999999999875 66788899999999999998    678999999999      999999999999999 8999


Q ss_pred             EEEEEeec
Q 025000          247 RYLLYKDV  254 (259)
Q Consensus       247 ~fi~~k~~  254 (259)
                      ++|++.|.
T Consensus       130 ~~i~~~~~  137 (397)
T 2phl_A          130 RIIQLAMP  137 (397)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeecC
Confidence            99988663

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=99.15  E-value=1.5e-09  Score=96.13  Aligned_cols=186  Identities=15%  Similarity=0.169  Sum_probs=120.8

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcC-C--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccC--C----
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTNAS-G--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLE--N----  142 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~--g----  142 (259)
                      |+.+...|+.+.+|++|+++|.+.+.+.+ |  +...|++||.+.+|+|++|+-...+.+..|+++++=.+..  +    
T Consensus        40 pN~R~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~et~gLviE~~R~~~~~D~l~wy  119 (286)
T 2qnk_A           40 PNTRKDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYY  119 (286)
T ss_dssp             CBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEECCCTTCCEEEEEE
T ss_pred             CCcCccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccCCeEEEEEeecCCCCCccceEEE
Confidence            33346677778999999999999999833 3  2689999999999999999987766778888875532211  0    


Q ss_pred             ---CCc--ceeeccCCCC------------------------------CCcccCCce----EEEE-Eee-------CC--
Q 025000          143 ---HIT--EQIVGSTDKQ------------------------------PLLETPGEV----FQLR-KLL-------PQ--  173 (259)
Q Consensus       143 ---~~p--~~~v~~~~di------------------------------~~~~~~g~~----~~~~-~l~-------p~--  173 (259)
                         ...  ........|+                              |+-+.+...    +-++ ||.       ..  
T Consensus       120 c~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~~~rtc~p~~~~~~~~~p~~~~~~~~~~pf~Lk~Wl~~h~~ei~s~~~  199 (286)
T 2qnk_A          120 VGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRSIMEPMSLDAWLDSHHRELQAGTP  199 (286)
T ss_dssp             STTSSSEEEEEEECCSSHHHHHHHHHHHHHTSHHHHHSCCCGGGSCSSCSSCCCCCCCCCCEEHHHHHHHTHHHHHTTCC
T ss_pred             cCCCCCEEEEEEEEEechHHhhHHHHHHHhcCcccccCCCChhhcccCCCCCCccccccCCcCHHHHHHhhhHHHhcCCc
Confidence               000  0001111111                              111111111    1111 221       11  


Q ss_pred             -CCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          174 -AVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       174 -~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                       ++. ..+-+.++-+-+|.+.... .-. +--+++|||+-.+++||..+.+++||.+.++++..|.+....+.-+-+|.-
T Consensus       200 ~sLFg~~~eteV~l~G~Ges~~~~-~~~-d~wiWqLEGss~Vt~~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L~I~~  277 (286)
T 2qnk_A          200 LSLFGDTYETQVIAYGQGSSEGLR-QNV-DVWLWQLEGSSVVTMGGRRLSLAPDDSLLVLAGTSYAWERTQGSVALSVTQ  277 (286)
T ss_dssp             EESSCTTSSEEEEEECSEEEEECC-CSS-CEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEE
T ss_pred             cccccCCCceEEEEEcCCcccccc-CcC-cEEEEEEcCceEEEECCeEEeccCCCEEEecCCCeEEEEecCCeEEEEEEE
Confidence             121 2444566668888876542 222 344899999999999999999999999999999999999876666666666


Q ss_pred             eecCCCCC
Q 025000          252 KDVNRNPL  259 (259)
Q Consensus       252 k~~nr~~~  259 (259)
                      +.-++.|+
T Consensus       278 ~p~~~~~~  285 (286)
T 2qnk_A          278 DPACKKPL  285 (286)
T ss_dssp             CGGGCCSC
T ss_pred             CccccCCC
Confidence            65555543

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.15  E-value=2.7e-10  Score=84.89  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=53.6

Q ss_pred             cCCCCCCCc-eEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           75 RSALPPHDV-ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        75 ~~~~h~~~~-Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ..+.|.|.. .|++||++|++++.+ +++++.|++||++++|+|.+|+++|.++++++++.
T Consensus        41 ~~~~H~H~~~~e~~~v~~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~i~  100 (102)
T 3d82_A           41 EFVWHEHADTDEVFIVMEGTLQIAF-RDQNITLQAGEMYVIPKGVEHKPMAKEECKIMIIE  100 (102)
T ss_dssp             ECCCBCCTTCCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTCCBEEEEEEEEEEEEEE
T ss_pred             CCCceeCCCCcEEEEEEeCEEEEEE-CCEEEEEcCCCEEEECCCCeEeeEcCCCCEEEEEE
Confidence            456777776 999999999999999 99999999999999999999999997788888875

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=99.14  E-value=1e-08  Score=90.87  Aligned_cols=172  Identities=15%  Similarity=0.136  Sum_probs=121.8

Q ss_pred             EEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEE-e-C--------CcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           63 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKL-M-V--------DSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        63 f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L-~-~--------Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      ....+..|++|.+......+.|-.++.|.|.++|++ +|+++.+ . .        .|++|+|.|..-++.+.++++|.+
T Consensus        29 ~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~-~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v  107 (270)
T 2qjv_A           29 VGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA-ADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAV  107 (270)
T ss_dssp             CEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE-TTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEE
T ss_pred             eEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE-CCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEE
Confidence            455678889998776666778889999999999999 9999977 3 2        499999999999999877899999


Q ss_pred             EEEeccccCCCCcceeeccCCCCCCcccC-C-ceEEEEEeeCCCCCcceEEEEEEecCCccc---Ccceeecc-------
Q 025000          133 FERRYASLENHITEQIVGSTDKQPLLETP-G-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFL---NVKEVHYN-------  200 (259)
Q Consensus       133 v~~~y~p~~g~~p~~~v~~~~di~~~~~~-g-~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~---~~~~~H~~-------  200 (259)
                      ...+   .++.-|..++. .+|++..... | -...++.+++.+...+..+-..+|.||+.-   |. |+|..       
T Consensus       108 ~sAp---~~~~~p~r~i~-~~d~~~~~rG~g~n~R~V~~i~~~~~~a~~LlvgEv~tpgG~WSSyPp-HkHd~~~~~~e~  182 (270)
T 2qjv_A          108 CSAP---GFGELPVRLIS-PQEVGVEHRGXGRNQRLVHNILPDSQLADSLLVVEVYTNAGATSSWPA-HXHDTAVEGQET  182 (270)
T ss_dssp             EEEE---CCSCCCCEEEC-GGGSEEEEESSGGGCEEEEEEECTTSCCSSCEEEEEEECTTCEESCSC-EECEEEETTTEE
T ss_pred             Eeee---cCCcCCcEEEC-HHHCCeEeccCccchhhhhhhcCCCCCcceEEEEEEEcCCCccccCCC-cccccccCcccc
Confidence            8765   34333444443 4566555553 2 222454555444434433334447788764   64 67764       


Q ss_pred             --ceEEEE-EE---ceEEEEe------CCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          201 --QHGLLL-LE---GQGIYRL------GDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       201 --eh~~~i-l~---G~g~~~~------~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                        ||+||. +.   |-|.-++      .++.+.|+-||++.+|+|- |...+.
T Consensus       183 ~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-Hp~~a~  234 (270)
T 2qjv_A          183 YLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-HPVATI  234 (270)
T ss_dssp             ECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-CCEEEC
T ss_pred             cceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-CCCcCC
Confidence              288866 43   5666655      5789999999999999998 985544

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.13  E-value=1.5e-10  Score=98.40  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcC-----Cc--EEEEeCCcEEEeCCCCcEEEEe--CCeEE
Q 025000           60 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNAS-----GV--SSKLMVDSYTYLPPNFAHSLRA--EGSAT  129 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~-----ge--~~~L~~Gd~i~~p~~~~H~~~N--~~~a~  129 (259)
                      +..+.+.+++++||+..+.|.|. .+|++||++|++++.+.+     ++  ++.|++||.++||+|..|.++|  +++++
T Consensus        69 ~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~  148 (201)
T 1fi2_A           69 TLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             TSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEE
T ss_pred             cCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEE
Confidence            35789999999999988888666 589999999999998822     56  8999999999999999999999  55788


Q ss_pred             EEEEE
Q 025000          130 LVVFE  134 (259)
Q Consensus       130 ~l~v~  134 (259)
                      ++++.
T Consensus       149 ~l~v~  153 (201)
T 1fi2_A          149 MVVSF  153 (201)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88874

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.13  E-value=2.5e-10  Score=88.22  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=54.2

Q ss_pred             cCCcccCcc--eeeccceEEEEEEceEEEEeCCEE--EEccCCcEEEeCCCCceeEEeCCCc-cEEEEE
Q 025000          187 QPGDFLNVK--EVHYNQHGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVPQWYAALGKT-RTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~--~~H~~eh~~~il~G~g~~~~~g~~--~~v~~GD~i~~~~~~~H~~~n~G~e-~~~fi~  250 (259)
                      .+|..++..  ++|..+|.+|||+|++.+.++|+.  +.+++||.++++++++|.+.|+|++ ++.+|+
T Consensus        38 ~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~  106 (112)
T 2opk_A           38 SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLA  106 (112)
T ss_dssp             ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEE
T ss_pred             eCCccCCCCccccCCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEE
Confidence            456555442  567777999999999999999999  9999999999999999999999986 666554

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.11  E-value=5.7e-11  Score=89.97  Aligned_cols=74  Identities=8%  Similarity=0.067  Sum_probs=61.7

Q ss_pred             CcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCC---cEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASG---VSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE  134 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~  134 (259)
                      ..+.+.+++++||++.+.|.|. .+++++|++|+++++. ++   ++..|++||++|+|+|..|++.|  +.++.|+-|.
T Consensus        15 ~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~-~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeVE   93 (98)
T 3lag_A           15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA-PDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEIE   93 (98)
T ss_dssp             SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC-TTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe-CCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEEE
Confidence            4688899999999999999654 5678888999999998 55   34579999999999999999999  6688888775


Q ss_pred             E
Q 025000          135 R  135 (259)
Q Consensus       135 ~  135 (259)
                      -
T Consensus        94 ~   94 (98)
T 3lag_A           94 L   94 (98)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=99.10  E-value=6.5e-09  Score=90.73  Aligned_cols=174  Identities=13%  Similarity=0.097  Sum_probs=117.0

Q ss_pred             cCCCCCcceEEE-EecCCCCCcEEEEEEEecCCCcCCCC--CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCC
Q 025000           42 PLPEWTNTLGAY-LITPAMGSHFVMYLANMQENARSALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF  118 (259)
Q Consensus        42 ~lp~~~~~~~~~-l~sp~~g~~f~~~~~~l~Pg~~~~~h--~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~  118 (259)
                      .+|+-.....+. |.-+..|+  +-.++.++|+-..+..  +.+.|  +|||+|++.  + ||.  .|.++++.++|+|+
T Consensus        71 ~~p~~~~~gs~RlLs~~d~Ga--STl~V~fpp~~~~P~Gi~~ad~E--~fVL~G~i~--~-G~~--~l~~h~Y~f~PaGV  141 (303)
T 2qdr_A           71 GMPDNIAPGSRRLLTWHDSGA--STSRVVLPPKFEAPSGIFTADLE--IFVIKGAIQ--L-GEW--QLNKHSYSFIPAGV  141 (303)
T ss_dssp             TSCTTSCCEEEEEEEECTTSC--EEEEEEECTTCEECCBEESSCEE--EEEEESEEE--E-TTE--EECTTEEEEECTTC
T ss_pred             CCCCCcCccceeecccCCCCc--ceEEEEecCCCCCCCcccccceE--EEEEEeEEE--e-CCE--EecCCceEEecCCC
Confidence            344433333344 44444454  4467888998776554  34444  899999887  6 554  69999999999999


Q ss_pred             cEEE-Ee--CCeEEEEEEEEe-----ccccCCCCccee------eccCCCCCCcccC--C-ceEEEEEeeCCCCCcceEE
Q 025000          119 AHSL-RA--EGSATLVVFERR-----YASLENHITEQI------VGSTDKQPLLETP--G-EVFQLRKLLPQAVPFDFNI  181 (259)
Q Consensus       119 ~H~~-~N--~~~a~~l~v~~~-----y~p~~g~~p~~~------v~~~~di~~~~~~--g-~~~~~~~l~p~~~~~~~~~  181 (259)
                      .--. +-  .+++++||+..=     |...+...|.+-      +-+-+.+++...+  + ..+.+++|..+..  ....
T Consensus       142 ~~~~~kv~~~~g~~iL~fe~g~~pl~y~~a~~d~P~Ar~~d~I~v~Ds~~L~W~~t~~p~f~~~~~K~Lr~D~~--G~~T  219 (303)
T 2qdr_A          142 RIGSWKVLGGEEAEILWMENGSVPLEYKYAQEDHPDARLSDFIPALDSKLLPWGKADTVQFVQANKKWLRKDIN--GGGV  219 (303)
T ss_dssp             CBCCEEEETTSCEEEEEEECSSSCCCEECCSSCCTTCCGGGCEEEEEGGGSCCEECSSSTTCSEEEEEEEECTT--SCEE
T ss_pred             ccCceeecCCCCcEEEEEecCCccccccccccCCcchhhcccceecccccCCcccCCCCCccHHHHHHhhcCCC--CCeE
Confidence            7753 34  779999999221     122222223322      3334445565543  3 3445666654433  5557


Q ss_pred             EEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCcee
Q 025000          182 HIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       182 ~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~  237 (259)
                      +.+.+.||.-....-+|..-|+.|+|+|..           .+|++.|-+|+++|+
T Consensus       220 rLlr~~Pg~dt~~v~iHdy~EEvY~LeG~~-----------d~G~Y~~RPpg~~HG  264 (303)
T 2qdr_A          220 WLLAILPHFDNKYQMIQPYNEEGYCLTGYC-----------DVGDYRIVKDHYWYC  264 (303)
T ss_dssp             EEEEECSSEECCSEEEECSCEEEEEEEEEE-----------EETTEEEETTEEEEE
T ss_pred             EEEEECCCCCCCCceeeccceeEEEEeeec-----------cCceeeEcCCCCccC
Confidence            788999998888888998889999999976           669999999999999

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=99.09  E-value=4.7e-10  Score=92.38  Aligned_cols=99  Identities=10%  Similarity=0.067  Sum_probs=76.7

Q ss_pred             eccCCCCCCcccC--CceEEEEEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCC
Q 025000          149 VGSTDKQPLLETP--GEVFQLRKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAG  225 (259)
Q Consensus       149 v~~~~di~~~~~~--g~~~~~~~l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~G  225 (259)
                      +.+.+++++++..  ++++.++.|. ..+.  ...++++.++||+.+|. |+|...+.+|||+|+..|..+|  ..+++|
T Consensus        11 ~v~~~~~~W~~~~~~~~Gv~~~~L~~d~~~--g~~v~lvr~~pG~~~p~-H~H~g~ee~~VL~G~~~~~e~~--~~~~~G   85 (159)
T 3ebr_A           11 CLDGNDTPWMPFAPYSNDVMVKYFKIDPVR--GETITLLKAPAGMEMPR-HHHTGTVIVYTVQGSWRYKEHD--WVAHAG   85 (159)
T ss_dssp             CCCGGGSCCEECTTTCSSSEEEEEEEETTT--TEEEEEEEECSSCBCCC-EEESSCEEEEEEESCEEETTSS--CCBCTT
T ss_pred             EEcCCcCCcEeCCCCCCCEEEEEeeEcCCC--CeEEEEEEECCCCCccc-ccCCCCEEEEEEEeEEEEeCCC--eEECCC
Confidence            3456778888842  3556677664 2222  36788999999999997 6776678899999999875443  489999


Q ss_pred             cEEEeCCCCceeEEeC--CCccEEEEEEe
Q 025000          226 DVLWMAPFVPQWYAAL--GKTRTRYLLYK  252 (259)
Q Consensus       226 D~i~~~~~~~H~~~n~--G~e~~~fi~~k  252 (259)
                      |+++.++|..|+..+.  +++++..+.-|
T Consensus        86 d~~~~P~g~~H~~~~~~~~~e~~~~~~~~  114 (159)
T 3ebr_A           86 SVVYETASTRHTPQSAYAEGPDIITFNIV  114 (159)
T ss_dssp             CEEEECSSEEECEEESSSSSSCEEEEEEE
T ss_pred             eEEEECCCCcceeEeCCCCCCCEEEEEEe
Confidence            9999999999999999  88999877644

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.08  E-value=7.6e-10  Score=90.84  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             EEEecCCCCCcEEEEEEEecCCCcCCCCCC-CceEEEEEEE--CEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeE
Q 025000           52 AYLITPAMGSHFVMYLANMQENARSALPPH-DVERFIFVVQ--GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSA  128 (259)
Q Consensus        52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~--G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a  128 (259)
                      +.+..+..+-.+..+++++  ++....|.| ..+|++|||+  |++++++ +|+++.|++||++++|+|+.|++++  ++
T Consensus        36 rR~l~~~~~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i-dge~~~l~~GD~v~IPpg~~H~i~g--~l  110 (157)
T 4h7l_A           36 QRAFGHDAGTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL-NGQSYPLTKLLAISIPPLVRHRIVG--EA  110 (157)
T ss_dssp             EEESCGGGCCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE-TTEEEECCTTEEEEECTTCCEEEES--CE
T ss_pred             eEEeEcCCCCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE-CCEEEEeCCCCEEEECCCCeEeeEC--CE
Confidence            4445444444455555554  445566755 5789999999  9999999 9999999999999999999999985  79


Q ss_pred             EEEEEEEe
Q 025000          129 TLVVFERR  136 (259)
Q Consensus       129 ~~l~v~~~  136 (259)
                      ++|++..+
T Consensus       111 ~~L~I~~P  118 (157)
T 4h7l_A          111 TIINIVSP  118 (157)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEECC
Confidence            99998654

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.07  E-value=2.1e-10  Score=87.02  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             EEEecCCcccCcceeecc-ceEEEEEEceEEEEeCC-EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          183 IMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGD-SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       183 ~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~g-~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      .+++.||. .+. |.|.. +|.+|||+|++.+.++| +.+.+++||++++++|++|++.|.  +++++|++.
T Consensus        32 ~~~~~~g~-~~~-H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i~   99 (107)
T 2i45_A           32 HLVKLLGD-YGW-HTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSE--NGCSLVLIE   99 (107)
T ss_dssp             EEEEEEEE-CCC-BCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEEECTTCCEEEEEE--EEEEEEEEE
T ss_pred             EEEECCCC-Ccc-eeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEEECCCCcEeeEeC--CCeEEEEEE
Confidence            45667886 454 67776 89999999999999999 999999999999999999999995  567777653

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.01  E-value=1.8e-09  Score=80.31  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             EEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          180 NIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       180 ~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      .+++..+.  +..+. |.|.. .|.+||++|++.+.++|+.+.+++||++++++|.+|++.|.+  ++++|+..
T Consensus        32 ~~~~~~~~--~~~~~-H~H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~i~  100 (102)
T 3d82_A           32 QFKLVKVE--GEFVW-HEHADTDEVFIVMEGTLQIAFRDQNITLQAGEMYVIPKGVEHKPMAKE--ECKIMIIE  100 (102)
T ss_dssp             EEEEEEEE--EECCC-BCCTTCCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCBEEEEEE--EEEEEEEE
T ss_pred             EEEEEEEC--CCCCc-eeCCCCcEEEEEEeCEEEEEECCEEEEEcCCCEEEECCCCeEeeEcCC--CCEEEEEE
Confidence            34444443  45665 56766 899999999999999999999999999999999999999984  66776653

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.00  E-value=1.1e-09  Score=104.07  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe--CC------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD------------------------  217 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g------------------------  217 (259)
                      ++.+++.+..   ...++.+++++||+.++. |.|...+.+||++|+|++.+  .|                        
T Consensus        35 ~e~~d~~~~~l~~~gvs~~R~~i~P~gl~~P-h~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~~  113 (465)
T 3qac_A           35 TEVWDSNEQEFRCAGVSVIRRTIEPHGLLLP-SFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQG  113 (465)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEEECTTCCCCC-------------------
T ss_pred             EEEECCCChhhcccceEEEEEEEcCCcCccc-EEcCCCEEEEEEECcEEEEEecCCCCceeecchhcccccccccccccc
Confidence            4556665422   368888999999999986 56688899999999998874  21                        


Q ss_pred             ----------------EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecC
Q 025000          218 ----------------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       218 ----------------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                                      +.+.+++||++++|+|..||++|+|++||++|+.=|.+
T Consensus       114 ~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~  167 (465)
T 3qac_A          114 SRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTA  167 (465)
T ss_dssp             -----------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTT
T ss_pred             ccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCC
Confidence                            25689999999999999999999999999999998875

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.99  E-value=1.8e-09  Score=99.30  Aligned_cols=83  Identities=10%  Similarity=-0.009  Sum_probs=61.9

Q ss_pred             EEEee-CCCCCcceEEEEEEecCCcccCc--ceeec-cceEEEEEEceEEEEeCC-----EEEEccCCcEEEeCCCCcee
Q 025000          167 LRKLL-PQAVPFDFNIHIMDFQPGDFLNV--KEVHY-NQHGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       167 ~~~l~-p~~~~~~~~~~~~t~~PG~~~~~--~~~H~-~eh~~~il~G~g~~~~~g-----~~~~v~~GD~i~~~~~~~H~  237 (259)
                      .+.++ +...+..+.+. .++.|++..+.  .|.|. .+|.+|||+|++.+.++|     +++.+++||+++++++.+|+
T Consensus        35 ~~~l~~~~~~~~~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~  113 (350)
T 1juh_A           35 YRFYVTGPSSGYAFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHT  113 (350)
T ss_dssp             EEEEECHHHHTTSCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEE
T ss_pred             EEEEecCCCCCCcEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEE
Confidence            44444 43333333333 44556655442  25554 779999999999999999     99999999999999999999


Q ss_pred             EEeCCCccEEEEEE
Q 025000          238 YAALGKTRTRYLLY  251 (259)
Q Consensus       238 ~~n~G~e~~~fi~~  251 (259)
                      +.|.|+++ ++|+.
T Consensus       114 ~~n~~~~~-~~l~v  126 (350)
T 1juh_A          114 FQIQDPDT-EMTGV  126 (350)
T ss_dssp             EEECSTTE-EEEEE
T ss_pred             EEeCCCCC-EEEEE
Confidence            99999887 77764

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.98  E-value=2.7e-09  Score=88.41  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             ceeeccCCCCCCcccCC--ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEcc
Q 025000          146 EQIVGSTDKQPLLETPG--EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQ  223 (259)
Q Consensus       146 ~~~v~~~~di~~~~~~g--~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~  223 (259)
                      ..+..+.+++++++..+  +++.++.|.-.. .....++++.++||+.+|. |.|...+..|||+|...+. ++..+.++
T Consensus         9 ~~v~v~~~~~~W~~~~~~~~GV~~~~L~~~~-~~g~~v~lvr~~pG~~~p~-H~H~g~ee~~VL~G~f~~~-~~~~~~~~   85 (165)
T 3cjx_A            9 KLLTVDTTAHPFLKALGGHEGTDIFPLFMDP-YNGLMVMRASFAPGLTLPL-HFHTGTVHMYTISGCWYYT-EYPGQKQT   85 (165)
T ss_dssp             SCEEEETTSSCCBCSGGGCTTEEEEEEEEET-TTTEEEEEEEECTTCBCCE-EEESSCEEEEEEESEEEET-TCTTSCEE
T ss_pred             ceEEEccccCCcEECCCCCCCEEEEEeEeCC-CCCcEEEEEEECCCCcCCc-ccCCCCEEEEEEEEEEEEC-CCceEEEC
Confidence            34566788899988742  456677664221 1235688999999999996 7888889999999998873 22257889


Q ss_pred             CCcEEEeCCCCceeEEeCC--CccEEEEEEee
Q 025000          224 AGDVLWMAPFVPQWYAALG--KTRTRYLLYKD  253 (259)
Q Consensus       224 ~GD~i~~~~~~~H~~~n~G--~e~~~fi~~k~  253 (259)
                      +||+++.++|..|+..+..  ++++..|+-|+
T Consensus        86 aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           86 AGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             TTEEEEECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             CCeEEEeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            9999999999999999975  34775555444

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.96  E-value=1.5e-09  Score=85.64  Aligned_cols=72  Identities=14%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+.+.+.+++||... . |.|..+|.+|||+|++.+++ ||+.+.+++||++++++|.+|.++|.++..-.|++|
T Consensus        48 ~~~~g~w~~~pG~~~-~-~~~~~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~~  120 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-S-NTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVT  120 (123)
T ss_dssp             TEEEEEEEEEEEEEE-C-CCTTEEEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCCCEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCcee-e-EcCCCcEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCeEEEEECCceeEEEEEE
Confidence            456668888899865 2 34433799999999999999 999999999999999999999999998877677665

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.85  E-value=2.9e-09  Score=86.04  Aligned_cols=84  Identities=14%  Similarity=0.106  Sum_probs=65.1

Q ss_pred             CcceEEEEecC-CCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE--EEEeCCcEEEeCCCCcEE-E
Q 025000           47 TNTLGAYLITP-AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFAHS-L  122 (259)
Q Consensus        47 ~~~~~~~l~sp-~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~--~~L~~Gd~i~~p~~~~H~-~  122 (259)
                      .+....+|... ..|.  .+.+++++||+..+.|.|.++|.+|||+|+++... ++..  +++++||+++.|+|..|+ .
T Consensus        29 ~Gv~~~~L~~~~~~g~--~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~~-g~~~~~~~~~~Gd~~~~p~g~~H~p~  105 (145)
T 2o1q_A           29 GGIRWKLLHVSPEMGS--WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRG-GKAAGGDTAIAPGYGYESANARHDKT  105 (145)
T ss_dssp             SCCEEEEEEEETTTTE--EEEEEEECTTEEECCEEESSCEEEEEEEEEEEETT-CGGGTSEEEESSEEEEECTTCEESCC
T ss_pred             CCcEEEEeeECCCccc--EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEcC-CCEecceEeCCCEEEEECcCCccCCe
Confidence            45666777543 3342  35678999999999997766777999999999775 6666  899999999999999999 6


Q ss_pred             EeCCeEEEEEE
Q 025000          123 RAEGSATLVVF  133 (259)
Q Consensus       123 ~N~~~a~~l~v  133 (259)
                      .+.+.+.++.+
T Consensus       106 ~~~e~~~~l~~  116 (145)
T 2o1q_A          106 EFPVASEFYMS  116 (145)
T ss_dssp             EEEEEEEEEEE
T ss_pred             ECCCCeEEEEE
Confidence            55566766655

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.83  E-value=8.9e-09  Score=98.56  Aligned_cols=89  Identities=11%  Similarity=0.193  Sum_probs=72.9

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe---C-CE---------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---G-DS---------------------  218 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~-g~---------------------  218 (259)
                      +..+.+....   ....+.+++++||+.++. |+|...+.+||++|+|.+.+   + .+                     
T Consensus        31 ~e~~~~~~~~L~~~gvs~~R~~i~pggl~lP-h~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~q  109 (496)
T 3ksc_A           31 IETWNPNNKQFRCAGVALSRATLQRNALRRP-YYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQ  109 (496)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCC
T ss_pred             EEeccccchhhccCCceEEEEEecCCCEeCc-eEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchh
Confidence            3444544322   368889999999999876 56688899999999998887   3 22                     


Q ss_pred             -EEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          219 -WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       219 -~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                       .+.+++||++.+|+|..||+.|.|+++++.|+.=|+|-
T Consensus       110 k~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n  148 (496)
T 3ksc_A          110 KVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRS  148 (496)
T ss_dssp             CEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTC
T ss_pred             eeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCc
Confidence             45999999999999999999999999999999887763

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.83  E-value=1.1e-08  Score=84.72  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             ceEEECCCCceeccCCC-CCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEe
Q 025000           29 DHALITPESHVLSPLPE-WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLM  107 (259)
Q Consensus        29 ~~avi~pe~~v~~~lp~-~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~  107 (259)
                      .+..+..+...+...+. ..+.....|... .+....+.++.++||+..+.|.|.+.|++|||+|+.+..  ++..+.++
T Consensus         9 ~~v~v~~~~~~W~~~~~~~~GV~~~~L~~~-~~~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~--~~~~~~~~   85 (165)
T 3cjx_A            9 KLLTVDTTAHPFLKALGGHEGTDIFPLFMD-PYNGLMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT--EYPGQKQT   85 (165)
T ss_dssp             SCEEEETTSSCCBCSGGGCTTEEEEEEEEE-TTTTEEEEEEEECTTCBCCEEEESSCEEEEEEESEEEET--TCTTSCEE
T ss_pred             ceEEEccccCCcEECCCCCCCEEEEEeEeC-CCCCcEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC--CCceEEEC
Confidence            35556666555544442 445655655322 223455779999999999999888899999999999852  33257899


Q ss_pred             CCcEEEeCCCCcEEEEeCC----eEEEEEEEE
Q 025000          108 VDSYTYLPPNFAHSLRAEG----SATLVVFER  135 (259)
Q Consensus       108 ~Gd~i~~p~~~~H~~~N~~----~a~~l~v~~  135 (259)
                      +||+++.|+|..|...+.+    .|.++|+.+
T Consensus        86 aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           86 AGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             TTEEEEECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             CCeEEEeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            9999999999999998733    787777654

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.78  E-value=7.8e-09  Score=94.09  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEceEEE----EeCCEEEEccC-C---cEEEeCCCCceeEEeCCCccEEEEE
Q 025000          179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY----RLGDSWYPVQA-G---DVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~----~~~g~~~~v~~-G---D~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ..+...+.+||...+.|-|+...+.++|++|++.+    ..+|+++.+.. |   |.+|||+|..|+|+|+|++++++++
T Consensus       272 ~q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~  351 (369)
T 3st7_A          272 GQVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIM  351 (369)
T ss_dssp             CEEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEE
T ss_pred             ceEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEE
Confidence            34457788999999998888888999999999999    78999999999 9   9999999999999999999999988


Q ss_pred             Eee
Q 025000          251 YKD  253 (259)
Q Consensus       251 ~k~  253 (259)
                      .-+
T Consensus       352 ~~~  354 (369)
T 3st7_A          352 WVN  354 (369)
T ss_dssp             EES
T ss_pred             ecC
Confidence            643

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.77  E-value=3e-08  Score=83.83  Aligned_cols=69  Identities=17%  Similarity=0.417  Sum_probs=57.1

Q ss_pred             EEEEEEecCCc----------ccCcceeeccceEEEEEEceEEEEeCCE---EE--EccCCcEEEeCCCCceeEEeCCCc
Q 025000          180 NIHIMDFQPGD----------FLNVKEVHYNQHGLLLLEGQGIYRLGDS---WY--PVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       180 ~~~~~t~~PG~----------~~~~~~~H~~eh~~~il~G~g~~~~~g~---~~--~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      ...++++.|+.          ..+ .|+|..+|.+|||+|+|.+.++|+   |+  .+++||+|++|+|.+|++.+..+.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~-~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFE-EHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHS-CEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceeEEEECCCcCcchhhhhccCCc-ceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC
Confidence            44567777875          124 478888999999999999999974   55  999999999999999999998777


Q ss_pred             cEEEE
Q 025000          245 RTRYL  249 (259)
Q Consensus       245 ~~~fi  249 (259)
                      .++-|
T Consensus       154 ~~~ai  158 (191)
T 1vr3_A          154 YVKAM  158 (191)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            77665

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.77  E-value=4.5e-08  Score=78.46  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=60.6

Q ss_pred             eCCCCCcc-eEEEEEEecCCcccCc----ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC-c
Q 025000          171 LPQAVPFD-FNIHIMDFQPGDFLNV----KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-T  244 (259)
Q Consensus       171 ~p~~~~~~-~~~~~~t~~PG~~~~~----~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e  244 (259)
                      +|.+.-.+ .........|+-...+    .|.|..-+.+||++|+|.+.+||+.+++++||+++++||++|++.+.++ +
T Consensus         4 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~p~~h~~~~i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~   83 (164)
T 2arc_A            4 LPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAR   83 (164)
T ss_dssp             STTCCCSSSCEEEEEEEETTSTTCSCEEETTCCSSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEECTTSS
T ss_pred             cccchhhhhhhhcceeeccCCchhhhhccccCCCceEEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCCEEEEeCCCCC
Confidence            35444333 3456666677655322    2456666889999999999999999999999999999999999999874 6


Q ss_pred             cEEEEE
Q 025000          245 RTRYLL  250 (259)
Q Consensus       245 ~~~fi~  250 (259)
                      ++++++
T Consensus        84 ~~~~~~   89 (164)
T 2arc_A           84 EWYHQW   89 (164)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            666654

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.75  E-value=3.1e-08  Score=93.18  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=67.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLY  251 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~  251 (259)
                      ..+.+.+++++||+.++.| |...++.+||++|+|++.+    +-+...|++||++++|+|..||+.|+|+ ++|.++++
T Consensus        42 ~~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l  120 (418)
T 3s7i_A           42 QNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKI  120 (418)
T ss_dssp             TTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEE
T ss_pred             cceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEe
Confidence            4678889999999999864 4566788999999999987    5678999999999999999999999875 68999998


Q ss_pred             eec
Q 025000          252 KDV  254 (259)
Q Consensus       252 k~~  254 (259)
                      .|.
T Consensus       121 ~~~  123 (418)
T 3s7i_A          121 SMP  123 (418)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            765

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.75  E-value=3.6e-08  Score=93.68  Aligned_cols=89  Identities=12%  Similarity=0.102  Sum_probs=72.8

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--------------------------  217 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--------------------------  217 (259)
                      ++.+.+.+..   ..+.+.+++++||+.++. |+|...+.+||++|+|.+-+=.                          
T Consensus        28 ~e~w~~~~~~L~~~gvs~~r~~i~p~Gl~lP-h~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~  106 (466)
T 3kgl_A           28 IEVWDHHAPQLRCSGVSFVRYIIESKGLYLP-SFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQG  106 (466)
T ss_dssp             EEECCTTSHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC---------
T ss_pred             EEEECCCChhhccCCeEEEEEEECCCCEeCC-eeCCCCeEEEEEeCeEEEEEecCCCcchhhcccccccccccccccccc
Confidence            3445555422   368999999999999986 6778889999999999765310                          


Q ss_pred             --------------------------------------EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          218 --------------------------------------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       218 --------------------------------------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                                                            +.+.|++||+|++|+|.+||+.|+|+++|++|+.-|.+-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n  183 (466)
T 3kgl_A          107 QGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLAS  183 (466)
T ss_dssp             --------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEESSS
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCC
Confidence                                                  236899999999999999999999999999999998753

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.67  E-value=1.4e-08  Score=85.09  Aligned_cols=67  Identities=18%  Similarity=0.461  Sum_probs=53.6

Q ss_pred             EEEEecCCcc---------cCcceeeccceEEEEEEceEEEEe--CCEEEE--ccCCcEEEeCCCCceeEEeCCCccEEE
Q 025000          182 HIMDFQPGDF---------LNVKEVHYNQHGLLLLEGQGIYRL--GDSWYP--VQAGDVLWMAPFVPQWYAALGKTRTRY  248 (259)
Q Consensus       182 ~~~t~~PG~~---------~~~~~~H~~eh~~~il~G~g~~~~--~g~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~f  248 (259)
                      -.+++.|+..         .+. |+|..+|.+|||+|+|.+.+  ||+|+.  +++||+|++|+|.+|++.+..+..++-
T Consensus        74 D~i~~~~~~p~~~~~~~~~~~~-H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~  152 (179)
T 1zrr_A           74 DVISLRADNPQKEALREKFLNE-HTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTA  152 (179)
T ss_dssp             EEECCCTTCTHHHHHHHHHHSC-BEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEE
T ss_pred             cEEEEcCCCCChhHhhcccccc-eECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEE
Confidence            3555666632         343 78888999999999999988  899855  999999999999999999876655554


Q ss_pred             E
Q 025000          249 L  249 (259)
Q Consensus       249 i  249 (259)
                      +
T Consensus       153 i  153 (179)
T 1zrr_A          153 I  153 (179)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.61  E-value=1.2e-07  Score=77.85  Aligned_cols=84  Identities=12%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             CCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC
Q 025000           46 WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE  125 (259)
Q Consensus        46 ~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~  125 (259)
                      ..+.....|..... ....+.+++++||+..+.|.|.+.|.+|||+|+.++.- .+  ..+++||+++.|+|..|+..+.
T Consensus        26 ~~Gv~~~~L~~d~~-~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~e-~~--~~~~~Gd~~~~P~g~~H~~~~~  101 (159)
T 3ebr_A           26 SNDVMVKYFKIDPV-RGETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYKE-HD--WVAHAGSVVYETASTRHTPQSA  101 (159)
T ss_dssp             CSSSEEEEEEEETT-TTEEEEEEEECSSCBCCCEEESSCEEEEEEESCEEETT-SS--CCBCTTCEEEECSSEEECEEES
T ss_pred             CCCEEEEEeeEcCC-CCeEEEEEEECCCCCcccccCCCCEEEEEEEeEEEEeC-CC--eEECCCeEEEECCCCcceeEeC
Confidence            44566666653322 23566789999999999998877888899999988542 33  4799999999999999999886


Q ss_pred             ----CeEEEEEE
Q 025000          126 ----GSATLVVF  133 (259)
Q Consensus       126 ----~~a~~l~v  133 (259)
                          +.|.++++
T Consensus       102 ~~~~e~~~~~~~  113 (159)
T 3ebr_A          102 YAEGPDIITFNI  113 (159)
T ss_dssp             SSSSSCEEEEEE
T ss_pred             CCCCCCEEEEEE
Confidence                56777775

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.60  E-value=1.2e-07  Score=78.53  Aligned_cols=67  Identities=25%  Similarity=0.377  Sum_probs=55.9

Q ss_pred             ecCCCcCCCCCCCceEEEEEEECEEEEEEcC-C--cEEEEeCCcEEEeCCCCcEEEEeCC-eEEEEEEEEe
Q 025000           70 MQENARSALPPHDVERFIFVVQGSAMLTNAS-G--VSSKLMVDSYTYLPPNFAHSLRAEG-SATLVVFERR  136 (259)
Q Consensus        70 l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-g--e~~~L~~Gd~i~~p~~~~H~~~N~~-~a~~l~v~~~  136 (259)
                      -.|++....|.|+.+|++||++|++.+.+.+ |  ++..|++||.+.+|+|++|+-...+ .+..+++.++
T Consensus        42 ~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~~e~~~lviE~~  112 (174)
T 1yfu_A           42 GGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQ  112 (174)
T ss_dssp             CSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEEEEEC
T ss_pred             cCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccCCCCEEEEEEeC
Confidence            3466667888889999999999999999932 2  4799999999999999999987655 7788888766

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.56  E-value=2.5e-07  Score=78.17  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             CCCCCCceEEEEEEECEEEEEEcCCc-----EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCCCcc
Q 025000           77 ALPPHDVERFIFVVQGSAMLTNASGV-----SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE  146 (259)
Q Consensus        77 ~~h~~~~Eef~yVl~G~l~v~v~~ge-----~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~~p~  146 (259)
                      ..|.|..+|++||++|++.+.+ +++     ...+++||.+++|+|++|++.+.+. ..+...+.|.+.+|+.|.
T Consensus        98 ~~H~H~~~Ei~yVleG~G~f~i-~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~-~~~~airlF~~~~~W~~~  170 (191)
T 1vr3_A           98 EEHLHLDEEIRYILEGSGYFDV-RDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK-NYVKAMRLFVGEPVWTPY  170 (191)
T ss_dssp             SCEECSSCEEEEEEEEEEEEEE-ECTTSCEEEEEEETTEEEEECTTCCEEEEECTT-CCEEEEEEESSSCCCCCE
T ss_pred             cceECCcceEEEEEeceEEEEE-CCCCCeEEEEEECCCCEEEECcCCcCCcccCCC-CCEEEEEEECCCCCccCC
Confidence            5677888999999999999999 653     4599999999999999999998443 223334456666776544

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.56  E-value=2.3e-07  Score=89.04  Aligned_cols=89  Identities=11%  Similarity=0.088  Sum_probs=72.7

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC---------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  216 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---------------------------  216 (259)
                      +..+++....   ....+.+++|+|||-.+. |.|...+.+||++|+|.+-+=                           
T Consensus        33 ~e~w~~~~p~l~~~Gvs~~R~~i~p~Gl~lP-h~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~~~~~~~~~~  111 (531)
T 3fz3_A           33 IETWNFNQGDFQCAGVAASRITIQRNGLHLP-SYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGRQQEQEQER  111 (531)
T ss_dssp             EEECCTTSHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEECEEEEEECCTTCCCCEECCCC--------------
T ss_pred             EEEeCCCChhhccCcceEEEEEecCCCEeCC-ccCCCCeEEEEEECcEEEEEEcCCCccccccccccccccccccccccc
Confidence            3334554333   357888999999999986 777888999999999866420                           


Q ss_pred             -----------------------------------------------------------CEEEEccCCcEEEeCCCCcee
Q 025000          217 -----------------------------------------------------------DSWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       217 -----------------------------------------------------------g~~~~v~~GD~i~~~~~~~H~  237 (259)
                                                                                 -|.+.|++||+|.+|+|+.||
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDviaiPaG~~~w  191 (531)
T 3fz3_A          112 QQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAGVAYW  191 (531)
T ss_dssp             -----------------------------------------------------CCSCEESCCEEEETTEEEEECTTCCEE
T ss_pred             cccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCCcEEEECCCCeEE
Confidence                                                                       236789999999999999999


Q ss_pred             EEeCCCccEEEEEEeecCC
Q 025000          238 YAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       238 ~~n~G~e~~~fi~~k~~nr  256 (259)
                      ++|.|+++|+.++.-|+|-
T Consensus       192 ~yN~G~~~l~iv~~~Dt~n  210 (531)
T 3fz3_A          192 SYNDGDQELVAVNLFHVSS  210 (531)
T ss_dssp             EECCSSSCEEEEEEEETTC
T ss_pred             EEeCCCceEEEEEEEcccc
Confidence            9999999999999999864

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.53  E-value=2.8e-07  Score=76.81  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=66.6

Q ss_pred             eEEEEEEecCCcccCcceeec------cceEEEEEEceEEEEeCCEE---------------------EEccCCcEEEeC
Q 025000          179 FNIHIMDFQPGDFLNVKEVHY------NQHGLLLLEGQGIYRLGDSW---------------------YPVQAGDVLWMA  231 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~------~eh~~~il~G~g~~~~~g~~---------------------~~v~~GD~i~~~  231 (259)
                      +....+.+.||..+|.|.|..      -+|.+++++|+..++++|+.                     ..++|||.+.++
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIp  132 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIP  132 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEEC
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEEC
Confidence            777899999999999866656      67888899999999999866                     599999999999


Q ss_pred             CCCceeEEeCCCccEEEEEEeecCCC
Q 025000          232 PFVPQWYAALGKTRTRYLLYKDVNRN  257 (259)
Q Consensus       232 ~~~~H~~~n~G~e~~~fi~~k~~nr~  257 (259)
                      ||.+|+|+| |.+.+...-+--+|.|
T Consensus       133 pg~~H~f~a-geegvli~EvSt~~dD  157 (175)
T 2y0o_A          133 PNTKHWFQA-GEEGAVVTEMSSTSTD  157 (175)
T ss_dssp             TTCCEEEEE-EEEEEEEEEEEECCCG
T ss_pred             CCCcEEEEe-CCCCEEEEEEeCCCCC
Confidence            999999999 5566777777777654

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=98.51  E-value=1.2e-05  Score=71.69  Aligned_cols=174  Identities=8%  Similarity=0.126  Sum_probs=108.6

Q ss_pred             EEecCCCcCCCC--CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCc-EEEEe---CCeEEEEEEEEeccccC
Q 025000           68 ANMQENARSALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLE  141 (259)
Q Consensus        68 ~~l~Pg~~~~~h--~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~-H~~~N---~~~a~~l~v~~~y~p~~  141 (259)
                      ++|++|......  ....|-.++.|.|.++|++ +|+++.|+.-|++|+|.|.. -.+..   ..+++|.+...+   .+
T Consensus        62 l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~v-dg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~sAP---a~  137 (289)
T 1ywk_A           62 LEIILDKELGVDYFLERRELGVINIGGPGFIEI-DGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVP---AH  137 (289)
T ss_dssp             EECCCSGGGTSSSTTTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEE---CS
T ss_pred             EEcCCCceecccccCCCcEEEEEEccCeEEEEE-CCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccc---cC
Confidence            456666544443  4677778888999999999 99999999999999999977 55665   457999988655   34


Q ss_pred             CCCcceeeccCCCCCCcccC---C-ceEEEEEeeC-CCCC-cceEEEEEEecCCc---ccCcceeec--cceEEEE-EEc
Q 025000          142 NHITEQIVGSTDKQPLLETP---G-EVFQLRKLLP-QAVP-FDFNIHIMDFQPGD---FLNVKEVHY--NQHGLLL-LEG  209 (259)
Q Consensus       142 g~~p~~~v~~~~di~~~~~~---g-~~~~~~~l~p-~~~~-~~~~~~~~t~~PG~---~~~~~~~H~--~eh~~~i-l~G  209 (259)
                      +.-|..++. .+|+..+...   + ....+..+++ +... .+..|-...+.||+   +.| .|+|.  +|..||. +..
T Consensus       138 ~~~P~r~I~-~~dv~~~~rG~~~~sN~R~I~~il~~~~~~s~qllmg~evltpGg~WSSyP-pHkHDrr~E~yyYF~l~p  215 (289)
T 1ywk_A          138 HKYPNVKIS-IDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQMGYTILEPGSAWNTMP-CHTHERRMEAYVYFDMEE  215 (289)
T ss_dssp             SCCCCEEEC-TTTCCCCCBCCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCCCC---------CEEEEEEESCCT
T ss_pred             CCCCCEEEC-HHHCCeeeccCCCCCCcEEEEEeeCCCCCchheEEEEEEEEeCCCCcCCCC-CccCCCCCeeEEEEEeCC
Confidence            333444443 5666666653   2 1235656664 4343 45667778888997   244 35664  3333333 232


Q ss_pred             e-EEEEeCC---EE--EEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          210 Q-GIYRLGD---SW--YPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       210 ~-g~~~~~g---~~--~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      + ..+...|   +.  ..|+-||++.+|++--|.  ..|.....||
T Consensus       216 ~~~v~h~~g~pdEtrh~~V~n~daVlvP~wgyHp--~~Gt~~Y~yl  259 (289)
T 1ywk_A          216 DTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHS--GVGTSNYSFI  259 (289)
T ss_dssp             TCCEEEEESSTTSCEEEEECTTEEEEECTTSCCC--EEESSCCEEE
T ss_pred             CCeEEEECCCCCceEEEEEECCCEEEeCCCcccC--CCCCcCeEEE
Confidence            2 2444333   34  678999999999976774  3344444444

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=98.48  E-value=5.8e-05  Score=67.14  Aligned_cols=183  Identities=15%  Similarity=0.185  Sum_probs=120.3

Q ss_pred             cEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEe--CCeEEEE--EEE
Q 025000           62 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGSATLV--VFE  134 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N--~~~a~~l--~v~  134 (259)
                      .|.++--.+.|+.+-+.| +.+.|.+=||++|+++=.---|..-++++||.=+.-||  +.|+=.|  +++++++  |+.
T Consensus        38 pf~~ld~~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvn  117 (277)
T 2p17_A           38 PFLLLMEDIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLWVN  117 (277)
T ss_dssp             TEEEEEEEEECTTCCCCEEECSEEEEEEEEESCEEEEETTTEEEEECTTCEEEEECTTCEEEEEEECTTCCEEEEEEEEE
T ss_pred             CEEEEecCCCCCCCCCCCCCCCcEEEEEEEEeEEEEeeCCCCceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEEEEee
Confidence            344443367787777777 56788888999999987752366679999999999885  4687777  3455554  553


Q ss_pred             EeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCC--------CCCcceEEEEEEecCCcccCcceeeccceEEEE
Q 025000          135 RRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQ--------AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLL  206 (259)
Q Consensus       135 ~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~--------~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~i  206 (259)
                      -+- ...+.+|..--...+++|....+|  ...+.+...        ....+..+.-++|+||+.+.+.-....+-.+|+
T Consensus       118 LP~-~~k~~~P~y~~~~~~~ip~~~~~g--~~~rviaG~~~g~~~p~~~~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv  194 (277)
T 2p17_A          118 LPS-AYKMTEPRYQNLRSKDMPVRKEEG--ATIRVFSGSSKGVKAPTKNIVPVTMVEMIVEPGTTVVQDLPGHYNGFLYI  194 (277)
T ss_dssp             CCG-GGTTCCCEEEEECGGGSCEEEETT--EEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEEEETTCEEEEEE
T ss_pred             CCh-hhcCCCCcceeeccccCCeeeeCC--eEEEEEEcCccCCCCceecCCCCEEEEEEECCCCEEEeccCCCCEEEEEE
Confidence            221 123445665555566777654444  245554421        122467777889999999765323345566899


Q ss_pred             EEceEEEEeCCEEEEccCCcEEEeCC-C----CceeEEeCCCccEEEEEE
Q 025000          207 LEGQGIYRLGDSWYPVQAGDVLWMAP-F----VPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       207 l~G~g~~~~~g~~~~v~~GD~i~~~~-~----~~H~~~n~G~e~~~fi~~  251 (259)
                      ++|+..  +||+...+.+||.+++.+ +    ..=.+.+.  ++.++|++
T Consensus       195 ~~G~v~--v~g~~~~l~~~d~~~~~~~~~~~~~~l~l~a~--~~a~~Ll~  240 (277)
T 2p17_A          195 LEGSGV--FGADNIEGKAGQALFFSRHNRGEETELNVTAR--EKLRLLLY  240 (277)
T ss_dssp             EESEEE--ETTTTEEEETTEEEEECCCCTTCEEEEEEEES--SSEEEEEE
T ss_pred             EeCeEE--ECCCceEeCCCcEEEEcCCCCCccceEEEEeC--CCcEEEEE
Confidence            999855  477334699999999986 6    44556664  46777765

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=98.47  E-value=9.4e-06  Score=72.09  Aligned_cols=162  Identities=8%  Similarity=0.088  Sum_probs=107.7

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCc-EEEEe---CCeEEEEEEEEeccccCCCCcceeeccCCCC
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  155 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~-H~~~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di  155 (259)
                      ....|-.++.|.|.++|++ +|+++.|+.-|++|+|.|.. -.+..   ..+++|.+...+   .++.-|..++. .+|+
T Consensus        76 l~~rE~~iV~l~G~~~V~v-dG~~f~lg~~dalYVp~g~~~v~~as~da~~~a~fav~sAP---a~~~~P~r~I~-~~dv  150 (282)
T 1xru_A           76 LERRELGVINIGGAGTITV-DGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAP---AHTTYPTKKVT-PDEV  150 (282)
T ss_dssp             TTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEE---CSSCCCCEEEC-HHHH
T ss_pred             cCCcEEEEEEccCeEEEEE-CCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccc---cCCCCCCEEEC-HHHC
Confidence            4567778888999999999 99999999999999999997 55664   237999888655   34332444433 4455


Q ss_pred             CCcccC---C-ceEEEEEeeC-CCCC-cceEEEEEEecCCc---ccCcceeec--cceEEEE-EE--ceE--EEEeCCEE
Q 025000          156 PLLETP---G-EVFQLRKLLP-QAVP-FDFNIHIMDFQPGD---FLNVKEVHY--NQHGLLL-LE--GQG--IYRLGDSW  219 (259)
Q Consensus       156 ~~~~~~---g-~~~~~~~l~p-~~~~-~~~~~~~~t~~PG~---~~~~~~~H~--~eh~~~i-l~--G~g--~~~~~g~~  219 (259)
                      ......   + ....+..+++ +... -+..|-...+.||+   +.| .|+|.  +|+.||. +.  |.+  ++.-.++.
T Consensus       151 ~~~~rG~~~~sn~R~I~~il~~~~~~~~qllmg~evltpgg~WSSyP-pHkHDrr~EeyyYF~l~~~gfv~q~~g~p~Et  229 (282)
T 1xru_A          151 SPVTLGDNLTSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMP-CHTHERRMEVYFYFNMDDDACVFHMMGQPQET  229 (282)
T ss_dssp             CCEEECCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCEESCS-EEECTTEEEEEEEESCCTTCCEEEEEEETTEE
T ss_pred             CeeeccCCCCCCcEEEEEeeCCCCCchhhEEEEEEEEeCCCCcCCCC-CccCCCCceEEEEEEeCCCCEEEEEeCCCCCe
Confidence            555542   2 1235656664 4333 45667778888997   345 46664  4555555 22  222  23333444


Q ss_pred             --EEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          220 --YPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       220 --~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                        ..|+-||++.+|++-+|+  ..|.+...||
T Consensus       230 rhi~V~n~daVlvP~wh~h~--~~G~~~Y~yl  259 (282)
T 1xru_A          230 RHIVMHNEQAVISPSWSIHS--GVGTKAYTFI  259 (282)
T ss_dssp             EEEEECSSEEEEECTTCEEE--EEESSCCEEE
T ss_pred             eEEEEECCCEEEeCCCCCCC--CCCccceEEE
Confidence              567999999999766677  4477777776

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.47  E-value=5.4e-07  Score=77.93  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             cCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEe
Q 025000          151 STDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM  230 (259)
Q Consensus       151 ~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~  230 (259)
                      +.++.++++....++..+.|.-.+....+.++++.++||+.+|. |+|...|.+|||+|.-.  +++.  ...+||+++.
T Consensus        15 ~~~~~~W~~~~~~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~-H~H~g~Ee~~VL~G~f~--d~~~--~~~~Gd~~~~   89 (223)
T 3o14_A           15 DTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSA-HTHDGGEEFIVLDGVFQ--DEHG--DYPAGTYVRN   89 (223)
T ss_dssp             EGGGSCCEECSSTTEEEEEEEEESSSSCEEEEEEEECTTEECCC-EECTTCEEEEEEEEEEE--ETTE--EEETTEEEEE
T ss_pred             eCccCCceeCCCCCEEEEEeecCCCccccEEEEEEECCCCCccc-ccCCCCEEEEEEEeEEE--ECCe--EECCCeEEEe
Confidence            66778888874445566666432222335677899999999997 77877788999999854  5554  6779999999


Q ss_pred             CCCCceeEEeCCCccEEE
Q 025000          231 APFVPQWYAALGKTRTRY  248 (259)
Q Consensus       231 ~~~~~H~~~n~G~e~~~f  248 (259)
                      ++|..|+..+  ++.|..
T Consensus        90 P~g~~H~p~a--~~gc~~  105 (223)
T 3o14_A           90 PPTTSHVPGS--AEGCTI  105 (223)
T ss_dssp             CTTCEECCEE--SSCEEE
T ss_pred             CCCCccccEe--CCCCEE
Confidence            9999999987  555553

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.47  E-value=1.3e-06  Score=69.84  Aligned_cols=69  Identities=12%  Similarity=0.009  Sum_probs=56.1

Q ss_pred             EEEEecCCCcC-----CCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-C--CeEEEEEEEE
Q 025000           66 YLANMQENARS-----ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-E--GSATLVVFER  135 (259)
Q Consensus        66 ~~~~l~Pg~~~-----~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~--~~a~~l~v~~  135 (259)
                      ......|+...     .+|.|+.-+++||++|++++.+ +|+++.+++||.+++|||..|.+.+ .  ++.+.+|+..
T Consensus        16 G~~~~~~~~~~~~~~~~p~~h~~~~i~~v~~G~~~~~i-~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f   92 (164)
T 2arc_A           16 GLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKN-QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF   92 (164)
T ss_dssp             EEEEEETTSTTCSCEEETTCCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEE
T ss_pred             cceeeccCCchhhhhccccCCCceEEEEEEEeEEEEEE-CCEEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEE
Confidence            34455665443     2456788899999999999999 9999999999999999999999998 3  4577777753

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=98.46  E-value=3.2e-05  Score=67.50  Aligned_cols=167  Identities=11%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             EEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEe---CCeEEEE--EEEEecc
Q 025000           67 LANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA---EGSATLV--VFERRYA  138 (259)
Q Consensus        67 ~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N---~~~a~~l--~v~~~y~  138 (259)
                      ...+.||.+-+.| +.+.|.+-||++|+++=.---|..-++++||.-+..||  +.|+=.|   +++++++  |+. |- 
T Consensus        45 ~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv~-P~-  122 (242)
T 1tq5_A           45 DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM-PE-  122 (242)
T ss_dssp             EEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEEC-CS-
T ss_pred             cceeCCCCcCCCcCCCCcEEEEEEEEeEEEEEeCCCCcEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEEc-ch-
Confidence            6678898777777 56788899999999998752277789999999999665  7898888   2355554  663 32 


Q ss_pred             ccCCCCcceeeccCCCCCCcccCCceEEEEEee-CCC------CCcceEEEEEEecCCcccCcceeeccceEEEEEEceE
Q 025000          139 SLENHITEQIVGSTDKQPLLETPGEVFQLRKLL-PQA------VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG  211 (259)
Q Consensus       139 p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~-p~~------~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g  211 (259)
                       ..+.+|..--..   +|... +|     +.+. +..      ...+..+-.++|+||+.+-+.-.....--+|+++|+.
T Consensus       123 -~k~~~P~y~~~~---~p~~~-~g-----~~iag~~g~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v  192 (242)
T 1tq5_A          123 -ENGITPRYEQRR---FDAVQ-GK-----QLVLSPDARDGSLKVHQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNV  192 (242)
T ss_dssp             -SCSCCCEEEEEC---CCCCS-SE-----EEEEESSCGGGCEECSSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEE
T ss_pred             -hcCCCCcceeec---CCchh-CC-----EEEEecCCCCCcEeccCCCEEEEEEECCCCEEEeecCCCcEEEEEEccCcE
Confidence             133344433322   43322 22     2222 211      1235667778999999874422222334478999977


Q ss_pred             EEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          212 IYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       212 ~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+  ||+  .+++||.+.+.++..=.+++  .++.++|++
T Consensus       193 ~v--~g~--~l~~gd~~~~~~~~~l~l~a--~~~a~~Ll~  226 (242)
T 1tq5_A          193 TI--NGV--KASTSDGLAIWDEQAISIHA--DSDSEVLLF  226 (242)
T ss_dssp             EE--TTE--EEETTCEEEEESCSCEEEEE--SSSEEEEEE
T ss_pred             EE--CCE--EeCCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            55  774  69999999999877767776  467888775

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=98.44  E-value=3.2e-06  Score=65.84  Aligned_cols=72  Identities=15%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      .+....-+..||.-. ......+|++|||+|+++++..+|+..++++||+++||+|..-+|.-.+++|=+++.
T Consensus        41 ~~~~GvWe~tPG~~~-~~~~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~G~~gtWev~e~vrK~~~~  112 (116)
T 3es4_A           41 GTIVAVWMAEPGIYN-YAGRDLEETFVVVEGEALYSQADADPVKIGPGSIVSIAKGVPSRLEILSSFRKLATV  112 (116)
T ss_dssp             CCEEEEEEECSEEEE-ECCCSEEEEEEEEECCEEEEETTCCCEEECTTEEEEECTTCCEEEEECSCEEEEEEE
T ss_pred             CEEEEEEecCCceeE-CeeCCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEECCCCeEEEEEeEEEeEEEEE
Confidence            444455577788543 223455699999999999998557889999999999999999999987777655553

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.41  E-value=5.8e-07  Score=73.34  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=75.3

Q ss_pred             ceEEECCCCceeccCCC---CCcceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cE
Q 025000           29 DHALITPESHVLSPLPE---WTNTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VS  103 (259)
Q Consensus        29 ~~avi~pe~~v~~~lp~---~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~  103 (259)
                      ...++.++...+...|.   ..+...+.|-... .+.....++.++||+..+.|.|.+.|.+|||+|+....- ++  +.
T Consensus        10 ~~~~v~~d~~~W~p~P~~l~~~Gv~~k~L~~~~-e~g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~~-Gd~~~~   87 (153)
T 3bal_A           10 AEEYVKISDNNYVPFPEAFSDGGITWQLLHSSP-ETSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRG-GEQEGG   87 (153)
T ss_dssp             CCEEEECCGGGCEECCGGGEESCCEEEEEEEET-TTTEEEEEEEECTTEEECCEEESSCEEEEEEESEEEETT-CGGGTS
T ss_pred             cceEEccccCceecCCCccCCCCeEEEEEEECC-ccceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEecC-ccccCc
Confidence            45777888777766651   3466666663322 345666788999999999998877888999999998763 44  34


Q ss_pred             EEEeCCcEEEeCCCCcEEE-EeCCeEEEEEE
Q 025000          104 SKLMVDSYTYLPPNFAHSL-RAEGSATLVVF  133 (259)
Q Consensus       104 ~~L~~Gd~i~~p~~~~H~~-~N~~~a~~l~v  133 (259)
                      ..+++|++++-|+|..|.. ..++.+.++++
T Consensus        88 ~~~~aGsYv~ePpGs~H~p~~~~~~~~~~~~  118 (153)
T 3bal_A           88 STAYAPSYGFESSGALHGKTFFPVESQFYMT  118 (153)
T ss_dssp             EEEESSEEEEECTTCEESCCEESSCEEEEEE
T ss_pred             cccCCCeEEEcCCCCcccceeCCCCeEEEEE
Confidence            7899999999999999984 44555555554

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.40  E-value=6.9e-07  Score=72.91  Aligned_cols=90  Identities=11%  Similarity=0.003  Sum_probs=67.9

Q ss_pred             eeccCCCCCCcccC----CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCE--EEE
Q 025000          148 IVGSTDKQPLLETP----GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYP  221 (259)
Q Consensus       148 ~v~~~~di~~~~~~----g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~--~~~  221 (259)
                      .+-+.+++++.+.+    ..++.++.|.-. ......+.++.++||+.+|. |.|...+.+|||||+-.+.-++.  ...
T Consensus        12 ~~v~~d~~~W~p~P~~l~~~Gv~~k~L~~~-~e~g~~t~lvr~~pG~~~p~-H~H~g~ee~~VL~G~~~~~~Gd~~~~~~   89 (153)
T 3bal_A           12 EYVKISDNNYVPFPEAFSDGGITWQLLHSS-PETSSWTAIFNCPAGSSFAS-HIHAGPGEYFLTKGKMEVRGGEQEGGST   89 (153)
T ss_dssp             EEEECCGGGCEECCGGGEESCCEEEEEEEE-TTTTEEEEEEEECTTEEECC-EEESSCEEEEEEESEEEETTCGGGTSEE
T ss_pred             eEEccccCceecCCCccCCCCeEEEEEEEC-CccceEEEEEEeCCCCCccC-ccCCCCEEEEEEEEEEEecCccccCccc
Confidence            34457788888885    456677776311 12446677899999999997 78888888999999998755432  356


Q ss_pred             ccCCcEEEeCCCCceeEE
Q 025000          222 VQAGDVLWMAPFVPQWYA  239 (259)
Q Consensus       222 v~~GD~i~~~~~~~H~~~  239 (259)
                      +++|++++.++|..|...
T Consensus        90 ~~aGsYv~ePpGs~H~p~  107 (153)
T 3bal_A           90 AYAPSYGFESSGALHGKT  107 (153)
T ss_dssp             EESSEEEEECTTCEESCC
T ss_pred             cCCCeEEEcCCCCcccce
Confidence            789999999999999843

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.40  E-value=8.7e-07  Score=73.35  Aligned_cols=65  Identities=18%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEcC-C------cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTNAS-G------VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-g------e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      |++....|++..||++||++|++.+.+.+ |      +...|++||.+.+|+|++|+-.....+..+++.++
T Consensus        43 Pn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~v~lviErk  114 (176)
T 1zvf_A           43 PNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVVEQD  114 (176)
T ss_dssp             SBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEEC
T ss_pred             CCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCcEEEEEEec
Confidence            44667788889999999999999999833 4      47999999999999999999865555666777655

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.37  E-value=2.3e-06  Score=71.06  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=62.0

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEE---cCC-----cEEEEeCCcEEEeCCCCcEEEEeCCeEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTN---ASG-----VSSKLMVDSYTYLPPNFAHSLRAEGSATL  130 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v---~~g-----e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~  130 (259)
                      ..+|+++++...||+.++.|.|+ ...++.||+|+++.++   .++     ++..|++||..++|++..|+++|.++ +.
T Consensus        66 ~~~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~-~~  144 (171)
T 3eqe_A           66 NNELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTS-ER  144 (171)
T ss_dssp             CSSCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSS-SC
T ss_pred             CCCeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCC-CC
Confidence            35899999999999999999776 5788889999998764   134     46789999999999999999999432 22


Q ss_pred             EEEEEeccc
Q 025000          131 VVFERRYAS  139 (259)
Q Consensus       131 l~v~~~y~p  139 (259)
                      .+....|.|
T Consensus       145 aVSlHvY~p  153 (171)
T 3eqe_A          145 MVSLHVYSP  153 (171)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEeCC
Confidence            334444654

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.36  E-value=1.5e-06  Score=72.48  Aligned_cols=65  Identities=17%  Similarity=0.135  Sum_probs=54.5

Q ss_pred             cEEEEEEEecCCCcCCCCCCC-------ceEEEEEEECEEEEEEcCCcE---------------------EEEeCCcEEE
Q 025000           62 HFVMYLANMQENARSALPPHD-------VERFIFVVQGSAMLTNASGVS---------------------SKLMVDSYTY  113 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~-------~Eef~yVl~G~l~v~v~~ge~---------------------~~L~~Gd~i~  113 (259)
                      +++.-++.+.||+..+.|.|.       -+|-++|+.|++++.+ +|+.                     ..|+|||++.
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~-~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt  130 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV-EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT  130 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE-SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE-CCccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence            588889999999988877433       5566679999999999 7765                     4999999999


Q ss_pred             eCCCCcEEEEe-CCe
Q 025000          114 LPPNFAHSLRA-EGS  127 (259)
Q Consensus       114 ~p~~~~H~~~N-~~~  127 (259)
                      +|+|+.|++.| .+.
T Consensus       131 Ippg~~H~f~ageeg  145 (175)
T 2y0o_A          131 IPPNTKHWFQAGEEG  145 (175)
T ss_dssp             ECTTCCEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCC
Confidence            99999999999 444

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=98.31  E-value=0.00011  Score=64.68  Aligned_cols=171  Identities=12%  Similarity=0.060  Sum_probs=110.9

Q ss_pred             EEEEEecCCCcCCCCC-CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCC--CCcEEEEe---CCeEEEE--EEEEe
Q 025000           65 MYLANMQENARSALPP-HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP--NFAHSLRA---EGSATLV--VFERR  136 (259)
Q Consensus        65 ~~~~~l~Pg~~~~~h~-~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~--~~~H~~~N---~~~a~~l--~v~~~  136 (259)
                      +-..++.||.+.+.|. .+.|.+-||++|+++-.---|...++++||.-+..|  |+.|+=.|   +++++++  |+.- 
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi~l-  144 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDA-  144 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEESEEEEEETTSCEEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEEEC-
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEeeEEEEEeCCCCEEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEEeC-
Confidence            3367788998777774 567778899999999885227788999999999977  56899888   2456554  5541 


Q ss_pred             ccccCCCCcceeeccCCCCCCcccCCceEEEEEee-CCC------CCcceEEEEEEecCCcccCcceeeccceEEEEEEc
Q 025000          137 YASLENHITEQIVGSTDKQPLLETPGEVFQLRKLL-PQA------VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEG  209 (259)
Q Consensus       137 y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~-p~~------~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G  209 (259)
                       .| ....|..--.   ++|    ++ .  .+.+. +..      ...+..+..++|+||..+-+.-.... -.+|+++|
T Consensus       145 -~p-~~~~P~yq~~---~~p----~~-~--~~lIag~~G~~~p~~~~~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G  211 (256)
T 2vec_A          145 -CP-QRENPLIQKL---ALN----MG-K--QQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPR-AYLQSIHG  211 (256)
T ss_dssp             -CT-TSCCCSEEEE---ECC----CS-S--EEEEEESSCGGGCEECSSSCEEEEEEECTTCEEEEECSSSE-EEEEEEES
T ss_pred             -Ch-hcCCCCceEE---cCC----CC-C--EEEEEeCCCCCCceEccCCcEEEEEEECCCCEEEEecCCCe-EEEEEEEC
Confidence             12 1112222111   122    12 2  13332 211      12356677789999998754222223 55789999


Q ss_pred             eEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          210 QGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       210 ~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +..+.-+ ++...+.+||.+++.++..=.+++  .+++++|++
T Consensus       212 ~v~v~g~~~~~~~l~~gd~~~l~~~~~l~l~a--~~~a~~LL~  252 (256)
T 2vec_A          212 KFHALTHHEEKAALTCGDGAFIRDEANITLVA--DSPLRALLI  252 (256)
T ss_dssp             CEEEEETTEEEEEECTTCEEEEESCSEEEEEE--SSSEEEEEE
T ss_pred             EEEECCccccceEECCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            8877532 245679999999999876666665  478888876

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=98.31  E-value=4.7e-05  Score=68.17  Aligned_cols=184  Identities=10%  Similarity=0.053  Sum_probs=121.5

Q ss_pred             EEEE-EEEecCCCcCCCC-CCCceEEEEEE-ECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEe--CCeEEEE--EE
Q 025000           63 FVMY-LANMQENARSALP-PHDVERFIFVV-QGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGSATLV--VF  133 (259)
Q Consensus        63 f~~~-~~~l~Pg~~~~~h-~~~~Eef~yVl-~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N--~~~a~~l--~v  133 (259)
                      |.++ ...+.|+.+-+.| +.+.|.+-||+ +|+++=.---|..-++++||.=+.-||  +.|+=.|  +++++++  |+
T Consensus        39 f~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWv  118 (290)
T 1j1l_A           39 FLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWV  118 (290)
T ss_dssp             EEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEE
T ss_pred             EEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEeeCCCCceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEEe
Confidence            4443 5567788766667 56788888999 999987752366779999999999885  4587667  3455554  55


Q ss_pred             EEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCC--------CCCcceEEEEEEecCCcccCcceeeccceEEE
Q 025000          134 ERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQ--------AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLL  205 (259)
Q Consensus       134 ~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~--------~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~  205 (259)
                      .-+ ....+.+|..--...+++|....+|  +.++.+..+        ....+..+--++|+||+.+-+.-...++-.+|
T Consensus       119 nLP-~~~k~~~P~y~~~~~~~ip~~~~~g--~~v~viaG~~~g~~~p~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~ly  195 (290)
T 1j1l_A          119 NLR-SSEKMVEPQYQELKSEEIPKPSKDG--VTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIY  195 (290)
T ss_dssp             ECC-GGGTTSCCEEEEECGGGSCCCEETT--EEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEE
T ss_pred             cCC-hhhcCCCCcceecccccCCcEeECC--EEEEEEcCCcccCCCceeccCCcEEEEEEECCCCEEEeecCCCCEEEEE
Confidence            322 1123444554444445677554443  345554322        11235667778999999874322223456689


Q ss_pred             EEEceEEEEeCCE--EEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          206 LLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       206 il~G~g~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +++|+..+  ||+  ..++.++..++..++..=.+.|.+++++++|++
T Consensus       196 v~~G~v~v--~g~~~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl  241 (290)
T 1j1l_A          196 TISGDVYI--GPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  241 (290)
T ss_dssp             EEESCEEE--SCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             EEeCeEEE--CCcccceeccCceEEEecCCCEEEEEEcCCCCcEEEEE
Confidence            99999876  442  256778999999988877787766788888876

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.28  E-value=3.8e-06  Score=71.81  Aligned_cols=75  Identities=15%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             EEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE----c------CCcEEEEeCCcEEEeCC--CC
Q 025000           51 GAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----A------SGVSSKLMVDSYTYLPP--NF  118 (259)
Q Consensus        51 ~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v----~------~ge~~~L~~Gd~i~~p~--~~  118 (259)
                      .+.++....+.+|+++++...||..++.|.|+...++.||+|+++.++    .      .+++.+|.+|+.++|++  |.
T Consensus        67 ~r~lL~~dp~~~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~  146 (208)
T 2gm6_A           67 QQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGD  146 (208)
T ss_dssp             EEEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBC
T ss_pred             eEEEeecCCCCCEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCC
Confidence            345555555678999999999999999998877999999999997654    1      23578999999999999  99


Q ss_pred             cEEEEeC
Q 025000          119 AHSLRAE  125 (259)
Q Consensus       119 ~H~~~N~  125 (259)
                      .|++.|.
T Consensus       147 iH~V~N~  153 (208)
T 2gm6_A          147 IHRVHNA  153 (208)
T ss_dssp             CEEEEES
T ss_pred             eEEeccC
Confidence            9999993

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=98.24  E-value=4.9e-06  Score=73.31  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=68.1

Q ss_pred             eCCCCC--cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEe--CCCCceeEEeCCC-c
Q 025000          171 LPQAVP--FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWM--APFVPQWYAALGK-T  244 (259)
Q Consensus       171 ~p~~~~--~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~--~~~~~H~~~n~G~-e  244 (259)
                      +|..+.  ..+.++.+++.||.-+|.|.|.++|-+-|||+|+....+. |....+++||+-||  ..|+.|+-.|..+ +
T Consensus        54 dP~~~~fg~l~vln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~  133 (256)
T 2vec_A           54 DPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDK  133 (256)
T ss_dssp             BTTBCSCCCEEEEEEEEECTTCEEEEECCSSEEEEEEEEESEEEEEETTSCEEEEETTEEEEECCCTTCCEEEEECCSSS
T ss_pred             CHhHhcCCceEeccccccCCCCccCCcCCCCcEEEEEEEeeEEEEEeCCCCEEEECCCeEEEEECCCCeEEEEEECCCCc
Confidence            455443  4567899999999999987777888889999999999999 99999999999999  6678999999765 7


Q ss_pred             cEEEEE
Q 025000          245 RTRYLL  250 (259)
Q Consensus       245 ~~~fi~  250 (259)
                      ++.+|-
T Consensus       134 ~l~~lQ  139 (256)
T 2vec_A          134 PLTRMQ  139 (256)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            888763

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.15  E-value=4e-07  Score=76.19  Aligned_cols=50  Identities=12%  Similarity=0.159  Sum_probs=42.1

Q ss_pred             CCCCCCceEEEEEEECEEEEEEc-CCcE--EEEeCCcEEEeCCCCcEEEEeCC
Q 025000           77 ALPPHDVERFIFVVQGSAMLTNA-SGVS--SKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus        77 ~~h~~~~Eef~yVl~G~l~v~v~-~ge~--~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      ..|.|..+|++||++|++.+.+. +|+.  ..+++||.+++|+|++|++.+.+
T Consensus        94 ~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~  146 (179)
T 1zrr_A           94 NEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGS  146 (179)
T ss_dssp             SCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSS
T ss_pred             cceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCC
Confidence            46778889999999999988762 5776  45999999999999999999833

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=98.10  E-value=1.4e-05  Score=69.74  Aligned_cols=79  Identities=14%  Similarity=-0.031  Sum_probs=67.2

Q ss_pred             CCCCC--cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEe--CCCCceeEEeCCC-cc
Q 025000          172 PQAVP--FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWM--APFVPQWYAALGK-TR  245 (259)
Q Consensus       172 p~~~~--~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~--~~~~~H~~~n~G~-e~  245 (259)
                      |..+.  .-+.++..++.||.-+|.|.|.++|-+-|||+|+....+. |....+++||+-||  ..|+.|+=.|..+ ++
T Consensus        32 P~~~~fg~l~v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~  111 (242)
T 1tq5_A           32 PNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTER  111 (242)
T ss_dssp             SSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCC
T ss_pred             hhHhcCCceEeeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEEeCCCCcEEECCCcEEEEECCCCcEEEEEcCCCCCe
Confidence            44444  3467889999999999988888888889999999999999 99999999999999  7778899999764 78


Q ss_pred             EEEEE
Q 025000          246 TRYLL  250 (259)
Q Consensus       246 ~~fi~  250 (259)
                      +.+|=
T Consensus       112 l~~lQ  116 (242)
T 1tq5_A          112 LHLYQ  116 (242)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88763

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.09  E-value=1.1e-05  Score=67.05  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=62.5

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe----CC-----EEEEccCCcEEEeCCCCc
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL----GD-----SWYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~----~g-----~~~~v~~GD~i~~~~~~~  235 (259)
                      ..|.|+-.+.+  +.+-.+...||..+|. |-|..+ -.+.||+|+...+.    +|     ....+++||+++.+++..
T Consensus        58 YtR~ll~~~~~--~~v~~l~W~PGq~S~i-HdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~i  134 (171)
T 3eqe_A           58 YGRNAIYRNNE--LEIIVINIPPNKETTV-HDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLI  134 (171)
T ss_dssp             SEEEEEEECSS--CEEEEEEECTTCBCCE-ECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCE
T ss_pred             EEEEEEecCCC--eEEEEEEECCCCCccc-ccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCE
Confidence            34555543433  4555899999999997 677654 55669999998653    44     578899999999999999


Q ss_pred             eeEEeCCCccEEEE
Q 025000          236 QWYAALGKTRTRYL  249 (259)
Q Consensus       236 H~~~n~G~e~~~fi  249 (259)
                      |.+.|.|+++++-|
T Consensus       135 H~V~N~~~~~aVSl  148 (171)
T 3eqe_A          135 HKMSNPTSERMVSL  148 (171)
T ss_dssp             EEEECCSSSCEEEE
T ss_pred             EEEECCCCCCEEEE
Confidence            99999999887654

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.07  E-value=5.3e-06  Score=66.33  Aligned_cols=56  Identities=9%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             CCCceEEEEEEECEEEEEEcC--------CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           80 PHDVERFIFVVQGSAMLTNAS--------GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~--------ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      |+..+|+++|++|++++.+ .        +....|++|+...+|.|+.|+-...+.++++++..+
T Consensus        47 H~~tDE~Fivl~G~l~i~~-rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~vLLiEp~  110 (140)
T 3d0j_A           47 HHSTDEQFILSAGKAILIT-AEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQDS  110 (140)
T ss_dssp             ESSCCEEEEEEESCEEEEE-EEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEEEEEEES
T ss_pred             CCCCCeEEEEEecEEEEEE-ecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEEEEEEeC
Confidence            4678999999999999998 5        347899999999999999999998888999999866

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=98.02  E-value=3.7e-05  Score=65.81  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE----cCC------cEEEEeCCcEEEeCCC--Cc
Q 025000           52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----ASG------VSSKLMVDSYTYLPPN--FA  119 (259)
Q Consensus        52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v----~~g------e~~~L~~Gd~i~~p~~--~~  119 (259)
                      +.++....+..|+++++...||..++.|.|+..-++.||+|+++-+.    .+|      ++.+|.+|+.++|.++  .-
T Consensus        62 r~lL~~dp~~~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~I  141 (211)
T 3uss_A           62 QYLLHVDSRQRFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDV  141 (211)
T ss_dssp             EEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCC
T ss_pred             EEEEecCCCCCEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCE
Confidence            45666566678999999999999999998889999999999997754    122      3578999999999998  89


Q ss_pred             EEEEeC
Q 025000          120 HSLRAE  125 (259)
Q Consensus       120 H~~~N~  125 (259)
                      |++.|.
T Consensus       142 H~V~N~  147 (211)
T 3uss_A          142 HQVSNA  147 (211)
T ss_dssp             EEEEES
T ss_pred             EEEccC
Confidence            999994

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.02  E-value=5.9e-05  Score=65.71  Aligned_cols=72  Identities=13%  Similarity=0.207  Sum_probs=57.0

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      ..+....-+..||..... .++.+|++|||+|+++++..+|+..++++||+++||+|..-.|.-.+.+|=+++
T Consensus       165 g~~~~GiW~~tpG~~~~~-~~~~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~~P~G~~~tWev~e~vrK~Yv  236 (238)
T 3myx_A          165 STLRIGVWDSTPYERISR-PHKIHELMNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYA  236 (238)
T ss_dssp             SSCEEEEEEECCEEBCCE-ECSSCEEEEEEECCEEEEETTSCEEEECTTCEEEECTTCEEEEEESSCEEEEEE
T ss_pred             CCEEEeEEEeCCCEEECC-cCCCCEEEEEEEeEEEEEeCCCCEEEECCCCEEEECCCCEEEEEECccEEEEEE
Confidence            456667777788763322 235689999999999999856788999999999999999999998776655444

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=98.00  E-value=6.4e-05  Score=68.12  Aligned_cols=147  Identities=12%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             CCceEEEEEEEC--EEEEEEcCC---------------------cEEEEeCCcEEEeCCCCcEEEEeCC-eEEEEE----
Q 025000           81 HDVERFIFVVQG--SAMLTNASG---------------------VSSKLMVDSYTYLPPNFAHSLRAEG-SATLVV----  132 (259)
Q Consensus        81 ~~~Eef~yVl~G--~l~v~v~~g---------------------e~~~L~~Gd~i~~p~~~~H~~~N~~-~a~~l~----  132 (259)
                      .+-.|..|+|+.  .+++.+ +.                     ....|++||++|+|||++|.+-... -+++..    
T Consensus       115 ~gKpE~~y~L~~~~~~~~~~-G~~~~~~e~l~~~i~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~~G~~~~Eiq~~SD~  193 (319)
T 1qwr_A          115 LGKTECWYIIDCKENAEIIY-GHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDA  193 (319)
T ss_dssp             CCCCEEEEEEEECTTCEEEE-EECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEECTTCCEEECSSEEEEEEEESCCC
T ss_pred             CCCCEEEEEccCCCchhhee-CCCCCCHHHHHHHHHcCCHHHhceEEEcCCCCEEEcCCCCceEecCCCeEEEEEeCCcc
Confidence            367899999985  344444 22                     4679999999999999999986411 122211    


Q ss_pred             EEEecc--c--cCCCCccee-------eccCCCCCCccc----CCceEEEEEeeCCCCCcceEEEEEEecCCcccCccee
Q 025000          133 FERRYA--S--LENHITEQI-------VGSTDKQPLLET----PGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEV  197 (259)
Q Consensus       133 v~~~y~--p--~~g~~p~~~-------v~~~~di~~~~~----~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~  197 (259)
                      +-+.|.  -  +.|. |..+       +.++...+....    ..++.....+.|.   .+|.+.++++.++..+   ..
T Consensus       194 t~R~yDy~R~g~~g~-pr~lhv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~F~~~~~~~~~~~~~---~~  266 (319)
T 1qwr_A          194 TYRVYDYDRLDSNGS-PRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQG---EYFSVYKWDINGEAEM---AQ  266 (319)
T ss_dssp             CEEEECTTCBCTTSC-BCCCCHHHHHHHSCSSCCCCCCCCEEEEETTEEEEEEEEC---SSCEEEEEEEEEEEEE---CC
T ss_pred             EEEcccccccCCCCC-cccCCHHHHHhhccccCCCcccccceeecCCceEEEeCCC---CEEEEEEEEECCceEE---cc
Confidence            112221  0  1111 2222       111111111000    0011122233332   3567777888755432   22


Q ss_pred             eccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc
Q 025000          198 HYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       198 H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~  235 (259)
                      ..-..++.|++|+|.+..+|+..++++||.+|+++++.
T Consensus       267 ~~~~~il~v~~G~~~l~~~~~~~~l~~G~~~~vpa~~~  304 (319)
T 1qwr_A          267 DESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMP  304 (319)
T ss_dssp             CSSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCC
T ss_pred             CCccEEEEEEcCeEEEEECCEEEEEcCCcEEEEeCCCc
Confidence            23447899999999999999999999999999999874

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.99  E-value=8.3e-05  Score=57.82  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=60.7

Q ss_pred             eccC-CCCCCcccC-C----ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEE
Q 025000          149 VGST-DKQPLLETP-G----EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYP  221 (259)
Q Consensus       149 v~~~-~di~~~~~~-g----~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~  221 (259)
                      +.|+ +|+...+.. +    +....|.|...+....+.+-+-...||... . ..+.+.|..|||+|++.++.+ |+.++
T Consensus         6 ~~~~~~~~~~~p~~pa~~r~~~~~~~~~~~~~~~g~~~~GvWe~tPG~~~-~-~~~~~~E~~~iLeG~~~lt~ddG~~~~   83 (116)
T 3es4_A            6 IFNISDDVDLVPAMPAEGRDGGSYRRQIWQDDVENGTIVAVWMAEPGIYN-Y-AGRDLEETFVVVEGEALYSQADADPVK   83 (116)
T ss_dssp             EEETTCCCSCEECCCCTTCSSCEEEEEEEECSSSSCCEEEEEEECSEEEE-E-CCCSEEEEEEEEECCEEEEETTCCCEE
T ss_pred             eEccccccCcCCCCCcceeecCcceEEEEeeCCCCCEEEEEEecCCceeE-C-eeCCCcEEEEEEEeEEEEEeCCCeEEE
Confidence            4567 777766642 1    223444444322222334446688899763 2 233445899999999999875 77899


Q ss_pred             ccCCcEEEeCCCCceeEEeC
Q 025000          222 VQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       222 v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +++||++++++|..--..-.
T Consensus        84 l~aGD~~~~P~G~~gtWev~  103 (116)
T 3es4_A           84 IGPGSIVSIAKGVPSRLEIL  103 (116)
T ss_dssp             ECTTEEEEECTTCCEEEEEC
T ss_pred             ECCCCEEEECCCCeEEEEEe
Confidence            99999999999988655544

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.96  E-value=4.3e-05  Score=65.20  Aligned_cols=83  Identities=14%  Similarity=0.051  Sum_probs=64.9

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-----C------CEEEEccCCcEEEeCC--
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-----G------DSWYPVQAGDVLWMAP--  232 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-----~------g~~~~v~~GD~i~~~~--  232 (259)
                      ..|.++-.+....+.+-.+...||..+|.| .|.....++||+|+.....     +      ++...+++||++++++  
T Consensus        66 y~r~lL~~dp~~~~~v~~l~w~PGq~spiH-dH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~  144 (208)
T 2gm6_A           66 YQQMLLHCDSAERFSIVSFVWGPGQRTPIH-DHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTV  144 (208)
T ss_dssp             CEEEEEEECTTSSCEEEEEEECTTCBCCSB-CCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTT
T ss_pred             eeEEEeecCCCCCEEEEEEEeCCCcccCcc-cCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCC
Confidence            455666555445566668999999999975 5555577899999997654     2      3578899999999999  


Q ss_pred             CCceeEEeC-CCccEEEE
Q 025000          233 FVPQWYAAL-GKTRTRYL  249 (259)
Q Consensus       233 ~~~H~~~n~-G~e~~~fi  249 (259)
                      |..|.+.|. ++++..-|
T Consensus       145 g~iH~V~N~~~~~~avsL  162 (208)
T 2gm6_A          145 GDIHRVHNAYDDRVSISI  162 (208)
T ss_dssp             BCCEEEEESCSSSCEEEE
T ss_pred             CCeEEeccCCCCCcEEEE
Confidence            999999999 78877765

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.94  E-value=2.3e-05  Score=64.86  Aligned_cols=56  Identities=14%  Similarity=0.096  Sum_probs=48.4

Q ss_pred             ecCCcccCcceeeccceEEEEEEceEEEEeCC----EEEEccCCcEEEeCCCCceeEEeCC
Q 025000          186 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       186 ~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      -.|++...+| +|..+|.+|+|+|...+.+.+    +.+.+++||++.+|+|++|+-...+
T Consensus        42 ~Gpn~r~d~H-~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           42 GGPNHRTDYH-DDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             CSCBCCCCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             cCCCcCccCc-CCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccC
Confidence            3466678885 788889999999999988855    5899999999999999999997765

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=97.92  E-value=6.4e-05  Score=63.79  Aligned_cols=79  Identities=16%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             CcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEE-c---C-------CcEEEEeCCcEEEe-CCCCcEEEEeCCe
Q 025000           61 SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTN-A---S-------GVSSKLMVDSYTYL-PPNFAHSLRAEGS  127 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v-~---~-------ge~~~L~~Gd~i~~-p~~~~H~~~N~~~  127 (259)
                      .+|+++++...||..++.|.|+ ...++.||+|+++-+. .   +       +.+.+|.+|+..+| |++.-|++.|.+.
T Consensus        68 ~~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~  147 (200)
T 3eln_A           68 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  147 (200)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCC
Confidence            4799999999999999999776 6899999999998774 1   1       12579999999999 8888999999443


Q ss_pred             EEEEEEEEeccc
Q 025000          128 ATLVVFERRYAS  139 (259)
Q Consensus       128 a~~l~v~~~y~p  139 (259)
                      .+..+..+.|.|
T Consensus       148 ~~~avSlHvY~p  159 (200)
T 3eln_A          148 TEPAVSLHLYSP  159 (200)
T ss_dssp             SCCEEEEEEEES
T ss_pred             CCCEEEEEeCCC
Confidence            333444455654

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.91  E-value=3.3e-05  Score=68.44  Aligned_cols=65  Identities=12%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             ecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           70 MQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        70 l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      +.+|.+... ..+.|..+++|+|+..|++ +|+++.|++||++.||++..|.|...+.+.+|-+...
T Consensus       214 ~G~Ges~~~-~~~~d~wiWqLEGss~Vt~-~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L~I~~~  278 (286)
T 2qnk_A          214 YGQGSSEGL-RQNVDVWLWQLEGSSVVTM-GGRRLSLAPDDSLLVLAGTSYAWERTQGSVALSVTQD  278 (286)
T ss_dssp             ECSEEEEEC-CCSSCEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEEC
T ss_pred             EcCCccccc-cCcCcEEEEEEcCceEEEE-CCeEEeccCCCEEEecCCCeEEEEecCCeEEEEEEEC
Confidence            555544322 2334999999999999999 9999999999999999999999998777777777554

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.89  E-value=2.6e-05  Score=67.99  Aligned_cols=71  Identities=7%  Similarity=0.072  Sum_probs=57.2

Q ss_pred             cceEEEEEEecCCcccCcc-eeeccceEEEEEEceEEEEeCCE---EEEccCCcEEEeCCCCceeEEeC--CCccEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDS---WYPVQAGDVLWMAPFVPQWYAAL--GKTRTRY  248 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~-~~H~~eh~~~il~G~g~~~~~g~---~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~f  248 (259)
                      .++.+++..+.......+. |.|..-+.+||++|+|. .+|++   .+++++||+++++||..|.+...  ++++++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~   81 (276)
T 3gbg_A            5 KSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINV   81 (276)
T ss_dssp             TTEEEEEEEECTTCEEEEEEEECSSCEEEEESSSCEE-EEETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEE
T ss_pred             hhhhhhhhhhhcccchhccHhhhcceEEEEEecCceE-EECCccceeEEEcCCCEEEEcCCCceeeccccCCCcceEE
Confidence            4688888888888775442 34445589999999999 99999   99999999999999999999877  4444443

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=97.81  E-value=0.00018  Score=67.09  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=71.7

Q ss_pred             EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE-EEeccccCCCCccee-------eccCCCCC--CcccC---CceEEEEE
Q 025000          103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-------VGSTDKQP--LLETP---GEVFQLRK  169 (259)
Q Consensus       103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v-~~~y~p~~g~~p~~~-------v~~~~di~--~~~~~---g~~~~~~~  169 (259)
                      ...|++||.+|+|||++|.+-.-.-+++..- .-.|+  .|..|..+       +.++...+  .....   .+. ....
T Consensus       241 ~v~l~pGd~~fipAG~~HAy~~G~~~Eima~SDnv~R--~gltpk~~dv~~ll~vl~~~~~~~~~~~~~~~~~~~-~~~~  317 (394)
T 2wfp_A          241 VVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR--AGLTPKYIDIPELVANVKFEPKPAGELLTAPVKSGA-ELDF  317 (394)
T ss_dssp             EEEECTTCEEEECTTCCEEEEEEEEEEEECSSCBCEE--CSSCSSCCCHHHHHHTCCCCBCCGGGSSCCCEEETT-EEEC
T ss_pred             EEECCCCCEEEcCCCCceEcCCCcEEEEeccCCcEEE--cCCcCCccCHHHHhhhccccCCCccccccccccCCc-eEEE
Confidence            3679999999999999999874112222110 01112  23333322       11111111  00011   111 1111


Q ss_pred             eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCC
Q 025000          170 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV  234 (259)
Q Consensus       170 l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~  234 (259)
                      +.|   ..+|.+.++++.+|.. .  -.+.-..+++|++|+|.+..+++...+++||.+|+++++
T Consensus       318 ~~~---~~~F~v~~~~l~~~~~-~--~~~~~~~il~v~~G~~~l~~~~~~~~l~~G~~~fvpa~~  376 (394)
T 2wfp_A          318 PIP---VDDFAFSLHDLALQET-S--IGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADE  376 (394)
T ss_dssp             CCS---SSSCEEEEEECCSSCE-E--ECCSSCEEEEEEEEEEEEEETTEEEEECTTCEEEECGGG
T ss_pred             eCC---CCEEEEEEEEEcCCeE-E--ecCCCcEEEEEEeceEEEEECCeEEEEccCcEEEEeCCC
Confidence            222   2367788888876532 1  133334899999999999999988999999999999985

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=97.76  E-value=0.00077  Score=63.64  Aligned_cols=64  Identities=17%  Similarity=0.191  Sum_probs=46.4

Q ss_pred             cceEEEEEEec--CCcccCcceeeccceEEEEEEceEEEEeCCE-E--EEccCCcEEEeCCCCceeEEeC
Q 025000          177 FDFNIHIMDFQ--PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS-W--YPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       177 ~~~~~~~~t~~--PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~-~--~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      .+|.+.++++.  +|...-. ....-..+++|++|+|.+..++. .  ..+++||.+|++++..=.+.+.
T Consensus       355 ~eF~v~~~~~~~~~~~~~~~-~~~~~~~illv~~G~g~i~~~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          355 AEFSVLQTIFDKSKGGKQVI-EGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SSCEEEEEECCTTTCCEEEE-CCCSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CeEEEEEEEecCCCCceeEE-ecCCCcEEEEEEeCeEEEEeCCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            36777788887  4532211 12334478999999999998875 4  7999999999999955456665

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.66  E-value=0.00012  Score=60.52  Aligned_cols=53  Identities=13%  Similarity=0.166  Sum_probs=46.0

Q ss_pred             CCcccCcceeeccceEEEEEEceEEEEeCC--------EEEEccCCcEEEeCCCCceeEEeC
Q 025000          188 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--------SWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       188 PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--------~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      |+....+| +|..+|.+|+|+|...+.+.+        +.+.+++||+..+|+|++|+=...
T Consensus        43 Pn~r~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           43 PNERTDYH-INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             SBCCSCEE-ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCcCCcCc-CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCccc
Confidence            44668885 888889999999999988865        489999999999999999999665

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.54  E-value=0.00016  Score=65.36  Aligned_cols=76  Identities=9%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             EEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEE---cCCcEEEEeC-C---cEEEeCCCCcEEEEe--CCeEEEEE-E
Q 025000           65 MYLANMQENARSALP-PHDVERFIFVVQGSAMLTN---ASGVSSKLMV-D---SYTYLPPNFAHSLRA--EGSATLVV-F  133 (259)
Q Consensus        65 ~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v---~~ge~~~L~~-G---d~i~~p~~~~H~~~N--~~~a~~l~-v  133 (259)
                      ....++.||...+.| ++...|.++|++|++.+.+   ..|+.+.+.. |   +.+++|+|..|.+.|  ++++.+++ .
T Consensus       274 ~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~  353 (369)
T 3st7_A          274 VSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWV  353 (369)
T ss_dssp             EEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEE
T ss_pred             EEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEec
Confidence            356778899877777 4567799999999999943   2788899999 8   899999999999999  35565554 4


Q ss_pred             EEecccc
Q 025000          134 ERRYASL  140 (259)
Q Consensus       134 ~~~y~p~  140 (259)
                      ...|.|.
T Consensus       354 ~~~y~~~  360 (369)
T 3st7_A          354 NEMFDPN  360 (369)
T ss_dssp             SSCCCSS
T ss_pred             CcccCCC
Confidence            5555553

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=97.38  E-value=0.00036  Score=62.68  Aligned_cols=121  Identities=14%  Similarity=0.062  Sum_probs=67.7

Q ss_pred             EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE-EEeccccCCCCccee-eccCCCCCCcccCCceEEEEEeeCCCCCcceE
Q 025000          103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-VGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN  180 (259)
Q Consensus       103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v-~~~y~p~~g~~p~~~-v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~  180 (259)
                      ...|++||++|+|||++|.+-...-+++..- .-.|.|-+=+....+ +.++...+...... .   ..+.|   ..+|.
T Consensus       159 ~v~l~pGd~~~ipaGt~HA~~~G~~~Eiqa~SD~t~~pr~l~v~~~~~vl~~~~~~~~~~~~-~---~~~~~---~~~F~  231 (300)
T 1zx5_A          159 TFETTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAYFFNENDWEKVKKVLNTKKVEEFEVKG-K---KGMAE---TENFG  231 (300)
T ss_dssp             EEECCTTCEEEECTTCCEEEESEEEEEEEESCCCCEESSTTTHHHHHHHCCCSBCCGGGTBC-B---TTEEE---CSSEE
T ss_pred             eeECCCCCEEEcCCCCceEcCCCCeeeecccCCceeecccCCHHHHHhhccccCCCccccce-e---EEcCC---CCeEE
Confidence            4689999999999999999874112222110 001111110000000 11111111000000 0   00112   23577


Q ss_pred             EEEEEecCCcccCcceeeccc-eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc
Q 025000          181 IHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       181 ~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~  235 (259)
                      +.++++.+...+   .. .-. .++.+++| |.+..+|+..++++||.+|+++++.
T Consensus       232 v~~~~~~~~~~~---~~-~~~~~il~v~~G-~~i~~~~~~~~l~~G~~~~ipa~~~  282 (300)
T 1zx5_A          232 LEVVDVTGTAEI---KT-GGVMNILYAAEG-YFILRGKETADLHRGYSCLVPASTD  282 (300)
T ss_dssp             EEEEEEEEEEEE---EC-CSBCEEEEEEES-CEEEESSSEEEECTTCEEEECTTCC
T ss_pred             EEEEEECCceEE---ec-CCceEEEEEccc-EEEEeCCeEEEEccceEEEEeCCCc
Confidence            777887753332   22 344 78999999 9999999899999999999999885

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.32  E-value=0.0015  Score=55.75  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=61.7

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-----CCE------EEEccCCcEEEeCCC-
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-----GDS------WYPVQAGDVLWMAPF-  233 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-----~g~------~~~v~~GD~i~~~~~-  233 (259)
                      ..|.|+-.+....+.+-.+...||..+|. |-|...-.+.||+|+-....     +|.      ...+++||++++.|+ 
T Consensus        60 y~r~lL~~dp~~~f~v~~l~W~PGq~spi-HDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~  138 (211)
T 3uss_A           60 YQQYLLHVDSRQRFSVVSFVWGPGQITPV-HDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRI  138 (211)
T ss_dssp             CEEEEEEECTTSSCEEEEEEECTTCBCCS-BCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTT
T ss_pred             eeEEEEecCCCCCEEEEEEEECCCCcCCC-CCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCC
Confidence            34567765555566677999999999997 55555466899999987643     333      478999999999998 


Q ss_pred             -CceeEEeC-CCccEE
Q 025000          234 -VPQWYAAL-GKTRTR  247 (259)
Q Consensus       234 -~~H~~~n~-G~e~~~  247 (259)
                       .-|.+.|. ++++..
T Consensus       139 g~IH~V~N~~~d~~av  154 (211)
T 3uss_A          139 GDVHQVSNAFSDRTSI  154 (211)
T ss_dssp             BCCEEEEESCSSSCEE
T ss_pred             CCEEEEccCCCCCCEE
Confidence             89999998 467643

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.32  E-value=0.0012  Score=52.60  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             ceEEEEEEecCCcc---cCcceeeccc-eEEEEEEceEEEEeC--------CEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          178 DFNIHIMDFQPGDF---LNVKEVHYNQ-HGLLLLEGQGIYRLG--------DSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       178 ~~~~~~~t~~PG~~---~~~~~~H~~e-h~~~il~G~g~~~~~--------g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      .+.+.+..+.|...   +..-|.|..+ |.+++|+|+.++.+.        +....+++|+++.+|.|+.|--.+.  ++
T Consensus        24 ~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~--~e  101 (140)
T 3d0j_A           24 KWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQ--KD  101 (140)
T ss_dssp             SEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEEC--TT
T ss_pred             CEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCC--Cc
Confidence            35667888888744   3345666655 889999999999888        4479999999999999999998874  45


Q ss_pred             EEEEEEeecC
Q 025000          246 TRYLLYKDVN  255 (259)
Q Consensus       246 ~~fi~~k~~n  255 (259)
                      ++.|+.-+-|
T Consensus       102 ~~vLLiEp~n  111 (140)
T 3d0j_A          102 TKMMYVQDSN  111 (140)
T ss_dssp             CEEEEEEESC
T ss_pred             eEEEEEEeCC
Confidence            6666665544

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.24  E-value=0.00059  Score=59.23  Aligned_cols=71  Identities=13%  Similarity=0.046  Sum_probs=57.5

Q ss_pred             cEEEEEEEecCCCcC--CCCCCCceEEEEEEECEEEEEEcCCc---EEEEeCCcEEEeCCCCcEEEEeC----CeEEEEE
Q 025000           62 HFVMYLANMQENARS--ALPPHDVERFIFVVQGSAMLTNASGV---SSKLMVDSYTYLPPNFAHSLRAE----GSATLVV  132 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~--~~h~~~~Eef~yVl~G~l~v~v~~ge---~~~L~~Gd~i~~p~~~~H~~~N~----~~a~~l~  132 (259)
                      .|-+-+..+......  ..|.|+.=+++||++|+++ .+ +++   ++.+.+||.+++|||..|.+...    ++.+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~i-~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~~   83 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LI-DKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSV   83 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEECSSCEEEEESSSCEE-EE-ETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEEEE
T ss_pred             hhhhhhhhhhcccchhccHhhhcceEEEEEecCceE-EE-CCccceeEEEcCCCEEEEcCCCceeeccccCCCcceEEEE
Confidence            577777777666544  3456788899999999999 99 899   99999999999999999999864    5566665


Q ss_pred             EE
Q 025000          133 FE  134 (259)
Q Consensus       133 v~  134 (259)
                      +.
T Consensus        84 i~   85 (276)
T 3gbg_A           84 IT   85 (276)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=97.16  E-value=0.0017  Score=54.89  Aligned_cols=80  Identities=18%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe-----C-------CEEEEccCCcEEEe-C
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL-----G-------DSWYPVQAGDVLWM-A  231 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~-----~-------g~~~~v~~GD~i~~-~  231 (259)
                      ..|.|+-+ ....+.+-.+...||..+|. |-|... -.++||+|+.....     +       +....+++||+.++ +
T Consensus        58 y~R~ll~~-~~~~~~l~ll~W~PGq~Spi-HDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~  135 (200)
T 3eln_A           58 YTRNLVDQ-GNGKFNLMILCWGEGHGSSI-HDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYIND  135 (200)
T ss_dssp             CEEEEEEC-GGGTCEEEEEEECTTCBCCE-ECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECT
T ss_pred             eEEEeeec-CCCceEEEEEEECCCCcCCC-ccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecC
Confidence            45666543 22335555789999999997 666644 55899999998763     2       23678899999999 7


Q ss_pred             CCCceeEEeCC-CccEE
Q 025000          232 PFVPQWYAALG-KTRTR  247 (259)
Q Consensus       232 ~~~~H~~~n~G-~e~~~  247 (259)
                      ++.-|.+.|.+ +++..
T Consensus       136 ~~giH~V~N~s~~~~av  152 (200)
T 3eln_A          136 SIGLHRVENVSHTEPAV  152 (200)
T ss_dssp             TTCEEEEECCCSSCCEE
T ss_pred             CCcEEEEECCCCCCCEE
Confidence            77789999999 56543

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.04  E-value=0.0031  Score=50.47  Aligned_cols=80  Identities=14%  Similarity=0.075  Sum_probs=63.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC----EEEEccCCcE-EEeCCCCceeEEeCCCccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGDV-LWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g----~~~~v~~GD~-i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      .+.+-....+||..-+.|-|...++.+++++|...+.+++    +.+.+...+. +++||+++|++.+.++. ++.+..|
T Consensus        34 kRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~-avllvla  112 (141)
T 2pa7_A           34 KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLA  112 (141)
T ss_dssp             CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEE
T ss_pred             cEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCC-eEEEEEC
Confidence            5666677778999999866666778899999999988875    3455555554 99999999999999875 8888888


Q ss_pred             ecCCCC
Q 025000          253 DVNRNP  258 (259)
Q Consensus       253 ~~nr~~  258 (259)
                      +-.-|+
T Consensus       113 s~~Yd~  118 (141)
T 2pa7_A          113 SDYYDE  118 (141)
T ss_dssp             SSCCCG
T ss_pred             CCCcCH
Confidence            765443

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=96.91  E-value=0.0022  Score=51.36  Aligned_cols=74  Identities=15%  Similarity=0.317  Sum_probs=53.1

Q ss_pred             EEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEEeCCcE-EEeCCCCcEEEEe-CCeEEEEEE-EEecc
Q 025000           66 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKLMVDSY-TYLPPNFAHSLRA-EGSATLVVF-ERRYA  138 (259)
Q Consensus        66 ~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd~-i~~p~~~~H~~~N-~~~a~~l~v-~~~y~  138 (259)
                      +....+||..-+.| +...++++++++|.+++.+.+|   +++.|..... +++|+++-|.+.+ +..+.++++ ..+|.
T Consensus        38 ~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~avllvlas~~Yd  117 (141)
T 2pa7_A           38 YIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYD  117 (141)
T ss_dssp             EEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCCC
T ss_pred             EEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCCeEEEEECCCCcC
Confidence            34445577666677 4457899999999999999444   3577877666 8999999999999 445666655 33444


Q ss_pred             c
Q 025000          139 S  139 (259)
Q Consensus       139 p  139 (259)
                      |
T Consensus       118 ~  118 (141)
T 2pa7_A          118 E  118 (141)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=96.70  E-value=0.017  Score=51.10  Aligned_cols=88  Identities=11%  Similarity=0.016  Sum_probs=70.0

Q ss_pred             CCceEEEEEeeCC-CC---CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCC-
Q 025000          161 PGEVFQLRKLLPQ-AV---PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFV-  234 (259)
Q Consensus       161 ~g~~~~~~~l~p~-~~---~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~-  234 (259)
                      +|.++.++.++|. +.   +.-..+.- ...||.-.|.|.|.++|=.-|+|+|+....+. |..-.+++||+-||.+|- 
T Consensus        18 ~G~g~~v~R~~~~~~~~~~gpf~~ld~-~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~DS~Gn~~~i~~GdvQwMtAG~G   96 (277)
T 2p17_A           18 NSPIHRSGSVLEPGNWQEYDPFLLLME-DIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQWMTAGRG   96 (277)
T ss_dssp             EETTEEEEEEECSSCHHHHTTEEEEEE-EEECTTCCCCEEECSEEEEEEEEESCEEEEETTTEEEEECTTCEEEEECTTC
T ss_pred             cCCCeEEeecCCcccccccCCEEEEec-CCCCCCCCCCCCCCCcEEEEEEEEeEEEEeeCCCCceEECCCeEEEEeCCCC
Confidence            4656677777764 32   33345566 77899889988888887788999999999998 788999999999998765 


Q ss_pred             -ceeEEeCCCccEEEE
Q 025000          235 -PQWYAALGKTRTRYL  249 (259)
Q Consensus       235 -~H~~~n~G~e~~~fi  249 (259)
                       .|+=.|..++++.+|
T Consensus        97 I~HsE~~~~~~~~~~l  112 (277)
T 2p17_A           97 VVHKEDPASGSTVHSL  112 (277)
T ss_dssp             EEEEEEECTTCCEEEE
T ss_pred             EEEEeecCCCCCEEEE
Confidence             499999887888876

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=96.65  E-value=0.012  Score=52.36  Aligned_cols=89  Identities=11%  Similarity=-0.071  Sum_probs=71.3

Q ss_pred             CCceEEEEEeeCC-C-C--CcceEEEEEEecCCcccCcceeeccceEEEEE-EceEEEEeC-CEEEEccCCcEEEeCCCC
Q 025000          161 PGEVFQLRKLLPQ-A-V--PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLL-EGQGIYRLG-DSWYPVQAGDVLWMAPFV  234 (259)
Q Consensus       161 ~g~~~~~~~l~p~-~-~--~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il-~G~g~~~~~-g~~~~v~~GD~i~~~~~~  234 (259)
                      +|.++.++.++|. + .  +.-..+.-+.+.|+.-.|.|.|.++|=.-|+| +|+....+. |..-.+++||+-||.+|-
T Consensus        18 ~G~G~~v~R~~~~~~~~~~gpf~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn~~~i~~GdvQwMtAG~   97 (290)
T 1j1l_A           18 EGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGR   97 (290)
T ss_dssp             ETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECTT
T ss_pred             cCCCeEEEEeCCCccccccCcEEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEeeCCCCceEECCCcEEEEeCCC
Confidence            3556777777753 2 2  33467889999999878887777887778999 999999998 788999999999998765


Q ss_pred             --ceeEEeCCCccEEEE
Q 025000          235 --PQWYAALGKTRTRYL  249 (259)
Q Consensus       235 --~H~~~n~G~e~~~fi  249 (259)
                        .|+=.|..++++.+|
T Consensus        98 GI~HsE~~~~~~~~~~l  114 (290)
T 1j1l_A           98 GILHAEMPCSEEPAHGL  114 (290)
T ss_dssp             CEEEEEEECSSSCEEEE
T ss_pred             CEEEEeEcCCCCCEEEE
Confidence              499999877888876

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.60  E-value=0.017  Score=47.79  Aligned_cols=70  Identities=19%  Similarity=0.037  Sum_probs=54.5

Q ss_pred             EEecCCcccCcceeeccceEEEEEEceEEEEeCC---------EEE--Ecc---CCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          184 MDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---------SWY--PVQ---AGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       184 ~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g---------~~~--~v~---~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      ..-.||..=+.|-|+.+...+.|++|+....+.|         +|.  .+.   ..-.+|+|+|+.|+|.|.++++++++
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~l  137 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVA  137 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEE
Confidence            3447898888877777778899999999887732         233  344   45689999999999999998788777


Q ss_pred             EEee
Q 025000          250 LYKD  253 (259)
Q Consensus       250 ~~k~  253 (259)
                      |..+
T Consensus       138 y~~s  141 (174)
T 3ejk_A          138 NCTD  141 (174)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            7654

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=96.04  E-value=0.031  Score=41.53  Aligned_cols=63  Identities=11%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      +-.|.||.-. . .-+..|..-|++|++++.+ .|  ++.+.++|+++.+|++....++..+++..++
T Consensus        27 vGVm~pGeyt-F-~T~~~E~M~vvsG~~~V~l-pg~~ew~~~~aGesF~Vpans~F~l~v~~~~~YlC   91 (94)
T 2oyz_A           27 VGVMLPGEYT-F-GTQAPERMTVVKGALVVKR-VGEADWTTYSSGESFDVEGNSSFELQVKDATAYLC   91 (94)
T ss_dssp             EEEECSEEEE-E-EESSCEEEEEEESEEEEEE-TTCSSCEEEETTCEEEECSSEEEEEEESSCEEEEE
T ss_pred             EEEEeceEEE-E-cCCCeEEEEEEEeEEEEEc-CCCCcCEEECCCCEEEECCCCEEEEEEcccEeEEE
Confidence            3345677422 1 1235788899999999999 44  5789999999999999999999866555443

>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17

Probab=95.71  E-value=0.36  Score=40.60  Aligned_cols=144  Identities=13%  Similarity=0.046  Sum_probs=88.6

Q ss_pred             eEEEEecCCCC--CcEEEE--EEEecCCCcCCC-CCCCceEEEEEEECE-EEEEEcCCcEEEE-eCCcEEEeCCCCcEEE
Q 025000           50 LGAYLITPAMG--SHFVMY--LANMQENARSAL-PPHDVERFIFVVQGS-AMLTNASGVSSKL-MVDSYTYLPPNFAHSL  122 (259)
Q Consensus        50 ~~~~l~sp~~g--~~f~~~--~~~l~Pg~~~~~-h~~~~Eef~yVl~G~-l~v~v~~ge~~~L-~~Gd~i~~p~~~~H~~  122 (259)
                      ..+.++.|.-.  ..|...  ..+++-.  .+. ...+.+..+.+|+|+ +++.. +++...| ++.+-+.|+.+.+-.-
T Consensus        25 ~TrEI~~P~~~~~~~F~wRiSiA~V~~~--g~FS~FpGidR~i~lL~G~g~~L~~-~~~~~~L~~~~~p~~F~G~~~v~a  101 (200)
T 1yll_A           25 STEEIARDGGDGLDGFGWRLSIADVGES--GGFSGFAGYQRIISVLEGGGMRLRV-DGAESAPLRARQAFAFSGDSEVHC  101 (200)
T ss_dssp             EEEEEEESSCSGGGSCSEEEEEEEECSC--EEECCCTTCEEEEEEEESSCEEEEE-TTEECCCBCBTCCEEEETTSCEEE
T ss_pred             eEEEEEecCCCCcCCceEEEEEEEeccC--CCCCCCCCccEEEEEEeCCcEEEec-CCCccccCCCCCcEEeCCCCcEEE
Confidence            33444466432  345544  4444442  222 247999999999998 99998 7765337 8999999998888777


Q ss_pred             Ee-CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccc
Q 025000          123 RA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQ  201 (259)
Q Consensus       123 ~N-~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~e  201 (259)
                      +. +++++-+-++.+  +  +.    .               ....+++.-.        ...++.+.+         ..
T Consensus       102 ~L~~G~~~DfNlM~r--r--~~----~---------------~~~v~~~~~~--------~~~~~~~~~---------~~  141 (200)
T 1yll_A          102 TLLDGAIRDFNLIYA--P--RR----H---------------RARLQWLRVE--------GELDWHGTA---------ST  141 (200)
T ss_dssp             EESSSCEEEEEEEEC--T--TT----E---------------EEEEEEEEEE--------EEEEEEECC---------SE
T ss_pred             EECCCCEEEEEEEEc--C--Cc----c---------------EEEEEEEecC--------CCeeEcCCC---------CE
Confidence            75 677777766533  2  10    0               0011111000        000011111         11


Q ss_pred             eEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCce
Q 025000          202 HGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       202 h~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H  236 (259)
                      -.+|+|+|+-.+.++ ++...+.+||.+++......
T Consensus       142 ~~v~~l~G~~~v~~~~~~~~~L~~~d~l~~~~~~~~  177 (200)
T 1yll_A          142 LLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGL  177 (200)
T ss_dssp             EEEEESSSCEEEEETTEEEEEECTTCEEEEESCCSC
T ss_pred             EEEEEccCcEEEEcCCCceeecCCCCEEEEeCCCcc
Confidence            358999999999877 68899999999999877644

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=95.66  E-value=0.07  Score=40.72  Aligned_cols=64  Identities=13%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             EEEecCCCcC-CCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           67 LANMQENARS-ALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        67 ~~~l~Pg~~~-~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      +-.|.||... .. .-+..|..-|++|++++.+ .|  ++.+..+|+++.+|++....++..+++..++
T Consensus        41 lGVm~PGe~~YtF-~T~~~E~MevvsG~l~V~L-pg~~eW~~~~aGesF~VpanssF~lkv~~~~~Y~C  107 (111)
T 3hqx_A           41 LGVILPTEQPLTF-ETHVPERMEIISGECRVKI-ADSTESELFRAGQSFYVPGNSLFKIETDEVLDYVC  107 (111)
T ss_dssp             EEEECCCSSCEEE-ECSSCEEEEEEESEEEEEE-TTCSSCEEEETTCEEEECTTCEEEEECSSCEEEEE
T ss_pred             EEEEeccccceEE-cCCCcEEEEEEEeEEEEEc-CCcccCEEeCCCCEEEECCCCcEEEEECcceeEEE
Confidence            3456788411 11 2345788899999999999 44  6789999999999999999999866555554

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=95.56  E-value=0.055  Score=47.71  Aligned_cols=83  Identities=12%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             EEEeeCCCCCc-ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEc--cC--------CcEEEeCCCCc
Q 025000          167 LRKLLPQAVPF-DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV--QA--------GDVLWMAPFVP  235 (259)
Q Consensus       167 ~~~l~p~~~~~-~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v--~~--------GD~i~~~~~~~  235 (259)
                      ++.+.|+..++ -+.|+++.|++|.+... .....|=++..|+|++.+..+|+.++.  +.        .|++|++.|..
T Consensus        16 ~~~itp~~a~~~y~~f~~~~L~~Ge~~~~-~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~   94 (270)
T 2qjv_A           16 IQHISPQNAGWEYVGFDVWQLXAGESITL-PSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTE   94 (270)
T ss_dssp             EEEECHHHHTSSSCEEEEEEECTTCEEEE-CCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCC
T ss_pred             EEEeCCCCCCcEEeEEEEEEecCCCEEEe-cCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCE
Confidence            44455665454 47899999999998764 455566678889999999999998877  23        59999999997


Q ss_pred             eeEEeCCCccEEEEEEe
Q 025000          236 QWYAALGKTRTRYLLYK  252 (259)
Q Consensus       236 H~~~n~G~e~~~fi~~k  252 (259)
                      =.|.+..  +++|.+..
T Consensus        95 v~i~a~~--~~~~~v~s  109 (270)
T 2qjv_A           95 AXVTAET--DLELAVCS  109 (270)
T ss_dssp             EEEEESS--SEEEEEEE
T ss_pred             EEEEecC--CceEEEEe
Confidence            7777765  56665543

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=95.35  E-value=0.094  Score=43.23  Aligned_cols=73  Identities=12%  Similarity=0.039  Sum_probs=51.3

Q ss_pred             EEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCC----------cEEEEe---CCcEEEeCCCCcEEEEe-CC-eEEEE
Q 025000           68 ANMQENARSALP-PHDVERFIFVVQGSAMLTNASG----------VSSKLM---VDSYTYLPPNFAHSLRA-EG-SATLV  131 (259)
Q Consensus        68 ~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~g----------e~~~L~---~Gd~i~~p~~~~H~~~N-~~-~a~~l  131 (259)
                      ....||.--+.| +....++++|++|++...+.|.          +.+.|.   ..-.+|+|+|..|.+.| .. .+.++
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~l  137 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVA  137 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEE
Confidence            344566544666 3457899999999998877232          356788   56789999999999999 33 56655


Q ss_pred             EE-EEecccc
Q 025000          132 VF-ERRYASL  140 (259)
Q Consensus       132 ~v-~~~y~p~  140 (259)
                      +. ...|.|.
T Consensus       138 y~~s~~Y~p~  147 (174)
T 3ejk_A          138 NCTDIPHRQG  147 (174)
T ss_dssp             EEESSCCCTT
T ss_pred             EECCCccCCC
Confidence            44 4556653

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=95.30  E-value=0.21  Score=43.11  Aligned_cols=81  Identities=10%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEc-------------------eEEEEeCCEEEEcc--------CCcEEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEG-------------------QGIYRLGDSWYPVQ--------AGDVLW  229 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G-------------------~g~~~~~g~~~~v~--------~GD~i~  229 (259)
                      +.++--++.+.||...|.|-|..-+|.+...-|                   ...+..||.++.+.        ||.-|-
T Consensus       104 k~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiT  183 (246)
T 3kmh_A          104 KCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESIC  183 (246)
T ss_dssp             CCEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEE
T ss_pred             CcceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEe
Confidence            578888999999999999777677788877776                   44566677666664        555567


Q ss_pred             eCCCCceeEEeCCC-ccEEEEEEeecCCC
Q 025000          230 MAPFVPQWYAALGK-TRTRYLLYKDVNRN  257 (259)
Q Consensus       230 ~~~~~~H~~~n~G~-e~~~fi~~k~~nr~  257 (259)
                      ++||..|+|++.+. .++..-=.--||.|
T Consensus       184 l~Pg~~H~F~ae~g~G~vligEVSt~NDD  212 (246)
T 3kmh_A          184 LPPGLYHSFWAEAGFGDVLVGEVSSVNDD  212 (246)
T ss_dssp             ECTTEEEEEEECTTSCCEEEEEEEECCCT
T ss_pred             cCCCCEEEEEecCCCccEEEEEcccCcCC
Confidence            77777799999876 35666556666665

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=95.23  E-value=0.083  Score=44.41  Aligned_cols=76  Identities=16%  Similarity=0.078  Sum_probs=59.3

Q ss_pred             EEEEEEecCCcccCcceeeccc-----eEEEEEEc-eEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          180 NIHIMDFQPGDFLNVKEVHYNQ-----HGLLLLEG-QGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       180 ~~~~~t~~PG~~~~~~~~H~~e-----h~~~il~G-~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      .+....|.||+.|+. |.....     |.-++.-. ...++++|+.+.-++|.++++..-..|+..|.|++ -+.+++=|
T Consensus       103 ~a~fs~L~pG~~I~p-H~g~~n~~lR~HL~L~~p~~~~~i~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~-~RvvL~~D  180 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWP-HTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASS-FRLIFIVD  180 (197)
T ss_dssp             EEEEEEECTTEEEEE-ECCSCTTEEEEEEEEECCSSSEEEEETTEEECCCBTCEEEECTTSCEEEEECSSS-CEEEEEEE
T ss_pred             eEEEEEeCCCCCcCC-eeCCCCCeEEEEEEEEeCCCCcEEEECCEEEEeeCCcEEEEcCCeEEEEEECCCC-CEEEEEEe
Confidence            466788899999975 444332     33344433 68899999999999999999999999999999987 67777777


Q ss_pred             cCCC
Q 025000          254 VNRN  257 (259)
Q Consensus       254 ~nr~  257 (259)
                      |-|-
T Consensus       181 ~~rP  184 (197)
T 3rcq_A          181 VWHP  184 (197)
T ss_dssp             EECT
T ss_pred             eeCC
Confidence            7664

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=95.01  E-value=0.098  Score=43.98  Aligned_cols=75  Identities=8%  Similarity=0.037  Sum_probs=58.6

Q ss_pred             EEEEEEecCCCcCCCCC---CCceEEEEEEE--C-EEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000           64 VMYLANMQENARSALPP---HDVERFIFVVQ--G-SAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  136 (259)
Q Consensus        64 ~~~~~~l~Pg~~~~~h~---~~~Eef~yVl~--G-~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~  136 (259)
                      ..+...|.||+...+|.   ...=.+-+.|.  . .+.+.+ +|+++..++|.+++|.....|...| ....|++++...
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V-~~~~~~w~eGe~~~fDds~~Hev~N~~d~~RvvL~~D~  181 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRC-ANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDV  181 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEEEE-TTEEECCCBTCEEEECTTSCEEEEECSSSCEEEEEEEE
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEEEE-CCEEEEeeCCcEEEEcCCeEEEEEECCCCCEEEEEEee
Confidence            56788899998877763   34344444443  3 688999 9999999999999999999999999 446788888776


Q ss_pred             ccc
Q 025000          137 YAS  139 (259)
Q Consensus       137 y~p  139 (259)
                      ..|
T Consensus       182 ~rP  184 (197)
T 3rcq_A          182 WHP  184 (197)
T ss_dssp             ECT
T ss_pred             eCC
Confidence            665

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=94.97  E-value=0.078  Score=40.15  Aligned_cols=63  Identities=19%  Similarity=0.240  Sum_probs=46.9

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      +-.|.||.- .. .-+..|..-|++|++++.+ .|  ++.+.++|+++.+|++....++..+++..++
T Consensus        40 lGVm~PGeY-~F-~T~~~E~MevvsG~l~V~L-pG~~eW~~~~aGesF~VpanssF~lkv~~~t~Y~C  104 (106)
T 3eo6_A           40 LTLLHPGVY-TL-SSEVAETIRVLSGMAYYHA-EGANDVQELHAGDSMVIPANQSYRLEVMEPLDYLL  104 (106)
T ss_dssp             EEEECSEEE-EE-CCSSCEEEEEEEEEEEEEC-TTCSSCEEEETTCEEEECSSSCEEEEEEEEEEEEE
T ss_pred             EEEEeeeEE-Ee-cCCCcEEEEEEEeEEEEEC-CCCccCEEECCCCEEEECCCCcEEEEECceEEEEE
Confidence            344567732 22 1245788899999999999 44  6789999999999999999998755544443

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=94.96  E-value=0.24  Score=40.63  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=53.2

Q ss_pred             CcceEEEEEEecCCcccCcceeeccceEEEEEEceE-EEEe---CCEEEE------ccCCcE--EEeCCCCceeEEeC-C
Q 025000          176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG-IYRL---GDSWYP------VQAGDV--LWMAPFVPQWYAAL-G  242 (259)
Q Consensus       176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g-~~~~---~g~~~~------v~~GD~--i~~~~~~~H~~~n~-G  242 (259)
                      +.....-.+.|.+|..+.. |...-.|+.+...|.+ .+.+   ||+...      +.+|+.  +++|+|+.|+.+++ |
T Consensus        46 R~~~T~IYfLL~~g~~S~~-HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g  124 (170)
T 1yud_A           46 RQLWSSIYFLLRTGEVSHF-HRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQD  124 (170)
T ss_dssp             SBSCEEEEEEEETTCCEEE-EECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEESSS
T ss_pred             CccceEEEEEECCCCCCee-EEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEECCC
Confidence            3445555778899998776 5556679999999998 6666   777766      889999  99999999999998 5

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=94.92  E-value=0.2  Score=47.19  Aligned_cols=72  Identities=8%  Similarity=0.007  Sum_probs=55.5

Q ss_pred             cEEEEEEEecCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           62 HFVMYLANMQENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      ++.+.+.  .++.+....   ..++|+++|+-+|++.+.. +=-...+++||++.||.|+.+++.-.+++|.++++.-
T Consensus       156 G~aI~~y--~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRGi~frv~l~~p~Rgyi~E~~  230 (471)
T 1eyb_A          156 GLAIHIF--LCNTSMENRCFYNSDGDFLIVPQKGNLLIYT-EFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEVY  230 (471)
T ss_dssp             CEEEEEE--EECSCCCSEEEEESSEEEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEEEE
T ss_pred             ceEEEEE--eCCCCcccceeecCCCCEEEEEEeCCEEEEE-ecccEEeccCCEEEECCccEEEEeeCCCceEEEEEcc
Confidence            3444333  345555322   4789999999999999998 6556789999999999999999986448999988643

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=94.75  E-value=0.035  Score=49.45  Aligned_cols=70  Identities=6%  Similarity=-0.015  Sum_probs=54.7

Q ss_pred             eEEEEEEecCCcccCcceeeccc-----------eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          179 FNIHIMDFQPGDFLNVKEVHYNQ-----------HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~~e-----------h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                      ..+|. .+.||+.|.. |....+           |+=++..=...+.+||+.+..++|.+.|+...++|+..|.|+++=.
T Consensus        92 ~~vRl-rL~PG~~I~~-HrD~~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RI  169 (290)
T 1e5r_A           92 QMARS-RNLKNAIVIP-HRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQ  169 (290)
T ss_dssp             EEEEE-EEEESEEEEE-ECCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCC
T ss_pred             heEEE-EeCCCCEeeC-ccCccccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeE
Confidence            45666 9999999975 444422           3444567778889999999999999999999999999999996644


Q ss_pred             EEE
Q 025000          248 YLL  250 (259)
Q Consensus       248 fi~  250 (259)
                      .|+
T Consensus       170 hLv  172 (290)
T 1e5r_A          170 SLC  172 (290)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=94.73  E-value=0.11  Score=46.57  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=49.4

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCC-cEEEEeCCeEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF-AHSLRAEGSATLVV  132 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~-~H~~~N~~~a~~l~  132 (259)
                      ..|.+.+.++.++...  ...++-.++.|++|++++.. ++++..|++||++++|++. .-++.  +.++++.
T Consensus       249 ~~F~~~~~~~~~~~~~--~~~~~~~il~v~~G~~~l~~-~~~~~~l~~G~~~~vpa~~~~~~i~--g~~~~~~  316 (319)
T 1qwr_A          249 EYFSVYKWDINGEAEM--AQDESFLICSVIEGSGLLKY-EDKTCPLKKGDHFILPAQMPDFTIK--GTCTLIV  316 (319)
T ss_dssp             SSCEEEEEEEEEEEEE--CCCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCCCEEEE--EEEEEEE
T ss_pred             CEEEEEEEEECCceEE--ccCCccEEEEEEcCeEEEEE-CCEEEEEcCCcEEEEeCCCceEEEE--eceEEEE
Confidence            4688888888644322  12356778999999999998 8888999999999999987 44454  3344443

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=94.68  E-value=0.13  Score=48.39  Aligned_cols=65  Identities=12%  Similarity=0.226  Sum_probs=49.1

Q ss_pred             CCcEEEEEEEec--CCCcCCCCCCCceEEEEEEECEEEEEEcCCc-E--EEEeCCcEEEeCCCCcEEEEeC
Q 025000           60 GSHFVMYLANMQ--ENARSALPPHDVERFIFVVQGSAMLTNASGV-S--SKLMVDSYTYLPPNFAHSLRAE  125 (259)
Q Consensus        60 g~~f~~~~~~l~--Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge-~--~~L~~Gd~i~~p~~~~H~~~N~  125 (259)
                      -..|.+.++++.  +++........+-.+++|++|++++.. +++ +  ..|++||++|+|++..-.+.+.
T Consensus       354 ~~eF~v~~~~~~~~~~~~~~~~~~~~~~illv~~G~g~i~~-~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          354 IAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQI-TGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SSSCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEE-TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CCeEEEEEEEecCCCCceeEEecCCCcEEEEEEeCeEEEEe-CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            357999998887  332222223456789999999999998 664 4  7999999999999977777764

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=94.61  E-value=0.084  Score=44.01  Aligned_cols=25  Identities=16%  Similarity=0.208  Sum_probs=23.0

Q ss_pred             EEEccCCcEEEeCCCCceeEEeCCC
Q 025000          219 WYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       219 ~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      +..++|||++|+|+|-.|+..|.+.
T Consensus       202 ~~~l~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          202 SCILSPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             EEEECTTCEEEECTTCEEEEEESSS
T ss_pred             EEEECCCCEEEeCCCCcEEEEECCC
Confidence            5689999999999999999999964

>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0

Probab=94.16  E-value=0.69  Score=38.66  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=67.7

Q ss_pred             EEECCCCceeccCCCCC---cceEEEEecCCCC-CcEEEE--EEEecCCCcCCCC-CCCceEEEEEEECE-EEEEEcCC-
Q 025000           31 ALITPESHVLSPLPEWT---NTLGAYLITPAMG-SHFVMY--LANMQENARSALP-PHDVERFIFVVQGS-AMLTNASG-  101 (259)
Q Consensus        31 avi~pe~~v~~~lp~~~---~~~~~~l~sp~~g-~~f~~~--~~~l~Pg~~~~~h-~~~~Eef~yVl~G~-l~v~v~~g-  101 (259)
                      .+++.++.....   |.   |.+-.+...|..+ .+|...  ..+++-  .++.. ..+.+.++.+|+|+ +++.. +| 
T Consensus        12 ~~i~~~d~~~~p---WkNGgG~TrEI~~~P~~~~~~F~wRiSiA~V~~--~g~FS~FpG~dR~l~lL~G~gl~L~~-~g~   85 (193)
T 3esg_A           12 SVWRAVDYVRMP---WKNGGGSTEEITRDAGTGLEGFGWRLSIADIGE--SGGFSSFAGYQRVITVIQGAGMVLTV-DGE   85 (193)
T ss_dssp             EEECGGGCEEEE---CTTSSEEEEEEEECCCBTTTBCSEEEEEEEECS--SEECCCCTTCEEEEEEEESSCEEEEE-TTS
T ss_pred             EEecHHHCCccc---ccCCCeEEEEEEEcCCCcCCCceEEEEEEEEcC--CCCCCCCCCceEEEEEEcCCcEEEEe-CCC
Confidence            455555555432   54   3354556666543 455544  444443  22222 47999999999997 99998 76 


Q ss_pred             cEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000          102 VSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  136 (259)
Q Consensus       102 e~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~  136 (259)
                      ..+.|.+.+.+.|+.+.+-.-++ +++++-+-++.+
T Consensus        86 ~~~~L~~~~p~~F~G~~~v~a~L~~G~v~DfNlM~r  121 (193)
T 3esg_A           86 EQRGLLPLQPFAFRGDSQVSCRLITGPIRDFNLIYS  121 (193)
T ss_dssp             CCEEECBTCCEEEETTSCEEEEESSSCEEEEEEEEC
T ss_pred             ccEecCCCCCEEeCCCCeEEEEECCCCEEEEEEEEc
Confidence            46889999999999998887776 778877777533

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=94.12  E-value=0.03  Score=49.89  Aligned_cols=74  Identities=15%  Similarity=0.022  Sum_probs=54.8

Q ss_pred             cEEEEEEEecCCCcCCCCCCCce-----------EEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEE
Q 025000           62 HFVMYLANMQENARSALPPHDVE-----------RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSAT  129 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~E-----------ef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~  129 (259)
                      .+.++++.+.||+...+|....+           ++-.+..=.+.+.+ +|+.+.+++|++.||....+|...| ....|
T Consensus        90 ~l~~vRlrL~PG~~I~~HrD~~~l~~~~~~~~RlHIPL~Tnp~~~f~v-dg~~~~m~~GE~w~~d~~~~H~v~N~g~~~R  168 (290)
T 1e5r_A           90 HLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSN-EDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEE-TTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             hhheEEEEeCCCCEeeCccCccccccccCCceEEEeeEecCCCcEEEE-CCEEEecCCCCEEEEcCCCeeEEEcCCCCCe
Confidence            44667679999998877743211           23344455567777 9999999999999999999999999 44578


Q ss_pred             EEEEEEe
Q 025000          130 LVVFERR  136 (259)
Q Consensus       130 ~l~v~~~  136 (259)
                      +.++.--
T Consensus       169 IhLv~D~  175 (290)
T 1e5r_A          169 QSLCVDF  175 (290)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEe
Confidence            7776544

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=93.96  E-value=0.05  Score=39.00  Aligned_cols=38  Identities=13%  Similarity=0.083  Sum_probs=33.4

Q ss_pred             CcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEE
Q 025000           61 SHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTN   98 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v   98 (259)
                      -++.+.++.+.||+...+| +....|++||++|++.+.+
T Consensus        34 lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           34 LDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             TTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEE
T ss_pred             CCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEE
Confidence            4789999999999988888 4568899999999999887

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=93.71  E-value=0.13  Score=47.67  Aligned_cols=61  Identities=13%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCC-cEEEE
Q 025000           60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF-AHSLR  123 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~-~H~~~  123 (259)
                      ...|.+.+.++.++. ... ..++-.++.|++|++++.. ++++..|++||++++|++. .-++.
T Consensus       321 ~~~F~v~~~~l~~~~-~~~-~~~~~~il~v~~G~~~l~~-~~~~~~l~~G~~~fvpa~~~~~~i~  382 (394)
T 2wfp_A          321 VDDFAFSLHDLALQE-TSI-GQHSAAILFCVEGEAVLRK-DEQRLVLKPGESAFIGADESPVNAS  382 (394)
T ss_dssp             SSSCEEEEEECCSSC-EEE-CCSSCEEEEEEEEEEEEEE-TTEEEEECTTCEEEECGGGCCEEEE
T ss_pred             CCEEEEEEEEEcCCe-EEe-cCCCcEEEEEEeceEEEEE-CCeEEEEccCcEEEEeCCCceEEEE
Confidence            357888888887542 111 3455689999999999998 8888999999999999984 55554

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=93.61  E-value=0.38  Score=39.92  Aligned_cols=62  Identities=11%  Similarity=0.116  Sum_probs=46.2

Q ss_pred             CCcccCccee--eccceEEEEEEceEE---EEeC------CEEEEcc----CCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          188 PGDFLNVKEV--HYNQHGLLLLEGQGI---YRLG------DSWYPVQ----AGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       188 PG~~~~~~~~--H~~eh~~~il~G~g~---~~~~------g~~~~v~----~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      +|.-=|.|-|  |.+..-+.|++|+..   +.+.      |+|..+.    .+-.+|+|+|+.|+|.|.+++ ++++|
T Consensus        57 ~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (185)
T 1ep0_A           57 RGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNY  133 (185)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            7888787767  678888999999963   3332      2566552    367899999999999999876 55444

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=93.39  E-value=0.24  Score=41.12  Aligned_cols=57  Identities=19%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             ecCCC-cCCCCCCCceEEEEEEECEEEEEEc--C------------------------------------CcEEEEeCCc
Q 025000           70 MQENA-RSALPPHDVERFIFVVQGSAMLTNA--S------------------------------------GVSSKLMVDS  110 (259)
Q Consensus        70 l~Pg~-~~~~h~~~~Eef~yVl~G~l~v~v~--~------------------------------------ge~~~L~~Gd  110 (259)
                      +.|++ .+..|....+-++.++.|+=+..+-  +                                    .-+.+|+|||
T Consensus       130 iG~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD  209 (235)
T 4gjz_A          130 FGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGE  209 (235)
T ss_dssp             EECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTC
T ss_pred             EeCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCC
Confidence            33444 4455666678999999999887761  0                                    0146899999


Q ss_pred             EEEeCCCCcEEEEeCC
Q 025000          111 YTYLPPNFAHSLRAEG  126 (259)
Q Consensus       111 ~i~~p~~~~H~~~N~~  126 (259)
                      .+|+|++--|..+|.+
T Consensus       210 ~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          210 ILFIPVKYWHYVRALD  225 (235)
T ss_dssp             EEEECTTCEEEEEESS
T ss_pred             EEEeCCCCcEEEEECC
Confidence            9999999999999944

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=93.37  E-value=0.32  Score=37.99  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             CCcccCcc---eee-ccceEEEEEEceEEEE-eCC-------EEEEccCCcEEEeCCCCceeEEeCCCccEEE
Q 025000          188 PGDFLNVK---EVH-YNQHGLLLLEGQGIYR-LGD-------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRY  248 (259)
Q Consensus       188 PG~~~~~~---~~H-~~eh~~~il~G~g~~~-~~g-------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f  248 (259)
                      |++....|   -++ +.-..+-||+|+..|+ +++       +..-..+|++.+++|..+|.++...+ ++.|
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f   94 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYF   94 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEE
Confidence            66666655   333 3337899999999888 233       55678999999999999999998655 5554

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=93.35  E-value=0.12  Score=37.03  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             cceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL  215 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~  215 (259)
                      -++.+.+..|.||+-.+. |.|... |+.||++|++.+-+
T Consensus        34 lgls~~r~~l~~gg~~~P-H~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           34 LDILLNCLQMNEGALFVP-HYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             TTEEEEEEEECTTCEEEE-EEESSCEEEEEEEESCEEEEE
T ss_pred             CCcceEEEEEcCCcCcCC-ccCCCCcEEEEEEeceEEEEE
Confidence            478899999999999986 677644 88999999997654

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=93.26  E-value=0.34  Score=43.14  Aligned_cols=58  Identities=9%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCce-EEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCc-EEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVE-RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLR  123 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~E-ef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~-H~~~  123 (259)
                      ..|.+.+.++.+....  .. ++- .++.|++| +++.. +|++..|++|+++++|++.. -++.
T Consensus       228 ~~F~v~~~~~~~~~~~--~~-~~~~~il~v~~G-~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i~  287 (300)
T 1zx5_A          228 ENFGLEVVDVTGTAEI--KT-GGVMNILYAAEG-YFILR-GKETADLHRGYSCLVPASTDSFTVE  287 (300)
T ss_dssp             SSEEEEEEEEEEEEEE--EC-CSBCEEEEEEES-CEEEE-SSSEEEECTTCEEEECTTCCEEEEE
T ss_pred             CeEEEEEEEECCceEE--ec-CCceEEEEEccc-EEEEe-CCeEEEEccceEEEEeCCCceEEEE
Confidence            4688888887642221  12 556 78999999 99998 89999999999999999984 5554

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=93.17  E-value=0.33  Score=35.93  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             ecCCcccCcceeeccceEEEEEEceEEEEeCCE--EEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          186 FQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       186 ~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +.||...   =.-...|.+-|++|...+.+.|+  |...++||...+|.+..=.++..  ++..|||.
T Consensus        30 m~pGeyt---F~T~~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~--~~~~YlC~   92 (94)
T 2oyz_A           30 MLPGEYT---FGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVK--DATAYLCE   92 (94)
T ss_dssp             ECSEEEE---EEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEES--SCEEEEEE
T ss_pred             EeceEEE---EcCCCeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEECCCCEEEEEEc--ccEeEEEE
Confidence            4577642   23345699999999999999985  99999999999999988888876  88999985

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=93.01  E-value=0.38  Score=39.63  Aligned_cols=151  Identities=12%  Similarity=0.018  Sum_probs=85.6

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEE-----eCCCCcEEEEeCCeEEEEEEEEe-ccc
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTY-----LPPNFAHSLRAEGSATLVVFERR-YAS  139 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~-----~p~~~~H~~~N~~~a~~l~v~~~-y~p  139 (259)
                      ...+++|...-......+.+++|++|.+.+.. +|+. ..+++||++=     ...-...+.+..++++++.+.+. |..
T Consensus        32 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~  110 (246)
T 3of1_A           32 EKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-NDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRK  110 (246)
T ss_dssp             EEEECTTCEEECTTCCCCEEEEEEECCEEEES-TTSCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHH
T ss_pred             eEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CCEEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHH
Confidence            45566665442223457899999999999997 6654 6899999873     12222345556777888777432 111


Q ss_pred             cCCCCcceeecc----CCCCCCcccCCceEEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEE
Q 025000          140 LENHITEQIVGS----TDKQPLLETPGEVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR  214 (259)
Q Consensus       140 ~~g~~p~~~v~~----~~di~~~~~~g~~~~~~~l~p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~  214 (259)
                      +-...|..-...    ...++.  +.       .+.+.+.. -...+....+++|..+=. +-......|+|++|+..+.
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~--f~-------~l~~~~l~~l~~~~~~~~~~~g~~i~~-~g~~~~~~y~I~~G~v~v~  180 (246)
T 3of1_A          111 ILLGSSFKKRLMYDDLLKSMPV--LK-------SLTTYDRAKLADALDTKIYQPGETIIR-EGDQGENFYLIEYGAVDVS  180 (246)
T ss_dssp             TTTTTTSHHHHHSHHHHHHCGG--GT-------TCCHHHHHHHHHTCEEEEECTTCEEEC-TTSBCCEEEEEEECEEEEE
T ss_pred             HHHHhHHHHHHHHHHHHhhChh--hh-------cCCHHHHHHHHHhhheEEeCCCCEEEe-CCCcCCEEEEEEecEEEEE
Confidence            111111100000    000000  00       01111111 123345677889988732 3344557899999999988


Q ss_pred             eCC--EEEEccCCcEE
Q 025000          215 LGD--SWYPVQAGDVL  228 (259)
Q Consensus       215 ~~g--~~~~v~~GD~i  228 (259)
                      ..+  ....+.+||++
T Consensus       181 ~~~~~~~~~l~~g~~f  196 (246)
T 3of1_A          181 KKGQGVINKLKDHDYF  196 (246)
T ss_dssp             ETTTEEEEEEETTCEE
T ss_pred             EcCCceEEEcCCCCcc
Confidence            877  46788999976

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=92.98  E-value=0.49  Score=39.18  Aligned_cols=63  Identities=11%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             CCcccCccee--eccceEEEEEEceEE-EEeC--------CEEEEcc--C--CcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          188 PGDFLNVKEV--HYNQHGLLLLEGQGI-YRLG--------DSWYPVQ--A--GDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       188 PG~~~~~~~~--H~~eh~~~il~G~g~-~~~~--------g~~~~v~--~--GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +|.-=|.|-|  +.+...+.|++|+.. +.+|        |+|..+.  +  +-.+|+|+|+.|+|.|.+++ ++++|.
T Consensus        58 ~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           58 RGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             CCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            7887777666  677788999999862 2222        2566553  2  67899999999999999876 555443

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=92.35  E-value=0.76  Score=38.45  Aligned_cols=63  Identities=11%  Similarity=0.161  Sum_probs=44.1

Q ss_pred             cCCcccCcceeec---cceEEEEEEceE-EEEeCC--------EEEEcc----CCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          187 QPGDFLNVKEVHY---NQHGLLLLEGQG-IYRLGD--------SWYPVQ----AGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~H~---~eh~~~il~G~g-~~~~~g--------~~~~v~----~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+|..=+.|-|..   +...+.|++|+. .+.+|.        +|..+.    ..-.+|+|+|+.|+|.|.++ +.+++|
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd-~a~~ly  151 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALED-SIVIYF  151 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSS-EEEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCC-CeEEEE
Confidence            4677666654543   667789999988 444442        355443    46889999999999999987 455543

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=92.26  E-value=0.43  Score=36.03  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEe
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      |++..+-+.-.|... ..  +=.+.||.+   .=.-...|.+-|++|...+.+.|  +|...++|+...+|.+..=.++.
T Consensus        23 GkV~S~~~~~~dG~~-kT--lGVm~PGeY---~F~T~~~E~MevvsG~l~V~LpG~~eW~~~~aGesF~VpanssF~lkv   96 (106)
T 3eo6_A           23 GRRSERSVILADGSM-HS--LTLLHPGVY---TLSSEVAETIRVLSGMAYYHAEGANDVQELHAGDSMVIPANQSYRLEV   96 (106)
T ss_dssp             TTEEEEEEEETTSCE-EE--EEEECSEEE---EECCSSCEEEEEEEEEEEEECTTCSSCEEEETTCEEEECSSSCEEEEE
T ss_pred             CeEEEEEEEeCCCCe-EE--EEEEeeeEE---EecCCCcEEEEEEEeEEEEECCCCccCEEECCCCEEEECCCCcEEEEE
Confidence            455666555333221 11  223457753   22334558999999999999999  79999999999999999988887


Q ss_pred             CCCccEEEEEE
Q 025000          241 LGKTRTRYLLY  251 (259)
Q Consensus       241 ~G~e~~~fi~~  251 (259)
                      .  ++..|+|+
T Consensus        97 ~--~~t~Y~Cs  105 (106)
T 3eo6_A           97 M--EPLDYLLS  105 (106)
T ss_dssp             E--EEEEEEEE
T ss_pred             C--ceEEEEEc
Confidence            6  79999996

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=92.26  E-value=0.42  Score=43.19  Aligned_cols=57  Identities=19%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             EecC-CCcCCCCCCCceEEEEEEECEEEEEEc-C-------------------------------------CcEEEEeCC
Q 025000           69 NMQE-NARSALPPHDVERFIFVVQGSAMLTNA-S-------------------------------------GVSSKLMVD  109 (259)
Q Consensus        69 ~l~P-g~~~~~h~~~~Eef~yVl~G~l~v~v~-~-------------------------------------ge~~~L~~G  109 (259)
                      -+.| |+..+.|....+-|+..+.|+=+..+- .                                     ..+.+|+||
T Consensus       146 ~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pG  225 (342)
T 1vrb_A          146 YAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPG  225 (342)
T ss_dssp             EEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTT
T ss_pred             EEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCC
Confidence            3445 556677877788999999998777662 0                                     135699999


Q ss_pred             cEEEeCCCCcEEEEeC
Q 025000          110 SYTYLPPNFAHSLRAE  125 (259)
Q Consensus       110 d~i~~p~~~~H~~~N~  125 (259)
                      |.+|+|+|-.|..++.
T Consensus       226 D~LyiP~gwwH~v~s~  241 (342)
T 1vrb_A          226 TMLYLPRGLWHSTKSD  241 (342)
T ss_dssp             CEEEECTTCEEEEECS
T ss_pred             cEEEeCCCccEEEEEC
Confidence            9999999999999985

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=92.09  E-value=0.23  Score=36.72  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=29.6

Q ss_pred             EEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          219 WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       219 ~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      .-.|++||++++|.|-+=...|..  .|+||+||=-
T Consensus         7 ~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tn   40 (93)
T 1dgw_Y            7 AATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVN   40 (93)
T ss_dssp             EEEECTTCEEEECTTCCEEEEESS--SEEEEEEEES
T ss_pred             hceecCCcEEEECCCCceeEEecC--CeEEEEEEec
Confidence            457999999999999999999985  4999999743

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=92.05  E-value=0.84  Score=37.73  Aligned_cols=62  Identities=13%  Similarity=0.203  Sum_probs=44.0

Q ss_pred             CCcccCcceee---ccceEEEEEEceEE-EEeC--------CEEEEcc--C--CcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          188 PGDFLNVKEVH---YNQHGLLLLEGQGI-YRLG--------DSWYPVQ--A--GDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       188 PG~~~~~~~~H---~~eh~~~il~G~g~-~~~~--------g~~~~v~--~--GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      +|.-=|.|-|.   .+..-+.|++|+.. +.+|        |+|..+.  +  +-.+|+|+|+.|+|.+.++. .+++|
T Consensus        56 ~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A           56 KNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             TTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            78877776554   56677899999863 2222        3466553  2  57899999999999999876 44433

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=91.38  E-value=2  Score=36.94  Aligned_cols=63  Identities=16%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             CcEEEEEEEecCCCcCCCC-CCCceEEEEEEEC-E------------------EEEEEcCC--------cEEEEeCCcEE
Q 025000           61 SHFVMYLANMQENARSALP-PHDVERFIFVVQG-S------------------AMLTNASG--------VSSKLMVDSYT  112 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G-~------------------l~v~v~~g--------e~~~L~~Gd~i  112 (259)
                      +.++-=++.+.||+..+.| +..-+|-+++--| .                  +++.+ +|        ....|.||+++
T Consensus       104 k~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~-DG~~~~~~aG~~i~L~PGESi  182 (246)
T 3kmh_A          104 KCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVI-DGCRQKHTAGSQLRLSPGESI  182 (246)
T ss_dssp             CCEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEE-TTEEEEECTTCEEEECTTCEE
T ss_pred             CcceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEec-CCeEEEeCCCCEEEECCCCeE
Confidence            4677788889999988888 3456666666665 2                  23333 33        45588999999


Q ss_pred             EeCCCCcEEEEe
Q 025000          113 YLPPNFAHSLRA  124 (259)
Q Consensus       113 ~~p~~~~H~~~N  124 (259)
                      -++||+-|+|..
T Consensus       183 Tl~Pg~~H~F~a  194 (246)
T 3kmh_A          183 CLPPGLYHSFWA  194 (246)
T ss_dssp             EECTTEEEEEEE
T ss_pred             ecCCCCEEEEEe
Confidence            999999999998

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=91.37  E-value=1  Score=35.07  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=43.9

Q ss_pred             CCCcCCCC-----CCCceEEEEEEECEEEEEE-c-CC-----cEEEEeCCcEEEeCCCCcEEEEe-CCeEEE
Q 025000           72 ENARSALP-----PHDVERFIFVVQGSAMLTN-A-SG-----VSSKLMVDSYTYLPPNFAHSLRA-EGSATL  130 (259)
Q Consensus        72 Pg~~~~~h-----~~~~Eef~yVl~G~l~v~v-~-~g-----e~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~  130 (259)
                      |++-.+.|     ..+.-+-+-||+|++++.. . +|     +...+.+|+...+||+..|++.. +.++++
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f   94 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYF   94 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEE
Confidence            55545555     3567788899999998873 1 22     34578999999999999999996 555555

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=91.36  E-value=0.48  Score=39.71  Aligned_cols=73  Identities=11%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             EEEEecCCCcCCCCCCCceEEEEEEE-CEE-EEEEcCC-------c--EEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           66 YLANMQENARSALPPHDVERFIFVVQ-GSA-MLTNASG-------V--SSKLMVDSYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        66 ~~~~l~Pg~~~~~h~~~~Eef~yVl~-G~l-~v~v~~g-------e--~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      +...-.+|.--+.|.|....++.|++ |++ .+.+ |.       +  ...|.++..+|||+|..|.+.+ +..+.+++.
T Consensus        63 n~S~s~~GvlRGlH~h~q~Klv~~~~~G~v~dV~V-DlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~  141 (197)
T 1nxm_A           63 NVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWV-DLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYL  141 (197)
T ss_dssp             EEEEEETTBEEEEEECSSCEEEEECSSCCEEEEEE-ECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             EEEECCCCCcceeeecccceEEEEcCCCEEEEEEE-ECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEE
Confidence            33333455444667567889999999 995 6666 33       3  4688899999999999999999 555666543


Q ss_pred             -EEeccc
Q 025000          134 -ERRYAS  139 (259)
Q Consensus       134 -~~~y~p  139 (259)
                       ...|.|
T Consensus       142 ~s~~Y~p  148 (197)
T 1nxm_A          142 VNDYWAL  148 (197)
T ss_dssp             ESSCCCG
T ss_pred             CCCccCh
Confidence             444554

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=91.26  E-value=0.55  Score=38.92  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=46.4

Q ss_pred             CCCcCCCC-C--CCceEEEEEEECEE-EEEEc-C------Cc--EEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEEE-E
Q 025000           72 ENARSALP-P--HDVERFIFVVQGSA-MLTNA-S------GV--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF-E  134 (259)
Q Consensus        72 Pg~~~~~h-~--~~~Eef~yVl~G~l-~v~v~-~------ge--~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~v-~  134 (259)
                      +|.--+.| +  +...+++.|++|++ .+.++ .      |+  ...|.+  ...+|+|+|..|.|.+ +..+.+++. .
T Consensus        57 ~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s  136 (185)
T 1ep0_A           57 RGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCT  136 (185)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             CCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEecC
Confidence            55444566 3  57789999999996 45541 1      12  356766  5789999999999999 444555543 4


Q ss_pred             Eecccc
Q 025000          135 RRYASL  140 (259)
Q Consensus       135 ~~y~p~  140 (259)
                      ..|.|.
T Consensus       137 ~~Y~p~  142 (185)
T 1ep0_A          137 ELYHPE  142 (185)
T ss_dssp             SCCCGG
T ss_pred             CccChh
Confidence            556553

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=91.20  E-value=0.68  Score=37.92  Aligned_cols=63  Identities=8%  Similarity=0.091  Sum_probs=49.1

Q ss_pred             EEEEEEEecCCCcCCCCCCCceEEEEEEECE-EEEEE--cCCcEEE------EeCCcE--EEeCCCCcEEEEeC
Q 025000           63 FVMYLANMQENARSALPPHDVERFIFVVQGS-AMLTN--ASGVSSK------LMVDSY--TYLPPNFAHSLRAE  125 (259)
Q Consensus        63 f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~-l~v~v--~~ge~~~------L~~Gd~--i~~p~~~~H~~~N~  125 (259)
                      ...++.-|.+|..+..|....+|+.+...|. +++.+  .+|+...      +.+|+.  +++|+|.-+..++.
T Consensus        49 ~T~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~  122 (170)
T 1yud_A           49 WSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMN  122 (170)
T ss_dssp             CEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEES
T ss_pred             ceEEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEEC
Confidence            4556667889987778876799999999998 57766  2455444      567888  99999999999984

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=90.97  E-value=1.6  Score=36.71  Aligned_cols=63  Identities=13%  Similarity=0.108  Sum_probs=44.1

Q ss_pred             cCCcccCcceeec---cceEEEEEEceE-EEEeCC--------EEEEcc--C--CcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          187 QPGDFLNVKEVHY---NQHGLLLLEGQG-IYRLGD--------SWYPVQ--A--GDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~H~---~eh~~~il~G~g-~~~~~g--------~~~~v~--~--GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+|.-=+.|-|..   +...+.|++|+. .+.+|.        +|..+.  +  +-.+|+|+|+.|+|.+.+++ .+++|
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            4777767655543   677889999986 344442        355543  3  57899999999999999876 44443

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=90.90  E-value=0.56  Score=44.62  Aligned_cols=59  Identities=15%  Similarity=0.252  Sum_probs=41.2

Q ss_pred             ecCCcccCcceeeccceEEEEEEceE--EEEeCC-------------------------EEEEccCCcEEEeCCCCceeE
Q 025000          186 FQPGDFLNVKEVHYNQHGLLLLEGQG--IYRLGD-------------------------SWYPVQAGDVLWMAPFVPQWY  238 (259)
Q Consensus       186 ~~PG~~~~~~~~H~~eh~~~il~G~g--~~~~~g-------------------------~~~~v~~GD~i~~~~~~~H~~  238 (259)
                      +.|+++.+. --|...+..+++++.|  ..++-.                         ....++|||++|+|+|.+|+.
T Consensus       170 ~tp~Gs~g~-~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~  248 (489)
T 4diq_A          170 LTPPNSQGF-APHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQA  248 (489)
T ss_dssp             EECSSBCCS-CCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEE
T ss_pred             ecCCCcccc-cCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEE
Confidence            346666554 3455556677777777  222211                         367899999999999999999


Q ss_pred             EeCCCcc
Q 025000          239 AALGKTR  245 (259)
Q Consensus       239 ~n~G~e~  245 (259)
                      .+.+++.
T Consensus       249 ~s~~~~~  255 (489)
T 4diq_A          249 ECQDGVH  255 (489)
T ss_dssp             EBCSSCC
T ss_pred             EecCCCc
Confidence            9997543

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=90.81  E-value=2.7  Score=36.80  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=54.3

Q ss_pred             EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc-eeEEeCCCcc
Q 025000          167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP-QWYAALGKTR  245 (259)
Q Consensus       167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~-H~~~n~G~e~  245 (259)
                      +|.|.-.+.+..-.  ++.|.||=..|. --|...-++|||+|+..+  +|  ..+.+|+++|+|.|+. =.++-.|+++
T Consensus        81 ~RlLs~~d~GaSTl--~V~fpp~~~~P~-Gi~~ad~E~fVL~G~i~~--G~--~~l~~h~Y~f~PaGV~~~~~kv~~~~g  153 (303)
T 2qdr_A           81 RRLLTWHDSGASTS--RVVLPPKFEAPS-GIFTADLEIFVIKGAIQL--GE--WQLNKHSYSFIPAGVRIGSWKVLGGEE  153 (303)
T ss_dssp             EEEEEECTTSCEEE--EEEECTTCEECC-BEESSCEEEEEEESEEEE--TT--EEECTTEEEEECTTCCBCCEEEETTSC
T ss_pred             eeecccCCCCcceE--EEEecCCCCCCC-cccccceEEEEEEeEEEe--CC--EEecCCceEEecCCCccCceeecCCCC
Confidence            34444343343322  567889988886 455555449999987654  55  4578999999999997 4455558888


Q ss_pred             EEEEEE
Q 025000          246 TRYLLY  251 (259)
Q Consensus       246 ~~fi~~  251 (259)
                      .+-|.|
T Consensus       154 ~~iL~f  159 (303)
T 2qdr_A          154 AEILWM  159 (303)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            888887

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=90.81  E-value=1.3  Score=39.94  Aligned_cols=32  Identities=9%  Similarity=0.002  Sum_probs=26.3

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      ....++|||++|+|+|.+|...+.++++..-+
T Consensus       218 ~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsv  249 (342)
T 1vrb_A          218 EIVNLTPGTMLYLPRGLWHSTKSDQATLALNI  249 (342)
T ss_dssp             EEEEECTTCEEEECTTCEEEEECSSCEEEEEE
T ss_pred             eEEEECCCcEEEeCCCccEEEEECCCCceEEE
Confidence            56789999999999999999999975444333

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=90.54  E-value=0.71  Score=38.20  Aligned_cols=68  Identities=13%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             CCCcCCCC-C--CCceEEEEEEECEE-EEEEcCC--------c--EEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEEE-
Q 025000           72 ENARSALP-P--HDVERFIFVVQGSA-MLTNASG--------V--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF-  133 (259)
Q Consensus        72 Pg~~~~~h-~--~~~Eef~yVl~G~l-~v~v~~g--------e--~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~v-  133 (259)
                      +|.--+.| +  +....++.|++|++ .+.+ |.        +  ...|.+  ...+|+|+|..|.|.+ +..+.+++. 
T Consensus        58 ~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~v-D~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  136 (184)
T 2ixk_A           58 RGVLRGLHYQIRQAQGKLVRATLGEVFDVAV-DLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEE-ECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCceeeEEeCCCCCcCEEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEeC
Confidence            55444556 3  46789999999996 5555 22        2  356766  4789999999999999 444555543 


Q ss_pred             EEecccc
Q 025000          134 ERRYASL  140 (259)
Q Consensus       134 ~~~y~p~  140 (259)
                      ...|.|.
T Consensus       137 s~~Y~p~  143 (184)
T 2ixk_A          137 TDFWAPE  143 (184)
T ss_dssp             SSCCCGG
T ss_pred             CCccChh
Confidence            4555553

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=90.37  E-value=1.1  Score=37.78  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             cEEEEEEEe--cCCCcCCCCC----CCceEEEEEEECEE-EEEE--cCC-------cEEEEeC--CcEEEeCCCCcEEEE
Q 025000           62 HFVMYLANM--QENARSALPP----HDVERFIFVVQGSA-MLTN--ASG-------VSSKLMV--DSYTYLPPNFAHSLR  123 (259)
Q Consensus        62 ~f~~~~~~l--~Pg~~~~~h~----~~~Eef~yVl~G~l-~v~v--~~g-------e~~~L~~--Gd~i~~p~~~~H~~~  123 (259)
                      .|.+.....  .+|.--+.|.    +...+++.|++|++ .+.+  ..+       ....|.+  +-.+|||+|..|.|.
T Consensus        67 ~f~Q~n~S~S~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~  146 (205)
T 3ryk_A           67 SFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFC  146 (205)
T ss_dssp             CCCEEEEEEESSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEE
T ss_pred             CeeEEEEEEeCCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEE
Confidence            344443333  3555445552    35789999999996 3444  112       3457876  789999999999999


Q ss_pred             e-CCeEEEE-EEEEecccc
Q 025000          124 A-EGSATLV-VFERRYASL  140 (259)
Q Consensus       124 N-~~~a~~l-~v~~~y~p~  140 (259)
                      + ...+.++ +....|.|.
T Consensus       147 ~Lsd~a~~~Y~~s~~Y~p~  165 (205)
T 3ryk_A          147 TLVPHTIVMYKVDEYYSAD  165 (205)
T ss_dssp             ECSSSEEEEEEESSCCCTT
T ss_pred             EcCCCEEEEEEcCCCcCCC
Confidence            9 4445544 445556653

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=90.27  E-value=0.76  Score=40.71  Aligned_cols=67  Identities=9%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             EEEecCCcccCcce-eeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC--CccEEEE
Q 025000          183 IMDFQPGDFLNVKE-VHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG--KTRTRYL  249 (259)
Q Consensus       183 ~~t~~PG~~~~~~~-~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G--~e~~~fi  249 (259)
                      .++|+.|..+.... .-..|=++..|.|+|.+..+|+.+.+.+-|.+|++.|..-...+..  ..|++|.
T Consensus        61 ~l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~vdg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fa  130 (289)
T 1ywk_A           61 ELEIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFY  130 (289)
T ss_dssp             CEECCCSGGGTSSSTTTTEEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEE
T ss_pred             eEEcCCCceecccccCCCcEEEEEEccCeEEEEECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEE
Confidence            46677777665411 2344455778999999999999999999999999999874444432  2455544

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=90.25  E-value=2.2  Score=36.45  Aligned_cols=63  Identities=10%  Similarity=0.136  Sum_probs=44.2

Q ss_pred             cCCcccCcceeec---cceEEEEEEceE-EEEeCC--------EEEEcc--C--CcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          187 QPGDFLNVKEVHY---NQHGLLLLEGQG-IYRLGD--------SWYPVQ--A--GDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~H~---~eh~~~il~G~g-~~~~~g--------~~~~v~--~--GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+|.-=+.|-|..   +...+.|++|+. .+.+|.        +|..+.  +  .-.+|+|+|+.|+|.|.+++ .+++|
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  152 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEEE
Confidence            4777767655543   678899999996 444442        355542  3  57899999999999999876 44443

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=89.84  E-value=2.6  Score=35.45  Aligned_cols=67  Identities=9%  Similarity=0.062  Sum_probs=46.4

Q ss_pred             EEEEecCCcccCcceee---ccceEEEEEEceE-EEEeC--------CEEE--Ecc--CCcEEEeCCCCceeEEeCCCcc
Q 025000          182 HIMDFQPGDFLNVKEVH---YNQHGLLLLEGQG-IYRLG--------DSWY--PVQ--AGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       182 ~~~t~~PG~~~~~~~~H---~~eh~~~il~G~g-~~~~~--------g~~~--~v~--~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      ..++..+|.-=+.|-|.   .+..-+.|++|+. .+.+|        |+|.  .+.  .+-.+|+|+|+.|+|.|.++. 
T Consensus        73 ~S~S~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-  151 (205)
T 3ryk_A           73 VSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-  151 (205)
T ss_dssp             EEEESSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-
T ss_pred             EEEeCCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-
Confidence            34445688887776554   3668899999996 22222        3444  344  368999999999999999864 


Q ss_pred             EEEE
Q 025000          246 TRYL  249 (259)
Q Consensus       246 ~~fi  249 (259)
                      ..++
T Consensus       152 a~~~  155 (205)
T 3ryk_A          152 TIVM  155 (205)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=89.75  E-value=1.2  Score=37.28  Aligned_cols=69  Identities=23%  Similarity=0.402  Sum_probs=46.3

Q ss_pred             cCCCcCCCCC----CCceEEEEEEECEE-EEEEcCC----------cEEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEE
Q 025000           71 QENARSALPP----HDVERFIFVVQGSA-MLTNASG----------VSSKLMV--DSYTYLPPNFAHSLRA-EGSATLVV  132 (259)
Q Consensus        71 ~Pg~~~~~h~----~~~Eef~yVl~G~l-~v~v~~g----------e~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~  132 (259)
                      .+|.--+.|.    +....++.|++|++ .+.+ |.          ..+.|.+  ...+|||+|..|.|.| ...+.+++
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly  151 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAV-DVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYF  151 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEE-ECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEE
Confidence            3443335552    34689999999998 5555 22          3357776  6889999999999999 44555544


Q ss_pred             E-EEecccc
Q 025000          133 F-ERRYASL  140 (259)
Q Consensus       133 v-~~~y~p~  140 (259)
                      . ...|.|.
T Consensus       152 ~~s~~Y~p~  160 (196)
T 1wlt_A          152 ITHNEYSPP  160 (196)
T ss_dssp             EESSCCCGG
T ss_pred             EeCCcCChh
Confidence            3 4555553

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=89.75  E-value=0.99  Score=34.79  Aligned_cols=51  Identities=22%  Similarity=0.311  Sum_probs=40.5

Q ss_pred             CCceEEEEEEECEEEEEE-c-CC-----cEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000           81 HDVERFIFVVQGSAMLTN-A-SG-----VSSKLMVDSYTYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~v-~-~g-----e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l  131 (259)
                      .+.-.-+-||+|+++... . ++     +...+.+|+...+||...|++..+.++++-
T Consensus        36 ~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f~   93 (119)
T 3dl3_A           36 VDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFN   93 (119)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEE
T ss_pred             CcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEEE
Confidence            677778899999999984 2 12     457899999999999999999975555543

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=89.74  E-value=2.3  Score=40.33  Aligned_cols=72  Identities=18%  Similarity=0.307  Sum_probs=50.7

Q ss_pred             EEEecCCCcC--CCCCCCceEEEEEEECEEEEEEcC--C----------------------cEEEEeCCcEEEeCCCCcE
Q 025000           67 LANMQENARS--ALPPHDVERFIFVVQGSAMLTNAS--G----------------------VSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        67 ~~~l~Pg~~~--~~h~~~~Eef~yVl~G~l~v~v~~--g----------------------e~~~L~~Gd~i~~p~~~~H  120 (259)
                      -+-+.|+++.  +.|....+-|+.-+.|+=...+..  .                      .+.+|++||.+|+|+|..|
T Consensus       167 N~Y~tp~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H  246 (489)
T 4diq_A          167 NVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIH  246 (489)
T ss_dssp             EEEEECSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEE
T ss_pred             eEEecCCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCce
Confidence            3445566654  467777888988889987776611  0                      1579999999999999999


Q ss_pred             EEEeC-CeEEEEEEEEecc
Q 025000          121 SLRAE-GSATLVVFERRYA  138 (259)
Q Consensus       121 ~~~N~-~~a~~l~v~~~y~  138 (259)
                      ..++. ....+.+-...|+
T Consensus       247 ~~~s~~~~~SlhlTi~~~~  265 (489)
T 4diq_A          247 QAECQDGVHSLHLTLSTYQ  265 (489)
T ss_dssp             EEEBCSSCCEEEEEEEECT
T ss_pred             EEEecCCCceEEEeecccC
Confidence            99983 3344555444444

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=89.32  E-value=1.8  Score=40.52  Aligned_cols=55  Identities=18%  Similarity=0.195  Sum_probs=42.8

Q ss_pred             ecCCCcC--CCCCCCceEEEEEEECEEEEEE-cC-------------------CcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           70 MQENARS--ALPPHDVERFIFVVQGSAMLTN-AS-------------------GVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        70 l~Pg~~~--~~h~~~~Eef~yVl~G~l~v~v-~~-------------------ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      +.|+++.  +.|....+-|+..+.|+=+..+ ..                   ....+|+|||.+|+|+|..|..++
T Consensus       145 ~~~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s  221 (442)
T 2xdv_A          145 ITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADT  221 (442)
T ss_dssp             EECTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEEC
T ss_pred             ECCCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEe
Confidence            3455544  4676778899999999987775 11                   125799999999999999999997

>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17

Probab=89.08  E-value=0.53  Score=39.55  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=38.8

Q ss_pred             CceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcE---EEEeCCeEEEEEEE
Q 025000           82 DVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAH---SLRAEGSATLVVFE  134 (259)
Q Consensus        82 ~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H---~~~N~~~a~~l~v~  134 (259)
                      ...-++||++|++++.+ + ++...|.++|++.+.....-   .+..++.++++++.
T Consensus       139 ~~~~~v~~l~G~~~v~~-~~~~~~~L~~~d~l~~~~~~~~~~~~~~~~g~~~~~~i~  194 (200)
T 1yll_A          139 ASTLLLFAQQDGVAISL-QGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVE  194 (200)
T ss_dssp             CSEEEEEESSSCEEEEE-TTEEEEEECTTCEEEEESCCSCEEEEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEccCcEEEEc-CCCceeecCCCCEEEEeCCCccceeEeccCCceEEEEEE
Confidence            45679999999999998 6 57899999999999776544   33335555655553

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=88.84  E-value=0.9  Score=41.07  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=23.8

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      -...++|||++|+|+|-.|...|.++
T Consensus       261 ~~~~l~pGD~LyiP~gWwH~V~~l~d  286 (349)
T 3d8c_A          261 YETVVGPGDVLYIPMYWWHHIESLLN  286 (349)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTT
T ss_pred             EEEEECCCCEEEECCCCcEEEEEcCC
Confidence            56788999999999999999999974

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=88.52  E-value=0.23  Score=45.79  Aligned_cols=29  Identities=7%  Similarity=-0.058  Sum_probs=24.7

Q ss_pred             eCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000          215 LGDSWYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       215 ~~g~~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      +..-...-++||+||+|+||+|+..|..+
T Consensus       290 v~~~~~~Q~~GeavfiPaG~~HQV~Nl~~  318 (392)
T 2ypd_A          290 VRTCTLIQFLGDAIVLPAGALHQVQNFHS  318 (392)
T ss_dssp             CCCEEEEEETTCEEEECTTCEEEEEESSE
T ss_pred             CeeEEEEEcCCCEEEecCCCHHHHhcccc
Confidence            35556677899999999999999999975

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=88.18  E-value=2.2  Score=32.43  Aligned_cols=82  Identities=7%  Similarity=-0.024  Sum_probs=59.8

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEe
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      |++..+-+.-.|... ..  +=.+.||.. ||.=.-...|.+=|++|+..+.|.|  +|...++|+..-+|.+..=.++.
T Consensus        24 GkV~S~~~~~~dG~~-kT--lGVm~PGe~-~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv   99 (111)
T 3hqx_A           24 GLCISHTVQFEDGTK-KT--LGVILPTEQ-PLTFETHVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIET   99 (111)
T ss_dssp             TTEEEEEEECTTSCE-EE--EEEECCCSS-CEEEECSSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEEC
T ss_pred             CeEEEEEEEeCCCCE-EE--EEEEecccc-ceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEE
Confidence            456666665444322 12  223468861 1222334558999999999999999  69999999999999999888886


Q ss_pred             CCCccEEEEE
Q 025000          241 LGKTRTRYLL  250 (259)
Q Consensus       241 ~G~e~~~fi~  250 (259)
                      .  ++..|+|
T Consensus       100 ~--~~~~Y~C  107 (111)
T 3hqx_A          100 D--EVLDYVC  107 (111)
T ss_dssp             S--SCEEEEE
T ss_pred             C--cceeEEE
Confidence            5  8999999

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=88.09  E-value=2.6  Score=35.94  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             cCCCcCCCCC----CCceEEEEEEECEE-EEEEcCC----------cEEEEeCC--cEEEeCCCCcEEEEe-CCeEEEEE
Q 025000           71 QENARSALPP----HDVERFIFVVQGSA-MLTNASG----------VSSKLMVD--SYTYLPPNFAHSLRA-EGSATLVV  132 (259)
Q Consensus        71 ~Pg~~~~~h~----~~~Eef~yVl~G~l-~v~v~~g----------e~~~L~~G--d~i~~p~~~~H~~~N-~~~a~~l~  132 (259)
                      .+|---+.|.    +....++.|++|++ .+.+ |.          ..+.|.+.  ..+|||+|..|.|.| ...+.+++
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly  152 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVV-DIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMY  152 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEE-CCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEE-ECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEE
Confidence            3444335552    34689999999996 5666 32          23577764  789999999999999 44454444


Q ss_pred             -EEEecccc
Q 025000          133 -FERRYASL  140 (259)
Q Consensus       133 -v~~~y~p~  140 (259)
                       ....|.|.
T Consensus       153 ~~s~~Y~p~  161 (225)
T 1upi_A          153 LCSAEYNPQ  161 (225)
T ss_dssp             EESSCCCTT
T ss_pred             ecCCccCHH
Confidence             45566653

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=87.94  E-value=2.2  Score=36.16  Aligned_cols=63  Identities=8%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             cCCcccCcceeec---cceEEEEEEceEE-EEeC--------CEEEEc--cC--CcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          187 QPGDFLNVKEVHY---NQHGLLLLEGQGI-YRLG--------DSWYPV--QA--GDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~H~---~eh~~~il~G~g~-~~~~--------g~~~~v--~~--GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+|..=+.|-|+.   +...+.|++|+.. +.+|        |+|..+  .+  .-.+|+|+|+.|+|.|.+++ .+++|
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEE
Confidence            4787777655543   6788999999963 3332        235554  33  47899999999999999876 44433

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=87.81  E-value=2.2  Score=35.67  Aligned_cols=65  Identities=9%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             EEEecCCcccCcceeeccceEEEEEE-ceE--EEEeC------CEEE--EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          183 IMDFQPGDFLNVKEVHYNQHGLLLLE-GQG--IYRLG------DSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       183 ~~t~~PG~~~~~~~~H~~eh~~~il~-G~g--~~~~~------g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      ..+ .+|.-=+.| -|.+..-+.|++ |+.  +..+.      |+|.  .+..+-.+|+|+|+.|+|.+.++. .+++|
T Consensus        65 S~s-~~GvlRGlH-~h~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y  140 (197)
T 1nxm_A           65 SFS-RKNVLRGLH-AEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSY  140 (197)
T ss_dssp             EEE-ETTBEEEEE-ECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             EEC-CCCCcceee-ecccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEE
Confidence            344 677777764 457778899999 993  33333      4454  455788999999999999999764 44443

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=87.73  E-value=2.3  Score=35.71  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=41.3

Q ss_pred             CceEEEEEEECEE-EEEEcCC----------cEEEEeCC--cEEEeCCCCcEEEEe-CCeEEEEE-EEEecccc
Q 025000           82 DVERFIFVVQGSA-MLTNASG----------VSSKLMVD--SYTYLPPNFAHSLRA-EGSATLVV-FERRYASL  140 (259)
Q Consensus        82 ~~Eef~yVl~G~l-~v~v~~g----------e~~~L~~G--d~i~~p~~~~H~~~N-~~~a~~l~-v~~~y~p~  140 (259)
                      ....++.|++|++ .+.+ |.          ....|.+.  ..+|||+|..|.|.+ +..+.+++ ....|.|.
T Consensus        70 ~q~Klv~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s~~Y~p~  142 (205)
T 1oi6_A           70 GTAKYVYCARGKAMDIVI-DIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSRSYVTQ  142 (205)
T ss_dssp             CCCEEEEEEESCEEEEEE-CCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEEESSCCCGG
T ss_pred             CCceEEEEeCCEEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEEecCCccCHh
Confidence            4689999999996 5555 32          23567764  789999999999999 44455444 45566653

>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A

Probab=86.70  E-value=7.2  Score=35.31  Aligned_cols=69  Identities=20%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC--CcE--EEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS--GVS--SKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~--ge~--~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      ++.-+.+++.-+...-.-..-+|.=+.|.+|+++++. +  +.+  ..|+++|++|+.|=++|.|+-.+  ++|.+
T Consensus       333 dl~g~~l~Vd~~d~~~DL~d~ge~hY~v~~G~lTL~W-~~~dGt~~a~L~PDgSAwv~PFV~H~w~G~G--tVlkL  405 (443)
T 3g7d_A          333 DLVGSFLRVDADGRGADLIDHAENHYVVTEGRLTLEW-DGPDGPASVELEPDGSAWTGPFVRHRWHGTG--TVLKF  405 (443)
T ss_dssp             TCEEEEEEEC------CBCCSSEEEEEEEESCEEEEE-EETTEEEEEEECTTCEEEECTTCCEEEESSE--EEEEE
T ss_pred             CceeEEEEecCCCcchhhhhcccceEEEecCceEEEe-cCCCCccceEECCCCceeecccccccccCCc--eEEEe
Confidence            3444555554322221113334555669999999998 4  333  58999999999999999998433  44443

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=86.34  E-value=3.4  Score=36.99  Aligned_cols=55  Identities=11%  Similarity=0.146  Sum_probs=41.1

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEc------------------C----------------CcEEEEeCCcEEEeCCC
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTNA------------------S----------------GVSSKLMVDSYTYLPPN  117 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v~------------------~----------------ge~~~L~~Gd~i~~p~~  117 (259)
                      +|+.+..|....+-|+.++.|+=+..+-                  +                ..+.+|+|||.+|+|+|
T Consensus       176 ~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~g  255 (338)
T 3al5_A          176 PGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPAL  255 (338)
T ss_dssp             TTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECTT
T ss_pred             CCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECCC
Confidence            4444456766667888888888666541                  0                13579999999999999


Q ss_pred             CcEEEEeCC
Q 025000          118 FAHSLRAEG  126 (259)
Q Consensus       118 ~~H~~~N~~  126 (259)
                      -.|..+|.+
T Consensus       256 WwH~v~~l~  264 (338)
T 3al5_A          256 WFHNVISEE  264 (338)
T ss_dssp             CEEEEEESS
T ss_pred             CeEEEeeCC
Confidence            999999944

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=85.95  E-value=2.9  Score=34.42  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             CCCcCCCCC----CCceEEEEEEECEE-EEEEc---C----C--cEEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEEE-
Q 025000           72 ENARSALPP----HDVERFIFVVQGSA-MLTNA---S----G--VSSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF-  133 (259)
Q Consensus        72 Pg~~~~~h~----~~~Eef~yVl~G~l-~v~v~---~----g--e~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~v-  133 (259)
                      +|.--+.|.    +....+++|++|++ .+.++   +    |  ....|.+  ...+|+|+|..|.|.+ +..+.+++. 
T Consensus        56 ~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  135 (183)
T 1dzr_A           56 KNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKA  135 (183)
T ss_dssp             TTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEEc
Confidence            554445552    26789999999996 45541   1    1  2356766  4789999999999999 444555443 


Q ss_pred             EEecccc
Q 025000          134 ERRYASL  140 (259)
Q Consensus       134 ~~~y~p~  140 (259)
                      ...|.|.
T Consensus       136 s~~Y~p~  142 (183)
T 1dzr_A          136 TNYYSPS  142 (183)
T ss_dssp             SSCCCTT
T ss_pred             CCccCHh
Confidence            4556553

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=84.76  E-value=1.4  Score=35.60  Aligned_cols=68  Identities=18%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEE----e-CCCCcEEEEeCCeEEEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY----L-PPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~----~-p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ...+.||...-......+.+++|++|++++...+|+...+++||++=    + ......+.+..+.++++.+.
T Consensus        97 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~  169 (202)
T 3bpz_A           97 FEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLS  169 (202)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEE
T ss_pred             ceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEE
Confidence            44667776542222345789999999999976456778999999862    1 11224455567778888774

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=84.38  E-value=1.8  Score=38.17  Aligned_cols=50  Identities=16%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC--ccEEEE
Q 025000          200 NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK--TRTRYL  249 (259)
Q Consensus       200 ~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~--e~~~fi  249 (259)
                      .|=++..|.|+|.+..+|+.+++.+-|.+|++.|..-......+  .|++|.
T Consensus        79 rE~~iV~l~G~~~V~vdG~~f~lg~~dalYVp~g~~~v~~as~da~~~a~fa  130 (282)
T 1xru_A           79 RELGVINIGGAGTITVDGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFY  130 (282)
T ss_dssp             EEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEE
T ss_pred             cEEEEEEccCeEEEEECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEE
Confidence            34457789999999999999999999999999999744444333  355553

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=83.62  E-value=2.8  Score=35.49  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             cCCCcCCCCC----CCceEEEEEEECEE-EEEEcCC----------cEEEEeCC--cEEEeCCCCcEEEEe-CCeEEEEE
Q 025000           71 QENARSALPP----HDVERFIFVVQGSA-MLTNASG----------VSSKLMVD--SYTYLPPNFAHSLRA-EGSATLVV  132 (259)
Q Consensus        71 ~Pg~~~~~h~----~~~Eef~yVl~G~l-~v~v~~g----------e~~~L~~G--d~i~~p~~~~H~~~N-~~~a~~l~  132 (259)
                      .+|---+.|.    +....++.|++|++ .+.+ |.          ..+.|.+.  ..+|||+|..|.|.| +..+.+++
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~V-DlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVV-DLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEE-ECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEE
Confidence            3554335552    34689999999996 4555 22          33577775  789999999999999 44454444


Q ss_pred             -EEEecccc
Q 025000          133 -FERRYASL  140 (259)
Q Consensus       133 -v~~~y~p~  140 (259)
                       ....|.|.
T Consensus       142 ~~s~~Y~p~  150 (216)
T 2c0z_A          142 LSSGTYDPA  150 (216)
T ss_dssp             EESSCCCTT
T ss_pred             ecCCccCHH
Confidence             45556553

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=83.56  E-value=1.5  Score=41.13  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=22.8

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCC
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      ....++|||++|+|+|..|...+.+
T Consensus       199 ~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          199 HEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             EEEEECTTCEEEECTTCEEEEECCS
T ss_pred             eEEEECCCcEEEECCCceEEEEecC
Confidence            4678999999999999999999885

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=83.02  E-value=1.5  Score=39.27  Aligned_cols=27  Identities=19%  Similarity=0.118  Sum_probs=24.0

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      ....++|||++|+|+|-.|...|.+..
T Consensus       240 ~~~~L~pGD~LyiP~gWwH~v~~l~~s  266 (338)
T 3al5_A          240 YECSLEAGDVLFIPALWFHNVISEEFG  266 (338)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEESSCE
T ss_pred             EEEEECCCCEEEECCCCeEEEeeCCCE
Confidence            467889999999999999999999653

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=82.88  E-value=2.6  Score=37.95  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEE-c--------------------------------------CCcEEEEeCCcEE
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTN-A--------------------------------------SGVSSKLMVDSYT  112 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~--------------------------------------~ge~~~L~~Gd~i  112 (259)
                      +|+.++.|....+-+..++.|+=++.+ .                                      ...+.+|+|||.+
T Consensus       192 ~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~L  271 (349)
T 3d8c_A          192 EGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVL  271 (349)
T ss_dssp             TTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECTTCEE
T ss_pred             CCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECCCCEE
Confidence            444556777667889999999876664 0                                      0135799999999


Q ss_pred             EeCCCCcEEEEeC
Q 025000          113 YLPPNFAHSLRAE  125 (259)
Q Consensus       113 ~~p~~~~H~~~N~  125 (259)
                      |+|+|--|..+|.
T Consensus       272 yiP~gWwH~V~~l  284 (349)
T 3d8c_A          272 YIPMYWWHHIESL  284 (349)
T ss_dssp             EECTTCEEEEEEC
T ss_pred             EECCCCcEEEEEc
Confidence            9999999999993

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=82.39  E-value=5.5  Score=30.57  Aligned_cols=50  Identities=12%  Similarity=0.054  Sum_probs=39.8

Q ss_pred             eEEEEEEceEEEEe-C-------CEEEEccCCcEEEeCCCCceeEEeCCCccE--EEEEE
Q 025000          202 HGLLLLEGQGIYRL-G-------DSWYPVQAGDVLWMAPFVPQWYAALGKTRT--RYLLY  251 (259)
Q Consensus       202 h~~~il~G~g~~~~-~-------g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~--~fi~~  251 (259)
                      --+-||+|+..|+. +       .+..-+.+|+..+++|..+|-++.++|-.|  .|.|=
T Consensus        40 gkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f~leFyc~   99 (119)
T 3dl3_A           40 GQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFNINFWSD   99 (119)
T ss_dssp             EEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEEEEEEEC
T ss_pred             EEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEEEEEEEEC
Confidence            44889999999994 3       367788999999999999999997766543  45543

>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A

Probab=81.89  E-value=1.7  Score=39.38  Aligned_cols=43  Identities=16%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             cceEEEEEEceEEEEeCC----EEEEccCCcEEEeCCCCceeEEeCC
Q 025000          200 NQHGLLLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       200 ~eh~~~il~G~g~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      -||-|.|++|.-.++-|+    -...++|+|-.|++|+++|++..+|
T Consensus       354 ge~hY~v~~G~lTL~W~~~dGt~~a~L~PDgSAwv~PFV~H~w~G~G  400 (443)
T 3g7d_A          354 AENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTG  400 (443)
T ss_dssp             SEEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEESSE
T ss_pred             ccceEEEecCceEEEecCCCCccceEECCCCceeecccccccccCCc
Confidence            346688999988887662    3456899999999999999999554

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=81.38  E-value=1.6  Score=32.55  Aligned_cols=68  Identities=9%  Similarity=0.197  Sum_probs=43.9

Q ss_pred             EEEec-CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCC---CCcE--EE-EeCCeEEEEEEE
Q 025000           67 LANMQ-ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP---NFAH--SL-RAEGSATLVVFE  134 (259)
Q Consensus        67 ~~~l~-Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~---~~~H--~~-~N~~~a~~l~v~  134 (259)
                      ...+. +|...-......+.+++|++|.+.+...+|+...+.+||++=..+   +.++  .. ...++++++.+.
T Consensus        41 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~  115 (134)
T 2d93_A           41 FEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIA  115 (134)
T ss_dssp             EEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEE
T ss_pred             EEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEecCCCccChhHhcCCCcceeEEEEEecceEEEEEe
Confidence            45566 665432223446779999999999886457778999999763221   2222  33 446677777774

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=81.13  E-value=8.9  Score=32.03  Aligned_cols=57  Identities=18%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CceEEEEEEECEE-EEEEcCC----------cEEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEE-EEEeccc
Q 025000           82 DVERFIFVVQGSA-MLTNASG----------VSSKLMV--DSYTYLPPNFAHSLRA-EGSATLVV-FERRYAS  139 (259)
Q Consensus        82 ~~Eef~yVl~G~l-~v~v~~g----------e~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~-v~~~y~p  139 (259)
                      ....++.|++|++ .|-+ |-          ....|.+  +-.+|||+|..|.|.+ +..+.++. +...|.|
T Consensus        67 ~q~KlV~~~~G~v~DV~V-DlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~~Y~~t~~Y~p  138 (201)
T 4hn1_A           67 GQAKYSVCVRGAGLDVVV-DVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFLCSSGYAP  138 (201)
T ss_dssp             CCCEEEEEEESEEEEEEE-CCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEEEEEESSCCCG
T ss_pred             CceEEEEEeCCeEEEEEE-ECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEEEEeCCCCcCh
Confidence            6789999999995 4444 32          2457776  7899999999999999 44455543 3444555

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=81.12  E-value=3.4  Score=30.74  Aligned_cols=67  Identities=7%  Similarity=-0.031  Sum_probs=44.4

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEEe-----CCCCcEEEEeCCeEEEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYL-----PPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~~-----p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ...+++|...-......+.+++|++|.+.+.. +|+. ..+.+||++=.     ........+..++++++.+.
T Consensus        48 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~  120 (139)
T 3ocp_A           48 PVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAID  120 (139)
T ss_dssp             EEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TTEEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEE
T ss_pred             EEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CCEEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEc
Confidence            45566665442223456889999999999987 7765 58999997632     22233345556678887774

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=80.97  E-value=1.4  Score=32.80  Aligned_cols=65  Identities=8%  Similarity=-0.034  Sum_probs=44.4

Q ss_pred             EEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEe-----CCCCceeEEeCCCccE
Q 025000          180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM-----APFVPQWYAALGKTRT  246 (259)
Q Consensus       180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~-----~~~~~H~~~n~G~e~~  246 (259)
                      .++..++++|..+-. +-....+.|+|++|...+...+ ...+.+||++-.     ..-....+.+..+..+
T Consensus        33 ~~~~~~~~~g~~i~~-~g~~~~~~y~i~~G~v~~~~~~-~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~  102 (138)
T 1vp6_A           33 ALRARTVPAGAVICR-IGEPGDRMFFVVEGSVSVATPN-PVELGPGAFFGEMALISGEPRSATVSAATTVSL  102 (138)
T ss_dssp             HCEEEEECTTCEEEC-TTSCCCEEEEEEESCEEECSSS-CEEECTTCEECHHHHHHCCCCSSCEEESSSEEE
T ss_pred             hhcEEEeCCCCEEEe-CCCCcceEEEEEeeEEEEEeCC-cceECCCCEeeehHhccCCCceeEEEECCCEEE
Confidence            346788999998843 4445568899999999998777 568899998532     1123455666554333

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=80.91  E-value=1.5  Score=32.66  Aligned_cols=48  Identities=8%  Similarity=0.043  Sum_probs=36.9

Q ss_pred             EEEEEEec-CCcccCcceeeccceEEEEEEceEEEEe-CCEEEEccCCcEE
Q 025000          180 NIHIMDFQ-PGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVL  228 (259)
Q Consensus       180 ~~~~~t~~-PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g~~~~v~~GD~i  228 (259)
                      .+...+++ +|..+= .+-....+.|+|++|...+.. +|+...+.+||++
T Consensus        38 ~~~~~~~~~~g~~i~-~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~G~~f   87 (134)
T 2d93_A           38 VMIFEVVEQAGAIIL-EDGQELDSWYVILNGTVEISHPDGKVENLFMGNSF   87 (134)
T ss_dssp             TEEEEEECSSSCEEE-CTTCEECEEEECCBSCEEEECSSSCEEEECTTCEE
T ss_pred             hheEEEecCCCCEEE-eCCCCCCeEEEEEeCEEEEEcCCCcEEEecCCCcc
Confidence            46788888 998873 344455578999999998775 5677889999976

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=80.87  E-value=3.3  Score=31.55  Aligned_cols=67  Identities=9%  Similarity=-0.010  Sum_probs=44.6

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEEe-----CCCCcEEEEeCCeEEEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYL-----PPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~~-----p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ...+++|...-......+.+++|++|.+.+.. +|+. ..+.+||++=.     ...........++++++.+.
T Consensus        63 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~  135 (154)
T 3pna_A           63 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGID  135 (154)
T ss_dssp             EEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TTEEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEE
T ss_pred             EEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-CCEEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEe
Confidence            45667775443223456899999999999998 7765 57999998632     11223344456677777764

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=80.55  E-value=10  Score=28.43  Aligned_cols=67  Identities=16%  Similarity=0.038  Sum_probs=45.5

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEEeCC-------CCcEEEEeCCeEEEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYLPP-------NFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~~p~-------~~~H~~~N~~~a~~l~v~  134 (259)
                      ...+++|...-......+.+++|++|.+++.. +++. ..+.+||++=..+       ......+..++++++.+.
T Consensus        52 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~  126 (160)
T 4f8a_A           52 TVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIK  126 (160)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEESEEEEEE-TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEE
T ss_pred             eeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEc
Confidence            35566665432223456899999999999998 6655 5899999886432       223345557778888774

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=80.53  E-value=2  Score=39.60  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=22.9

Q ss_pred             CCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000          100 SGVSSKLMVDSYTYLPPNFAHSLRAEG  126 (259)
Q Consensus       100 ~ge~~~L~~Gd~i~~p~~~~H~~~N~~  126 (259)
                      ..=++.-++||.|+||+|-+|+.+|-.
T Consensus       291 ~~~~~~Q~~GeavfiPaG~~HQV~Nl~  317 (392)
T 2ypd_A          291 RTCTLIQFLGDAIVLPAGALHQVQNFH  317 (392)
T ss_dssp             CCEEEEEETTCEEEECTTCEEEEEESS
T ss_pred             eeEEEEEcCCCEEEecCCCHHHHhccc
Confidence            344567899999999999999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	3e-67
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	2e-66
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	5e-60
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	2e-57
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-04
d2arca_	161	b.82.4.1 (A:) Regulatory protein AraC {Escherichia	0.001
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	0.001
d2pyta1	128	b.82.1.24 (A:100-227) Ethanolamine utilization pro	0.004
d1vj2a_	114	b.82.1.10 (A:) Hypothetical protein TM1459 {Thermo	0.004

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  206 bits (525), Expect = 3e-67
 Identities = 94/244 (38%), Positives = 133/244 (54%), Gaps = 7/244 (2%)

Query: 20  GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPA--MGSHFVMYLANMQENARSA 77
           G TRS     HA+ITPE+ V + L EW  +     I P   +G+ FV + A M   A++ 
Sbjct: 5   GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQA- 63

Query: 78  LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 137
                 +RF FV+ G   +    G +  L    Y YLP    H L A+  A + VFE+ Y
Sbjct: 64  -TESVYQRFAFVLSGEVDVA-VGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121

Query: 138 ASLENHITEQIVGSTDKQ--PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
            ++E      +    +++         +    RKLLP    FDF +  M F PG  L   
Sbjct: 122 QTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYA 181

Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVN 255
           EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM    PQWY ALG+  ++YLLYKD+N
Sbjct: 182 EVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN 241

Query: 256 RNPL 259
           R+PL
Sbjct: 242 RHPL 245

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score =  204 bits (521), Expect = 2e-66
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)

Query: 22  TRSVYKRD-HALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 80
           +R+V K+D +A+I  +  V + +P + N   + L +P +G+ FV Y+A   +N +     
Sbjct: 6   SRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGF 65

Query: 81  H--DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLVVFERR 136
               ++  ++V+ G   +++    + +L    Y Y  P     L         + ++++R
Sbjct: 66  GGDGIQTLVYVIDGRLRVSDG-QETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKR 124

Query: 137 YASLENHITEQIVGST-DKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
           Y  L  H   ++VGS  D+QP          L  LLP+   FD N+HI+ F+PG      
Sbjct: 125 YQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYI 184

Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR-TRYLLYKDV 254
           E H  +HG  L+ GQG+Y L + WYPV+ GD ++M+ +VPQ   A+G+     Y+  KD 
Sbjct: 185 ETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA 244

Query: 255 NRNP 258
           NR P
Sbjct: 245 NREP 248

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score =  188 bits (478), Expect = 5e-60
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 22  TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 80
            R++ K  + AL+TP+  V + +P + N     L TP +G+ FV YL  + +N  +    
Sbjct: 9   NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 68

Query: 81  H--DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLVVFERR 136
               +E F++V+ G+     A G +  L    Y Y PP    +     +  + + +++RR
Sbjct: 69  GGEGIETFLYVISGNITAK-AEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRR 127

Query: 137 YASLENHITEQIVGS-TDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
           Y  +E +    + G+ ++ + +     +   L   LP+ + FD N+HI+ F PG      
Sbjct: 128 YVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYI 187

Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKDV 254
           E H  +HG  +L GQG+Y L ++W PV+ GD ++M  +  Q    +G+     Y+  KD 
Sbjct: 188 ETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDC 247

Query: 255 NRNP 258
           NR+ 
Sbjct: 248 NRDV 251

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  182 bits (463), Expect = 2e-57
 Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 14/250 (5%)

Query: 22  TRSVYKRDHALI---TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARS 76
            R+++   +A+I        V S LP W N     +  P  G    F  Y+  +  N  S
Sbjct: 20  DRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGS 79

Query: 77  ALPPHD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS--ATLVV 132
             P  D   E  +FVV+G   LT   G    +    Y ++PP   + +R           
Sbjct: 80  DKPEQDPNAEAVLFVVEGELSLTLQ-GQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW 138

Query: 133 FERRYASLENHITEQIVGSTDKQ----PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQP 188
             + Y  ++     +   + ++      + +T G     R +    +  D +++I++F+P
Sbjct: 139 IRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEP 198

Query: 189 GDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY 248
           G  +   E H  +HGL +LEG+ +YRL   W  V+AGD +W+  F PQ   + G  R RY
Sbjct: 199 GGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRY 258

Query: 249 LLYKDVNRNP 258
           LLYKDVNR+ 
Sbjct: 259 LLYKDVNRHM 268

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 24/200 (12%), Positives = 52/200 (26%), Gaps = 3/200 (1%)

Query: 51  GAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDS 110
           G Y   PA   H     ++        +  +    +  +        +    S ++  + 
Sbjct: 88  GDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNER 147

Query: 111 YTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKL 170
           +             E              L +     ++ S +   L  T  ++ ++   
Sbjct: 148 FAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRL-LTGDQLHRI-VA 205

Query: 171 LPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWM 230
             +     F +   +   GD +      Y+      LEGQ           +  GD L +
Sbjct: 206 AQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHV 265

Query: 231 APFVPQWYAALGKTRTRYLL 250
                  Y       T+ + 
Sbjct: 266 PANTVHSYRLDSHY-TKMVG 284

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]} Length = 161

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 204 LLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
            L + GQG+ +     +  + GD+L   P     Y  
Sbjct: 42  NLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGR 78

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 4/131 (3%)

Query: 48  NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLM 107
              G   IT  + +   +    +     +    H+     F+V+G    T   G  + + 
Sbjct: 43  ALRGQSSITATLYAGLQL----IMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMN 98

Query: 108 VDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQL 167
              +   P    H     G   ++  +     L N +         ++    T  E   L
Sbjct: 99  EGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYL 158

Query: 168 RKLLPQAVPFD 178
            +     +P  
Sbjct: 159 PRYAANMLPLR 169

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 3/80 (3%)

Query: 54  LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY 113
           L+T   GS                   +D      V++G   + +  G +         +
Sbjct: 45  LVTEQDGSSMAAGFMQWDNAFFPWTLNYD--EIDMVLEGELHVRHE-GETMIAKAGDVMF 101

Query: 114 LPPNFAHSLRAEGSATLVVF 133
           +P   +       S   +  
Sbjct: 102 IPKGSSIEFGTPTSVRFLYV 121

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Length = 114

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 54  LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY 113
           LI      +FVM L  ++         H  E  IFV++G   +         +    Y +
Sbjct: 27  LIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIF 85

Query: 114 LPPNFAHSLRAEGSATLVV 132
           + PN  H  R +  + +  
Sbjct: 86  VEPNEIHGFRNDTDSEVEF 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	100.0
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	100.0
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	100.0
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	100.0
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.95
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.89
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.89
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.87
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.86
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.83
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.81
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.77
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.73
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.7
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.7
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.68
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.67
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.67
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.65
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.6
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.55
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.54
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.53
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.52
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.51
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.49
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.49
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.47
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.47
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.46
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.46
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.45
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.42
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.4
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.39
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.33
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.24
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.15
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.12
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.1
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.08
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.95
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.95
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.91
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.89
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.87
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.87
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.85
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.82
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.71
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.68
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.65
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.62
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.61
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	98.59
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.59
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.56
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	98.56
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.54
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.51
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	98.48
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.48
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.46
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	98.44
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.4
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.4
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.38
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.35
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.25
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	98.23
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	98.23
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.2
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.14
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.09
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	97.97
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	97.93
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	97.89
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	97.71
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.67
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	97.64
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.48
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.45
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.4
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.36
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	97.35
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.29
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.16
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	97.11
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	96.74
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	96.59
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	96.42
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	96.23
d1ylla1	195	Hypothetical protein PA5104 {Pseudomonas aeruginos	96.14
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	95.95
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	95.7
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	95.6
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	95.05
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	94.93
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	94.87
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	94.28
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	94.06
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	93.6
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	92.81
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	92.55
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	90.92
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	90.89
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	90.5
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	90.42
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	89.28
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	88.41
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	88.32
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	88.17
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	88.17
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	87.68
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	87.4
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	86.82
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	86.66
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	86.11
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	85.37
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	84.93
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	84.37
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	84.13
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	83.7
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	82.13
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	81.77
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	81.67
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	80.97
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	80.46
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	80.36
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	80.27
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	80.15

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.1e-62  Score=431.53  Aligned_cols=241  Identities=40%  Similarity=0.735  Sum_probs=227.8

Q ss_pred             ccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCC--CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECE
Q 025000           16 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAM--GSHFVMYLANMQENARSALPPHDVERFIFVVQGS   93 (259)
Q Consensus        16 ~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~--g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~   93 (259)
                      ++++|+|||+++++||+|+||++|++.+|+|++++.++|++|..  ++.|+|++++++||+++.  .++.|+++||++|+
T Consensus         1 ~~~~~~tRs~~~~~~a~i~P~~~v~s~~P~w~~~~~~~l~sP~~g~~~~F~~~~v~~~pGg~~~--~~~~E~~~~Vl~G~   78 (245)
T d1sfna_           1 MKHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQAT--ESVYQRFAFVLSGE   78 (245)
T ss_dssp             CGGGTCCSCEEETTEEEECGGGCCCBCCTTSTTCEEEEEECTTSTTCCSSEEEEEEECTTCEEE--CCSSEEEEEEEEEE
T ss_pred             CcccccceeeeecceEEECCcccEecCCCCCCCcEEEEEecCCCCCCCceEEEEEEECCCCCCC--CCCccEEEEEEECE
Confidence            46789999999999999999999999999999999999999986  478999999999998764  45789999999999


Q ss_pred             EEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceEEEEEee
Q 025000           94 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRKLL  171 (259)
Q Consensus        94 l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~~~~~l~  171 (259)
                      +++++ +|+++.|++||++|+|+|.+|+++|.+.+.+.|+.++|++.++. +|..+++++++++..+..+ .....+.++
T Consensus        79 ~~~~~-~g~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~r~l~  157 (245)
T d1sfna_          79 VDVAV-GGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLL  157 (245)
T ss_dssp             EEEEC-SSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEEEECCCCBTTBCCCCCEEEETTTCCCEETTSCTTEEEEECS
T ss_pred             EEEEE-CCEEEEecCCCEEEeCCCCcEEEEeCCCccEEEEEeecccccccCCCcceecccccccccCCccccceEEEecC
Confidence            99999 99999999999999999999999998889999999999999874 7899999999999999865 566778888


Q ss_pred             CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          172 PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       172 p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      |.+.++++.+++++|+||+.++.||+|.+||.+|||+|+|++.+||+|++|++||+||++++|+|+++|+|+++++||||
T Consensus       158 p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~~~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~  237 (245)
T d1sfna_         158 PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY  237 (245)
T ss_dssp             CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEEE
T ss_pred             CcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEeeEeCCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCC
Q 025000          252 KDVNRNPL  259 (259)
Q Consensus       252 k~~nr~~~  259 (259)
                      ||||||||
T Consensus       238 k~~~~~p~  245 (245)
T d1sfna_         238 KDMNRHPL  245 (245)
T ss_dssp             EECSSCCC
T ss_pred             ecCCCCCC
Confidence            99999997

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=8e-62  Score=433.96  Aligned_cols=243  Identities=29%  Similarity=0.511  Sum_probs=221.7

Q ss_pred             cccCCCCceeeeeeceEEECC---CCceeccCCCCCcceEEEEecCCCC--CcEEEEEEEecCCCcCC--CCCCCceEEE
Q 025000           15 LQDLPGFTRSVYKRDHALITP---ESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSA--LPPHDVERFI   87 (259)
Q Consensus        15 ~~~~~~~tR~~~~~~~avi~p---e~~v~~~lp~~~~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~--~h~~~~Eef~   87 (259)
                      =++.+..+||+++++|++||.   ++.|.+.+|+|++++.|+|++|.+|  +.|++++++++||+++.  .|.++.|||+
T Consensus        13 ~~~~l~~~Rav~~~~yavip~~~~~~iv~s~lP~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~   92 (273)
T d1sq4a_          13 AQTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVL   92 (273)
T ss_dssp             C---CCCCCCEECSSEEEECGGGCCGGGCBCCTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEE
T ss_pred             chhHhccCceEeccceEEccCcccccceeecCCCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEE
Confidence            345667899999999999966   6799999999999999999999998  68999999999999764  3457789999


Q ss_pred             EEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC--
Q 025000           88 FVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG--  162 (259)
Q Consensus        88 yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g--  162 (259)
                      ||++|++++++ +|+++.|++||++|+|+|.+|+++|  +++++++|++++|++.+|. +|..++++++|+++.++++  
T Consensus        93 yVl~G~~~l~~-~g~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i~k~y~~~~g~~~p~~~v~~~~dv~p~~~~~~~  171 (273)
T d1sq4a_          93 FVVEGELSLTL-QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTE  171 (273)
T ss_dssp             EEEESCEEEEE-SSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEECCCCTTCCCCCCEEEEGGGSCCEECSSGG
T ss_pred             EEEeCEEEEEE-CCEEEEecCCCEEEECCCCcEeeeecCCCCEEEEEEEeccccccccccccccccChhccCcccccCCC
Confidence            99999999999 9999999999999999999999999  6799999999999999986 6889999999999999865  


Q ss_pred             ceE-EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVF-QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~-~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +.. ..+.++|++..++|+|++++|+||++++.+|+|.+||++|||+|+|+|++||+|++|++||+||++++|+|+++|+
T Consensus       172 ~~~~~~r~~~p~d~~~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~~~~~~~v~~GD~i~~~~~~ph~~~n~  251 (273)
T d1sq4a_         172 GRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSG  251 (273)
T ss_dssp             GCEEEECSSCTTCTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCEEEEEESCCEEEECC
T ss_pred             ceeEEEEeeCCcccccceEEEEEEEccCCccccccccccceEEEEEccEEEEEECCEEEEecCCCEEEECCCCCEEeEeC
Confidence            332 3344668899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEeecCCCC
Q 025000          242 GKTRTRYLLYKDVNRNP  258 (259)
Q Consensus       242 G~e~~~fi~~k~~nr~~  258 (259)
                      |++|++||+|||||||+
T Consensus       252 g~~p~~yl~~kd~nR~~  268 (273)
T d1sq4a_         252 GPGRFRYLLYKDVNRHM  268 (273)
T ss_dssp             SSSCEEEEEEEECSSCC
T ss_pred             CCCCEEEEEEEEcCcCc
Confidence            99999999999999995

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=6.5e-59  Score=410.07  Aligned_cols=239  Identities=31%  Similarity=0.599  Sum_probs=224.5

Q ss_pred             CCCceeeeee-ceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCC--CCCCCceEEEEEEECEEE
Q 025000           19 PGFTRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSA--LPPHDVERFIFVVQGSAM   95 (259)
Q Consensus        19 ~~~tR~~~~~-~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~--~h~~~~Eef~yVl~G~l~   95 (259)
                      |..|||++++ +||+++||+++.+.+|+|+++++++|++|.+|++|.+++++++||+...  .|+++.|||+|||+|+++
T Consensus         3 l~~~r~~~~~~~~a~i~p~~~v~~~~P~~~~~~~~~L~sp~~Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~   82 (250)
T d1sefa_           3 LLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLR   82 (250)
T ss_dssp             CCCCCCEEETTTEEEECGGGCCCCCCTTEEEEEEEECSCGGGTCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEE
T ss_pred             ccccceeeeecCEEEECCcCcEeccCCCcCcEEEEEEcCcccCCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEE
Confidence            5679999988 6999999999999999999999999999999999999999999999763  345788999999999999


Q ss_pred             EEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCC-ceEEEEEeeC
Q 025000           96 LTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLP  172 (259)
Q Consensus        96 v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g-~~~~~~~l~p  172 (259)
                      +++ +|+++.|++||++|||+|.+|+++|  +++++++||.++|.+.++..|.++.++..+++.....+ +....+.++|
T Consensus        83 ~~~-~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~y~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~~~~p  161 (250)
T d1sefa_          83 VSD-GQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLP  161 (250)
T ss_dssp             EEC-SSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCEEGGGCTTEEEEECSC
T ss_pred             EEE-CCEEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEEEEeccccccccccccccccccccccccCCccccceEEecC
Confidence            999 9999999999999999999999999  67999999999999999999999999999999888754 5556677889


Q ss_pred             CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC-CccEEEEEE
Q 025000          173 QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG-KTRTRYLLY  251 (259)
Q Consensus       173 ~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G-~e~~~fi~~  251 (259)
                      .+.+.++.+++++|+||+.+|.+|+|.+||.+|||+|+|.+.+||+++++++||+||++++|+|++.|+| +++++||+|
T Consensus       162 ~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~~~~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~  241 (250)
T d1sefa_         162 KEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYS  241 (250)
T ss_dssp             SSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEE
T ss_pred             ccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEEeEcCCCCCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 589999999


Q ss_pred             eecCCCC
Q 025000          252 KDVNRNP  258 (259)
Q Consensus       252 k~~nr~~  258 (259)
                      |||||||
T Consensus       242 k~~~~~~  248 (250)
T d1sefa_         242 KDANREP  248 (250)
T ss_dssp             EECSSCC
T ss_pred             ecCCCCC
Confidence            9999997

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-56  Score=393.38  Aligned_cols=240  Identities=28%  Similarity=0.537  Sum_probs=217.8

Q ss_pred             CCCCceeeeee-ceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCC--CCCCceEEEEEEECEE
Q 025000           18 LPGFTRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSAL--PPHDVERFIFVVQGSA   94 (259)
Q Consensus        18 ~~~~tR~~~~~-~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~--h~~~~Eef~yVl~G~l   94 (259)
                      .+..+||++++ +|++++|++.+.+.+|+|+++..++|++|.+|+.|++++++|+||+++..  |+++.|||+||++|++
T Consensus         5 ~~l~~r~~~~~~~~a~i~P~~~~~~~~P~~~~~~~~~l~sp~~g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~   84 (253)
T d1rc6a_           5 DLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNI   84 (253)
T ss_dssp             HHTCCCCEECTTSEEEECGGGSCCBCCTTEEEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEE
T ss_pred             hhhhcceeeeccCEEEECCCcccccCCCCCCCeeEEEEeCcccCCceEEEEEEECCCcccCCcccCCCcEEEEEEEECEE
Confidence            34678999988 79999999999999999999999999999999999999999999987643  4578899999999999


Q ss_pred             EEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCC-ceEEEEEee
Q 025000           95 MLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLL  171 (259)
Q Consensus        95 ~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g-~~~~~~~l~  171 (259)
                      ++++ +|+++.|++||++|+|++..|+++|  +++++++|+.++|...++..|.....++.+++..+..+ +....+.+.
T Consensus        85 ~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  163 (253)
T d1rc6a_          85 TAKA-EGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFL  163 (253)
T ss_dssp             EEEE-TTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCCTTCCCCCEEEEGGGSCCC-------CEEEECS
T ss_pred             EEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeccccCCCccceeecccccccccccccccceeEEEEec
Confidence            9999 9999999999999999999999999  66899999999999999888999999999999988765 555777788


Q ss_pred             CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEE
Q 025000          172 PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLL  250 (259)
Q Consensus       172 p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~  250 (259)
                      |.+...++.+++++|+||++++.+|+|..||.+|||+|+|.+.+||+++++++||+||++++|+|++.|+|+ ++++||+
T Consensus       164 p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~  243 (253)
T d1rc6a_         164 PKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIY  243 (253)
T ss_dssp             CCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSEEEEEEEC----CEEEEE
T ss_pred             CccccccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEeeeeCCCCCcEEEEE
Confidence            999999999999999999999989999999999999999999999999999999999999999999999996 6689999


Q ss_pred             EeecCCCC
Q 025000          251 YKDVNRNP  258 (259)
Q Consensus       251 ~k~~nr~~  258 (259)
                      ||||||||
T Consensus       244 ~~~~~~~~  251 (253)
T d1rc6a_         244 SKDCNRDV  251 (253)
T ss_dssp             EEECSCCC
T ss_pred             EECCCCCC
Confidence            99999997

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=1.9e-26  Score=208.62  Aligned_cols=202  Identities=18%  Similarity=0.174  Sum_probs=147.9

Q ss_pred             cceEEEEecCC-CCCcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-
Q 025000           48 NTLGAYLITPA-MGSHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-  124 (259)
Q Consensus        48 ~~~~~~l~sp~-~g~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-  124 (259)
                      +...++++++. .+..|++++++++||+..+.|.| ..+|++||++|++++++ +|+++.|++||++++|++.+|+++| 
T Consensus        26 g~~~~~~~~~~~t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~n~  104 (330)
T d1y3ta1          26 RQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGERYLLISGDYANIPAGTPHSYRMQ  104 (330)
T ss_dssp             TEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTCCEEEEEC
T ss_pred             CceEEEEEeccCCCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE-CCEEEEEcCCCEEEeCCCCeEEEEEc
Confidence            35667777775 46789999999999998888844 67899999999999999 9999999999999999999999999 


Q ss_pred             CCeEEEEEEEEec----------cccCCC-Cccee-------------------------------eccCCCCCCcc---
Q 025000          125 EGSATLVVFERRY----------ASLENH-ITEQI-------------------------------VGSTDKQPLLE---  159 (259)
Q Consensus       125 ~~~a~~l~v~~~y----------~p~~g~-~p~~~-------------------------------v~~~~di~~~~---  159 (259)
                      ..+++++++..+.          .+.++. .+...                               ......++...   
T Consensus       105 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  184 (330)
T d1y3ta1         105 SHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPY  184 (330)
T ss_dssp             STTEEEEEEEETTSSTHHHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSSCCE
T ss_pred             CCCeEEEEEECCccHHHhhhhhceecccccCCccccccccccccccccccccccccccccccccccccccccCCccceee
Confidence            4466666665431          001100 00000                               00000111111   


Q ss_pred             --c--CC-----ceEEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEE
Q 025000          160 --T--PG-----EVFQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW  229 (259)
Q Consensus       160 --~--~g-----~~~~~~~l~p-~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~  229 (259)
                        .  +|     ++...+.+.. .+....+.+..+++.||..++.|.|+..+|.+|||+|++.+.+||+++++++||+++
T Consensus       185 ~~~~~~g~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v~~~~~~~~~Gd~~~  264 (330)
T d1y3ta1         185 VLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLH  264 (330)
T ss_dssp             EECTTCSEEEEETTEEEEEEECGGGTTTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETTEEEEECTTCEEE
T ss_pred             EEEcccCceEecCCceEEEcCCCcccCCcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEECCEEEEeCCCCEEE
Confidence              0  11     1223333332 333456778899999999999866656789999999999999999999999999999


Q ss_pred             eCCCCceeEEeCCCccEEEEEE
Q 025000          230 MAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       230 ~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +++|.+|+|.|.|+ ++++|..
T Consensus       265 vP~g~~H~~~~~~~-~~~~l~~  285 (330)
T d1y3ta1         265 VPANTVHSYRLDSH-YTKMVGV  285 (330)
T ss_dssp             ECTTCCEEEEECSS-SEEEEEE
T ss_pred             ECcCCcEEeEeCCC-CeEEEEE
Confidence            99999999999875 6777764

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.5e-22  Score=179.97  Aligned_cols=201  Identities=12%  Similarity=0.165  Sum_probs=140.9

Q ss_pred             eEEEEecCCCC------CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEE
Q 025000           50 LGAYLITPAMG------SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR  123 (259)
Q Consensus        50 ~~~~l~sp~~g------~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~  123 (259)
                      ++.+|++|..+      ..|...+.+|+||+..+.|.|..+|++|||+|++++++.+++++.+++||++++|+|..|.++
T Consensus        35 r~~~l~np~~~~~~~~~~~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~~~~~~~~~Gd~~~~P~~~~H~~~  114 (308)
T d2d40a1          35 RVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHG  114 (308)
T ss_dssp             ---EECCSSCTTSCCSSSSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEE
T ss_pred             EEEEeeCCCcCCCcccCccceeeeEEECCCCccccccCchhheEEEEEeeEEEEEecCEEEEecCCCEEEeCCCceEEeE
Confidence            33456666442      368888999999998888888889999999999987533889999999999999999999999


Q ss_pred             e--CCeEEEEEEEEe---------c-cccCCC-Ccce--------------e---eccCCCCCCcc--------------
Q 025000          124 A--EGSATLVVFERR---------Y-ASLENH-ITEQ--------------I---VGSTDKQPLLE--------------  159 (259)
Q Consensus       124 N--~~~a~~l~v~~~---------y-~p~~g~-~p~~--------------~---v~~~~di~~~~--------------  159 (259)
                      |  ++++.++.+...         | .+.+.. .+..              .   .....+-+...              
T Consensus       115 n~g~e~~~~l~~~d~pl~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  194 (308)
T d2d40a1         115 NPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLT  194 (308)
T ss_dssp             CCSSSCEEEEEEECHHHHHHHTCCCEEECC--CCCCCSCTTTHHHHHSSSEECSSCCCCSSCSCCEECHHHHHHHHHHHH
T ss_pred             ECCCCCEEEEEEeccchhhhcCeeeeccCcccccccccCccchhhhcccccccccccccccCcccccchhhHHHHHHHHH
Confidence            9  567788776421         0 000000 0000              0   00000000000              


Q ss_pred             --cCC---ceEEEEEeeCCC---CCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeC
Q 025000          160 --TPG---EVFQLRKLLPQA---VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMA  231 (259)
Q Consensus       160 --~~g---~~~~~~~l~p~~---~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~  231 (259)
                        .++   .+..++...+..   ....+.+....++||...+. |.|..++.+||++|+|.+.+||+..++++||++++|
T Consensus       195 ~~~~~~~~~g~~v~~~~~~~~~~~~~t~~~~~~~l~pG~~~~~-h~h~~~~~~~v~~G~g~~~v~~~~~~~~~GD~~~vP  273 (308)
T d2d40a1         195 RLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRV-ARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVP  273 (308)
T ss_dssp             TTSCCBTTTBEEEEECCTTTSSCSSSSCEEEEEEECTTCBCCC-BEESSCEEEEEEEEEEEEEETTEEEEEETTCEEEEC
T ss_pred             hccCCCCCCceEEEeeccccccCccceeEEEEEEccCCCccCC-ccCChheEEEEEeCcEEEEECCEEEEEeCCCEEEeC
Confidence              011   222333333432   23567888899999999997 577888999999999999999999999999999999


Q ss_pred             CCCceeEEeCCCccEEEEEEee
Q 025000          232 PFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       232 ~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      +++.|++.|+|+.  .++.++|
T Consensus       274 ~~~~h~~~~~~d~--~l~~v~D  293 (308)
T d2d40a1         274 TWHGVSFQTTQDS--VLFSFSD  293 (308)
T ss_dssp             TTCCEEEEEEEEE--EEEEEES
T ss_pred             CCCeEEEEcCCCe--EEEEEcC
Confidence            9999999998754  4455555

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.89  E-value=5.4e-22  Score=180.67  Aligned_cols=203  Identities=12%  Similarity=0.086  Sum_probs=142.2

Q ss_pred             ceEEEEecC-CCCCcEEEEEEEecCCCcC--CCCCC-CceEEEEEEECEEEEEEc----CCcEEEEeCCcEEEeCCCCcE
Q 025000           49 TLGAYLITP-AMGSHFVMYLANMQENARS--ALPPH-DVERFIFVVQGSAMLTNA----SGVSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        49 ~~~~~l~sp-~~g~~f~~~~~~l~Pg~~~--~~h~~-~~Eef~yVl~G~l~v~v~----~ge~~~L~~Gd~i~~p~~~~H  120 (259)
                      ..+++++++ ..+..|.++.+.++||+..  ..|.| ..+|.+||++|++++++.    ++++..|++||++++|+|++|
T Consensus        31 ~~~~~~~~~~~t~g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H  110 (348)
T d1juha_          31 QLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTH  110 (348)
T ss_dssp             EEEEEEECHHHHTTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEE
T ss_pred             CEEEEEeccccCCCeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeE
Confidence            345666665 4467899999999999864  45655 568999999999999982    126789999999999999999


Q ss_pred             EEEe-CCeEEEEEEEEecc----------ccC-CCC----c------------ceeecc---------------------
Q 025000          121 SLRA-EGSATLVVFERRYA----------SLE-NHI----T------------EQIVGS---------------------  151 (259)
Q Consensus       121 ~~~N-~~~a~~l~v~~~y~----------p~~-g~~----p------------~~~v~~---------------------  151 (259)
                      .++| +..++++++..+-.          +.. ...    |            ......                     
T Consensus       111 ~~~n~~~~~~~l~v~~pg~~e~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  190 (348)
T d1juha_         111 TFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNG  190 (348)
T ss_dssp             EEEECSTTEEEEEEEESSCTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTT
T ss_pred             eeEeCCCCcEEEEEECCCcHHHHHHhhCCchhccCCcccccccccchhhccCChhhhccccccccccccccCCccccccc
Confidence            9999 55788888765421          000 000    0            000000                     


Q ss_pred             -------CCC-------CCCccc-------------CCceEEEEEee-CC---CCCcceEEEEEEecCCcccCcceeecc
Q 025000          152 -------TDK-------QPLLET-------------PGEVFQLRKLL-PQ---AVPFDFNIHIMDFQPGDFLNVKEVHYN  200 (259)
Q Consensus       152 -------~~d-------i~~~~~-------------~g~~~~~~~l~-p~---~~~~~~~~~~~t~~PG~~~~~~~~H~~  200 (259)
                             |..       ....++             ..+....|.++ +.   .....+.+..++++||+....|+||..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~i~~~~~~~~~t~~~~~~~~~~~~~~~pg~~~~~~~~~~~  270 (348)
T d1juha_         191 TAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPG  270 (348)
T ss_dssp             EESSSSCSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSS
T ss_pred             cccccccccccccccccccCcceEeecccCcccccccCCceEEeeeecccccCCcccceeEEEEEecCCCCCCCcccCCC
Confidence                   000       000110             01122333333 22   123467788889999999988888889


Q ss_pred             ceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000          201 QHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK  252 (259)
Q Consensus       201 eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k  252 (259)
                      ++.+|||+|++.+.+ |+++..+++||++++|+|++|+|+|+|+.. +++++.
T Consensus       271 ~e~~~vleG~~~~~i~~~~~~~l~~GD~~~vP~g~~h~~~~~~~~~-~~~~~~  322 (348)
T d1juha_         271 ACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFS-KVLFVS  322 (348)
T ss_dssp             CEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSSE-EEEEEE
T ss_pred             CEEEEEEeceEEEEeCCcceEEecCCCEEEECCCCcEEEEeCCCCc-EEEEEE
Confidence            999999999999999 568899999999999999999999999865 655553

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=7.1e-21  Score=174.80  Aligned_cols=192  Identities=17%  Similarity=0.206  Sum_probs=138.4

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE--EEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER  135 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~--~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~  135 (259)
                      +.+....++|.||+..++|.|...|+.||++|++.+++  .+|+.  ..|++||.++||+|..|.+.| +..++++.+..
T Consensus        70 ~~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~  149 (372)
T d1j58a_          70 ENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFD  149 (372)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEES
T ss_pred             hhhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCEEEEEeCCCCcEEEEEEC
Confidence            36888899999999988886666799999999999987  23554  469999999999999999999 66788877643


Q ss_pred             eccccCC-----------------------------------------CCccee----------------eccCCCCCCc
Q 025000          136 RYASLEN-----------------------------------------HITEQI----------------VGSTDKQPLL  158 (259)
Q Consensus       136 ~y~p~~g-----------------------------------------~~p~~~----------------v~~~~di~~~  158 (259)
                      --.+...                                         ..|..+                ..+..+-++.
T Consensus       150 ~~~~~~~~~f~~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~  229 (372)
T d1j58a_         150 DGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPI  229 (372)
T ss_dssp             CTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCE
T ss_pred             CCCcccccceeeccccccCCHHHHHHhhCCCHHHHhhccccccccccccCCCcchhhhccCCCCCCCCcceeeccccCCc
Confidence            2111110                                         000000                0000001111


Q ss_pred             ccCCceEEEEEeeCCCC--CcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCC-----EEEEccCCcEEEe
Q 025000          159 ETPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGD-----SWYPVQAGDVLWM  230 (259)
Q Consensus       159 ~~~g~~~~~~~l~p~~~--~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g-----~~~~v~~GD~i~~  230 (259)
                      ...||.  .+.+.+++.  ...+.+.+++|+||+.... |-|. .+|.+|||+|+|++.+.+     ..+++++||++|+
T Consensus       230 ~~~gG~--~~~~d~~~fp~~~~is~~~~~l~PG~~~~~-H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~i  306 (372)
T d1j58a_         230 ESEGGK--VYIADSTNFKVSKTIASALVTVEPGAMREL-HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV  306 (372)
T ss_dssp             ECSSEE--EEEESTTTSTTCCSCEEEEEEECTTCEEEE-EECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred             ccCCcc--EEEeccccCCccCceeEEEEEECCCcccCC-CCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEE
Confidence            112333  344555543  2478999999999999986 5665 568999999999988743     4689999999999


Q ss_pred             CCCCceeEEeCCCccEEEEEEeecC
Q 025000          231 APFVPQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       231 ~~~~~H~~~n~G~e~~~fi~~k~~n  255 (259)
                      |.|+.|.++|+|+|+++||..-+-+
T Consensus       307 P~g~~H~i~N~g~e~l~~l~vf~s~  331 (372)
T d1j58a_         307 PFAMGHYVENIGDEPLVFLEIFKDD  331 (372)
T ss_dssp             CTTCBEEEEECSSSCEEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCEEEEEEECCC
Confidence            9999999999999999999754433

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.86  E-value=2.5e-20  Score=170.16  Aligned_cols=202  Identities=16%  Similarity=0.194  Sum_probs=144.0

Q ss_pred             eEEEEecCCCC------CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEE-EEcCCcEEEEeCCcEEEeCCCCcEEE
Q 025000           50 LGAYLITPAMG------SHFVMYLANMQENARSALPPHDVERFIFVVQGSAML-TNASGVSSKLMVDSYTYLPPNFAHSL  122 (259)
Q Consensus        50 ~~~~l~sp~~g------~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v-~v~~ge~~~L~~Gd~i~~p~~~~H~~  122 (259)
                      ++-+|+.|..+      ..+...+..|.||+..+.|.|..+++.|||+|+... .+ +|+...+++||++++|++..|..
T Consensus        66 r~~~l~np~~~~~~~~t~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v-~ge~~~~~~GD~~~~P~~~~H~h  144 (355)
T d3bu7a1          66 RVVYLRNPQRKDVSAACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHKVELGANDFVLTPNGTWHEH  144 (355)
T ss_dssp             CCEECCCGGGGGGTCSBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEEEEECTTCEEEECTTCCEEE
T ss_pred             eEEEeeCCCCCCCCCcCchhhhheEeeCCCCcCcccccccceeEEEEECCcEEEEE-CCEEEEeeCCCEEEeCCCceEee
Confidence            34455555432      357888899999999999989999999999999865 46 99999999999999999999999


Q ss_pred             Ee-CCeEEEEEEEEecccc------------CCC------------------CcceeeccCC--CC-----CCcc-----
Q 025000          123 RA-EGSATLVVFERRYASL------------ENH------------------ITEQIVGSTD--KQ-----PLLE-----  159 (259)
Q Consensus       123 ~N-~~~a~~l~v~~~y~p~------------~g~------------------~p~~~v~~~~--di-----~~~~-----  159 (259)
                      .| ++...++|+.-...|+            +..                  .+.......+  ..     |+.+     
T Consensus       145 ~n~~~~~~~~~l~~~D~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al  224 (355)
T d3bu7a1         145 GILESGTECIWQDGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEAL  224 (355)
T ss_dssp             EECTTCCCEEEEEEECHHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHH
T ss_pred             ecCCCCCcEEEEEecchHHHhhccceecccCchhcccccCCCccchhhhcccccccccccCCcccCcccccccccchHHH
Confidence            99 3333344432111111            000                  0000000000  00     1100     


Q ss_pred             ---------cCCceEEEEEeeCCCC---CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcE
Q 025000          160 ---------TPGEVFQLRKLLPQAV---PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDV  227 (259)
Q Consensus       160 ---------~~g~~~~~~~l~p~~~---~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~  227 (259)
                               .+..++.++...|...   ...+.+....|+||..... |.|..++.+||++|+|.+.+||+.+++++||+
T Consensus       225 ~~~~~~~~~~~~~g~~l~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~-hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv  303 (355)
T d3bu7a1         225 LNYAKASDGSPYDGLILRYTNPQTGGHPMLTMGASMQMLRPGEHTKA-HRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDI  303 (355)
T ss_dssp             HHHHTTCCCBTTTBEEEEECCTTTSSCSSSSCEEEEEEECTTCBCCC-EEESSCEEEEEEECCEEEEETTEEEEECTTCE
T ss_pred             HHHHhcCCCCCCCceEEEeccccccCCCcceeeEEEEEECCCCccCC-cCccCcEEEEEEECcEEEEECCEEEEeeCCCE
Confidence                     1123444555556543   2467888889999999986 78889999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeCCCccEEEE-EEee
Q 025000          228 LWMAPFVPQWYAALGKTRTRYL-LYKD  253 (259)
Q Consensus       228 i~~~~~~~H~~~n~G~e~~~fi-~~k~  253 (259)
                      +++|+++.|++.|+|+++..|| .+.|
T Consensus       304 ~~vP~~~~h~~~N~s~~e~~~Lf~~~D  330 (355)
T d3bu7a1         304 FCVPAWTWHEHCNTQERDDACLFSFND  330 (355)
T ss_dssp             EEECTTCCEEEEECCSSCCEEEEEEES
T ss_pred             EEeCCCCcEEeecCCCCCcEEEEEecC
Confidence            9999999999999998765555 4544

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.83  E-value=5e-19  Score=161.24  Aligned_cols=202  Identities=12%  Similarity=0.106  Sum_probs=144.7

Q ss_pred             ceEEEEecCCCC------CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEE
Q 025000           49 TLGAYLITPAMG------SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL  122 (259)
Q Consensus        49 ~~~~~l~sp~~g------~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~  122 (259)
                      .++-+|+.|..+      ..+...+..|.||+..+.|.|..+++.|||+|+..+++.+|+...+++||.+++|++..|.+
T Consensus        67 rr~~~l~np~~~~~~~~t~~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~g~~~~~~~GD~~~~P~~~~H~~  146 (351)
T d2phda1          67 RRALGLANPGLGGNAYISPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGH  146 (351)
T ss_dssp             TCEEEECCTTSTTCCCSSSSCEEEEEEECTTCEEEEEEESSCEEEEEEECEEEEEEETTEEEEEETTCEEEECTTCCEEE
T ss_pred             eeEEEeecCCCCCccccCchhhhheEEECCCCcCCccccccceeEEEEECCcEEEEECCEEEEEeCCCEEEeCCCceEEE
Confidence            356677777653      35777888999999999998899999999999986543399999999999999999999999


Q ss_pred             Ee--CCeEEEEEEEEe----c------cccC-CC----Ccc------------ee-eccCCC--------CCCcc-----
Q 025000          123 RA--EGSATLVVFERR----Y------ASLE-NH----ITE------------QI-VGSTDK--------QPLLE-----  159 (259)
Q Consensus       123 ~N--~~~a~~l~v~~~----y------~p~~-g~----~p~------------~~-v~~~~d--------i~~~~-----  159 (259)
                      .|  ++++.++.+...    |      ++.+ ..    .|.            .. +....+        .++..     
T Consensus       147 ~n~~d~~~~~l~~~d~pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~sp~~~yp~~~~~~al  226 (351)
T d2phda1         147 MNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRAL  226 (351)
T ss_dssp             EECSSSCEEEEEEECHHHHHHTTCCCEEECCC--CCCCCCSSCHHHHHHCSTTEEEGGGCSCCSSCSCSEECHHHHHHHH
T ss_pred             EEcCCCCEEEEEeecCchhhhcccccccccccccccccCCccchhhhhccccccCcccccccccCCCcccCchHHHHhhh
Confidence            99  456777765321    0      0000 00    000            00 000000        01000     


Q ss_pred             ------------c--CCceEEEEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEc
Q 025000          160 ------------T--PGEVFQLRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPV  222 (259)
Q Consensus       160 ------------~--~g~~~~~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v  222 (259)
                                  .  .++...++...|.+.+   ..+.+....|+||..... |.|..++.+||++|+|.+.+||+....
T Consensus       227 ~~~~~~~~~~~~~~~~~g~~~l~yvnp~tg~~~~~t~~~~~~~l~pG~~~~~-hrh~~~~v~~vi~G~g~~~i~~~~~~~  305 (351)
T d2phda1         227 TEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETAT-RNEVGSTVFQVFEGAGAVVMNGETTKL  305 (351)
T ss_dssp             HHHHHHHHTTCSCSSBTTEEEEEEBCTTTSSBSBTTBEEEEEEECTTCBCCC-EEESSCEEEEEEESCEEEEETTEEEEE
T ss_pred             hhhhhcccccccccccCcceeEEEeccccCCCcCCcceEEEEEecCCCcCCC-ccccCcEEEEEEeCcEEEEECCEEEEE
Confidence                        0  1133344445565433   467788888999999875 778888999999999999999999999


Q ss_pred             cCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          223 QAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      ++||++++|++++|++.|.++  ...|.+.|
T Consensus       306 ~~gDvf~vP~~~~h~~~n~~~--~~Lf~~~D  334 (351)
T d2phda1         306 EKGDMFVVPSWVPWSLQAETQ--FDLFRFSD  334 (351)
T ss_dssp             CTTCEEEECTTCCEEEEESSC--EEEEEEES
T ss_pred             cCCCEEEeCCCCcEEEecCCC--eEEEEECC
Confidence            999999999999999999754  55566655

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=6.2e-20  Score=141.36  Aligned_cols=103  Identities=14%  Similarity=0.193  Sum_probs=88.9

Q ss_pred             eeccCCCCCCcccCC---ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccC
Q 025000          148 IVGSTDKQPLLETPG---EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQA  224 (259)
Q Consensus       148 ~v~~~~di~~~~~~g---~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~  224 (259)
                      ++.+..|++++....   .++..+.|+..+.+..+.|+.++|+||+.++. |+|..+|.+|||+|++.+.++|+++.+++
T Consensus         2 i~~r~~~v~~~~i~~~~~~G~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~-H~H~~~e~~~vl~G~~~~~~~~~~~~l~~   80 (114)
T d1vj2a_           2 ILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDR-HSHPWEHEIFVLKGKLTVLKEQGEETVEE   80 (114)
T ss_dssp             EEEEGGGSCCEEECSSSEEEEEEEEEECTTTCSSEEEEEEEEEEEEEEEE-ECCSSCEEEEEEESEEEEECSSCEEEEET
T ss_pred             EEEEhhhCCceeccccCCCCEEEEEEeCCCCCCceEEEEEEECCCCCCCc-eECCCcEEEEEEEceeEEEEeeeeeEEec
Confidence            445566777766532   45677788876666778899999999999997 67778899999999999999999999999


Q ss_pred             CcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          225 GDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       225 GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      ||++|+++|++|++.|.|+++++|||.
T Consensus        81 Gd~~~ip~~~~H~~~n~~~~~~~~l~i  107 (114)
T d1vj2a_          81 GFYIFVEPNEIHGFRNDTDSEVEFLCL  107 (114)
T ss_dssp             TEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CeEEEEcCCCeEEEEeCCCCCEEEEEE
Confidence            999999999999999999999999996

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.7e-18  Score=133.51  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=76.1

Q ss_pred             ceEEEEEeeC-CCC-CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEe
Q 025000          163 EVFQLRKLLP-QAV-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       163 ~~~~~~~l~p-~~~-~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      |.+..+.++. ++. +..+.+..++|+||+.++.|.|+..+|.+|||+|++.+.++|+++++++||++++++|++|+++|
T Consensus        21 G~~~~~~l~~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~N  100 (115)
T d1o4ta_          21 GEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIEN  100 (115)
T ss_dssp             SEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEEEEEC
T ss_pred             cEEEEEEecCccccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEcCeeEEeeccEEEEECCCCeEEEEE
Confidence            4556666664 444 35677889999999999985544577999999999999999999999999999999999999999


Q ss_pred             CCCccEEEEE
Q 025000          241 LGKTRTRYLL  250 (259)
Q Consensus       241 ~G~e~~~fi~  250 (259)
                      +|++|++||+
T Consensus       101 ~g~~~~~~l~  110 (115)
T d1o4ta_         101 TGNTDLEFLA  110 (115)
T ss_dssp             CSSSCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999999997

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=1.9e-17  Score=124.38  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             CCCCCcceEEEEecCCCCCcEEEEEEEecCCCcC--CCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcE
Q 025000           43 LPEWTNTLGAYLITPAMGSHFVMYLANMQENARS--ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH  120 (259)
Q Consensus        43 lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~--~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H  120 (259)
                      +|+-.+..++.|.......+|++++++++||+..  ..|.|+.+|++||++|++++.+ ++++++|++||+++||++.+|
T Consensus         2 f~~d~~~~~~~l~p~~~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~GD~~~~~~~~~H   80 (99)
T d1y9qa2           2 FPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQWHELQQGEHIRFFSDQPH   80 (99)
T ss_dssp             CTTCTTEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-TTEEEEECTTCEEEEECSSSE
T ss_pred             cCCCCCeEEEEEecCCCcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEe-cceEEEecCCCEEEECCCCeE
Confidence            3444555666666445567899999999999866  5566888999999999999999 999999999999999999999


Q ss_pred             EEEe--CCeEEEEEEE
Q 025000          121 SLRA--EGSATLVVFE  134 (259)
Q Consensus       121 ~~~N--~~~a~~l~v~  134 (259)
                      +++|  ++++.++++.
T Consensus        81 ~~~n~~~~~~~~~vi~   96 (99)
T d1y9qa2          81 GYAAVTEKAVFQNIVA   96 (99)
T ss_dssp             EEEESSSCEEEEEEEE
T ss_pred             EEEeCCccCEEEEEEe
Confidence            9999  5677776763

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.70  E-value=4.1e-17  Score=122.46  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCc-ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV-KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~-~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      ++++++.|.|.+....+.+..++|+||+.... .|+|..+|.+|||+|++.+.+||+++.+++||+++++++++|+++|.
T Consensus         6 ~~~~~~~l~p~~~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~   85 (99)
T d1y9qa2           6 LNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAV   85 (99)
T ss_dssp             TTEEEEEEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEES
T ss_pred             CCeEEEEEecCCCcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEecceEEEecCCCEEEECCCCeEEEEeC
Confidence            56788889987767788899999999987533 35678899999999999999999999999999999999999999999


Q ss_pred             CCccEEEEE
Q 025000          242 GKTRTRYLL  250 (259)
Q Consensus       242 G~e~~~fi~  250 (259)
                      |++++.+++
T Consensus        86 ~~~~~~~~v   94 (99)
T d1y9qa2          86 TEKAVFQNI   94 (99)
T ss_dssp             SSCEEEEEE
T ss_pred             CccCEEEEE
Confidence            999987755

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=7.7e-17  Score=127.75  Aligned_cols=90  Identities=20%  Similarity=0.288  Sum_probs=79.6

Q ss_pred             ceEEEEEeeCC-CCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCceeEEe
Q 025000          163 EVFQLRKLLPQ-AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       163 ~~~~~~~l~p~-~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      |.+.++.|++. +...++.+.+++|+||+.++. |+|..++.+|||+|+|.+.+ |++++.+++||++|+++|++||..|
T Consensus        18 G~v~~~~L~~~~~~~~~~~~~~vtf~PG~~~~~-H~H~~~q~~~Vl~G~~~~~~~g~~~~~~~~Gd~v~ippg~~H~~~a   96 (134)
T d2f4pa1          18 GNVWVKMLVTDENGVFNTQVYDVVFEPGARTHW-HSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGA   96 (134)
T ss_dssp             SCEEEEEEECCTTCSSSCEEEEEEECTTCEECS-EECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEECTTCCEEEEE
T ss_pred             eeEEEeeccCCCCCCceeEEEEEEECCCCcCcc-ccCCCCEEEEEEeCEEEEEECCcceEEEcCCCeEEECCCCceECcc
Confidence            35678888854 455789999999999999997 78889999999999999977 5577999999999999999999999


Q ss_pred             CCCccEEEEEEee
Q 025000          241 LGKTRTRYLLYKD  253 (259)
Q Consensus       241 ~G~e~~~fi~~k~  253 (259)
                      +++++++||+.-.
T Consensus        97 ~~~~~~~~lai~~  109 (134)
T d2f4pa1          97 APDEELVHIGIST  109 (134)
T ss_dssp             BTTBCEEEEEEEC
T ss_pred             CCCCcEEEEEEEe
Confidence            9999999998753

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.68  E-value=1.7e-16  Score=129.13  Aligned_cols=107  Identities=12%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             ceeeccCCCCCCcccCCceEEEEEeeCC-C-CCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC------
Q 025000          146 EQIVGSTDKQPLLETPGEVFQLRKLLPQ-A-VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD------  217 (259)
Q Consensus       146 ~~~v~~~~di~~~~~~g~~~~~~~l~p~-~-~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g------  217 (259)
                      ..+|.++++++...+...++..+.+... . ....+.+.+.+|+||+.++. |+|..+|.+|||+|+|.+.++|      
T Consensus         6 ~~~vr~i~~~~~~~~g~~g~~~~~~~~~~~~g~~~i~v~~~~l~PG~~~~~-H~H~~~e~~~Vl~G~g~~~i~~~~~~~~   84 (160)
T d1lr5a_           6 NSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPI-HRHSCEEVFTVLKGKGTLLMGSSSLKYP   84 (160)
T ss_dssp             CCSEEEGGGSCCBCTTCTTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCE-EEESSCEEEEEEECCEEEEECCSSSSSC
T ss_pred             chhhcchhhCcccccCCCCceEEEeecccCCCccEEEEEEEEECCCccccc-eeccccEEEEEEeeeEEEEECCcccccc
Confidence            4568889998888875545455555542 3 34678899999999999997 5888999999999999999998      


Q ss_pred             ---EEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEEEee
Q 025000          218 ---SWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYKD  253 (259)
Q Consensus       218 ---~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k~  253 (259)
                         +++++++||++++|+|++|++.|+|+ |++++|+..+
T Consensus        85 ~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~  124 (160)
T d1lr5a_          85 GQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (160)
T ss_dssp             CSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             ccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEEC
Confidence               78999999999999999999999997 8999998764

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=1.1e-16  Score=122.19  Aligned_cols=84  Identities=13%  Similarity=0.221  Sum_probs=73.1

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCE-EEEccCCcEEEeCCCCceeEEeCCCc
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS-WYPVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~-~~~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      ..+.|+..+   ++.+..++|+||..+|. |.|..++.+|||+|+|.++++|+ .+++++||++++++|++|+++|.|++
T Consensus        16 ~~~~l~~~~---~~~v~~~~l~pG~~~p~-H~H~~~e~~~Vl~G~~~~~v~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e   91 (108)
T d2b8ma1          16 VVEKLVNTE---HVQINHIVLPRGEQMPK-HYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSD   91 (108)
T ss_dssp             EEEEEEECS---SCEEEEEEEETTCBCCC-EECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSS
T ss_pred             EEEEEEcCC---CEEEEEEEECCCCcChh-hcccccEEEEEEeeeEEEEEecccEEEeecceEeeccCCceEEEEcCCCC
Confidence            445555443   36788999999999997 56678889999999999999995 69999999999999999999999999


Q ss_pred             cEEEEEEee
Q 025000          245 RTRYLLYKD  253 (259)
Q Consensus       245 ~~~fi~~k~  253 (259)
                      +++||+.+.
T Consensus        92 ~l~~l~v~~  100 (108)
T d2b8ma1          92 ILEFFVVKA  100 (108)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEEEEC
Confidence            999999864

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=1.3e-16  Score=122.45  Aligned_cols=86  Identities=20%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--C
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--E  125 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~  125 (259)
                      +...++|+++..+.+|.+.+++++||+..+.|.|..+|++||++|++++++ +|+++.|++||++++|+|.+|+++|  +
T Consensus        21 G~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~n~~~   99 (114)
T d1vj2a_          21 GVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQGEETVEEGFYIFVEPNEIHGFRNDTD   99 (114)
T ss_dssp             EEEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred             CEEEEEEeCCCCCCceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEEE-eeeeeEEecCeEEEEcCCCeEEEEeCCC
Confidence            456778888887888999999999999998888888999999999999999 9999999999999999999999999  6


Q ss_pred             CeEEEEEEE
Q 025000          126 GSATLVVFE  134 (259)
Q Consensus       126 ~~a~~l~v~  134 (259)
                      +++++|++.
T Consensus       100 ~~~~~l~ii  108 (114)
T d1vj2a_         100 SEVEFLCLI  108 (114)
T ss_dssp             SCEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            689999985

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=2.3e-16  Score=118.52  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      ++.+.+++++||+.++.|.|+..+|.+|||+|++.+.++|+++.+++||++++++|++|+++|.|+++++||..
T Consensus        27 ~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence            46788999999999997544456799999999999999999999999999999999999999999999999864

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.60  E-value=4.7e-15  Score=115.35  Aligned_cols=85  Identities=16%  Similarity=0.298  Sum_probs=72.1

Q ss_pred             eEEEEecCCCCCcEEEEEEEecCCCcCCC---CCCCceEEEEEEECEEEEEEc---CCcEEEEeCCcEEEeCCCCcEEEE
Q 025000           50 LGAYLITPAMGSHFVMYLANMQENARSAL---PPHDVERFIFVVQGSAMLTNA---SGVSSKLMVDSYTYLPPNFAHSLR  123 (259)
Q Consensus        50 ~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~---h~~~~Eef~yVl~G~l~v~v~---~ge~~~L~~Gd~i~~p~~~~H~~~  123 (259)
                      .+..|+.+...+.+.++++++.|++..+.   +.|.+|||+|||+|++++.++   ++++++|++||++|||++++|+++
T Consensus        28 ~y~~L~~~~~~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~  107 (122)
T d2bnma2          28 VYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFT  107 (122)
T ss_dssp             EEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEE
T ss_pred             EEEeccCCcCCCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEE
Confidence            56677777778899999999999986532   258899999999999999982   246899999999999999999999


Q ss_pred             e---CCeEEEEEEE
Q 025000          124 A---EGSATLVVFE  134 (259)
Q Consensus       124 N---~~~a~~l~v~  134 (259)
                      |   ++++++|+|.
T Consensus       108 n~~g~~~a~~l~Vt  121 (122)
T d2bnma2         108 AAKGTGSAKLIAVN  121 (122)
T ss_dssp             ESTTSCCEEEEEEE
T ss_pred             cCCCCccEEEEEEE
Confidence            9   3478999874

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=1.3e-14  Score=110.28  Aligned_cols=75  Identities=11%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCc-EEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEe
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGV-SSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  136 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge-~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~  136 (259)
                      .++.+.++.++||+..+.|.|..++++|||+|++++++ +|+ ++.|++||++++|+|.+|+++|  +++++++++..|
T Consensus        24 ~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v-~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~P  101 (108)
T d2b8ma1          24 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAP  101 (108)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE-TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             CCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEEEE-ecccEEEeecceEeeccCCceEEEEcCCCCcEEEEEEECC
Confidence            46888999999999999998889999999999999999 875 6899999999999999999999  568899988544

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.54  E-value=2.8e-14  Score=108.85  Aligned_cols=86  Identities=16%  Similarity=0.256  Sum_probs=72.6

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG  242 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G  242 (259)
                      +.+..+.|+..+   ...+..++|+||..++. |+|..++.+|||+|++.+.++|+++++++||++++++|.+|+++|.+
T Consensus        24 ~~~~~~~l~~~~---~~~i~~~~~~~G~~~~~-H~h~~~~~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~a~~   99 (112)
T d1yhfa1          24 DQMLSRTLVQRQ---DLGITVFSLDKGQEIGR-HSSPGDAMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVE   99 (112)
T ss_dssp             TCEEEEEEEEET---TEEEEEEEECTTCEEEE-ECCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTSCEEEEESS
T ss_pred             CCEEEEEEEECC---CcEEEEEEECCCCCcce-EECCCCEEEEEEeCEEEEEEccEEEEecCCEEEEcCCCCeEEeEECC
Confidence            444556665432   35577899999999996 77888999999999999999999999999999999999999999998


Q ss_pred             CccEEEEEEe
Q 025000          243 KTRTRYLLYK  252 (259)
Q Consensus       243 ~e~~~fi~~k  252 (259)
                      +..+..++.|
T Consensus       100 ~~~~l~~vi~  109 (112)
T d1yhfa1         100 AFQMLLVVVK  109 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CcEEEEEEEC
Confidence            7777766665

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.53  E-value=1.8e-14  Score=124.80  Aligned_cols=92  Identities=17%  Similarity=0.157  Sum_probs=80.7

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcc-eeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~-~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      +++..+.|.+.+++..+.+-+++++||+....+ |+|..||.+|||+|++.+++||+.+.+++||++|+++|++|++.|.
T Consensus        32 ~~~~~~~L~sp~~Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~N~  111 (250)
T d1sefa_          32 ENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANA  111 (250)
T ss_dssp             EEEEEEECSCGGGTCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSCEEEEETTEEEEECTTSCCEEEES
T ss_pred             CcEEEEEEcCcccCCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEECCEEEEEcCCCEEEEcCCCcEEEEEC
Confidence            566777787666677788889999999986543 4567788899999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEeec
Q 025000          242 GKTRTRYLLYKDV  254 (259)
Q Consensus       242 G~e~~~fi~~k~~  254 (259)
                      |+++++||++|..
T Consensus       112 ~~~~~~~l~v~~~  124 (250)
T d1sefa_         112 QEADTEVFLYKKR  124 (250)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCCCEEEEEEEEe
Confidence            9999999999764

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=2.5e-14  Score=107.08  Aligned_cols=75  Identities=13%  Similarity=0.251  Sum_probs=67.5

Q ss_pred             CcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEe
Q 025000           61 SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR  136 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~  136 (259)
                      .++.+.+++++||+..+.|.| ..+|++||++|++++++ +|+++.|++||++++|+|.+|+++|  +++++++++..|
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P  103 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-GEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP  103 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-TTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE-eeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECC
Confidence            478889999999999988865 56899999999999999 9999999999999999999999999  568999988544

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=6.7e-14  Score=107.17  Aligned_cols=91  Identities=9%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             CCCCCcc-eEEEEecCCC--CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCC
Q 025000           43 LPEWTNT-LGAYLITPAM--GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF  118 (259)
Q Consensus        43 lp~~~~~-~~~~l~sp~~--g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~  118 (259)
                      +.+.++. ....+.....  +..+....++++||+..+.|.|. .+|++||++|++++++ +|+++.|++||++++|+|.
T Consensus        16 ~~Gg~G~~~~~~l~~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~g~   94 (115)
T d1o4ta_          16 MRGGKGEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-NGKDVPIKAGDVCFTDSGE   94 (115)
T ss_dssp             GGGCSSEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEECTTC
T ss_pred             cCCCccEEEEEEecCccccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE-cCeeEEeeccEEEEECCCC
Confidence            3344443 3334454432  44555668899999998888664 6899999999999999 9999999999999999999


Q ss_pred             cEEEEe--CCeEEEEEEE
Q 025000          119 AHSLRA--EGSATLVVFE  134 (259)
Q Consensus       119 ~H~~~N--~~~a~~l~v~  134 (259)
                      +|+++|  +++++++.+.
T Consensus        95 ~H~~~N~g~~~~~~l~I~  112 (115)
T d1o4ta_          95 SHSIENTGNTDLEFLAVI  112 (115)
T ss_dssp             EEEEECCSSSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEEE
Confidence            999999  5688888774

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.49  E-value=1.2e-13  Score=119.23  Aligned_cols=93  Identities=8%  Similarity=0.116  Sum_probs=77.9

Q ss_pred             CCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEE
Q 025000           43 LPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS  121 (259)
Q Consensus        43 lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~  121 (259)
                      .+..++...+.+.....+..|.+.+++++||+..+.| +|..||++|||+|++.+.+ +|+.+.|++||++|+|++++|+
T Consensus       145 ~~~~~~~~~r~l~p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i-~~~~~~v~~GD~i~~~~~~~H~  223 (245)
T d1sfna_         145 FEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENYYPVTAGDIIWMGAHCPQW  223 (245)
T ss_dssp             TTSCTTEEEEECSCCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTTCCEE
T ss_pred             CccccceEEEecCCcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE-CCEEEEecCCCEEEECCCCCEe
Confidence            3444444444444445577899999999999988876 5889999999999999999 9999999999999999999999


Q ss_pred             EEe--CCeEEEEEEEEe
Q 025000          122 LRA--EGSATLVVFERR  136 (259)
Q Consensus       122 ~~N--~~~a~~l~v~~~  136 (259)
                      ++|  ++++++|+++..
T Consensus       224 ~~n~g~~~~~~l~~k~~  240 (245)
T d1sfna_         224 YGALGRNWSKYLLYKDM  240 (245)
T ss_dssp             EEEESSSCEEEEEEEEC
T ss_pred             eEeCCCCCEEEEEEecC
Confidence            999  678999987654

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.49  E-value=6.5e-14  Score=113.54  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=75.1

Q ss_pred             CcceEEEEecCCC-C-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEEeCCcEEEeC
Q 025000           47 TNTLGAYLITPAM-G-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLP  115 (259)
Q Consensus        47 ~~~~~~~l~sp~~-g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g---------e~~~L~~Gd~i~~p  115 (259)
                      .+.....+++... | ..+++++.+++||+.++.|.|..+|++|||+|++++++ +|         +++.|++||++++|
T Consensus        23 ~g~~~~~~~~~~~~g~~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i-~~~~~~~~~~~~~~~l~~Gd~~~iP  101 (160)
T d1lr5a_          23 EGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM-GSSSLKYPGQPQEIPFFQNTTFSIP  101 (160)
T ss_dssp             TTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEE-CCSSSSSCCSCEEEEECTTEEEEEC
T ss_pred             CCceEEEeecccCCCccEEEEEEEEECCCccccceeccccEEEEEEeeeEEEEE-CCccccccccceEEEecCCCEEEeC
Confidence            3445555665543 5 57999999999999998888889999999999999999 76         67899999999999


Q ss_pred             CCCcEEEEe--C-CeEEEEEEEEe
Q 025000          116 PNFAHSLRA--E-GSATLVVFERR  136 (259)
Q Consensus       116 ~~~~H~~~N--~-~~a~~l~v~~~  136 (259)
                      +|.+|+++|  + +++++|++..+
T Consensus       102 ~~~~H~~~N~g~~E~l~~l~i~~~  125 (160)
T d1lr5a_         102 VNDPHQVWNSDEHEDLQVLVIISR  125 (160)
T ss_dssp             TTCCEEEECCCSSSCEEEEEEEES
T ss_pred             CCCcEEEEECCCCCCEEEEEEECC
Confidence            999999999  3 57899988643

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.3e-13  Score=119.41  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=78.9

Q ss_pred             ceEEEEEeeCCCCCcceEEEEEEecCCcccCcc-eeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~-~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      .++..+.|.+.+.+..+.+-.++++||+....+ |+|..||.+|||+|++.+.++|+.+.+++||++|++++++|++.|.
T Consensus        35 ~~~~~~~l~sp~~g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~N~  114 (253)
T d1rc6a_          35 ENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNA  114 (253)
T ss_dssp             EEEEEEECCCGGGTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCCCEEEEC
T ss_pred             CCeeEEEEeCcccCCceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEECCEEEEECCCCEEEECCCCCEEEEEC
Confidence            555667777766677888889999999886654 4456788899999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEee
Q 025000          242 GKTRTRYLLYKD  253 (259)
Q Consensus       242 G~e~~~fi~~k~  253 (259)
                      |+++++|+.+|.
T Consensus       115 ~~~~~~~l~v~~  126 (253)
T d1rc6a_         115 QAEDSQIFLYKR  126 (253)
T ss_dssp             SSSCEEEEEEEE
T ss_pred             CCCCEEEEEEEe
Confidence            999999999863

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.47  E-value=1.6e-13  Score=104.61  Aligned_cols=73  Identities=10%  Similarity=0.162  Sum_probs=67.0

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      .++.+.++.++||+..+.|.|..+|++||++|++++.+ +|+++.|++||++++|+|.+|+++|.++++++++.
T Consensus        35 ~~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~v  107 (112)
T d1yhfa1          35 QDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVV  107 (112)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTCEEEECTTSCEEEEESSCEEEEEEE
T ss_pred             CCcEEEEEEECCCCCcceEECCCCEEEEEEeCEEEEEE-ccEEEEecCCEEEEcCCCCeEEeEECCCcEEEEEE
Confidence            46777889999999988898889999999999999999 99999999999999999999999998888887764

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.46  E-value=1.7e-13  Score=120.28  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=78.9

Q ss_pred             cCC-ceEEEEEeeCCCCC--cceEEEEEEecCCcccCcc-eeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc
Q 025000          160 TPG-EVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       160 ~~g-~~~~~~~l~p~~~~--~~~~~~~~t~~PG~~~~~~-~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~  235 (259)
                      .++ .+++...|.....+  ..|.+.+++++||+....+ +++..|+.+|||+|++.+++||+++.+++||++|+++|++
T Consensus        44 lP~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~~g~~~~L~~Gd~~y~P~g~~  123 (273)
T d1sq4a_          44 LPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGAD  123 (273)
T ss_dssp             CTTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTTCC
T ss_pred             CCCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEECCEEEEecCCCEEEECCCCc
Confidence            344 45444455544444  5689999999999865543 4456789999999999999999999999999999999999


Q ss_pred             eeEEeCCCccEEEEEEeecC
Q 025000          236 QWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       236 H~~~n~G~e~~~fi~~k~~n  255 (259)
                      |++.|.|+++++|+++|...
T Consensus       124 h~~~N~g~~~a~~l~i~k~y  143 (273)
T d1sq4a_         124 YKVRNTTGQHTRFHWIRKHY  143 (273)
T ss_dssp             EEEECCSSSCEEEEEEEEEC
T ss_pred             EeeeecCCCCEEEEEEEecc
Confidence            99999999999999987543

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=9.5e-14  Score=108.45  Aligned_cols=83  Identities=11%  Similarity=0.081  Sum_probs=71.5

Q ss_pred             eEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000           50 LGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT  129 (259)
Q Consensus        50 ~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~  129 (259)
                      ....++.+..+..+.....+++||..  ++++..+|++|||+|++++++ +|+++.|++||+++||+|.+|+|+|.+.++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~E~~~vl~G~~~~~~-~g~~~~l~~Gd~~~~p~g~~h~~~~~~~~~  117 (128)
T d2pyta1          41 GLTDLVTEQDGSSMAAGFMQWDNAFF--PWTLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPTSVR  117 (128)
T ss_dssp             EEEEEECGGGTCSSEEEEEEEEEEEE--EEECSSEEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCCceEEEEEEECCCcc--ceeCCccEEEEEEEeEEEEEE-CCEEEEecCCCEEEECCCCEEEEEeCCCEE
Confidence            44566766667788889999998742  235788999999999999999 999999999999999999999999988899


Q ss_pred             EEEEEE
Q 025000          130 LVVFER  135 (259)
Q Consensus       130 ~l~v~~  135 (259)
                      ++++..
T Consensus       118 ~~~v~~  123 (128)
T d2pyta1         118 FLYVAW  123 (128)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            888864

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=1.3e-13  Score=107.56  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             eccCCCCCCcccCC---ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCC
Q 025000          149 VGSTDKQPLLETPG---EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAG  225 (259)
Q Consensus       149 v~~~~di~~~~~~g---~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~G  225 (259)
                      +.+.++++...+++   ..+..+.++..+....+.+..++++||.   .++||..+|.+|||+|++.+.++|+.+.+++|
T Consensus        21 vv~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~E~~~vl~G~~~~~~~g~~~~l~~G   97 (128)
T d2pyta1          21 VIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQWDNAF---FPWTLNYDEIDMVLEGELHVRHEGETMIAKAG   97 (128)
T ss_dssp             EECGGGCBCEECGGGTTSCCEEEEEECGGGTCSSEEEEEEEEEEE---EEEECSSEEEEEEEEEEEEEEETTEEEEEETT
T ss_pred             EEcCCcccceeecCCCCCceEEEEEEEcCCCCceEEEEEEECCCc---cceeCCccEEEEEEEeEEEEEECCEEEEecCC
Confidence            44566677666633   3445566665444556777788999986   35788899999999999999999999999999


Q ss_pred             cEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          226 DVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       226 D~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      |++|+|+|.+|.++|.++..+-|++|
T Consensus        98 d~~~~p~g~~h~~~~~~~~~~~~v~~  123 (128)
T d2pyta1          98 DVMFIPKGSSIEFGTPTSVRFLYVAW  123 (128)
T ss_dssp             CEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             CEEEECCCCEEEEEeCCCEEEEEEEC
Confidence            99999999999999987655555543

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.42  E-value=6.3e-13  Score=110.69  Aligned_cols=81  Identities=17%  Similarity=0.301  Sum_probs=67.0

Q ss_pred             CCCCCcceEEEEEEecCCcccC--------cceeeccceEEEEEEceEEEEeC-----CEEEEccCCcEEEeCCCCceeE
Q 025000          172 PQAVPFDFNIHIMDFQPGDFLN--------VKEVHYNQHGLLLLEGQGIYRLG-----DSWYPVQAGDVLWMAPFVPQWY  238 (259)
Q Consensus       172 p~~~~~~~~~~~~t~~PG~~~~--------~~~~H~~eh~~~il~G~g~~~~~-----g~~~~v~~GD~i~~~~~~~H~~  238 (259)
                      +.+...+..+.+.+++||...+        +|.|...+|.+|||+|+|.+.++     ++++++++||++++|+|+.|.+
T Consensus        60 ~~~~~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~  139 (190)
T d1x82a_          60 QEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRT  139 (190)
T ss_dssp             CCSCTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEE
T ss_pred             cCcCCCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEe
Confidence            4455578889999999996443        22223467999999999999984     3678999999999999999999


Q ss_pred             EeCCCccEEEEEEe
Q 025000          239 AALGKTRTRYLLYK  252 (259)
Q Consensus       239 ~n~G~e~~~fi~~k  252 (259)
                      .|+|+++|+||+.=
T Consensus       140 ~N~Gde~L~~l~v~  153 (190)
T d1x82a_         140 VNIGDEPFIFLAIY  153 (190)
T ss_dssp             EECSSSCEEEEEEE
T ss_pred             EECCCCCEEEEEEE
Confidence            99999999999864

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.8e-13  Score=120.41  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=70.5

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEE-EeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~  254 (259)
                      ..+.+.+.+|+||+.++. |.|..+|.+|||+|+|.+ .+||+.+++++||++++|+|++|++.|+|++++.||.+.|.
T Consensus        52 ~~l~~~~~~l~PG~~~~~-H~H~~~e~~~vl~G~g~~t~~~~~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~d~  129 (308)
T d2d40a1          52 ATLYAGLQLIMPGEVAPS-HRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL  129 (308)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred             ccceeeeEEECCCCcccc-ccCchhheEEEEEeeEEEEEecCEEEEecCCCEEEeCCCceEEeEECCCCCEEEEEEecc
Confidence            467889999999999997 677788999999999987 57999999999999999999999999999999999998763

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1.6e-12  Score=102.54  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             eEEEEecCCCC-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC-cEEEEeCCcEEEeCCCCcEEEEe--C
Q 025000           50 LGAYLITPAMG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG-VSSKLMVDSYTYLPPNFAHSLRA--E  125 (259)
Q Consensus        50 ~~~~l~sp~~g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g-e~~~L~~Gd~i~~p~~~~H~~~N--~  125 (259)
                      ....|+++..+ ..+.+..++++||+.+..|.|..++++|||+|++.+.+ +| +.+.|++||++++|+|++|...|  +
T Consensus        21 ~~~~L~~~~~~~~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~-~g~~~~~~~~Gd~v~ippg~~H~~~a~~~   99 (134)
T d2f4pa1          21 WVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-RGKPARILKKGDVVEIPPNVVHWHGAAPD   99 (134)
T ss_dssp             EEEEEECCTTCSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE-TTSCCEEEETTCEEEECTTCCEEEEEBTT
T ss_pred             EEeeccCCCCCCceeEEEEEEECCCCcCccccCCCCEEEEEEeCEEEEEE-CCcceEEEcCCCeEEECCCCceECccCCC
Confidence            45567777665 58999999999999999998889999999999999988 55 56899999999999999999887  5


Q ss_pred             CeEEEEEEE
Q 025000          126 GSATLVVFE  134 (259)
Q Consensus       126 ~~a~~l~v~  134 (259)
                      ++++.|.+.
T Consensus       100 ~~~~~lai~  108 (134)
T d2f4pa1         100 EELVHIGIS  108 (134)
T ss_dssp             BCEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            577777763

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.33  E-value=8.7e-12  Score=96.47  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             EEEEEeeCCCCCcceEEEEEEecCCcccC--cceeeccceEEEEEEceEEEEeC----CEEEEccCCcEEEeCCCCceeE
Q 025000          165 FQLRKLLPQAVPFDFNIHIMDFQPGDFLN--VKEVHYNQHGLLLLEGQGIYRLG----DSWYPVQAGDVLWMAPFVPQWY  238 (259)
Q Consensus       165 ~~~~~l~p~~~~~~~~~~~~t~~PG~~~~--~~~~H~~eh~~~il~G~g~~~~~----g~~~~v~~GD~i~~~~~~~H~~  238 (259)
                      ...+.|.+......|..-+++++|++...  .+++|..||.+|||+|+..+.++    ++++.+++||.++++++++|++
T Consensus        27 y~y~~L~~~~~~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~  106 (122)
T d2bnma2          27 YVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAF  106 (122)
T ss_dssp             EEEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEE
T ss_pred             EEEEeccCCcCCCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEE
Confidence            34556666666677777789999998653  34567888999999999999874    5899999999999999999999


Q ss_pred             EeC-CCccEEEEE
Q 025000          239 AAL-GKTRTRYLL  250 (259)
Q Consensus       239 ~n~-G~e~~~fi~  250 (259)
                      .|. |++++++|+
T Consensus       107 ~n~~g~~~a~~l~  119 (122)
T d2bnma2         107 TAAKGTGSAKLIA  119 (122)
T ss_dssp             EESTTSCCEEEEE
T ss_pred             EcCCCCccEEEEE
Confidence            996 899998876

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=1.3e-11  Score=110.09  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=69.3

Q ss_pred             EEEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          167 LRKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       167 ~~~l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      .+.+. +.+.+..+.+..++++||+..+.|.|+..+|.+|||+|++.++++|+++.+++||+++++++++|++.|.|++ 
T Consensus        29 ~~~~~~~~~t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-  107 (330)
T d1y3ta1          29 ATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSHR-  107 (330)
T ss_dssp             EEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECSTT-
T ss_pred             EEEEEeccCCCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEECCEEEEEcCCCEEEeCCCCeEEEEEcCCC-
Confidence            33443 4444556788899999999999755556779999999999999999999999999999999999999999985 


Q ss_pred             EEEEEE
Q 025000          246 TRYLLY  251 (259)
Q Consensus       246 ~~fi~~  251 (259)
                      ..+|+.
T Consensus       108 ~~~l~~  113 (330)
T d1y3ta1         108 TRLVSY  113 (330)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            455543

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.15  E-value=7.4e-11  Score=96.20  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=66.7

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k  252 (259)
                      ++.+..++++||+.+..| |+..++.+||++|+|++.+    +.+.+.+++||++++|+|.+|++.|+|+ +.++.+++.
T Consensus        43 ~~~v~~~~i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~  121 (170)
T d1uija1          43 DYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA  121 (170)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             heEEEEEEecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEec
Confidence            588999999999988764 5677899999999999988    6688999999999999999999999987 678888887


Q ss_pred             e
Q 025000          253 D  253 (259)
Q Consensus       253 ~  253 (259)
                      +
T Consensus       122 ~  122 (170)
T d1uija1         122 I  122 (170)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.12  E-value=1.2e-10  Score=105.01  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEE-EeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      ..+...+..|.||...+. |.|..++.+|||+|+|.+ .+||+..++++||++++|++++|++.|.|++++.+|.+-|
T Consensus        85 ~~l~~~~~~l~PGe~~~~-H~H~~~~~~~vi~G~g~~t~v~g~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~d  161 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPE-HRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLD  161 (351)
T ss_dssp             SSCEEEEEEECTTCEEEE-EEESSCEEEEEEECEEEEEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             chhhhheEEECCCCcCCc-cccccceeEEEEECCcEEEEECCEEEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEeec
Confidence            357778889999999997 788899999999999986 5699999999999999999999999999999999998765

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.10  E-value=1.6e-10  Score=96.78  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k  252 (259)
                      ++.+..++++||+.+-.| |+..++.+||++|+|++.+    +-+.+.+++||++++|+|.+||+.|+|+ ++|.++++.
T Consensus        39 ~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~  117 (203)
T d1uika1          39 DYRILEFNSKPNTLLLPH-HADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLA  117 (203)
T ss_dssp             TCEEEEEEECSSEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             ceEEEEEEecCCCccccc-cCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEe
Confidence            578889999999987764 5667799999999999887    4578999999999999999999999987 789999987


Q ss_pred             e
Q 025000          253 D  253 (259)
Q Consensus       253 ~  253 (259)
                      |
T Consensus       118 ~  118 (203)
T d1uika1         118 I  118 (203)
T ss_dssp             E
T ss_pred             c
Confidence            6

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.08  E-value=3e-10  Score=93.15  Aligned_cols=76  Identities=22%  Similarity=0.303  Sum_probs=66.4

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe----CCEEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEEEe
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL----GDSWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLLYK  252 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~----~g~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~~k  252 (259)
                      ++.+..++++||+.+..| |....+.+||++|+|++.+    +-+.+.+++||++++|+|.+|++.|+|+ ++|.++++.
T Consensus        40 ~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~  118 (178)
T d1dgwa_          40 DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  118 (178)
T ss_dssp             TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEEEecCCcccccc-cCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEe
Confidence            588889999999999865 4556689999999999987    3477899999999999999999999866 799999998


Q ss_pred             ec
Q 025000          253 DV  254 (259)
Q Consensus       253 ~~  254 (259)
                      |.
T Consensus       119 ~~  120 (178)
T d1dgwa_         119 IT  120 (178)
T ss_dssp             EC
T ss_pred             cC
Confidence            74

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.95  E-value=1.1e-09  Score=91.37  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             cceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCC------E--EEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGD------S--WYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g------~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                      -...+.+++|+||+..+. |.|. .+|.+||++|++.+.+.+      +  ...+++||++++|.|..|+.+|.|++++.
T Consensus        70 lglS~~rv~l~pgg~~~P-H~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~  148 (201)
T d2et1a1          70 LGVSMNRVDFAPGGTNPP-HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             SSCEEEEEEECTTCEEEE-EECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEE
T ss_pred             cceeEEEEEECCCCCcCC-cccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEE
Confidence            368889999999999996 7775 568899999999987733      2  57899999999999999999999999988


Q ss_pred             EEEE
Q 025000          248 YLLY  251 (259)
Q Consensus       248 fi~~  251 (259)
                      +|+.
T Consensus       149 ~i~~  152 (201)
T d2et1a1         149 MVVS  152 (201)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8863

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.95  E-value=1.8e-09  Score=97.43  Aligned_cols=77  Identities=16%  Similarity=0.062  Sum_probs=69.1

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEE-EeCCEEEEccCCcEEEeCCCCceeEEeC-CCccEEEEEEeec
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAAL-GKTRTRYLLYKDV  254 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~-G~e~~~fi~~k~~  254 (259)
                      ..+...+..+.||...+. |.|..++..|||+|+|.+ .+||+..++++||++++|++++|++.|. +++++.++.+.|.
T Consensus        83 ~~l~~~~q~l~PGe~~~~-HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D~  161 (355)
T d3bu7a1          83 GWLFSGIQTMKAGERAGA-HRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLDI  161 (355)
T ss_dssp             TTBEEEEEEECTTCBCCC-EEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEECH
T ss_pred             chhhhheEeeCCCCcCcc-cccccceeEEEEECCcEEEEECCEEEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEecch
Confidence            357778899999999996 788899999999999987 5899999999999999999999999996 5789999887775

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.91  E-value=2.4e-09  Score=96.01  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=64.0

Q ss_pred             EEEEee-CCCCCcceEEEEEEecCCcccCc-ceeec-cceEEEEEEceEEEEeC-----CEEEEccCCcEEEeCCCCcee
Q 025000          166 QLRKLL-PQAVPFDFNIHIMDFQPGDFLNV-KEVHY-NQHGLLLLEGQGIYRLG-----DSWYPVQAGDVLWMAPFVPQW  237 (259)
Q Consensus       166 ~~~~l~-p~~~~~~~~~~~~t~~PG~~~~~-~~~H~-~eh~~~il~G~g~~~~~-----g~~~~v~~GD~i~~~~~~~H~  237 (259)
                      ..+.++ ..+.+..+.+-.+++.||+..+. .|.|. .+|.+|||+|++.++++     +++..+++||++++|+|++|+
T Consensus        32 ~~~~~~~~~~t~g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~  111 (348)
T d1juha_          32 LYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHT  111 (348)
T ss_dssp             EEEEEECHHHHTTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEE
T ss_pred             EEEEEeccccCCCeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEe
Confidence            344444 34434456677888999987532 35664 56899999999999874     378999999999999999999


Q ss_pred             EEeCCCccEEEEE
Q 025000          238 YAALGKTRTRYLL  250 (259)
Q Consensus       238 ~~n~G~e~~~fi~  250 (259)
                      ++|.|+ +.++|+
T Consensus       112 ~~n~~~-~~~~l~  123 (348)
T d1juha_         112 FQIQDP-DTEMTG  123 (348)
T ss_dssp             EEECST-TEEEEE
T ss_pred             eEeCCC-CcEEEE
Confidence            999986 466665

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.89  E-value=3.3e-09  Score=96.21  Aligned_cols=76  Identities=14%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEc--CC--cEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNA--SG--VSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF  133 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~--~g--e~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v  133 (259)
                      +.+.+.+++|+||+..+.|-| ..+|++||++|++++++.  ++  +++.+++||+++||+|..|.+.|  ++++++|++
T Consensus       248 ~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~v  327 (372)
T d1j58a_         248 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI  327 (372)
T ss_dssp             CSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEE
T ss_pred             CceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEE
Confidence            579999999999998888844 679999999999999871  22  46899999999999999999999  668998887


Q ss_pred             EEe
Q 025000          134 ERR  136 (259)
Q Consensus       134 ~~~  136 (259)
                      .+.
T Consensus       328 f~s  330 (372)
T d1j58a_         328 FKD  330 (372)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            543

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.87  E-value=1.1e-08  Score=84.46  Aligned_cols=75  Identities=9%  Similarity=0.101  Sum_probs=60.2

Q ss_pred             CCCcEEEEEEEecCCCcCC------CC--CC-CceEEEEEEECEEEEEEcCC-----cEEEEeCCcEEEeCCCCcEEEEe
Q 025000           59 MGSHFVMYLANMQENARSA------LP--PH-DVERFIFVVQGSAMLTNASG-----VSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        59 ~g~~f~~~~~~l~Pg~~~~------~h--~~-~~Eef~yVl~G~l~v~v~~g-----e~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      .+..+.+-+.++.||....      .|  .| +.+|++|||+|++.+.+ ++     +++.+++||++++|+|..|++.|
T Consensus        63 ~~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l-~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N  141 (190)
T d1x82a_          63 KEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLL-QTPEGDAKWISMEPGTVVYVPPYWAHRTVN  141 (190)
T ss_dssp             CTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEE-ECTTCCEEEEEECTTCEEEECTTCEEEEEE
T ss_pred             CCCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEE-eeccCceEEEEecCCcEEEEecceeEEeEE
Confidence            3457888999999996432      23  22 57899999999999998 33     45789999999999999999999


Q ss_pred             --CCeEEEEEEE
Q 025000          125 --EGSATLVVFE  134 (259)
Q Consensus       125 --~~~a~~l~v~  134 (259)
                        ++++.++++.
T Consensus       142 ~Gde~L~~l~v~  153 (190)
T d1x82a_         142 IGDEPFIFLAIY  153 (190)
T ss_dssp             CSSSCEEEEEEE
T ss_pred             CCCCCEEEEEEE
Confidence              5677877763

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.87  E-value=3.7e-09  Score=88.17  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=61.7

Q ss_pred             CCcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEcCC------c--EEEEeCCcEEEeCCCCcEEEEe--CCeE
Q 025000           60 GSHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASG------V--SSKLMVDSYTYLPPNFAHSLRA--EGSA  128 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~~g------e--~~~L~~Gd~i~~p~~~~H~~~N--~~~a  128 (259)
                      +-++++.+++|+||+..++|.| ..+|++||++|++++.+ .+      +  +.+|++||.++||.|..|...|  ++++
T Consensus        69 ~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~-v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a  147 (201)
T d2et1a1          69 TLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGI-LGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEA  147 (201)
T ss_dssp             TSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-ECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCE
T ss_pred             ccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEE-EeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCE
Confidence            3579999999999999988854 67999999999999987 22      2  4689999999999999999999  5566


Q ss_pred             EEEEE
Q 025000          129 TLVVF  133 (259)
Q Consensus       129 ~~l~v  133 (259)
                      .++.+
T Consensus       148 ~~i~~  152 (201)
T d2et1a1         148 YMVVS  152 (201)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.82  E-value=1e-08  Score=85.30  Aligned_cols=78  Identities=13%  Similarity=0.020  Sum_probs=64.0

Q ss_pred             cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe---CCEEE-------EccCCcEEEeCCCCceeEEeCCC-cc
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWY-------PVQAGDVLWMAPFVPQWYAALGK-TR  245 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~g~~~-------~v~~GD~i~~~~~~~H~~~n~G~-e~  245 (259)
                      .++.+..++++||+-+-.| +....+.+||++|+|++.+   ++...       .+++||++++|+|.+||+.|.|+ ++
T Consensus        40 ~~~~v~~~~i~P~~l~lP~-~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~  118 (200)
T d2phla1          40 EDYRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKED  118 (200)
T ss_dssp             TTCEEEEEEECSSEEEEEE-EESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCC
T ss_pred             cceEEEEEEecCCceeeee-cCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCC
Confidence            3688889999999998754 4456688999999998843   55432       59999999999999999999875 79


Q ss_pred             EEEEEEeecC
Q 025000          246 TRYLLYKDVN  255 (259)
Q Consensus       246 ~~fi~~k~~n  255 (259)
                      |+++++.|..
T Consensus       119 l~~~~l~~~~  128 (200)
T d2phla1         119 LRIIQLAMPV  128 (200)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEecCC
Confidence            9999987653

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.71  E-value=1.7e-08  Score=81.82  Aligned_cols=63  Identities=19%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-c--CCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-A--SGVSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~--~ge~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      .+.+.++++.||+-..+|++..+|++||++|++.+.+ .  +.+++.|++||.+++|+|.+|.+.|
T Consensus        43 ~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n  108 (170)
T d1uija1          43 DYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVN  108 (170)
T ss_dssp             TCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEE
T ss_pred             heEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEE
Confidence            5888899999998777766789999999999999887 2  2356899999999999999999999

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.68  E-value=4.4e-08  Score=79.62  Aligned_cols=88  Identities=9%  Similarity=0.096  Sum_probs=69.0

Q ss_pred             EEEEeeCCCC----CcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEe---CC-E--EEEccCCcEEEeCCCC
Q 025000          166 QLRKLLPQAV----PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL---GD-S--WYPVQAGDVLWMAPFV  234 (259)
Q Consensus       166 ~~~~l~p~~~----~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~---~g-~--~~~v~~GD~i~~~~~~  234 (259)
                      .++.+.+.+.    .-++.+.+.+|+||+.... |-|. ..|..||++|+|++.+   +| +  ...+++||++++|.|.
T Consensus        25 ~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~P-H~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~  103 (174)
T d1fxza2          25 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVP-HYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNF  103 (174)
T ss_dssp             EEEEECTTTSGGGTTTTCCEEEEEECTTCEEEE-EEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTC
T ss_pred             EEEEecHHHhhhhhhcCceEEEeeecCCCEeCC-ccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCC
Confidence            3455555442    2478899999999999886 6664 5588999999999986   44 4  4459999999999999


Q ss_pred             ceeEEeCCCccEEEEEEeecC
Q 025000          235 PQWYAALGKTRTRYLLYKDVN  255 (259)
Q Consensus       235 ~H~~~n~G~e~~~fi~~k~~n  255 (259)
                      .|+..|.+ +.+.+++++.-.
T Consensus       104 ~h~~~n~~-~~~~~v~~~~~~  123 (174)
T d1fxza2         104 VVAARSQS-DNFEYVSFKTND  123 (174)
T ss_dssp             EEEEEECS-TTEEEEEEESSS
T ss_pred             EEEEEeCC-CCeEEEEEEccC
Confidence            99999965 678999887543

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.65  E-value=3e-08  Score=80.93  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=60.2

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeC---CeEEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAE---GSATLVVFER  135 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~---~~a~~l~v~~  135 (259)
                      .+.+.+++|.||+-..+|+.+.+|++||++|++.+++ ..+  +++.|++||.+++|+|.+|.+.|.   +...++.+..
T Consensus        40 ~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~  119 (178)
T d1dgwa_          40 DYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAI  119 (178)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEE
T ss_pred             ceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEec
Confidence            6888899999999887766678999999999998887 223  568999999999999999999982   3455555543

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.62  E-value=5.1e-08  Score=81.21  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=59.0

Q ss_pred             cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCC---eEEEEEEE
Q 025000           62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEG---SATLVVFE  134 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~---~a~~l~v~  134 (259)
                      .+.+.++++.||+-..+|+++.++++||++|++.+.+ ..|  +++.|++||.++||+|.+|.+.|.+   ...++.+.
T Consensus        39 ~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~  117 (203)
T d1uika1          39 DYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLA  117 (203)
T ss_dssp             TCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             ceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEe
Confidence            6777889999998876666789999999999998877 222  5689999999999999999999922   44455543

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.61  E-value=1e-08  Score=83.72  Aligned_cols=57  Identities=16%  Similarity=0.406  Sum_probs=49.5

Q ss_pred             ceeeccceEEEEEEceEEE--EeCCEE--EEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          195 KEVHYNQHGLLLLEGQGIY--RLGDSW--YPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       195 ~~~H~~eh~~~il~G~g~~--~~~g~~--~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .|+|..+|+.||++|+|.+  .++|+|  ..+++||+|.+|+|++|||.++.+..+++|.+
T Consensus        95 EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRl  155 (179)
T d1zrra1          95 EHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRI  155 (179)
T ss_dssp             CBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEE
T ss_pred             cccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEE
Confidence            4788899999999999985  456666  46899999999999999999998899998844

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.59  E-value=1e-07  Score=81.18  Aligned_cols=89  Identities=15%  Similarity=0.241  Sum_probs=71.6

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC---------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  216 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---------------------------  216 (259)
                      ++..++.+.-   .+.++.+.+++|++-+=. ++......+||++|+|++.+=                           
T Consensus        24 ~E~~d~~~~qlqcagV~~~r~~I~p~gL~lP-~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~  102 (239)
T d1fxza1          24 IETWNPNNKPFQCAGVALSRCTLNRNALRRP-SYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRH  102 (239)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EEESSCEEEEEEECCEEEEEECTTCCCC------------------CC
T ss_pred             EEecCCCChhhhhccchhheeeeccCceecc-eecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhh
Confidence            3445554321   356777889999998754 556777999999999988763                           


Q ss_pred             CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          217 DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       217 g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                      -+.+.+++||++.+|+|.+||+.|.|+++|..++.-|+|=
T Consensus       103 qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n  142 (239)
T d1fxza1         103 QKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNS  142 (239)
T ss_dssp             CCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTC
T ss_pred             hhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEecccc
Confidence            3567999999999999999999999999999999877763

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.56  E-value=1e-07  Score=77.44  Aligned_cols=86  Identities=13%  Similarity=0.215  Sum_probs=67.8

Q ss_pred             EEEeeCCCCC----cceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEe---CC-E--EEEccCCcEEEeCCCCc
Q 025000          167 LRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL---GD-S--WYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       167 ~~~l~p~~~~----~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~---~g-~--~~~v~~GD~i~~~~~~~  235 (259)
                      +..+.+.+.-    -++.+.+..|+||+.... |-|. ..+.+||++|+|++.+   ++ +  ...+++||++++|.|..
T Consensus        31 i~~~~~~~fP~L~~lgls~~~v~L~pga~~~P-H~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~  109 (173)
T d1od5a2          31 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSP-HWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFV  109 (173)
T ss_dssp             EEEESTTTCTTHHHHTCEEEEEEECTTCEEEE-EEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCE
T ss_pred             EEEecHHHhhhhhhccceEEEEEEcCCcEecC-ccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCE
Confidence            3335555432    268999999999999986 6675 4588999999999874   33 3  34699999999999999


Q ss_pred             eeEEeCCCccEEEEEEeec
Q 025000          236 QWYAALGKTRTRYLLYKDV  254 (259)
Q Consensus       236 H~~~n~G~e~~~fi~~k~~  254 (259)
                      |+..| +++.++|+.+++-
T Consensus       110 h~~~n-~~~~~~~v~~~~~  127 (173)
T d1od5a2         110 VAEQG-GEQGLEYVVFKTH  127 (173)
T ss_dssp             EEEEE-EEEEEEEEEEESS
T ss_pred             EEEEc-CCCceEEEEeecC
Confidence            99887 5688999999873

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.56  E-value=1.5e-07  Score=80.30  Aligned_cols=89  Identities=15%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             EEEeeCCCCC---cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC---------------------------
Q 025000          167 LRKLLPQAVP---FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---------------------------  216 (259)
Q Consensus       167 ~~~l~p~~~~---~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---------------------------  216 (259)
                      +...++.+.-   .+.++.+.+++|++.+-. ++.......||++|+|++.+=                           
T Consensus        24 ~E~wd~~~~qlqcagV~~~r~~I~p~gL~lP-~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~  102 (245)
T d1od5a1          24 IETWNSQHPELQCAGVTVSKRTLNRNGLHLP-SYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQ  102 (245)
T ss_dssp             EEECCTTSHHHHHHTCEEEEEEECTTEEEEE-EECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------
T ss_pred             EEeCCCCCHHHhhcCceeEEEEEcCCccccc-cccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccc
Confidence            3445554321   367888899999999854 456777999999999998775                           


Q ss_pred             ---CEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000          217 ---DSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR  256 (259)
Q Consensus       217 ---g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr  256 (259)
                         -+.+.++.||++.+|+|.+||++|.|+++|+-+..-|+|-
T Consensus       103 d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N  145 (245)
T d1od5a1         103 DSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSN  145 (245)
T ss_dssp             EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTC
T ss_pred             cceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccC
Confidence               2345699999999999999999999999999999999874

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.54  E-value=8.6e-08  Score=75.47  Aligned_cols=98  Identities=13%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             eccCCCCCCcccCC----ceEEEEEeeC-CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--EEEE
Q 025000          149 VGSTDKQPLLETPG----EVFQLRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYP  221 (259)
Q Consensus       149 v~~~~di~~~~~~g----~~~~~~~l~p-~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~  221 (259)
                      +.+.+|+|+++...    +++..+.|.- .+.  .....++.++||+.+|. |.|...+.+|||+|+-.+..+.  .-..
T Consensus        10 ~v~~~d~~W~p~~~~~~~~G~~~k~L~~d~~t--g~~~~l~r~~~G~~~p~-H~H~~~e~~~VL~G~l~~~~g~~~~g~~   86 (144)
T d2o1qa1          10 YVQMDQVDWKPFPAAFSTGGIRWKLLHVSPEM--GSWTAIFDCPAGSSFAA-HVHVGPGEYFLTKGKMDVRGGKAAGGDT   86 (144)
T ss_dssp             CCCGGGSCCEECCGGGEESCCEEEEEEEETTT--TEEEEEEEECTTEEECC-EEESSCEEEEEEEEEEEETTCGGGTSEE
T ss_pred             eEcccCCcceECCcccCCCCeEEEEeeeCCCC--CcEEEEEEeCCCcCcCC-CccccCEEEEEEEEEEEecCCCcCCCce
Confidence            44789999999742    3556666542 222  33456889999999997 7787778899999998886432  1246


Q ss_pred             ccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          222 VQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       222 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      +.+|+++|.++|..|... +++|+.+++.
T Consensus        87 ~~~g~y~~~Pag~~H~~~-~~~e~~~~~~  114 (144)
T d2o1qa1          87 AIAPGYGYESANARHDKT-EFPVASEFYM  114 (144)
T ss_dssp             EESSEEEEECTTCEESCC-EEEEEEEEEE
T ss_pred             EeCCceeEcCCCCeEccc-cCCCCEEEEE
Confidence            779999999999999743 3556666654

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.51  E-value=3.3e-07  Score=74.29  Aligned_cols=74  Identities=18%  Similarity=0.298  Sum_probs=60.9

Q ss_pred             CcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEc--CC-cE--EEEeCCcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           61 SHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA--SG-VS--SKLMVDSYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~--~g-e~--~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      -++.+.++.|+||+-..+| +....|++||++|++.+++.  +| +.  ..|++||.++||+|..|...| ++...++.+
T Consensus        40 ~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~  119 (174)
T d1fxza2          40 LRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSF  119 (174)
T ss_dssp             TTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             cCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEE
Confidence            4788999999999888888 45789999999999999972  23 33  359999999999999999999 445666666


Q ss_pred             E
Q 025000          134 E  134 (259)
Q Consensus       134 ~  134 (259)
                      .
T Consensus       120 ~  120 (174)
T d1fxza2         120 K  120 (174)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.48  E-value=9.3e-06  Score=69.07  Aligned_cols=163  Identities=10%  Similarity=0.154  Sum_probs=107.2

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEE-EEe---CCeEEEEEEEEeccccCCCCcceeeccCCCC
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHS-LRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  155 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~-~~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di  155 (259)
                      ....|--++.|.|.++|++ ||+++.|+..|++|++.|.... +..   ..+++|.+...+   ....=|..++. .+|+
T Consensus        71 lerRElgiVnigG~g~V~V-DG~~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~SAP---Ah~~yPtr~I~-~~~~  145 (260)
T d1ywka1          71 LERRELGVINIGGPGFIEI-DGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVP---AHHKYPNVKIS-IDEI  145 (260)
T ss_dssp             TTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEE---CSSCCCCEEEC-TTTC
T ss_pred             hhhcEEEEEEeCCcEEEEE-CCEEEecCCCcEEEECCCCceEEEeccCCCCCcEEEEEeec---cCCCCCcEEEC-HHHC
Confidence            4567778889999999999 9999999999999999987655 443   458999887654   44433444444 6677


Q ss_pred             CCcccCC-c---eEEEEE-eeCCCCCc-ceEEEEEEecCCc---ccCcceeec--cceEEEE--EEceEEEEeCC-----
Q 025000          156 PLLETPG-E---VFQLRK-LLPQAVPF-DFNIHIMDFQPGD---FLNVKEVHY--NQHGLLL--LEGQGIYRLGD-----  217 (259)
Q Consensus       156 ~~~~~~g-~---~~~~~~-l~p~~~~~-~~~~~~~t~~PG~---~~~~~~~H~--~eh~~~i--l~G~g~~~~~g-----  217 (259)
                      +...... .   ..++.+ +.|+.... .+.|-...|.||+   +.|. |+|.  +|+.||.  =+++-++.+-|     
T Consensus       146 ~~~~~G~~~~sN~R~I~~~i~p~~~~scqLlmG~tvl~pGg~WsS~Pp-H~HDRrmE~YyYFdl~e~~~V~H~mGep~eT  224 (260)
T d1ywka1         146 TPMETGDPLTLNQRKIYQYIHPNVCESCQLQMGYTILEPGSAWNTMPC-HTHERRMEAYVYFDMEEDTRIFHMMGKPDET  224 (260)
T ss_dssp             CCCCBCCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCCCC---------CEEEEEEESCCTTCCEEEEESSTTSC
T ss_pred             CeEeccCccccCcceeeeeecCCccchhceEEEEEEEcCCCccCCcCC-cccCCCCceEEEEEcCCCceEEEeeCCCCce
Confidence            6666632 1   234544 55765544 5667778889997   3554 5564  4555554  12333444444     


Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      +..-|+-+|.|..|+---|+  ..|....+||-
T Consensus       225 rhivv~n~qaVisP~wsiHs--g~gt~~Y~FiW  255 (260)
T d1ywka1         225 KHLVMSNEQAAISPSWSIHS--GVGTSNYSFIW  255 (260)
T ss_dssp             EEEEECTTEEEEECTTSCCC--EEESSCCEEEE
T ss_pred             EEEEEECCcEEEcCCccccC--CCCccCcEEEE
Confidence            44778999999999988897  45666666763

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.48  E-value=2.8e-07  Score=75.43  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             EEEeeCCCCC----cceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEeCC-------------------EEEEc
Q 025000          167 LRKLLPQAVP----FDFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD-------------------SWYPV  222 (259)
Q Consensus       167 ~~~l~p~~~~----~~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g-------------------~~~~v  222 (259)
                      +..+.+.+..    -++.+.+.+++||+-... |-|... +..||++|+|++.+=+                   ....|
T Consensus        26 ~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~P-h~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l  104 (185)
T d1uika2          26 LFEITPEKNPQLRDLDVFLSVVDMNEGALFLP-HFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAEL  104 (185)
T ss_dssp             EEEECTTTCHHHHHHTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEE
T ss_pred             EEEeChhhChhhhhcCchhheeecCCCceeee-eecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEe
Confidence            3445555432    368999999999999986 667544 8889999999776521                   35689


Q ss_pred             cCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000          223 QAGDVLWMAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       223 ~~GD~i~~~~~~~H~~~n~G~e~~~fi  249 (259)
                      ++||++++|+|.+|+..|.++..+.++
T Consensus       105 ~~GDv~viP~G~~~~~~n~~d~~~v~~  131 (185)
T d1uika2         105 SEQDIFVIPAGYPVVVNATSDLNFFAF  131 (185)
T ss_dssp             CTTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             cCCcEEEECCCCEEEEEcCCCccEEEE
Confidence            999999999999999999988555444

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.46  E-value=2.2e-07  Score=75.32  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             cEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEc--CC-cE--EEEeCCcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           62 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA--SG-VS--SKLMVDSYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~--~g-e~--~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      ++.+.++.|.||+-..+| +...+|++||++|++++++.  ++ +.  .+|++||.++||+|..|...| ++.+.++.+
T Consensus        46 gls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~  124 (173)
T d1od5a2          46 GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVF  124 (173)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEE
T ss_pred             cceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEe
Confidence            688999999999988888 45789999999999999872  23 33  469999999999999998888 444455444

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=4.4e-06  Score=71.71  Aligned_cols=163  Identities=9%  Similarity=0.138  Sum_probs=109.4

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEE-Ee---CCeEEEEEEEEeccccCCCCcceeeccCCCC
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL-RA---EGSATLVVFERRYASLENHITEQIVGSTDKQ  155 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~-~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di  155 (259)
                      ....|--++.|.|.++|++ ||+++.|+..|++|++.|..+.. ..   ..+++|.+...+   ....-|...+. .+++
T Consensus        73 LerRElgiVnlgG~g~V~V-DG~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAP---Ah~~yPtr~i~-~~da  147 (277)
T d1xrua1          73 LERRELGVINIGGAGTITV-DGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAP---AHTTYPTKKVT-PDEV  147 (277)
T ss_dssp             TTTEEEEEEECSSCEEEEE-TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEE---CSSCCCCEEEC-HHHH
T ss_pred             hhccEEEEEEeCCCEEEEE-CCEEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEecc---cCCCCCcEEEC-HHHC
Confidence            4667888899999999999 99999999999999999977654 43   447899988655   44433444443 3445


Q ss_pred             CCcccC---C-ceEEEEE-eeCCCCCc-ceEEEEEEecCCcc---cCcceeec--cceEEEEE--EceEEEEeCC---E-
Q 025000          156 PLLETP---G-EVFQLRK-LLPQAVPF-DFNIHIMDFQPGDF---LNVKEVHY--NQHGLLLL--EGQGIYRLGD---S-  218 (259)
Q Consensus       156 ~~~~~~---g-~~~~~~~-l~p~~~~~-~~~~~~~t~~PG~~---~~~~~~H~--~eh~~~il--~G~g~~~~~g---~-  218 (259)
                      ......   + ...++.. +.|+.... ...|-...+.||+.   .| .|+|.  +|+.||.-  ++.-++.+-|   + 
T Consensus       148 ~~~~~G~~~~sN~R~I~~~i~p~~~~s~qLlmG~tvl~PGg~WSSyP-pHkHDRrmEeyyYF~l~~~~~Vfh~mGep~et  226 (277)
T d1xrua1         148 SPVTLGDNLTSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMP-CHTHERRMEVYFYFNMDDDACVFHMMGQPQET  226 (277)
T ss_dssp             CCEEECCGGGTCCEEEEEEESTTTCCCSSCEEEEEEECTTCCEESCS-EEECTTEEEEEEEESCCTTCCEEEEEEETTEE
T ss_pred             CeEeeccCCCcceEEEEEEecCCCcccceEEEEEEEEcCCCccCCCC-CccCCCCcceEEEEEcCCCceEEEecCCCCce
Confidence            445542   2 2234545 45775544 46666777889982   44 46665  46666652  2233333332   3 


Q ss_pred             -EEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          219 -WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       219 -~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                       -+-|+-+|++.-|+.-.|+  ..|.....||-
T Consensus       227 rhivv~neqaVisP~wsih~--g~gt~~y~fiW  257 (277)
T d1xrua1         227 RHIVMHNEQAVISPSWSIHS--GVGTKAYTFIW  257 (277)
T ss_dssp             EEEEECSSEEEEECTTCEEE--EEESSCCEEEE
T ss_pred             eEEEEECCcEEECCCCcccC--CCCCcceEEEE
Confidence             3778999999999999998  45566667763

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=3.7e-07  Score=71.97  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEe-CCCccEEEEE
Q 025000          199 YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA-LGKTRTRYLL  250 (259)
Q Consensus       199 ~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n-~G~e~~~fi~  250 (259)
                      ..-..+||++|+|.+.+||+++.+++||+++++||.+|.+.. .++++++|+.
T Consensus        37 ~~Y~l~yv~~G~G~~~i~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~w   89 (161)
T d2arca_          37 KGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQW   89 (161)
T ss_dssp             SSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEE
Confidence            333789999999999999999999999999999999999754 4567776653

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.40  E-value=6.8e-07  Score=71.61  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             cceEEEEEEecCCcccCcceeecc-ceEEEEEEceEEEEe---CCE---------EEEccCCcEEEeCCCCceeEEeCCC
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVHYN-QHGLLLLEGQGIYRL---GDS---------WYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H~~-eh~~~il~G~g~~~~---~g~---------~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      -++.+..++++||+-... |-|.. .+.+||++|+|++.+   +|+         ...+++||++++|.|..|+..|.|+
T Consensus        18 l~~~v~~~~l~p~~~~~P-H~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~   96 (162)
T d2phla2          18 LNVLISSIEMEEGALFVP-HYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSN   96 (162)
T ss_dssp             TTEEEEEEEECTTEEEEE-EEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSS
T ss_pred             CCeEEEEEEECCCcEeCC-ccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCC
Confidence            488999999999999875 55654 488999999997765   332         4579999999999999999999986


Q ss_pred             ccEE
Q 025000          244 TRTR  247 (259)
Q Consensus       244 e~~~  247 (259)
                      +++.
T Consensus        97 ~~~v  100 (162)
T d2phla2          97 VNFT  100 (162)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            5543

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.38  E-value=7.2e-07  Score=71.45  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             cEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEc--CCc---------EEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000           62 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA--SGV---------SSKLMVDSYTYLPPNFAHSLRAEGSAT  129 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~--~ge---------~~~L~~Gd~i~~p~~~~H~~~N~~~a~  129 (259)
                      ++.+..++|.||+-..+| +....+++||++|++.+++.  +|+         +..|++||.++||+|.+|...|+++..
T Consensus        19 ~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~   98 (162)
T d2phla2          19 NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVN   98 (162)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEE
T ss_pred             CeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCce
Confidence            788899999999888777 56789999999999998882  232         347999999999999999999966666


Q ss_pred             EEEE
Q 025000          130 LVVF  133 (259)
Q Consensus       130 ~l~v  133 (259)
                      ++.+
T Consensus        99 ~v~~  102 (162)
T d2phla2          99 FTGF  102 (162)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6555

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=5.2e-07  Score=73.24  Aligned_cols=74  Identities=16%  Similarity=0.357  Sum_probs=57.8

Q ss_pred             EEEEEEecCCcccC---------cceeeccceEEEEEEceEEEEeC---CEE--EEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          180 NIHIMDFQPGDFLN---------VKEVHYNQHGLLLLEGQGIYRLG---DSW--YPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       180 ~~~~~t~~PG~~~~---------~~~~H~~eh~~~il~G~g~~~~~---g~~--~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      .+-++++.|+..-.         .-|+|..+|+.|||+|+|.+.+.   ++|  +.+++||+|++|+|..|||..+-+..
T Consensus        63 ~~D~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~  142 (179)
T d1vr3a1          63 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNY  142 (179)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCC
T ss_pred             ceEEEEECCccCCCHHHHHHHHhhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCC
Confidence            34567777764211         15888999999999999999885   456  46789999999999999999887777


Q ss_pred             EEEEE-Eee
Q 025000          246 TRYLL-YKD  253 (259)
Q Consensus       246 ~~fi~-~k~  253 (259)
                      ++.|- |+|
T Consensus       143 v~aiRlF~~  151 (179)
T d1vr3a1         143 VKAMRLFVG  151 (179)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEECC
Confidence            87775 554

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.8e-05  Score=68.26  Aligned_cols=186  Identities=10%  Similarity=0.043  Sum_probs=127.9

Q ss_pred             EEEE-EEEecCCCcCCCC-CCCceEEEEEEECE-EEEEEcCCcEEEEeCCcEEEeCC--CCcEEEEe--CCeEEEE--EE
Q 025000           63 FVMY-LANMQENARSALP-PHDVERFIFVVQGS-AMLTNASGVSSKLMVDSYTYLPP--NFAHSLRA--EGSATLV--VF  133 (259)
Q Consensus        63 f~~~-~~~l~Pg~~~~~h-~~~~Eef~yVl~G~-l~v~v~~ge~~~L~~Gd~i~~p~--~~~H~~~N--~~~a~~l--~v  133 (259)
                      |.++ ...+.|+.+-+.| |.+-|.+=||++|. ++=.---|...++++||.=+.-|  |+.|+=.|  +++++++  |+
T Consensus        37 f~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiWi  116 (288)
T d1j1la_          37 FLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWV  116 (288)
T ss_dssp             EEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEE
T ss_pred             eEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEecCCCCeeEecCCCEEEEecccceEecccccccccceeeEEEe
Confidence            4443 5566777666667 55788888999985 54442127778999999999888  56777667  4466554  55


Q ss_pred             EEeccccCCCCcceeeccCCCCCCcccCCceEEEEEee--------CCCCCcceEEEEEEecCCcccCcceeeccceEEE
Q 025000          134 ERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLL--------PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLL  205 (259)
Q Consensus       134 ~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~--------p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~  205 (259)
                      .-+ +......|....-.-+|+|....++  +..+.+.        |-....+..+--+.++||+.+-..-.....-.+|
T Consensus       117 nlp-~~~k~~~P~y~~~~~~diP~~~~~~--~~~~vi~G~~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~ly  193 (288)
T d1j1la_         117 NLR-SSEKMVEPQYQELKSEEIPKPSKDG--VTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIY  193 (288)
T ss_dssp             ECC-GGGTTSCCEEEEECGGGSCCCEETT--EEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEE
T ss_pred             cCC-hhhccccccccccccccCccccccc--ceEEEEeccccccccccccCCchhhhhhhcccCceEEEecCCCCeEEEE
Confidence            432 1122234555555566777766544  2344442        1122346777788999999853211223345589


Q ss_pred             EEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          206 LLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       206 il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      +++|.+.+...+....++.++.++..++..=.++++++++++||++
T Consensus       194 vi~G~~~v~g~~~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LLl  239 (288)
T d1j1la_         194 TISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  239 (288)
T ss_dssp             EEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             EEEeeEEecCcccceeecCceEEEEcCCCeEEEEeCCCCCCEEEEE
Confidence            9999999998888889999999999999988899999999999987

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.25  E-value=1.5e-06  Score=70.93  Aligned_cols=73  Identities=12%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             CcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEc--CC----------------cEEEEeCCcEEEeCCCCcEE
Q 025000           61 SHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNA--SG----------------VSSKLMVDSYTYLPPNFAHS  121 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~--~g----------------e~~~L~~Gd~i~~p~~~~H~  121 (259)
                      .++.+.+++|.||+-..+| +....+++||++|++.+.+.  ++                .+..|++||.++||+|.+|.
T Consensus        40 ~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~  119 (185)
T d1uika2          40 LDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVV  119 (185)
T ss_dssp             HTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEE
T ss_pred             cCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEE
Confidence            4789999999999988778 45778999999999988772  11                24689999999999999999


Q ss_pred             EEeCCeEEEEEE
Q 025000          122 LRAEGSATLVVF  133 (259)
Q Consensus       122 ~~N~~~a~~l~v  133 (259)
                      +.|++...++.+
T Consensus       120 ~~n~~d~~~v~~  131 (185)
T d1uika2         120 VNATSDLNFFAF  131 (185)
T ss_dssp             EEESSSEEEEEE
T ss_pred             EEcCCCccEEEE
Confidence            999776666655

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=2.3e-06  Score=61.72  Aligned_cols=52  Identities=10%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000           82 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus        82 ~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v  133 (259)
                      +.+|++|||+|+++++..+|+.++++|||.++||.|..=+|+..++++=+++
T Consensus        35 ~~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v~e~v~K~yv   86 (88)
T d1o5ua_          35 DTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYN   86 (88)
T ss_dssp             SSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred             CccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEECceEEEEEE
Confidence            4689999999999999866788999999999999999999997665554443

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=0.00011  Score=61.32  Aligned_cols=174  Identities=12%  Similarity=0.082  Sum_probs=109.5

Q ss_pred             CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCC--CCcEEEEe---CCeEEEE--
Q 025000           60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP--NFAHSLRA---EGSATLV--  131 (259)
Q Consensus        60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~--~~~H~~~N---~~~a~~l--  131 (259)
                      |.-..+-.-++.||++-+.| +.+.|.+-||++|+++=.-.-|...++++||.=+.-|  |+.|+=.|   +++++++  
T Consensus        38 g~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQi  117 (231)
T d1tq5a1          38 SALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQI  117 (231)
T ss_dssp             TTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEE
T ss_pred             CceEEEecceecCCCCCCCCCcCCeeEEEEEEeEEEEECCCCCCcEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEE
Confidence            33444557889999988887 5678888899999998664225667999999999888  55677666   3356664  


Q ss_pred             EEEEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCC------CCCcceEEEEEEecCCcccCcceee-ccceEE
Q 025000          132 VFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQ------AVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGL  204 (259)
Q Consensus       132 ~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~------~~~~~~~~~~~t~~PG~~~~~~~~H-~~eh~~  204 (259)
                      |+ .+.+  .+..|.--....+++     ++ .  ...+.+.      ....+..+-...+.+|..+-. ... ...--+
T Consensus       118 Wi-~P~~--~~~~p~y~~~~~~~~-----~~-~--~~~~~~~g~~~~~~~~~~~~l~~~~l~~g~~~~~-~l~~~~~~~l  185 (231)
T d1tq5a1         118 WI-MPEE--NGITPRYEQRRFDAV-----QG-K--QLVLSPDARDGSLKVHQDMELYRWALLKDEQSVH-QIAAERRVWI  185 (231)
T ss_dssp             EE-CCSS--CSCCCEEEEECCCCC-----SS-E--EEEEESSCGGGCEECSSSCEEEEEEECTTCEEEE-CCCTTCEEEE
T ss_pred             Ee-CChh--HCCCcccccceeccc-----cc-e--EEecccccccCCcccccccEEEEEEecCCceEEE-cccCCccEEE
Confidence            55 2211  232343322222222     11 1  1111121      112355566888899987632 111 122347


Q ss_pred             EEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          205 LLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       205 ~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      |+++|+..  +||+  .+.+||.+.+.++..=.+++.  ++.++|++
T Consensus       186 yvi~G~l~--i~g~--~l~~gd~~~l~~~~~l~i~A~--~~a~~LL~  226 (231)
T d1tq5a1         186 QVVKGNVT--INGV--KASTSDGLAIWDEQAISIHAD--SDSEVLLF  226 (231)
T ss_dssp             EEEESEEE--ETTE--EEETTCEEEEESCSCEEEEES--SSEEEEEE
T ss_pred             EEEeeEEE--ECCE--EccCCCeEEECCCCeEEEEEC--CCCEEEEE
Confidence            89998866  5886  588999999988887778774  56788776

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.20  E-value=8.4e-07  Score=69.58  Aligned_cols=84  Identities=11%  Similarity=0.015  Sum_probs=60.6

Q ss_pred             cceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEE-Ee
Q 025000           48 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSL-RA  124 (259)
Q Consensus        48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~-~N  124 (259)
                      +...++|.... ..+....++.++||+..+.|.|.+.|.+|||+|++.... +.  ....+.+|+++|.|+|..|.. ..
T Consensus        29 G~~~k~L~~d~-~tg~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~~-g~~~~g~~~~~g~y~~~Pag~~H~~~~~  106 (144)
T d2o1qa1          29 GIRWKLLHVSP-EMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRG-GKAAGGDTAIAPGYGYESANARHDKTEF  106 (144)
T ss_dssp             CCEEEEEEEET-TTTEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEETT-CGGGTSEEEESSEEEEECTTCEESCCEE
T ss_pred             CeEEEEeeeCC-CCCcEEEEEEeCCCcCcCCCccccCEEEEEEEEEEEecC-CCcCCCceEeCCceeEcCCCCeEccccC
Confidence            34445543322 224466889999999989898888888999999998753 22  125789999999999999973 44


Q ss_pred             CCeEEEEEE
Q 025000          125 EGSATLVVF  133 (259)
Q Consensus       125 ~~~a~~l~v  133 (259)
                      ++.+.+++.
T Consensus       107 ~e~~~~~~~  115 (144)
T d2o1qa1         107 PVASEFYMS  115 (144)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            555666554

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=4.7e-06  Score=65.32  Aligned_cols=55  Identities=11%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe---CCeEEEEEEEE
Q 025000           80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA---EGSATLVVFER  135 (259)
Q Consensus        80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N---~~~a~~l~v~~  135 (259)
                      .+..=.++||++|++.+.+ +++++.+++||.+.+|||..|.+..   ..+.+++|+..
T Consensus        35 g~~~Y~l~yv~~G~G~~~i-~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F   92 (161)
T d2arca_          35 GMKGYILNLTIRGQGVVKN-QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF   92 (161)
T ss_dssp             CCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeEEEEEE-CCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEE
Confidence            3567899999999999999 9999999999999999999999764   34789999854

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.09  E-value=3.2e-06  Score=69.80  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCc-EE------EEeCCcEEEeCCCCcEEEEe-C--CeE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGV-SS------KLMVDSYTYLPPNFAHSLRA-E--GSA  128 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge-~~------~L~~Gd~i~~p~~~~H~~~N-~--~~a  128 (259)
                      ..+....+++.|++-.-+|..+..+++||++|++.+++  .++. ++      .|++||.+++|+|.+|.+.| +  ++.
T Consensus        40 ~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l  119 (200)
T d2phla1          40 EDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDL  119 (200)
T ss_dssp             TTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCE
T ss_pred             cceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCE
Confidence            35777888999998876665578999999999998877  2332 22      48999999999999999998 3  245


Q ss_pred             EEEEEE
Q 025000          129 TLVVFE  134 (259)
Q Consensus       129 ~~l~v~  134 (259)
                      +++.+.
T Consensus       120 ~~~~l~  125 (200)
T d2phla1         120 RIIQLA  125 (200)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555443

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.97  E-value=6.6e-07  Score=72.68  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=48.1

Q ss_pred             CCCCCCceEEEEEEECEEEEEE-cCCcE--EEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCCCc
Q 025000           77 ALPPHDVERFIFVVQGSAMLTN-ASGVS--SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHIT  145 (259)
Q Consensus        77 ~~h~~~~Eef~yVl~G~l~v~v-~~ge~--~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~~p  145 (259)
                      ..|.|..+|+.||++|++.+.+ .+++.  ..+++||.+.+|+|++|+|.......+. ..+-|...+|+.|
T Consensus        94 ~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~-aiRlF~~~~gW~~  164 (179)
T d1zrra1          94 NEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFT-AIRIFDNPEGWIA  164 (179)
T ss_dssp             SCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCE-EEEEECCGGGEES
T ss_pred             ccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEE-EEEEecCCCCCee
Confidence            4577888999999999998766 24443  5789999999999999999874332322 2233444455433

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=97.93  E-value=0.00012  Score=66.80  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             cceEEEEEEecCCcccCcceee--ccceEEEEEEceEEEEeCCE---EEEccCCcEEEeCCCCceeEEeCCC
Q 025000          177 FDFNIHIMDFQPGDFLNVKEVH--YNQHGLLLLEGQGIYRLGDS---WYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       177 ~~~~~~~~t~~PG~~~~~~~~H--~~eh~~~il~G~g~~~~~g~---~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      .+|.+.++++.++..... ...  .-..+++|++|++.+..++.   .+++++||.+|++++.+=.+.+.|.
T Consensus       355 ~~F~v~~~~l~~~~~~~~-~~~~~~~~~Illv~~G~~~i~~~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~~  425 (440)
T d1pmia_         355 AEFSVLQTIFDKSKGGKQ-VIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADSA  425 (440)
T ss_dssp             SSCEEEEEECCTTTCCEE-EECCCSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECSS
T ss_pred             CceEEEEEEECCCCCcee-eecCCCCcEEEEEEcCEEEEEecCCCccEEEeCCceEEEEcCCceEEEEeecC
Confidence            457888999988764322 111  22378999999999998664   7999999999999998766777764

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=0.00016  Score=63.01  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCce-eEE
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYA  239 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H-~~~  239 (259)
                      .|.+.++++.....+.   .....++++|++|+|.+..+++.+++++||.+|+|+++.. .++
T Consensus       246 ~F~~~~~~~~~~~~~~---~~~~~~il~vi~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~  305 (315)
T d1qwra_         246 YFSVYKWDINGEAEMA---QDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMPDFTIK  305 (315)
T ss_dssp             SCEEEEEEEEEEEEEC---CCSSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCCEEEE
T ss_pred             cEEEEEEEecCcEEec---cCCCcEEEEEEeCeEEEEECCEEEEEecCcEEEEECCCCCEEEE
Confidence            4677788876433332   2233588999999999999999999999999999998764 343

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=97.71  E-value=2.1e-05  Score=66.44  Aligned_cols=73  Identities=11%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc-C-------------------------CcEEEEeCCcEEEe
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S-------------------------GVSSKLMVDSYTYL  114 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~-------------------------ge~~~L~~Gd~i~~  114 (259)
                      ++...++.+|.|++-.-+|......++||++|+..+.+. .                         -+.+.|++||.+.+
T Consensus        37 agV~~~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~i  116 (239)
T d1fxza1          37 AGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAV  116 (239)
T ss_dssp             HTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEE
T ss_pred             ccchhheeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEe
Confidence            577888999999987755557789999999999988772 1                         13459999999999


Q ss_pred             CCCCcEEEEeCCeEEEEEE
Q 025000          115 PPNFAHSLRAEGSATLVVF  133 (259)
Q Consensus       115 p~~~~H~~~N~~~a~~l~v  133 (259)
                      |||++|.+.|++...+++|
T Consensus       117 PAG~~~w~~N~gn~~Lv~v  135 (239)
T d1fxza1         117 PTGVAWWMYNNEDTPVVAV  135 (239)
T ss_dssp             CTTCEEEEEECSSSCEEEE
T ss_pred             cCCceEEEEeCCCCcEEEE
Confidence            9999999999665455444

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2.7e-05  Score=62.88  Aligned_cols=78  Identities=12%  Similarity=0.129  Sum_probs=55.0

Q ss_pred             EEEecCCCcC----------CCCCCCceEEEEEEECEEEEEEc--CCcE--EEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           67 LANMQENARS----------ALPPHDVERFIFVVQGSAMLTNA--SGVS--SKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        67 ~~~l~Pg~~~----------~~h~~~~Eef~yVl~G~l~v~v~--~ge~--~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      ++++.|+.-.          ..|.|..+|+.||++|++.+.+.  +++.  ..+++||.|.+|+|+.|+|.-+.. ..+.
T Consensus        66 ~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~-~~v~  144 (179)
T d1vr3a1          66 IITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK-NYVK  144 (179)
T ss_dssp             EEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTT-CCEE
T ss_pred             EEEECCccCCCHHHHHHHHhhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCC-CCEE
Confidence            5566666421          46778889999999999999882  2444  467899999999999999986332 2333


Q ss_pred             EEEeccccCCCCc
Q 025000          133 FERRYASLENHIT  145 (259)
Q Consensus       133 v~~~y~p~~g~~p  145 (259)
                      ..+-|.-.+|+.|
T Consensus       145 aiRlF~~~~~W~~  157 (179)
T d1vr3a1         145 AMRLFVGEPVWTP  157 (179)
T ss_dssp             EEEEESSSCCCCC
T ss_pred             EEEEECCCCeeeE
Confidence            3444555566654

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=97.64  E-value=4.9e-05  Score=64.39  Aligned_cols=71  Identities=15%  Similarity=0.169  Sum_probs=56.4

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc-C--CcE--------------------------EEEeCCcE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA-S--GVS--------------------------SKLMVDSY  111 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~--ge~--------------------------~~L~~Gd~  111 (259)
                      ++....+.+|.|++-.-+|......++||++|+..+.+. -  -++                          +.|+.||.
T Consensus        37 agV~~~r~~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDV  116 (245)
T d1od5a1          37 AGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV  116 (245)
T ss_dssp             HTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCEEEEETTEE
T ss_pred             cCceeEEEEEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCCE
Confidence            578888999999987755557789999999999998882 1  122                          35999999


Q ss_pred             EEeCCCCcEEEEeCCeEEEE
Q 025000          112 TYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus       112 i~~p~~~~H~~~N~~~a~~l  131 (259)
                      +.+|||++|.+.|++...++
T Consensus       117 i~iPAG~~~w~yNdgn~~Lv  136 (245)
T d1od5a1         117 LVIPPGVPYWTYNTGDEPVV  136 (245)
T ss_dssp             EEECTTCCEEEEECSSSCEE
T ss_pred             EEECCCceEEEEeCCCCcEE
Confidence            99999999999995543333

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.48  E-value=0.00042  Score=56.28  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE----cC------CcEEEEeCCcEEEeCC--CCc
Q 025000           52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----AS------GVSSKLMVDSYTYLPP--NFA  119 (259)
Q Consensus        52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v----~~------ge~~~L~~Gd~i~~p~--~~~  119 (259)
                      +.++.-.....|+++.+...||..++.|.|+...++.|++|+++.++    ++      .++..|.+|+..++.+  +.-
T Consensus        57 r~lLy~d~~~~f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~I  136 (192)
T d2gm6a1          57 QMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDI  136 (192)
T ss_dssp             EEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCC
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCce
Confidence            45554444557999999999999999997777788999999997754    11      2456899999988855  567


Q ss_pred             EEEEeC
Q 025000          120 HSLRAE  125 (259)
Q Consensus       120 H~~~N~  125 (259)
                      |+++|.
T Consensus       137 H~v~N~  142 (192)
T d2gm6a1         137 HRVHNA  142 (192)
T ss_dssp             EEEEES
T ss_pred             eEEecC
Confidence            999993

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00032  Score=55.83  Aligned_cols=66  Identities=18%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEE-cC----Cc--EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTN-AS----GV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR  136 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~----ge--~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~  136 (259)
                      -|+.+..-|-..+|||+|=++|.+.|.+ .+    |+  ...+++||.+..||+++|+-.-.....=|++++.
T Consensus        41 GPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiGLVIEr~  113 (175)
T d1zvfa1          41 GPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVVEQD  113 (175)
T ss_dssp             SSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEEC
T ss_pred             CCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceEEEEEEe
Confidence            4555556677889999999999998876 22    22  6789999999999999999775333445555543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00022  Score=50.91  Aligned_cols=54  Identities=15%  Similarity=0.184  Sum_probs=40.8

Q ss_pred             EecCCcccCcceeeccceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCceeEEeC
Q 025000          185 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       185 t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      .-.||.. +  -+....|..|||+|+..+.. ||+.+.++|||.+++|.|-.=-..-.
T Consensus        24 ~~~pg~f-~--~~y~~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v~   78 (88)
T d1o5ua_          24 EKEVSEF-D--WYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVL   78 (88)
T ss_dssp             EECSEEE-E--EECSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEE
T ss_pred             eecCcEE-E--EEcCccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEEC
Confidence            3356543 2  23345589999999999988 78999999999999999987444433

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.36  E-value=0.00046  Score=54.88  Aligned_cols=65  Identities=28%  Similarity=0.466  Sum_probs=49.2

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEE-cCCc--EEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTN-ASGV--SSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR  136 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge--~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~  136 (259)
                      |+.+..-|...+|||+|=++|.+.|.+ .+|+  ...+++||.+.+|++++|+-.- .....=|++++.
T Consensus        44 PN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~~~~tiGLViEr~  112 (174)
T d1yfua1          44 PNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQ  112 (174)
T ss_dssp             CBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEEEEEC
T ss_pred             CcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccCCCCceeEEEEEe
Confidence            444445566889999999999998887 4554  5799999999999999999865 333444556544

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.35  E-value=0.0007  Score=58.52  Aligned_cols=55  Identities=16%  Similarity=0.144  Sum_probs=41.3

Q ss_pred             ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCce
Q 025000          178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ  236 (259)
Q Consensus       178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H  236 (259)
                      .|.++++++.....+.   ....-+++++++|++.+. +++.+++++|+.+++|+....
T Consensus       228 ~F~~~~~~~~~~~~~~---~~~~~~il~~~~G~~~i~-~~~~~~l~~G~s~~iPA~~~~  282 (299)
T d1zx5a1         228 NFGLEVVDVTGTAEIK---TGGVMNILYAAEGYFILR-GKETADLHRGYSCLVPASTDS  282 (299)
T ss_dssp             SEEEEEEEEEEEEEEE---CCSBCEEEEEEESCEEEE-SSSEEEECTTCEEEECTTCCE
T ss_pred             ceEEEEEEecCcEEec---cCCceEEEEEeccEEEEe-CCCEEEEcCCcEEEEecCCcc
Confidence            5777777776443322   223348899999999886 667789999999999998774

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.29  E-value=0.00059  Score=52.12  Aligned_cols=79  Identities=13%  Similarity=0.013  Sum_probs=59.6

Q ss_pred             eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-----EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000          179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD  253 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~  253 (259)
                      +.+-+.+..+|..=|.|-|+-+...+++++|...+.+.+     ...-.++++.+++|||+.|++.+.+++ ..++++=|
T Consensus        32 r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~-s~ll~l~~  110 (135)
T d2pa7a1          32 RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLAS  110 (135)
T ss_dssp             EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEES
T ss_pred             eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCC-cEEEEEcC
Confidence            444455677888888777777778999999999877765     233347889999999999999999754 67777666


Q ss_pred             cCCCC
Q 025000          254 VNRNP  258 (259)
Q Consensus       254 ~nr~~  258 (259)
                      -..+|
T Consensus       111 ~~y~~  115 (135)
T d2pa7a1         111 DYYDE  115 (135)
T ss_dssp             SCCCG
T ss_pred             CCCCh
Confidence            55543

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.16  E-value=0.0011  Score=53.56  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=61.6

Q ss_pred             EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEE---eC--------CEEEEccCCcEEEeCCC-
Q 025000          166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR---LG--------DSWYPVQAGDVLWMAPF-  233 (259)
Q Consensus       166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~---~~--------g~~~~v~~GD~i~~~~~-  233 (259)
                      ..|.|+-.+....+.+-.+...||..+|.|-|..| ..+.+|+|+-...   .+        .....+++||+.++.++ 
T Consensus        55 y~r~lLy~d~~~~f~i~~i~W~pG~~tpiHdH~~w-~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~  133 (192)
T d2gm6a1          55 YQQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVW-GLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTV  133 (192)
T ss_dssp             CEEEEEEECTTSSCEEEEEEECTTCBCCSBCCSSC-EEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTT
T ss_pred             eEEEEEEECCCCCEEEEEEecCCCCCCCCCCCCCc-eEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCC
Confidence            34555533333334455788899999998655444 8899999987553   22        24567899999999764 


Q ss_pred             -CceeEEeC-CCcc-EEE-EEEeecCC
Q 025000          234 -VPQWYAAL-GKTR-TRY-LLYKDVNR  256 (259)
Q Consensus       234 -~~H~~~n~-G~e~-~~f-i~~k~~nr  256 (259)
                       .-|.+.|. |+++ +++ +|-++++|
T Consensus       134 ~~IH~v~N~~~~~~avSLHvYg~~l~~  160 (192)
T d2gm6a1         134 GDIHRVHNAYDDRVSISIHVYGANIGG  160 (192)
T ss_dssp             BCCEEEEESCSSSCEEEEEEESSCGGG
T ss_pred             CceeEEecCCCCccEEEEEECCCCCCc
Confidence             57999996 6676 456 44557664

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=97.11  E-value=0.00095  Score=53.75  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             CcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEE-c---CC-------cEEEEeCCcEEEeCCC-CcEEEEeC--
Q 025000           61 SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTN-A---SG-------VSSKLMVDSYTYLPPN-FAHSLRAE--  125 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v-~---~g-------e~~~L~~Gd~i~~p~~-~~H~~~N~--  125 (259)
                      .+|+++++...||..++.|.| +..-++-||+|++..+. .   ++       .+..+.+|+..++.+. .-|++.|.  
T Consensus        64 ~~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~  143 (186)
T d3elna1          64 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  143 (186)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CCeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCC
Confidence            479999999999999999966 57889999999998764 1   11       3578999999998775 48999993  


Q ss_pred             -Ce-EEEEEEEEe
Q 025000          126 -GS-ATLVVFERR  136 (259)
Q Consensus       126 -~~-a~~l~v~~~  136 (259)
                       ++ +.+.++..+
T Consensus       144 ~~~avsLHvYspP  156 (186)
T d3elna1         144 TEPAVSLHLYSPP  156 (186)
T ss_dssp             SCCEEEEEEEESC
T ss_pred             CCCeEEEEEeCCC
Confidence             32 345555444

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0072  Score=54.36  Aligned_cols=72  Identities=8%  Similarity=0.013  Sum_probs=57.0

Q ss_pred             CcEEEEEEEecCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE
Q 025000           61 SHFVMYLANMQENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  135 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~  135 (259)
                      .++.+++..  .+.+...+   ..+++|++||-+|++.++. +=-...+++||+++||.|+.+++.-++++|.++++.
T Consensus       128 ~G~aihiy~--~n~sM~~~~f~NADGDeLi~~~~Gsg~l~T-efG~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE~  202 (439)
T d1eyba_         128 NGLAIHIFL--CNTSMENRCFYNSDGDFLIVPQKGNLLIYT-EFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEV  202 (439)
T ss_dssp             CCEEEEEEE--ECSCCCSEEEEESSEEEEEEEEESCEEEEE-TTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEEE
T ss_pred             cCcEEEEEe--cCCCCccceeEcCCCCEEEEEEeCcEEEEE-eeeEEEecCCcEEEecCceEEEEecCCCceEEEEee
Confidence            455555443  34445433   3789999999999999998 655789999999999999999888777899999875

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.005  Score=52.39  Aligned_cols=90  Identities=12%  Similarity=-0.040  Sum_probs=69.6

Q ss_pred             cCCceEEEEEeeCC-C---CCcceEEEEEEecCCcccCcceeeccceEEEEEEce-EEEEeC-CEEEEccCCcEEEeCCC
Q 025000          160 TPGEVFQLRKLLPQ-A---VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ-GIYRLG-DSWYPVQAGDVLWMAPF  233 (259)
Q Consensus       160 ~~g~~~~~~~l~p~-~---~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~-g~~~~~-g~~~~v~~GD~i~~~~~  233 (259)
                      .+|.++.++.++|. +   .+.-..+.-+.+.|+.-+|.|.|-++|=.=|||+|. ....+. |....+++||+-||.+|
T Consensus        15 ~~g~G~~v~R~~~~~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G~~~~i~~G~vq~mtAG   94 (288)
T d1j1la_          15 SEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAG   94 (288)
T ss_dssp             EETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEEEECTTCEEEEECT
T ss_pred             cccCCEEEEEeCCCCCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEecCCCCeeEecCCCEEEEecc
Confidence            35666777777653 2   233356677888888888887777887777999985 667775 89999999999999776


Q ss_pred             C--ceeEEeCCCccEEEE
Q 025000          234 V--PQWYAALGKTRTRYL  249 (259)
Q Consensus       234 ~--~H~~~n~G~e~~~fi  249 (259)
                      -  .|+=.|..++++++|
T Consensus        95 ~Gi~HsE~~~~~~~~~~l  112 (288)
T d1j1la_          95 RGILHAEMPCSEEPAHGL  112 (288)
T ss_dssp             TCEEEEEEECSSSCEEEE
T ss_pred             cceEecccccccccceee
Confidence            4  599999999998875

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0053  Score=50.50  Aligned_cols=78  Identities=15%  Similarity=0.005  Sum_probs=63.2

Q ss_pred             CCCCCc--ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCC--ceeEEeCCC-cc
Q 025000          172 PQAVPF--DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFV--PQWYAALGK-TR  245 (259)
Q Consensus       172 p~~~~~--~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~--~H~~~n~G~-e~  245 (259)
                      |.-+++  -++++--++.||+-.|.|.|.++|=.-|||+|+....+. |....+++||+-||.+|-  .|+=.|..+ ++
T Consensus        32 p~~~~fg~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~  111 (231)
T d1tq5a1          32 PNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTER  111 (231)
T ss_dssp             SSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCC
T ss_pred             ccccCCCceEEEecceecCCCCCCCCCcCCeeEEEEEEeEEEEECCCCCCcEEECCCcEEEEecCCcEEEEeeccccCCC
Confidence            444444  588999999999999998777887778999999999986 578899999999997764  499988644 46


Q ss_pred             EEEE
Q 025000          246 TRYL  249 (259)
Q Consensus       246 ~~fi  249 (259)
                      +.+|
T Consensus       112 ~~~l  115 (231)
T d1tq5a1         112 LHLY  115 (231)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6664

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=96.42  E-value=0.0035  Score=47.58  Aligned_cols=71  Identities=14%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             EEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEE-eCCcEEEeCCCCcEEEEe-CCeEEEEEE-EEecc
Q 025000           68 ANMQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKL-MVDSYTYLPPNFAHSLRA-EGSATLVVF-ERRYA  138 (259)
Q Consensus        68 ~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~g---e~~~L-~~Gd~i~~p~~~~H~~~N-~~~a~~l~v-~~~y~  138 (259)
                      ....+|.--+.| +....++++|++|.+.+.+.++   .++.+ +.+..+++|+|..|.+.+ +..+.+++. ...|.
T Consensus        37 ~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~s~ll~l~~~~y~  114 (135)
T d2pa7a1          37 FDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYD  114 (135)
T ss_dssp             ESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCCC
T ss_pred             ecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCCcEEEEEcCCCCC
Confidence            334556545667 4467889999999999988222   23344 778889999999999998 445555544 33443

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.23  E-value=0.0082  Score=54.22  Aligned_cols=65  Identities=11%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             CCCcEEEEEEEecCCCcCCC--CCCCceEEEEEEECEEEEEEcCC---cEEEEeCCcEEEeCCCCcEEEEe
Q 025000           59 MGSHFVMYLANMQENARSAL--PPHDVERFIFVVQGSAMLTNASG---VSSKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        59 ~g~~f~~~~~~l~Pg~~~~~--h~~~~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      ....|.+..+++.++.....  ...++-++++|++|++++.. .+   ++..|++|+++++|++..-.+.+
T Consensus       353 ~~~~F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~-~~~~~~~~~l~~G~~~fIpa~~~~~i~~  422 (440)
T d1pmia_         353 PIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQI-TGDDSTKQKIDTGYVFFVAPGSSIELTA  422 (440)
T ss_dssp             SSSSCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEE-TTCGGGCEEEETTCEEEECTTCCEEEEE
T ss_pred             CCCceEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEe-cCCCccEEEeCCceEEEEcCCceEEEEe
Confidence            34579999999987754321  23456689999999999998 44   36899999999999999888876

>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: PA5104-like
domain: Hypothetical protein PA5104
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.14  E-value=0.16  Score=40.67  Aligned_cols=144  Identities=14%  Similarity=0.024  Sum_probs=88.6

Q ss_pred             eEEEEecCCCC-CcEEEE--EEEecCCCcCCCCCCCceEEEEEEECE-EEEEEcCCcE-EEEeCCcEEEeCCCCcEEEEe
Q 025000           50 LGAYLITPAMG-SHFVMY--LANMQENARSALPPHDVERFIFVVQGS-AMLTNASGVS-SKLMVDSYTYLPPNFAHSLRA  124 (259)
Q Consensus        50 ~~~~l~sp~~g-~~f~~~--~~~l~Pg~~~~~h~~~~Eef~yVl~G~-l~v~v~~ge~-~~L~~Gd~i~~p~~~~H~~~N  124 (259)
                      +..+...|..+ .+|...  +.++...+.-+ ..++.+..+.||+|+ +++.. ++.. ..+.+++.+.|+.+.+-.-+-
T Consensus        23 T~Eia~~p~~~~~~f~wRiSiA~V~~~gpFS-~FpgidR~l~vl~G~g~~L~~-~~~~~~~~~~~~~~~F~Gd~~~~a~L  100 (195)
T d1ylla1          23 TEEIARDGGDGLDGFGWRLSIADVGESGGFS-GFAGYQRIISVLEGGGMRLRV-DGAESAPLRARQAFAFSGDSEVHCTL  100 (195)
T ss_dssp             EEEEEESSCSGGGSCSEEEEEEEECSCEEEC-CCTTCEEEEEEEESSCEEEEE-TTEECCCBCBTCCEEEETTSCEEEEE
T ss_pred             EEEEEEcCCCCcCCceEEEEEeEecCCCCCC-CCCCccEEEEEEECCeEEEEE-CCccEeecCCCCccCcCCCCcEEEEe
Confidence            44444456433 245443  44444332222 247899999999998 89998 7765 467999999999888877664


Q ss_pred             -CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceE
Q 025000          125 -EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG  203 (259)
Q Consensus       125 -~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~  203 (259)
                       +++++-+-++.+  +-.      .               ....+++.-.                +.... +.......
T Consensus       101 ~~Gpi~dfNlM~r--r~~------~---------------~a~~~~~~~~----------------~~~~~-~~~a~~~l  140 (195)
T d1ylla1         101 LDGAIRDFNLIYA--PRR------H---------------RARLQWLRVE----------------GELDW-HGTASTLL  140 (195)
T ss_dssp             SSSCEEEEEEEEC--TTT------E---------------EEEEEEEEEE----------------EEEEE-EECCSEEE
T ss_pred             CCCCEEEEEEEEe--CCc------c---------------EEEEEEEecC----------------Cceee-cCCCCEEE
Confidence             778887777543  211      0               0111221100                00000 11111235


Q ss_pred             EEEEEceEEEEeCCE-EEEccCCcEEEeCCCCc
Q 025000          204 LLLLEGQGIYRLGDS-WYPVQAGDVLWMAPFVP  235 (259)
Q Consensus       204 ~~il~G~g~~~~~g~-~~~v~~GD~i~~~~~~~  235 (259)
                      +|+++|+..+.++|. ...+.+||.+++.....
T Consensus       141 l~~~~G~~~v~~~g~~~~~L~~~d~L~~~~~~~  173 (195)
T d1ylla1         141 LFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQG  173 (195)
T ss_dssp             EEESSSCEEEEETTEEEEEECTTCEEEEESCCS
T ss_pred             EEEccCcEEEEcCCCceEecCCCcEEEEeCCCC
Confidence            889999999999875 56899999999976544

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=95.95  E-value=0.019  Score=45.66  Aligned_cols=80  Identities=18%  Similarity=0.139  Sum_probs=57.8

Q ss_pred             EEEeeC-CCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEe-----CC-------EEEEccCCcEEEeCC
Q 025000          167 LRKLLP-QAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL-----GD-------SWYPVQAGDVLWMAP  232 (259)
Q Consensus       167 ~~~l~p-~~~~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~-----~g-------~~~~v~~GD~i~~~~  232 (259)
                      .|.|+- .+..  +.+-.+...||..+|. |-|. +.=.+-||+|+...+.     ++       ....+++||+.++.+
T Consensus        55 ~R~li~~~~~~--fel~li~W~pGq~tpi-HDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~  131 (186)
T d3elna1          55 TRNLVDQGNGK--FNLMILCWGEGHGSSI-HDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYIND  131 (186)
T ss_dssp             EEEEEECGGGT--CEEEEEEECTTCBCCE-ECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECT
T ss_pred             EEEEEEcCCCC--eEEEEEEccCCCcCCC-ccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCC
Confidence            355553 3334  4455789999999997 6665 4455789999987653     22       468889999999887


Q ss_pred             C-CceeEEeCC-CccEEEE
Q 025000          233 F-VPQWYAALG-KTRTRYL  249 (259)
Q Consensus       233 ~-~~H~~~n~G-~e~~~fi  249 (259)
                      . .-|.+.|.+ ++++..|
T Consensus       132 ~~~iH~v~N~~~~~~avsL  150 (186)
T d3elna1         132 SIGLHRVENVSHTEPAVSL  150 (186)
T ss_dssp             TTCEEEEECCCSSCCEEEE
T ss_pred             CCCcceeecCCCCCCeEEE
Confidence            6 479999998 4776554

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.70  E-value=0.02  Score=49.14  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=50.3

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCc-EEEEeCCeEEEEE
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRAEGSATLVV  132 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~-H~~~N~~~a~~l~  132 (259)
                      ..|.+.++++...  ......++-.+++|++|++++.. ++++..|++|+++++|++.. .+++  +.+++++
T Consensus       245 ~~F~~~~~~~~~~--~~~~~~~~~~il~vi~G~~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i~--G~~~ll~  312 (315)
T d1qwra_         245 EYFSVYKWDINGE--AEMAQDESFLICSVIEGSGLLKY-EDKTCPLKKGDHFILPAQMPDFTIK--GTCTLIV  312 (315)
T ss_dssp             SSCEEEEEEEEEE--EEECCCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTCCCEEEE--EEEEEEE
T ss_pred             CcEEEEEEEecCc--EEeccCCCcEEEEEEeCeEEEEE-CCEEEEEecCcEEEEECCCCCEEEE--eeEEEEE
Confidence            4688888888632  22223345688999999999998 89999999999999999874 4554  3566654

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=95.60  E-value=0.042  Score=45.87  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=43.6

Q ss_pred             cCCCcCCCCCCCceEEEEEEECEEEEEEcC--------------------------------------CcEEEEeCCcEE
Q 025000           71 QENARSALPPHDVERFIFVVQGSAMLTNAS--------------------------------------GVSSKLMVDSYT  112 (259)
Q Consensus        71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~--------------------------------------ge~~~L~~Gd~i  112 (259)
                      .+|++.+.|....+-|+..++|+=+..+-.                                      -.+.+|+|||.+
T Consensus       130 ~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDvL  209 (319)
T d1vrba1         130 KNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTML  209 (319)
T ss_dssp             CSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEE
T ss_pred             CCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCEE
Confidence            344445677677799999999988776611                                      023589999999


Q ss_pred             EeCCCCcEEEEeCCe
Q 025000          113 YLPPNFAHSLRAEGS  127 (259)
Q Consensus       113 ~~p~~~~H~~~N~~~  127 (259)
                      |+|+|-.|..+|.++
T Consensus       210 YiP~gw~H~v~s~~~  224 (319)
T d1vrba1         210 YLPRGLWHSTKSDQA  224 (319)
T ss_dssp             EECTTCEEEEECSSC
T ss_pred             EeCCCceEEeEecCC
Confidence            999999999999543

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.05  E-value=0.056  Score=38.24  Aligned_cols=62  Identities=11%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLV  131 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l  131 (259)
                      +-.|.||.-. . .-...|..-|++|++++.+ .|  ++.+.++|+++.+|++....++-.+.+..+
T Consensus        26 lGVm~pGeY~-F-~T~~~E~MeivsG~l~V~l-pg~~ew~~~~~G~sF~Vpans~F~ikv~~~~~Y~   89 (93)
T d2oyza1          26 VGVMLPGEYT-F-GTQAPERMTVVKGALVVKR-VGEADWTTYSSGESFDVEGNSSFELQVKDATAYL   89 (93)
T ss_dssp             EEEECSEEEE-E-EESSCEEEEEEESEEEEEE-TTCSSCEEEETTCEEEECSSEEEEEEESSCEEEE
T ss_pred             EEEEeccEEE-E-cCCCCEEEEEEeeEEEEEC-CCCcccEEeCCCCeEEECCCCEEEEEECcceeeE
Confidence            3445677422 1 1245788899999999999 54  568999999999999999999976555444

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.028  Score=44.30  Aligned_cols=54  Identities=11%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             cCCcccCcceeeccceEEEEEEceEEEEe--C----CE--EEEccCCcEEEeCCCCceeEEeC
Q 025000          187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--G----DS--WYPVQAGDVLWMAPFVPQWYAAL  241 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~----g~--~~~v~~GD~i~~~~~~~H~~~n~  241 (259)
                      -|....-| |-..-||-+|-|+|...+.+  +    |+  .++|++||+...|+++||+-.-.
T Consensus        41 GPN~R~Dy-H~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~  102 (175)
T d1zvfa1          41 GPNERTDY-HINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  102 (175)
T ss_dssp             SSBCCSCE-EECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCCccccc-ccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCC
Confidence            34445555 44455688999999998765  3    33  88899999999999999997653

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=94.87  E-value=0.014  Score=49.97  Aligned_cols=70  Identities=4%  Similarity=-0.018  Sum_probs=51.8

Q ss_pred             eEEEEEEecCCcccCcceeecc----------ceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEE
Q 025000          179 FNIHIMDFQPGDFLNVKEVHYN----------QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY  248 (259)
Q Consensus       179 ~~~~~~t~~PG~~~~~~~~H~~----------eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f  248 (259)
                      ..++++.+.||+.|+.|.-+..          =|+-++..-...+.++++.++.++|.+-|+....+|+..|.|+++=.-
T Consensus        91 ~r~~rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dRIH  170 (290)
T d1e5ra_          91 LQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQS  170 (290)
T ss_dssp             EEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCCE
T ss_pred             eeeeeeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEEEECCEEEECCCCeEEEEcCCCeEEEECCCCCceEE
Confidence            3455677889999986322110          033334445678899999999999999999999999999999976333

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=94.28  E-value=0.081  Score=44.02  Aligned_cols=25  Identities=8%  Similarity=-0.002  Sum_probs=22.7

Q ss_pred             EEEccCCcEEEeCCCCceeEEeCCC
Q 025000          219 WYPVQAGDVLWMAPFVPQWYAALGK  243 (259)
Q Consensus       219 ~~~v~~GD~i~~~~~~~H~~~n~G~  243 (259)
                      ...++|||++|+|+|..|+..|.++
T Consensus       200 ~~~L~pGDvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         200 IVNLTPGTMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             EEEECTTCEEEECTTCEEEEECSSC
T ss_pred             EEEECCCCEEEeCCCceEEeEecCC
Confidence            4679999999999999999999875

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=94.06  E-value=0.042  Score=43.19  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=39.2

Q ss_pred             cccCcceeeccceEEEEEEceEEEEe--CC--EEEEccCCcEEEeCCCCceeEEe
Q 025000          190 DFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAA  240 (259)
Q Consensus       190 ~~~~~~~~H~~eh~~~il~G~g~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n  240 (259)
                      ...-| |-..-||-+|-|+|...+.+  +|  +.+++++||+..+|+++||+-.-
T Consensus        46 ~R~Dy-H~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR   99 (174)
T d1yfua1          46 HRTDY-HDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQR   99 (174)
T ss_dssp             CCCCE-EECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEB
T ss_pred             ccCcc-ccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCccc
Confidence            33444 34455688999999997766  34  67899999999999999999865

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.60  E-value=0.12  Score=43.80  Aligned_cols=60  Identities=12%  Similarity=0.228  Sum_probs=44.5

Q ss_pred             CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcE-EEEe
Q 025000           61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH-SLRA  124 (259)
Q Consensus        61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H-~~~N  124 (259)
                      ..|.+.++++......  ...+.-++++|++|++++.  ++++..|++|+++++|++... +++.
T Consensus       227 ~~F~~~~~~~~~~~~~--~~~~~~~il~~~~G~~~i~--~~~~~~l~~G~s~~iPA~~~~~~i~g  287 (299)
T d1zx5a1         227 ENFGLEVVDVTGTAEI--KTGGVMNILYAAEGYFILR--GKETADLHRGYSCLVPASTDSFTVES  287 (299)
T ss_dssp             SSEEEEEEEEEEEEEE--ECCSBCEEEEEEESCEEEE--SSSEEEECTTCEEEECTTCCEEEEEE
T ss_pred             cceEEEEEEecCcEEe--ccCCceEEEEEeccEEEEe--CCCEEEEcCCcEEEEecCCccEEEEc
Confidence            4688888887533221  1235568899999999875  678899999999999999865 4544

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.1  Score=44.43  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=24.9

Q ss_pred             EEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000          218 SWYPVQAGDVLWMAPFVPQWYAALGKTRTR  247 (259)
Q Consensus       218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~  247 (259)
                      -...++|||++|+|+|-.|...|..+..+.
T Consensus       247 ~~~~l~pGd~L~iP~~w~H~V~~~~~~~~s  276 (335)
T d1h2ka_         247 YETVVGPGDVLYIPMYWWHHIESLLNGGIT  276 (335)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTTSCCE
T ss_pred             eEEEECCCCEEeeCCCCeEEEEEcCCCCeE
Confidence            346789999999999999999998664443

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=92.55  E-value=0.26  Score=39.02  Aligned_cols=64  Identities=8%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             cCCcccCccee---eccceEEEEEEceEEEEe---C------CEEE----EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          187 QPGDFLNVKEV---HYNQHGLLLLEGQGIYRL---G------DSWY----PVQAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~---H~~eh~~~il~G~g~~~~---~------g~~~----~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+|.-=|.|-+   +.+...++|++|+....+   .      |+|.    ..+.+..+|+|+|+-|||.+.++ +..++|
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~-~t~i~Y  132 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISD-EATLCY  132 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS-EEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCc-hheeEE
Confidence            57776676532   345578999999997665   1      2333    55788999999999999999874 334444


Q ss_pred             E
Q 025000          251 Y  251 (259)
Q Consensus       251 ~  251 (259)
                      +
T Consensus       133 ~  133 (190)
T d2c0za1         133 L  133 (190)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.92  E-value=0.22  Score=41.37  Aligned_cols=72  Identities=8%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             EEecCCcccCcceeecc--ceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC--CCccEEE-EEEeecCC
Q 025000          184 MDFQPGDFLNVKEVHYN--QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL--GKTRTRY-LLYKDVNR  256 (259)
Q Consensus       184 ~t~~PG~~~~~~~~H~~--eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~f-i~~k~~nr  256 (259)
                      ++|+.+..++. +.--+  |=++..|.|+|.+.+||+.+++.+.|.+|++.|...=.-..  ...+.+| |++-.+++
T Consensus        57 l~l~~~~~~~~-~~flerRElgiVnigG~g~V~VDG~~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~SAPAh~  133 (260)
T d1ywka1          57 LEIILDKELGV-DYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVPAHH  133 (260)
T ss_dssp             EECCCSGGGTS-SSTTTTEEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECSS
T ss_pred             eeccCchhccc-hhhhhhcEEEEEEeCCcEEEEECCEEEecCCCcEEEECCCCceEEEeccCCCCCcEEEEEeeccCC
Confidence            45555666553 33222  34578899999999999999999999999999876333222  2345555 55655554

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=90.89  E-value=0.28  Score=34.66  Aligned_cols=56  Identities=18%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             CCC--CCCceEEEEEEECEEEEEE-cC------CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000           77 ALP--PHDVERFIFVVQGSAMLTN-AS------GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV  132 (259)
Q Consensus        77 ~~h--~~~~Eef~yVl~G~l~v~v-~~------ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~  132 (259)
                      ..|  ..+.=.-+-||+|+++... .+      ++...+.+|+...+||...|++.-..++++.+
T Consensus        26 ~~HnTK~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~f~v   90 (96)
T d3dl3a1          26 THHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFNI   90 (96)
T ss_dssp             SSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEEE
T ss_pred             hhcCCCCceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeEEEE
Confidence            445  3677778899999999842 11      25689999999999999999998655566543

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.50  E-value=0.26  Score=38.80  Aligned_cols=64  Identities=11%  Similarity=0.176  Sum_probs=42.5

Q ss_pred             cCCcccCcceee--ccceEEEEEEceEEEE-eC--------CEEE--EccC--CcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          187 QPGDFLNVKEVH--YNQHGLLLLEGQGIYR-LG--------DSWY--PVQA--GDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       187 ~PG~~~~~~~~H--~~eh~~~il~G~g~~~-~~--------g~~~--~v~~--GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .+|.-=|.|-+.  .+...++|++|+.... +|        |+|.  .+.+  +..+|+|+|+.|||...++ +..++|+
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~-~~~v~Y~  135 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSE-YAEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS-EEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCC-ceEEEec
Confidence            567776665332  3446699999998532 22        4554  4444  5589999999999999964 3344443

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=90.42  E-value=1.1  Score=34.75  Aligned_cols=59  Identities=12%  Similarity=0.168  Sum_probs=42.2

Q ss_pred             ecCCcccCccee---eccceEEEEEEceEEEEe---------CCEEEE--c--cCCcEEEeCCCCceeEEeCCCc
Q 025000          186 FQPGDFLNVKEV---HYNQHGLLLLEGQGIYRL---------GDSWYP--V--QAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       186 ~~PG~~~~~~~~---H~~eh~~~il~G~g~~~~---------~g~~~~--v--~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      -.+|.-=|.|-|   +.+...++|++|+....+         -|+|..  +  ..+..+|+|+|+.|||.+..++
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~  126 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS  126 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeecccc
Confidence            367877776544   234457899999997655         144443  2  4566999999999999999763

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.28  E-value=0.32  Score=41.20  Aligned_cols=53  Identities=13%  Similarity=0.187  Sum_probs=40.8

Q ss_pred             CCCcCCCCCCCceEEEEEEECEEEEEEc---------------------------------------CCcEEEEeCCcEE
Q 025000           72 ENARSALPPHDVERFIFVVQGSAMLTNA---------------------------------------SGVSSKLMVDSYT  112 (259)
Q Consensus        72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v~---------------------------------------~ge~~~L~~Gd~i  112 (259)
                      +|..++.|....+-++.+++|+=.+.+-                                       -.-..+|++||.+
T Consensus       178 ~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~pGd~L  257 (335)
T d1h2ka_         178 EGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVL  257 (335)
T ss_dssp             TTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECTTCEE
T ss_pred             CCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECCCCEE
Confidence            3444466766678999999998776651                                       0123589999999


Q ss_pred             EeCCCCcEEEEe
Q 025000          113 YLPPNFAHSLRA  124 (259)
Q Consensus       113 ~~p~~~~H~~~N  124 (259)
                      |+|++--|..+|
T Consensus       258 ~iP~~w~H~V~~  269 (335)
T d1h2ka_         258 YIPMYWWHHIES  269 (335)
T ss_dssp             EECTTCEEEEEE
T ss_pred             eeCCCCeEEEEE
Confidence            999999999999

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.41  E-value=1.5  Score=34.70  Aligned_cols=65  Identities=11%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             cCCcccCcceee---ccceEEEEEEceEEEEe-C--------CEE--EEccC--CcEEEeCCCCceeEEeCCC-ccEEEE
Q 025000          187 QPGDFLNVKEVH---YNQHGLLLLEGQGIYRL-G--------DSW--YPVQA--GDVLWMAPFVPQWYAALGK-TRTRYL  249 (259)
Q Consensus       187 ~PG~~~~~~~~H---~~eh~~~il~G~g~~~~-~--------g~~--~~v~~--GD~i~~~~~~~H~~~n~G~-e~~~fi  249 (259)
                      .+|.-=|.|-+.   .+...++|++|+....+ |        |++  ..+..  +-.||+|+|+-|||.+.++ .-+.|+
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            788877776444   34466899999997664 2        344  34444  4599999999999999965 334444


Q ss_pred             EE
Q 025000          250 LY  251 (259)
Q Consensus       250 ~~  251 (259)
                      +.
T Consensus       134 ~s  135 (198)
T d2ixca1         134 CS  135 (198)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=88.32  E-value=0.16  Score=43.12  Aligned_cols=74  Identities=18%  Similarity=0.081  Sum_probs=51.9

Q ss_pred             cEEEEEEEecCCCcCCCCCCCce---------EEEEEEE--CEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEE
Q 025000           62 HFVMYLANMQENARSALPPHDVE---------RFIFVVQ--GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSAT  129 (259)
Q Consensus        62 ~f~~~~~~l~Pg~~~~~h~~~~E---------ef~yVl~--G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~  129 (259)
                      .....++.+.||+...+|....+         .+-+.|.  -.+...+ +++++.+++|++.++..+.+|...| ....|
T Consensus        90 ~~r~~rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v-~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dR  168 (290)
T d1e5ra_          90 HLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSN-EDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEE-TTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             eeeeeeeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEEEE-CCEEEECCCCeEEEEcCCCeEEEECCCCCce
Confidence            45566777889887766642111         2233332  3467788 9999999999999999999999999 44567


Q ss_pred             EEEEEEe
Q 025000          130 LVVFERR  136 (259)
Q Consensus       130 ~l~v~~~  136 (259)
                      +.++.--
T Consensus       169 IHLViD~  175 (290)
T d1e5ra_         169 QSLCVDF  175 (290)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEe
Confidence            7766443

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=88.17  E-value=1.2  Score=31.26  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=36.6

Q ss_pred             eEEEEEEceEEEEe----CC----EEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000          202 HGLLLLEGQGIYRL----GD----SWYPVQAGDVLWMAPFVPQWYAALGKTR  245 (259)
Q Consensus       202 h~~~il~G~g~~~~----~g----~~~~v~~GD~i~~~~~~~H~~~n~G~e~  245 (259)
                      --+-||+|+..|..    ++    ++.-+.+|+.-+++|...|-++-++|..
T Consensus        36 g~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~   87 (96)
T d3dl3a1          36 GQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQ   87 (96)
T ss_dssp             EEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCE
T ss_pred             EEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeE
Confidence            44789999999962    22    7899999999999999999999766654

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=88.17  E-value=0.81  Score=31.95  Aligned_cols=60  Identities=13%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             cCCcccCcceeeccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000          187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY  251 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~  251 (259)
                      .||..   .=.-...|.+=|++|+..+.|.|  +|...++|+..-+|++..=.++..  ++.-|+|.
T Consensus        30 ~pGeY---~F~T~~~E~MeivsG~l~V~lpg~~ew~~~~~G~sF~Vpans~F~ikv~--~~~~Y~C~   91 (93)
T d2oyza1          30 LPGEY---TFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVK--DATAYLCE   91 (93)
T ss_dssp             CSEEE---EEEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEES--SCEEEEEE
T ss_pred             eccEE---EEcCCCCEEEEEEeeEEEEECCCCcccEEeCCCCeEEECCCCEEEEEEC--cceeeEEE
Confidence            47763   23345568999999999999997  899999999999999998888874  88889985

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.68  E-value=0.65  Score=36.30  Aligned_cols=63  Identities=8%  Similarity=0.049  Sum_probs=41.4

Q ss_pred             cCCcccCcceee--ccceEEEEEEceEEEEeC---------CEE--EEc--cCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000          187 QPGDFLNVKEVH--YNQHGLLLLEGQGIYRLG---------DSW--YPV--QAGDVLWMAPFVPQWYAALGKTRTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~H--~~eh~~~il~G~g~~~~~---------g~~--~~v--~~GD~i~~~~~~~H~~~n~G~e~~~fi~  250 (259)
                      .+|.-=+.|-+.  .+...++|++|+....+=         |+|  ..+  +.+..+|+|+|+.|||.+.+++ ..++|
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y  131 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNY  131 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc-eEEEE
Confidence            567666654332  345679999999854431         333  334  3355999999999999999653 44443

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=0.78  Score=32.99  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             CCceEEEEEEECEEEEE-EcC------CcEEEEeCCcEEEeCCCCcEEEEe-CCeEEE
Q 025000           81 HDVERFIFVVQGSAMLT-NAS------GVSSKLMVDSYTYLPPNFAHSLRA-EGSATL  130 (259)
Q Consensus        81 ~~~Eef~yVl~G~l~v~-v~~------ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~  130 (259)
                      .+.=.-+-||+|+++.. +.+      ++...+++|+...+||...|++.. +.++++
T Consensus        37 ~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f   94 (109)
T d3bb6a1          37 PGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYF   94 (109)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEE
T ss_pred             CcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEE
Confidence            56777789999999975 211      245789999999999999999996 333444

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=0.97  Score=37.67  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=42.4

Q ss_pred             eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC--CccE-EEEEEeecCCC
Q 025000          202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG--KTRT-RYLLYKDVNRN  257 (259)
Q Consensus       202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G--~e~~-~fi~~k~~nr~  257 (259)
                      =++..|.|+|.+.+||+.+++.+.|.+|++.|..+-.-...  ..+. -||++-.+.|.
T Consensus        78 lgiVnlgG~g~V~VDG~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAPAh~~  136 (277)
T d1xrua1          78 LGVINIGGAGTITVDGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHTT  136 (277)
T ss_dssp             EEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECSSC
T ss_pred             EEEEEeCCCEEEEECCEEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEecccCCC
Confidence            34788999999999999999999999999999776554322  2444 44666666553

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.66  E-value=1.3  Score=34.50  Aligned_cols=64  Identities=11%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             cCCcccCcceee---ccceEEEEEEceEEEEe-C--------CEE--EEccC--CcEEEeCCCCceeEEeCCCc-cEEEE
Q 025000          187 QPGDFLNVKEVH---YNQHGLLLLEGQGIYRL-G--------DSW--YPVQA--GDVLWMAPFVPQWYAALGKT-RTRYL  249 (259)
Q Consensus       187 ~PG~~~~~~~~H---~~eh~~~il~G~g~~~~-~--------g~~--~~v~~--GD~i~~~~~~~H~~~n~G~e-~~~fi  249 (259)
                      .+|.-=|.|-+-   .+...+.|++|+....+ |        |++  ..+.+  +..+|+|+||.|||.+.+++ -+.|+
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            688777764332   24467999999997544 1        344  45544  45999999999999999652 34444


Q ss_pred             E
Q 025000          250 L  250 (259)
Q Consensus       250 ~  250 (259)
                      +
T Consensus       135 ~  135 (183)
T d1dzra_         135 A  135 (183)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=86.11  E-value=1.7  Score=34.45  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=42.6

Q ss_pred             EecCCcccCcceeec---cceEEEEEEceEEEEe---------CCEEE----EccCCcEEEeCCCCceeEEeCCCc
Q 025000          185 DFQPGDFLNVKEVHY---NQHGLLLLEGQGIYRL---------GDSWY----PVQAGDVLWMAPFVPQWYAALGKT  244 (259)
Q Consensus       185 t~~PG~~~~~~~~H~---~eh~~~il~G~g~~~~---------~g~~~----~v~~GD~i~~~~~~~H~~~n~G~e  244 (259)
                      .=.+|.-=|.|-+..   +...++|++|+....+         -|+|.    .-+.+..+|+|+|+-|||.+..+.
T Consensus        53 ~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~  128 (202)
T d1oi6a_          53 MSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD  128 (202)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT
T ss_pred             cchhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeecccc
Confidence            336787767653322   4477899999997666         24554    334556999999999999999753

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.37  E-value=2.4  Score=30.17  Aligned_cols=66  Identities=9%  Similarity=-0.029  Sum_probs=44.7

Q ss_pred             EEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcE---EEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE
Q 025000           68 ANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVS---SKLMVDSYTYLPPNFAHSLRAEGSATLVVFER  135 (259)
Q Consensus        68 ~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~---~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~  135 (259)
                      -.+++|.-.-......+.+++|++|.+++.. .+|+.   ..+.+||++-.+  .+...+..++++++.+.+
T Consensus        25 ~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~--~~~~v~A~~~s~v~~i~~   94 (132)
T d1ft9a2          25 KIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH--SGCLVEATERTEVRFADI   94 (132)
T ss_dssp             EEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC--SSCEEEESSCEEEEEECH
T ss_pred             EEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc--ccccceeccceeeeeehH
Confidence            3455665442223456889999999999866 34544   478999976544  456666777888888743

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=84.93  E-value=1.7  Score=33.47  Aligned_cols=69  Identities=25%  Similarity=0.495  Sum_probs=44.5

Q ss_pred             cCCCcCCCC----CCCceEEEEEEECEEEEEEcC--------Cc--EEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           71 QENARSALP----PHDVERFIFVVQGSAMLTNAS--------GV--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        71 ~Pg~~~~~h----~~~~Eef~yVl~G~l~v~v~~--------ge--~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      .+|---+.|    .+....+++|++|++...+-|        |+  ...|.+  +..+++|+|..|.+.. +..+.++..
T Consensus        53 ~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~  132 (176)
T d1wlta1          53 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  132 (176)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             chheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEe
Confidence            444333555    235668999999999766511        22  356664  4589999999999998 444555443


Q ss_pred             -EEeccc
Q 025000          134 -ERRYAS  139 (259)
Q Consensus       134 -~~~y~p  139 (259)
                       ...|.|
T Consensus       133 ~~~~y~p  139 (176)
T d1wlta1         133 THNEYSP  139 (176)
T ss_dssp             ESSCCCG
T ss_pred             cCCccCh
Confidence             334554

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.37  E-value=2.1  Score=33.65  Aligned_cols=69  Identities=19%  Similarity=0.268  Sum_probs=46.1

Q ss_pred             cCCCcCCCCC----CCceEEEEEEECEEEEEEcC--------Cc--EEEEeCCc--EEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           71 QENARSALPP----HDVERFIFVVQGSAMLTNAS--------GV--SSKLMVDS--YTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        71 ~Pg~~~~~h~----~~~Eef~yVl~G~l~v~v~~--------ge--~~~L~~Gd--~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      .+|---+.|.    .....+++|++|++...+-|        |+  ...|.+.+  ++++|+|..|.|.. +..+.++..
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            4443335551    35789999999999766511        22  36777754  99999999999998 444555544


Q ss_pred             -EEeccc
Q 025000          134 -ERRYAS  139 (259)
Q Consensus       134 -~~~y~p  139 (259)
                       ...|.|
T Consensus       134 ~s~~y~p  140 (198)
T d2ixca1         134 CSAEYNP  140 (198)
T ss_dssp             ESSCCCT
T ss_pred             cCCccCH
Confidence             445555

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.13  E-value=1.1  Score=32.35  Aligned_cols=68  Identities=13%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEc--------CC---cEEEEeCCcEE-----EeCCCCcEEEEeCCeEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNA--------SG---VSSKLMVDSYT-----YLPPNFAHSLRAEGSATL  130 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~--------~g---e~~~L~~Gd~i-----~~p~~~~H~~~N~~~a~~  130 (259)
                      ...++||.-.-........+++|++|++++...        ++   ....+++|+++     +-..-...+.+..+++++
T Consensus        27 ~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~~~  106 (147)
T d1cx4a2          27 TKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKC  106 (147)
T ss_dssp             EEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCSSEEEEEEEEEE
T ss_pred             EEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCceEEEEECCCEEE
Confidence            445667754422234568999999999998641        11   13467889976     223333445555567777


Q ss_pred             EEEE
Q 025000          131 VVFE  134 (259)
Q Consensus       131 l~v~  134 (259)
                      +.+.
T Consensus       107 ~~i~  110 (147)
T d1cx4a2         107 LAMD  110 (147)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7774

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.70  E-value=0.87  Score=33.07  Aligned_cols=68  Identities=9%  Similarity=0.028  Sum_probs=44.3

Q ss_pred             EEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEE-----eCCCCcEEEEeCCeEEEEEEE
Q 025000           66 YLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTY-----LPPNFAHSLRAEGSATLVVFE  134 (259)
Q Consensus        66 ~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~-----~p~~~~H~~~N~~~a~~l~v~  134 (259)
                      ....++||...-......+.+++|++|++++.. .++. ..|++||++=     -..-...+.+..+++.++.+.
T Consensus        44 ~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~-~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~  117 (136)
T d1ne6a1          44 FPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGID  117 (136)
T ss_dssp             EEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TTEEEEEECTTCEECCHHHHHCCCCCSEEEESSCEEEEEEE
T ss_pred             EEEEECCCCEEEeCCCCcceeeeecCCceeeec-cccccceeccccccccHHHcCCCcceEEEEEccCEEEEEEE
Confidence            345667776542223445789999999999998 6654 5899999762     222223445556677777764

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=82.13  E-value=0.85  Score=35.99  Aligned_cols=63  Identities=11%  Similarity=0.087  Sum_probs=42.8

Q ss_pred             cCCcccCcceeeccceEEEEE-EceEEEEeCC----------EEEEccCCcEEEeCCCCceeEEeCCCc-cEEEEE
Q 025000          187 QPGDFLNVKEVHYNQHGLLLL-EGQGIYRLGD----------SWYPVQAGDVLWMAPFVPQWYAALGKT-RTRYLL  250 (259)
Q Consensus       187 ~PG~~~~~~~~H~~eh~~~il-~G~g~~~~~g----------~~~~v~~GD~i~~~~~~~H~~~n~G~e-~~~fi~  250 (259)
                      .+|.-=|.| -|.++..++++ .|+....+.+          ....+..+..||+|+|+-|||....++ -+.|++
T Consensus        65 ~kgvlRGlH-~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~  139 (194)
T d1nxma_          65 RKNVLRGLH-AEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLV  139 (194)
T ss_dssp             ETTBEEEEE-ECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             eeeEEEEEE-eccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEec
Confidence            567766664 44555556565 5876555432          246678899999999999999999763 334444

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.77  E-value=1.7  Score=33.82  Aligned_cols=69  Identities=17%  Similarity=0.294  Sum_probs=45.6

Q ss_pred             cCCCcCCCCC----CCceEEEEEEECEEEEEEcC--------C--cEEEEeCC--cEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           71 QENARSALPP----HDVERFIFVVQGSAMLTNAS--------G--VSSKLMVD--SYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        71 ~Pg~~~~~h~----~~~Eef~yVl~G~l~v~v~~--------g--e~~~L~~G--d~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      .+|---+.|.    +....+++|++|.+...+-|        |  ....|.+.  .++|+|+|..|.|.. +..+.++..
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            4554345662    24568999999999765512        2  33677765  499999999999998 444555444


Q ss_pred             -EEeccc
Q 025000          134 -ERRYAS  139 (259)
Q Consensus       134 -~~~y~p  139 (259)
                       ...|.|
T Consensus       135 ~~~~y~p  141 (183)
T d1dzra_         135 ATNYYSP  141 (183)
T ss_dssp             ESSCCCT
T ss_pred             CCcccCc
Confidence             444544

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.67  E-value=0.98  Score=34.50  Aligned_cols=68  Identities=18%  Similarity=0.118  Sum_probs=44.7

Q ss_pred             EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEE---eCCCC--cEEEEeCCeEEEEEEE
Q 025000           67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTY---LPPNF--AHSLRAEGSATLVVFE  134 (259)
Q Consensus        67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~---~p~~~--~H~~~N~~~a~~l~v~  134 (259)
                      ...+.||...-......+.+++|++|++.+...+++...|++|+++=   +-.+.  .++++..+.+.++.+.
T Consensus        93 ~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~  165 (193)
T d1q3ea_          93 FEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLS  165 (193)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEE
T ss_pred             HHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeeeeeeccCCCcccccceecCceEEEEEe
Confidence            44556775443333456899999999999887455667999999872   11233  3455566777777764

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=80.97  E-value=3  Score=29.70  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=41.9

Q ss_pred             eEEEEEEceEEEEe--C------CEEEEccCCcEEEeCCCCceeEEeCCC-c--cEEEEEEeec
Q 025000          202 HGLLLLEGQGIYRL--G------DSWYPVQAGDVLWMAPFVPQWYAALGK-T--RTRYLLYKDV  254 (259)
Q Consensus       202 h~~~il~G~g~~~~--~------g~~~~v~~GD~i~~~~~~~H~~~n~G~-e--~~~fi~~k~~  254 (259)
                      --+-||+|+..|..  |      +++.-+++|+.-+++|..+|.++..++ .  -+.|.|=+|+
T Consensus        41 g~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v~Fy~~pe~  104 (109)
T d3bb6a1          41 PRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEV  104 (109)
T ss_dssp             EEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEECHHH
T ss_pred             EEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEEEEEECCcc
Confidence            45889999999862  1      367889999999999999999999875 3  3567766553

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=2.2  Score=29.90  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             EecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEEeCCcEE----EeCCCCcEE--EEeCCeEEEEEEE
Q 025000           69 NMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYT----YLPPNFAHS--LRAEGSATLVVFE  134 (259)
Q Consensus        69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~---~~L~~Gd~i----~~p~~~~H~--~~N~~~a~~l~v~  134 (259)
                      .+++|...-......+.+++|++|.+++..  .+|+.   ..+++||++    .+..+.++.  .+..++++++.+.
T Consensus        17 ~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~   93 (132)
T d1i5za2          17 KYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEIS   93 (132)
T ss_dssp             EECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCEEEEEEE
T ss_pred             EECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEEEEccceEEEEEc
Confidence            455554332223457899999999999876  23443   467899986    243444443  3347788888774

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=80.36  E-value=4.4  Score=31.47  Aligned_cols=63  Identities=19%  Similarity=0.358  Sum_probs=42.1

Q ss_pred             cCCCcCCCC----CCCceEEEEEEECEEEEEEcC--------Cc--EEEE--eCCcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000           71 QENARSALP----PHDVERFIFVVQGSAMLTNAS--------GV--SSKL--MVDSYTYLPPNFAHSLRA-EGSATLVVF  133 (259)
Q Consensus        71 ~Pg~~~~~h----~~~~Eef~yVl~G~l~v~v~~--------ge--~~~L--~~Gd~i~~p~~~~H~~~N-~~~a~~l~v  133 (259)
                      .+|---+.|    .+....+++|++|++...+-|        ++  ...|  +.+..+++|+|..|.|.. +..+.++..
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            444333555    235679999999999766511        22  2344  467899999999999998 444555443

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.27  E-value=2.6  Score=30.01  Aligned_cols=69  Identities=13%  Similarity=0.088  Sum_probs=43.3

Q ss_pred             EEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcE---EEEeCCcEEEeC---CCCcEE--EEeCCeEEEEEEE
Q 025000           66 YLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVS---SKLMVDSYTYLP---PNFAHS--LRAEGSATLVVFE  134 (259)
Q Consensus        66 ~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~---~~L~~Gd~i~~p---~~~~H~--~~N~~~a~~l~v~  134 (259)
                      ....+.||...-........+++|++|.+++.. .+|+.   ..+.+|+++=--   .+.++.  .+..+++.++.+.
T Consensus        40 ~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~fg~~~l~~~~~~~~s~~a~~~~~~~~i~  117 (136)
T d1cx4a1          40 FEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLD  117 (136)
T ss_dssp             EEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEECHHHHHHCCCCCSEEEESSCEEEEEEE
T ss_pred             EEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCccccchHHHhCCCcceEEEEECCCEEEEEEe
Confidence            355667776553334567899999999999876 23332   368999985211   144443  4446677777664

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.15  E-value=1.3  Score=31.26  Aligned_cols=68  Identities=12%  Similarity=-0.003  Sum_probs=42.2

Q ss_pred             EEEEEecCCcccCcceeeccceEEEEEEceEEEE-e--CCEE---EEccCCcEEE----eCCCCceeEEeCCCccEEEE
Q 025000          181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-L--GDSW---YPVQAGDVLW----MAPFVPQWYAALGKTRTRYL  249 (259)
Q Consensus       181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~-~--~g~~---~~v~~GD~i~----~~~~~~H~~~n~G~e~~~fi  249 (259)
                      +.+-++++|..+= ++.....+.|+|++|...+. .  +|+.   ..+++||++=    +..+.++.....-.++++.+
T Consensus        13 ~~~~~~~~g~~i~-~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~   90 (132)
T d1i5za2          13 CHIHKYPSKSTLI-HQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA   90 (132)
T ss_dssp             SEEEEECTTCEEE-CTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCEEEE
T ss_pred             CEEEEECcCCEEE-cCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEEEEccceEEE
Confidence            4566888998884 35556668899999999755 2  3443   4468999863    33344444433334454443