Citrus Sinensis ID: 025018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWLSRHEETSEENKSSNQLIAM
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEccEEEEEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEHHHHcccccEEEEEcccccccEEEEEccccEEEcccccHHHHHHHHHHHHHccccccccccccccccEEEEEccccEEccccEEEccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcEEHHHHHHcccccccccccHHHHHHHHcccccccccccHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccHHHcccccEEEEEHHHHEEHcccEEEcccEEEEEccccccccccccccHHHEcccccccccccccccccccccEEEcHHHHHHccccEEEEEEcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHcccccEEEEccccccEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHccccHEEcccHHHHHEEEHHHHHHHHHHHHccccccEEEEEHHHHHHHcccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mglltnrverneikagdhiyTYRAVFAyshhgiyvggskvvhfrpernlivgaetssetqnsilpssclifpdcgfrqpnsgvILSCLDcflgngslycfeygvapsvFLAKvrggtcttatsdppeTVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGllivdrqgvgssgqassvigAPLAAIlssplkllmpspvgmaTVTAGMYCMSRyatdigvrSDVIKVAVEDLAVNLgwlsrheetseenkssNQLIAM
Flexible Loop (DISEMBL)
mglltnrverneikagdhIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGaetssetqnsILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCttatsdppetVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLgwlsrheetseenkssnqliam
Low Complexity Region (SEG)
MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRqgvgssgqassvigaPLAAIlssplkllmpspVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWLSRHEETSEENKSSNQLIAM
Disordered region (IsUnstruct)
***********EIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAE*******SILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWLS******************
Disordered Region (DISOPRED)
*GLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAV************************
Disordered Region (DISEMBL)
MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQG********SVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWLSR*****************
Disordered Region (DISPRO)
*GLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPER*******TSSETQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWL*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWLSRHEETSEENKSSNQLIAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
255564619	258	conserved hypothetical protein [Ricinus	0.996	1.0	0.810	1e-120
225470960	262	PREDICTED: uncharacterized protein LOC10	0.992	0.980	0.810	1e-120
224130588	261	predicted protein [Populus trichocarpa]	0.996	0.988	0.784	1e-118
351727210	258	uncharacterized protein LOC100527481 [Gl	0.976	0.980	0.794	1e-116
358248818	259	uncharacterized protein LOC100797242 [Gl	0.915	0.915	0.838	1e-116
224068020	261	predicted protein [Populus trichocarpa]	0.996	0.988	0.757	1e-113
388503568	259	unknown [Medicago truncatula]	0.988	0.988	0.756	1e-110
449477956	286	PREDICTED: uncharacterized LOC101207141	0.930	0.842	0.814	1e-108
449432028	253	PREDICTED: uncharacterized protein LOC10	0.930	0.952	0.814	1e-108
297848400	255	hypothetical protein ARALYDRAFT_470154 [	0.891	0.905	0.773	1e-106

>gi|255564619|ref|XP_002523304.1| conserved hypothetical protein [Ricinus communis] gi|223537392|gb|EEF39020.1| conserved hypothetical protein [Ricinus communis]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/259 (81%), Positives = 231/259 (89%), Gaps = 1/259 (0%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MGLL+NRVER+EIK GDHIYTYRAVF YSHHGI+VGGSKVVHFRP +N    ++TS    
Sbjct: 1   MGLLSNRVERSEIKPGDHIYTYRAVFTYSHHGIFVGGSKVVHFRPRQNANSSSDTSDFYD 60

Query: 61  NSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTT 120
           +SI  SSC  FPDCGFRQPNSGV+LSCLDCFL NGSLY FEYGV PSVFLAKVRGGTCTT
Sbjct: 61  SSI-ASSCETFPDCGFRQPNSGVVLSCLDCFLRNGSLYSFEYGVPPSVFLAKVRGGTCTT 119

Query: 121 ATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVI 180
           A SDPPE VIHRAMYLLQNGFGNY++FQNNCEDFA+YC+TGLLI+D+ GVG SGQASSVI
Sbjct: 120 AASDPPEAVIHRAMYLLQNGFGNYDIFQNNCEDFAMYCKTGLLIMDKLGVGRSGQASSVI 179

Query: 181 GAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWL 240
           GAPLAA+LSSPLKLLMPSPVG+ATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGW 
Sbjct: 180 GAPLAALLSSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWS 239

Query: 241 SRHEETSEENKSSNQLIAM 259
             +EE  E+N++S +LIAM
Sbjct: 240 GSYEEVCEDNEASRRLIAM 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470960|ref|XP_002266683.1| PREDICTED: uncharacterized protein LOC100253490 [Vitis vinifera] gi|147767788|emb|CAN66977.1| hypothetical protein VITISV_022080 [Vitis vinifera]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/259 (81%), Positives = 230/259 (88%), Gaps = 2/259 (0%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MGLLTNRVER+EI+ GDHIYT+RAVF YSHHGI+VGGSKVVHF PERN      T S++ 
Sbjct: 1   MGLLTNRVERSEIRPGDHIYTWRAVFTYSHHGIFVGGSKVVHFTPERNRDSNNGTPSDSY 60

Query: 61  N--SILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
           +  S +PS+C  FPDCGFRQPNSGV+LSCLDCFLG GSLY FEYGV PSVFLAKVRGGTC
Sbjct: 61  DLVSSIPSTCSTFPDCGFRQPNSGVVLSCLDCFLGKGSLYSFEYGVTPSVFLAKVRGGTC 120

Query: 119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASS 178
           TTATSDPP+ VIHRAMYLLQNGFGNY+VFQNNCEDFALYC+TGLLIVD+ GVG SGQASS
Sbjct: 121 TTATSDPPDAVIHRAMYLLQNGFGNYDVFQNNCEDFALYCKTGLLIVDKSGVGRSGQASS 180

Query: 179 VIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG 238
           VIGAPLAAILSSPLKLLMPSPVG+ATVTAGMYCMSRYATDIGVR+DVIKVAVE+LAVNLG
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRTDVIKVAVEELAVNLG 240

Query: 239 WLSRHEETSEENKSSNQLI 257
           W    EE +EEN +SN+ I
Sbjct: 241 WGDVTEEVAEENDASNRQI 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130588|ref|XP_002320878.1| predicted protein [Populus trichocarpa] gi|222861651|gb|EEE99193.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/260 (78%), Positives = 229/260 (88%), Gaps = 2/260 (0%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MG L++RVER+EIK GDHIYTYRAVF YSHHG++VGGSKVVHF P +N    ++TSS+  
Sbjct: 1   MGFLSHRVERSEIKPGDHIYTYRAVFTYSHHGVFVGGSKVVHFTPRQNANSSSDTSSDFY 60

Query: 61  NSI--LPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
           +S+  +PSSC  FPDCGFRQP+SGV+LSCLDCFL  GSLY FEYGV P+VF+AKVRGGTC
Sbjct: 61  DSMSSIPSSCETFPDCGFRQPDSGVVLSCLDCFLKKGSLYSFEYGVPPTVFIAKVRGGTC 120

Query: 119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASS 178
           TTA SDPPETVIHRAMYLLQNGFGNY+VF NNCEDFA+YC+TGLLI+DR GVG SGQASS
Sbjct: 121 TTAASDPPETVIHRAMYLLQNGFGNYDVFHNNCEDFAMYCKTGLLIMDRLGVGRSGQASS 180

Query: 179 VIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG 238
           VIGAPLAAILSSPLKLLMPSPVG+ATVTAGMYCMSRYATDIGVRSDVIKVAVEDLA+NLG
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAMNLG 240

Query: 239 WLSRHEETSEENKSSNQLIA 258
           W    EE  E+N++S  LIA
Sbjct: 241 WAGPLEEVPEDNEASGALIA 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727210|ref|NP_001236641.1| uncharacterized protein LOC100527481 [Glycine max] gi|255632450|gb|ACU16575.1| unknown [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 226/258 (87%), Gaps = 5/258 (1%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MGLL+NRVER+EIK GDHIYTYRAVF YSHHGI+VGGSKVVHFRPERNL    ETSS   
Sbjct: 1   MGLLSNRVERHEIKPGDHIYTYRAVFTYSHHGIFVGGSKVVHFRPERNLKSMTETSSNWD 60

Query: 61  NSILPSS--CLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
           +   P+S  C  FPDCGFRQPN GV+LSCLD FL NGSLYCFEY V+PSVFL+++RGGTC
Sbjct: 61  D---PTSNPCPTFPDCGFRQPNCGVVLSCLDRFLRNGSLYCFEYEVSPSVFLSRIRGGTC 117

Query: 119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASS 178
           TTA++DPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYC+TGLLI D+QGVG SGQASS
Sbjct: 118 TTASADPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIQDKQGVGRSGQASS 177

Query: 179 VIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG 238
           VIGAPLAA+++SPLKLLMPSPVG+ATVTAGMYCMSRYATDIGVRSDVIKV VEDLAVNLG
Sbjct: 178 VIGAPLAAMITSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRSDVIKVPVEDLAVNLG 237

Query: 239 WLSRHEETSEENKSSNQL 256
           W  + EE +E   S  Q+
Sbjct: 238 WTCQGEEIAEHETSDRQI 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248818|ref|NP_001239945.1| uncharacterized protein LOC100797242 [Glycine max] gi|255638656|gb|ACU19633.1| unknown [Glycine max]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/242 (83%), Positives = 221/242 (91%), Gaps = 5/242 (2%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MGLL+NRVER+EIK GDHIYTYRAVF YSHHGI+VGGSKVVHFRPERNL    ETSS   
Sbjct: 1   MGLLSNRVERHEIKPGDHIYTYRAVFTYSHHGIFVGGSKVVHFRPERNLKSMTETSSNWD 60

Query: 61  NSILPSS--CLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
           +   P+S  C  FPDCGFRQPNSGV+LSCLDCFL NGSLYCFEY V+PSVFL+++RGGTC
Sbjct: 61  D---PTSNPCPTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYEVSPSVFLSRIRGGTC 117

Query: 119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASS 178
           TTA++DPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYC+TGLLI D+QGVG SGQASS
Sbjct: 118 TTASADPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIQDKQGVGRSGQASS 177

Query: 179 VIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG 238
           VIGAPLAA++SSPLKLLMPSPVG+ATVTAGMYCMSRYATDIGVRSDVIKV VEDLAVNLG
Sbjct: 178 VIGAPLAAMISSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRSDVIKVPVEDLAVNLG 237

Query: 239 WL 240
           W+
Sbjct: 238 WI 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068020|ref|XP_002302649.1| predicted protein [Populus trichocarpa] gi|222844375|gb|EEE81922.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/260 (75%), Positives = 225/260 (86%), Gaps = 2/260 (0%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MG L++RVER+EIK GDHIY+YRAVF YSHHGI+VGGSKVVHF P +     ++TSS+  
Sbjct: 1   MGFLSHRVERSEIKPGDHIYSYRAVFTYSHHGIFVGGSKVVHFTPRQIANSSSDTSSDFY 60

Query: 61  NSI--LPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
           NS+  +PSSC  FPDCGFRQ +SGV+LSCLDCFL  GSLYCFEYGV P+VFLAKVRGGTC
Sbjct: 61  NSMSSIPSSCETFPDCGFRQLDSGVVLSCLDCFLKKGSLYCFEYGVPPTVFLAKVRGGTC 120

Query: 119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASS 178
           TTA SDPPETVIHRAMYLLQNGFGNY+VFQNNCEDFA+YC+TGLL++DR GVG SGQAS+
Sbjct: 121 TTAASDPPETVIHRAMYLLQNGFGNYDVFQNNCEDFAMYCKTGLLVMDRLGVGRSGQAST 180

Query: 179 VIGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG 238
           VIGAPLAAILSSPL LL+PSPVG+ATVTAGM+CMSRYATDIGVRSDVIKVAVEDLA+ L 
Sbjct: 181 VIGAPLAAILSSPLNLLIPSPVGVATVTAGMFCMSRYATDIGVRSDVIKVAVEDLAMKLS 240

Query: 239 WLSRHEETSEENKSSNQLIA 258
           W    EE  E++ +S  +IA
Sbjct: 241 WAGPLEEVPEDDDASGAMIA 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503568|gb|AFK39850.1| unknown [Medicago truncatula]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/259 (75%), Positives = 224/259 (86%), Gaps = 3/259 (1%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MGL++NR+E+++IK GDH+YTYRAVF+YSHHGI+VGGSKVVHFRP+RN     ETSS   
Sbjct: 1   MGLISNRIEKHDIKPGDHVYTYRAVFSYSHHGIFVGGSKVVHFRPDRNFKSITETSSNVD 60

Query: 61  NSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTT 120
           +         FPDCGFRQPNSGV+LSCLDCFL NGSLYCFEYGV+P++FL ++RGGTCTT
Sbjct: 61  DPTPTPC-PTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYGVSPTLFLTRIRGGTCTT 119

Query: 121 ATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVI 180
           A  DPPETVIHRAMYLLQNGFGNY+VFQNNCEDFA+YC+TGLLIVD+QGVG SGQASSVI
Sbjct: 120 ALPDPPETVIHRAMYLLQNGFGNYDVFQNNCEDFAMYCKTGLLIVDKQGVGRSGQASSVI 179

Query: 181 GAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWL 240
           GAPLAA+LSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDV+KV VEDLAVNLGW 
Sbjct: 180 GAPLAAMLSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVVKVGVEDLAVNLGWT 239

Query: 241 --SRHEETSEENKSSNQLI 257
             S  EE   +  +++ +I
Sbjct: 240 TCSDEEEVVGDGTANSPII 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477956|ref|XP_004155174.1| PREDICTED: uncharacterized LOC101207141 [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/242 (81%), Positives = 215/242 (88%), Gaps = 1/242 (0%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSS-ET 59
           MGL++NRVER+EIK GDHIYTYRAVFAYSHHGI+VGGSKVVHFRP+RNL    +T     
Sbjct: 1   MGLISNRVERSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRNLNSSTDTPDFYD 60

Query: 60  QNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCT 119
            +S  PSSC IFPDCGFRQPNSGV+LSCLDCFL NGSLYCF+YGV PSVFL++VRGGTCT
Sbjct: 61  SSSSNPSSCPIFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFDYGVPPSVFLSRVRGGTCT 120

Query: 120 TATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSV 179
           TATSD  + VIHRAMYLLQNGFGNYNVF+NNCEDFALYC+TGLLIVDR GVG SGQASSV
Sbjct: 121 TATSDSFDMVIHRAMYLLQNGFGNYNVFENNCEDFALYCKTGLLIVDRLGVGGSGQASSV 180

Query: 180 IGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGW 239
           IGAPLAAILSSPLKLLMPSPVGMA +TAGMY MSRYATDIGVR+DVIKVAVEDL ++L  
Sbjct: 181 IGAPLAAILSSPLKLLMPSPVGMAVMTAGMYSMSRYATDIGVRTDVIKVAVEDLPLDLES 240

Query: 240 LS 241
            S
Sbjct: 241 FS 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432028|ref|XP_004133802.1| PREDICTED: uncharacterized protein LOC101207141 [Cucumis sativus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/242 (81%), Positives = 215/242 (88%), Gaps = 1/242 (0%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSS-ET 59
           MGL++NRVER+EIK GDHIYTYRAVFAYSHHGI+VGGSKVVHFRP+RNL    +T     
Sbjct: 1   MGLISNRVERSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRNLNSSTDTPDFYD 60

Query: 60  QNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCT 119
            +S  PSSC IFPDCGFRQPNSGV+LSCLDCFL NGSLYCF+YGV PSVFL++VRGGTCT
Sbjct: 61  SSSSNPSSCPIFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFDYGVPPSVFLSRVRGGTCT 120

Query: 120 TATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSV 179
           TATSD  + VIHRAMYLLQNGFGNYNVF+NNCEDFALYC+TGLLIVDR GVG SGQASSV
Sbjct: 121 TATSDSFDMVIHRAMYLLQNGFGNYNVFENNCEDFALYCKTGLLIVDRLGVGGSGQASSV 180

Query: 180 IGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGW 239
           IGAPLAAILSSPLKLLMPSPVGMA +TAGMY MSRYATDIGVR+DVIKVAVEDL ++L  
Sbjct: 181 IGAPLAAILSSPLKLLMPSPVGMAVMTAGMYSMSRYATDIGVRTDVIKVAVEDLPLDLES 240

Query: 240 LS 241
            S
Sbjct: 241 FS 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848400|ref|XP_002892081.1| hypothetical protein ARALYDRAFT_470154 [Arabidopsis lyrata subsp. lyrata] gi|297337923|gb|EFH68340.1| hypothetical protein ARALYDRAFT_470154 [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/238 (77%), Positives = 212/238 (89%), Gaps = 7/238 (2%)

Query: 1   MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
           MG+LTN++ER E+KAGDHIYTYRA+FAYSHHGI+VGGSKVVHFRPE N +        + 
Sbjct: 1   MGILTNKMEREELKAGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPM------ESSS 54

Query: 61  NSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTT 120
           +S     C IFPDCGFRQP+SGV+LSCLDCFL NGSLYCFEYGV+PSVFL KVRGGTCTT
Sbjct: 55  SSSSDDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCTT 114

Query: 121 ATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDR-QGVGSSGQASSV 179
           A SDP ++VIHRAMYLLQNGFGNY++F+NNCEDFALYC+TGLLI+D+  GVG SGQASS+
Sbjct: 115 AQSDPTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGGVGRSGQASSI 174

Query: 180 IGAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNL 237
           +GAPLAA+LSSP KLL+PSP+G+ATVTAGMYCMSRYATDIGVRSDVIKV+VEDLA+NL
Sbjct: 175 VGAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLALNL 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:505006091	260	AT1G01225 [Arabidopsis thalian	0.972	0.969	0.656	4.1e-88
TAIR|locus:504955372	263	AT4G00905 "AT4G00905" [Arabido	0.918	0.904	0.646	4.5e-82
TAIR|locus:2076964	252	AT3G02700 "AT3G02700" [Arabido	0.938	0.964	0.465	8.6e-56
TAIR|locus:2164260	259	AT5G06370 "AT5G06370" [Arabido	0.911	0.911	0.476	1.3e-54
TAIR|locus:2171387	283	AT5G16360 "AT5G16360" [Arabido	0.621	0.568	0.502	1.6e-49
TAIR|locus:2171347	242	AT5G16330 "AT5G16330" [Arabido	0.633	0.677	0.488	3.7e-44

TAIR|locus:505006091 AT1G01225 [Arabidopsis thaliana (taxid:3702)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 168/256 (65%), Positives = 198/256 (77%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
             MGLLTN++ER E+K GDHIYTYRA+FAYSHHGI+VGGSKVVHFRPE N +  + TSS + 
Sbjct:     1 MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPM-DSSTSSISS 59

Query:    61 NSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTT 120
             +S     C IFPDCGFRQP+SGV+LSCLDCFL NGSLYCFEYGV+PSVFL KVRGGTCTT
Sbjct:    60 SSS-EDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCTT 118

Query:   121 ATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXXXXXXXXXXX 180
             A SD  ++VIHRAMYLLQNGFGNY++F+NNCEDFALYC+TGLLI+D+             
Sbjct:   119 AQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQASSIV 178

Query:   181 XXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG-- 238
               PLAA+            +G+ATVTAGMYCMSRYATDIGVRSDVIKV+VEDLA+NL   
Sbjct:   179 GAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLALNLDVK 238

Query:   239 WLSRHEETSEENKSSN 254
              + + EE  E+ +  +
Sbjct:   239 TIEQGEEEEEDEEEDS 254

GO:0005634 "nucleus" evidence=ISM

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:504955372 AT4G00905 "AT4G00905" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 159/246 (64%), Positives = 189/246 (76%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVG--AETSSE 58
             MG+LTN+VER+E+K GDHIYTYRAVFAYSHHG++VGG KVVHF+PE +LI    A +SS 
Sbjct:     1 MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASSSSS 60

Query:    59 TQNSILP---SS---CLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAK 112
             + +S+     SS   C  +PDCG+++P SGV+LSCLDCFL  GSLY F+YGV+ S+FL +
Sbjct:    61 SSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120

Query:   113 VRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXXX 172
              RGGTCTTA SDP +TVIHRAM+LLQNGFGNYNVFQNNCEDFALYC+TGLLI+D+     
Sbjct:   121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNGVGR 180

Query:   173 XXXXXXXXXXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVED 232
                       PLAA+            VG+ATVTAGMYCMSRYATDIGVR+DVIKV VED
Sbjct:   181 SGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIKVPVED 240

Query:   233 LAVNLG 238
             LA+NLG
Sbjct:   241 LALNLG 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076964 AT3G02700 "AT3G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 122/262 (46%), Positives = 158/262 (60%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSET- 59
             MG L+N++ R+++K GDHIY++R  + Y+HHGIYVG  +V HF   R    G ET + T 
Sbjct:     1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFT--RG--DGQETGTGTF 56

Query:    60 -QNSILPSS-------CLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLA 111
               N I+ SS       C   PDCG R    GVI SCL+CFL  G LY FEY V+P++FLA
Sbjct:    57 LDNIIVSSSHNHGDNPC---PDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLA 113

Query:   112 KVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXX 171
             K RGG CT A+SDPPE VI+RA +LLQNGFG YNVF+NNCEDFA+YC+TGLL+ +     
Sbjct:   114 KPRGGVCTIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVANTDVGR 173

Query:   172 XXXXXXXXXXXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVE 231
                          A++             G+A    GMYC SR  +DIG+R DV KV VE
Sbjct:   174 SGQAASIVAA---ASVLLSSPLRFVAGFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVE 230

Query:   232 DLAVNLGWLSRHEETSEENKSS 253
              L  ++  +S  E   E+ K++
Sbjct:   231 RLVADVACMSDMEAKPEDEKTT 252

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164260 AT5G06370 "AT5G06370" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 114/239 (47%), Positives = 145/239 (60%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSET- 59
             MGLL+NR++R+ +K GDHIY++R  + Y+HHGIYVG  +V+HF   R   VG  T  +  
Sbjct:     1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFT-RRGQEVGTGTVLDLI 59

Query:    60 QNSILPS-SCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
               S  PS +    P C       GV+ SCL+CFL  G LY FEY V  + FL K RGGTC
Sbjct:    60 LVSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTC 119

Query:   119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXXXXXXXXX 178
             T A +DP E V+HRA +LLQNGFG Y+VF+NNCEDFA+YC+T LL+++            
Sbjct:   120 TLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVS 179

Query:   179 XXXXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNL 237
                 P+AA+             GMA    G+YC SRYATDIG+R+DV KV  EDL   L
Sbjct:   180 IIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTRRL 238

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2171387 AT5G16360 "AT5G16360" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 87/173 (50%), Positives = 117/173 (67%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
             MGL ++++ R+++K GDHIY++R  + YSHHG+YVG  KV+HF     L  G  T  +  
Sbjct:     1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60

Query:    61 NSI-LPS------SCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKV 113
               I +P+       C+   DCG +    GVI SCLDCFL  G+L+ FEY  +PS+FLAK 
Sbjct:    61 IDISIPNHGRRDKKCI---DCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK- 116

Query:   114 RGGTCTTATSDPPETVIHRAMYLL-QNGFGNYNVFQNNCEDFALYCRTGLLIV 165
             RGGTCT A+SDP + VI RA +LL QNGFG Y++  NNCEDFA+YC+TGL ++
Sbjct:   117 RGGTCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVL 169

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171347 AT5G16330 "AT5G16330" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 82/168 (48%), Positives = 114/168 (67%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETS-SET 59
             +G ++N++ R+++K GDHIY++R  + YSHHGIY+G  KV+HF     L  G  T   + 
Sbjct:     9 IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68

Query:    60 QNSILPSSCLIFP--DCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGT 117
               S++P+     P  +C  +    GVI SCLDCFL  G++Y FEY V+P+ F+AK R GT
Sbjct:    69 VVSVIPNHKGDNPCSNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPRRGT 128

Query:   118 CTTATSDPPETVIHRAMYLL-QNGFGNYNVFQNNCEDFALYCRTGLLI 164
             CT A SDP + VI RA YLL +NGFG+Y+  +NNCEDFA+YC+T LL+
Sbjct:   129 CTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLV 176

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam04970	125	pfam04970, LRAT, Lecithin retinol acyltransferase	4e-39

>gnl|CDD|203136 pfam04970, LRAT, Lecithin retinol acyltransferase

 Score =  132 bits (333), Expect = 4e-39
 Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 33/151 (21%)

Query: 13  IKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFP 72
            + GD I  +R    Y+HHGIYVG   VVH  P+    V    S                
Sbjct: 8   PRRGDLIEIFR--TLYTHHGIYVGDGYVVHLAPDSEKSVSNSRS---------------- 49

Query: 73  DCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHR 132
             G     +GV  SCL+ F G  +                            PP+ VI R
Sbjct: 50  ILGVLSNKAGVKKSCLEDFAGGDNYRVNNKLD--------------DKYQPLPPDEVIQR 95

Query: 133 AMYLLQNGFGNYNVFQNNCEDFALYCRTGLL 163
           A  L+      Y++  NNCE F  YCR GL 
Sbjct: 96  AEELVGQEV-PYSLLSNNCEHFVTYCRYGLS 125

The full-length members of this family are representatives of a novel class II tumour-suppressor family, designated as H-REV107-like. This domain is the catalytic N-terminal proline-rich region of the protein. The downstream region is a putative C-terminal transmembrane domain which is found to be crucial for cellular localisation, but not necessary for the enzyme activity. H-REV107-like proteins are homologous to lecithin retinol acyltransferase (LRAT), an enzyme that catalyzes the transfer of the sn-1 acyl group of phosphatidylcholine to all-trans-retinol and forming a retinyl ester. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PF04970	125	LRAT: Lecithin retinol acyltransferase; InterPro:	99.98
PRK11479	274	hypothetical protein; Provisional	98.46
TIGR02219	134	phage_NlpC_fam putative phage cell wall peptidase,	98.43
PRK10838	190	spr outer membrane lipoprotein; Provisional	98.34
PF08405	358	Calici_PP_N: Viral polyprotein N-terminal; InterPr	98.33
PF00877	105	NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The	97.96
PF05708	158	DUF830: Orthopoxvirus protein of unknown function	97.9
COG0791	197	Spr Cell wall-associated hydrolases (invasion-asso	97.9
PRK13914	481	invasion associated secreted endopeptidase; Provis	97.84
PRK10030	197	hypothetical protein; Provisional	97.55
PRK11470	200	hypothetical protein; Provisional	96.74
TIGR02594	129	conserved hypothetical protein TIGR02594. Members	96.53
PF05608	136	DUF778: Protein of unknown function (DUF778); Inte	96.14
PF05903	151	Peptidase_C97: PPPDE putative peptidase domain; In	95.91
PF05382	145	Amidase_5: Bacteriophage peptidoglycan hydrolase ;	92.8
KOG0324	214	consensus Uncharacterized conserved protein [Funct	92.44
COG3863	231	Uncharacterized distant relative of cell wall-asso	92.39
PF06672	216	DUF1175: Protein of unknown function (DUF1175); In	89.55

>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes

Probab=99.98  E-value=7.1e-33  Score=225.08  Aligned_cols=122  Identities=35%  Similarity=0.628  Sum_probs=80.8

Q ss_pred             CCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEccc
Q 025018            9 ERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCL   88 (259)
Q Consensus         9 ~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~L   88 (259)
                      +.++|+|||||+++|..  |+|||||+|+++|||+.++.+...++.                ...++.......|+.++|
T Consensus         3 ~~~~~~~GD~I~~~r~~--y~H~gIYvG~~~ViH~~~~~~~~~~~~----------------~~~~~~~~~~~~V~~~~l   64 (125)
T PF04970_consen    3 DKKRLKPGDHIEVPRGL--YEHWGIYVGDGEVIHFSGPGEISVSNR----------------SSICGFSKKKAEVKKDSL   64 (125)
T ss_dssp             ---S--TT-EEEEEETT--EEEEEEEEETTEEEEEE-S-SSS-SSS----------------SGGGGT--S-EEEEEEEH
T ss_pred             cccCCCCCCEEEEecCC--ccEEEEEecCCeEEEeccccccccccc----------------ccccceecCCCEEEEEEh
Confidence            35789999999999996  999999999999999997654211111                112333444567999999


Q ss_pred             hhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCcc
Q 025018           89 DCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLL  163 (259)
Q Consensus        89 ~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl~  163 (259)
                      ++|+.|..+++..|-          +    ...+++++++|++||+++|++++ +|||++|||||||+|||||..
T Consensus        65 ~~~~~~~~~~v~~~~----------~----~~~~~~~~~~iv~rA~~~lg~~~-~Y~l~~nNCEhFa~~c~tG~~  124 (125)
T PF04970_consen   65 EEFAQGRKVRVNNYL----------D----HRYKPFPPEEIVERAESRLGKEF-EYNLLFNNCEHFATWCRTGKS  124 (125)
T ss_dssp             HHHHTTSEEEE--GG----------G----GTS--S-HHHHHHHHHHTTT-EE-SS---HHHHHHHHHHHHHS--
T ss_pred             HHhcCCCEEEEEecC----------C----ccCCCCCHHHHHHHHHHHHcCCC-ccCCCcCCHHHHHHHHHcCCC
Confidence            999999987764331          1    34779999999999999996545 999999999999999999964

It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.

>PRK11479 hypothetical protein; Provisional

Probab=98.46  E-value=5.5e-07  Score=83.46  Aligned_cols=40  Identities=23%  Similarity=0.443  Sum_probs=33.7

Q ss_pred             CcccCCCCCCCCCEEEEeec-----------CcccceEEEEEcCCEEEEeC
Q 025018            5 TNRVERNEIKAGDHIYTYRA-----------VFAYSHHGIYVGGSKVVHFR   44 (259)
Q Consensus         5 ~~~v~~~~lk~GD~I~~~r~-----------~~~y~H~GIYvG~g~VIH~~   44 (259)
                      +++|+.+++||||+|++...           .-.++|.|||+|+++|||++
T Consensus        57 g~~Vs~~~LqpGDLVFfst~t~~S~~Ik~~T~s~~SHVgIylGdg~vIEA~  107 (274)
T PRK11479         57 IKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIYLGENNVAEAT  107 (274)
T ss_pred             CcccChhhCCCCCEEEEecCCccccceecccCCCCcEEEEEecCCeEEEcC
Confidence            56899999999999998532           12479999999999999984

>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family

Probab=98.43  E-value=3.8e-07  Score=75.57  Aligned_cols=41  Identities=17%  Similarity=0.120  Sum_probs=33.5

Q ss_pred             cccCCCCCCCCCEEEEeec-CcccceEEEEEcCCEEEEeCCC
Q 025018            6 NRVERNEIKAGDHIYTYRA-VFAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         6 ~~v~~~~lk~GD~I~~~r~-~~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      .+|+++++||||+|+|.-. +....|.|||+|++++||.+..
T Consensus        70 ~~v~~~~~qpGDlvff~~~~~~~~~HvGIy~G~g~~iHa~~~  111 (134)
T TIGR02219        70 VPVPCDAAQPGDVLVFRWRPGAAAKHAAIAASPTRFIHAYDG  111 (134)
T ss_pred             cccchhcCCCCCEEEEeeCCCCCCcEEEEEeCCCcEEEECCC
Confidence            4678899999999999632 2125899999999999999864

Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.

>PRK10838 spr outer membrane lipoprotein; Provisional

Probab=98.34  E-value=7.1e-07  Score=78.72  Aligned_cols=42  Identities=26%  Similarity=0.515  Sum_probs=35.3

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      .+.+|++++++|||+|+|.... ...|+|||+||+++||.+..
T Consensus       120 ~g~~V~~~~lqpGDLVfF~~~~-~~~HVGIyiGng~~IHAs~~  161 (190)
T PRK10838        120 MGKSVSRSKLRTGDLVLFRAGS-TGRHVGIYIGNNQFVHASTS  161 (190)
T ss_pred             cCcCcccCCCCCCcEEEECCCC-CCCEEEEEecCCEEEEeCCC
Confidence            4678999999999999986433 24799999999999999764

>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily

Probab=98.33  E-value=1.4e-06  Score=81.75  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=31.3

Q ss_pred             cCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018            8 VERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         8 v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      .+..++++|++|+++-+.  +.|+|||+|+|+++-..++
T Consensus         4 ~~a~EP~~GsilE~~eG~--~yHYaIYi~~G~~lgvh~p   40 (358)
T PF08405_consen    4 MPAREPLIGSILEMDEGD--IYHYAIYIGKGLVLGVHSP   40 (358)
T ss_pred             CCCCCCCCCceEEEecCe--eEEEEEEecCCeEEeecCc
Confidence            467899999999999987  7899999999999744443

; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms

>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins

Probab=97.96  E-value=6.5e-06  Score=64.36  Aligned_cols=37  Identities=38%  Similarity=0.561  Sum_probs=32.3

Q ss_pred             ccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeC
Q 025018            7 RVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFR   44 (259)
Q Consensus         7 ~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~   44 (259)
                      .++.++++|||+|++.. .....|.|||+|++++||..
T Consensus        46 ~~~~~~~~pGDlif~~~-~~~~~Hvgiy~g~~~~iha~   82 (105)
T PF00877_consen   46 RVPISELQPGDLIFFKG-GGGISHVGIYLGDGKFIHAS   82 (105)
T ss_dssp             HEEGGG-TTTEEEEEEG-TGGEEEEEEEEETTEEEEEE
T ss_pred             ccchhcCCcccEEEEeC-CccCCEeEEEEeCCeEEEeC
Confidence            48899999999999987 33479999999999999999

The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....

>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C

Probab=97.90  E-value=6.1e-05  Score=62.53  Aligned_cols=96  Identities=23%  Similarity=0.346  Sum_probs=57.5

Q ss_pred             CCCCCCEEEEeecC-----------cccceEEEEEcCC----EEEEeCCCCCccccccccccccccCCCCcccCCCCcCc
Q 025018           12 EIKAGDHIYTYRAV-----------FAYSHHGIYVGGS----KVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGF   76 (259)
Q Consensus        12 ~lk~GD~I~~~r~~-----------~~y~H~GIYvG~g----~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~   76 (259)
                      +||+||+|++....           ..|.|.|||++++    .|+|+....                             
T Consensus         1 ~l~~GDIil~~~~~~~s~~i~~~t~~~~~HvgI~~~~~~~~~~viea~~~~-----------------------------   51 (158)
T PF05708_consen    1 KLQTGDIILTRGKSSLSKAIRPVTSSPYSHVGIVIGDEGQEPYVIEATPGD-----------------------------   51 (158)
T ss_dssp             ---TT-EEEEEE-SCCHHHHHHHHTSS--EEEEEEEETTE-EEEEEEETTT-----------------------------
T ss_pred             CCCCeeEEEEECCchHHHHHHHHhCCCCCEEEEEEecCCCceEEEEeccCC-----------------------------
Confidence            58999999996532           2489999999987    689985422                             


Q ss_pred             cCCCCceEEccchhhcCC-CceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccc------cC
Q 025018           77 RQPNSGVILSCLDCFLGN-GSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVF------QN  149 (259)
Q Consensus        77 ~~~~~gVv~s~L~~Fl~G-~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~------~N  149 (259)
                           ||....|+.|+.. +.+.++.+...               ....-.+.+++.|.+++  |. .|++.      .-
T Consensus        52 -----Gv~~~~l~~~~~~~~~~~V~r~~~~---------------~~~~~~~~~~~~a~~~~--g~-~Y~~~~~~~~~~~  108 (158)
T PF05708_consen   52 -----GVRLEPLSDFLKRNEKIAVYRLKDP---------------LSEEQRQKAAEFAKSYI--GK-PYDFNFSLDDDRF  108 (158)
T ss_dssp             -----CEEEEECHHHHHCCCEEEEEEECCG---------------TTCHHHHHHHHHHHCCT--TS--B-CC-HCCSSSB
T ss_pred             -----CeEEeeHHHHhcCCceEEEEEECCC---------------CCHHHHHHHHHHHHHHc--CC-CccccccCCCCCE
Confidence                 5788899999884 44444322211               01223556777777777  43 77776      34


Q ss_pred             chhHHHHHhh
Q 025018          150 NCEDFALYCR  159 (259)
Q Consensus       150 NCEHFA~~Ck  159 (259)
                      .|=.|+..|-
T Consensus       109 yCSelV~~~y  118 (158)
T PF05708_consen  109 YCSELVAEAY  118 (158)
T ss_dssp             -HHHHHHHHH
T ss_pred             EcHHHHHHHH
Confidence            6888888885

>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]

Probab=97.90  E-value=1.5e-05  Score=68.90  Aligned_cols=42  Identities=21%  Similarity=0.468  Sum_probs=35.8

Q ss_pred             CcccCCCCCCCCCEEEEeec-CcccceEEEEEcCCEEEEeCCC
Q 025018            5 TNRVERNEIKAGDHIYTYRA-VFAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         5 ~~~v~~~~lk~GD~I~~~r~-~~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      +.+|+..+++|||+|+|... .....|.|||+|+|++||.+..
T Consensus       131 g~~v~~~~~~~GDlvff~~~~~~~~~Hvgiy~g~g~~iha~~~  173 (197)
T COG0791         131 GTAVDDSDLQPGDLVFFNTGGGSSANHVGIYLGNGQFIHAAGS  173 (197)
T ss_pred             cCccChhhCCCCCEEEEecCCCCCCCeEEEEecCCeEEecCCC
Confidence            67888999999999999862 3347899999999999999764

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=97.84  E-value=2e-05  Score=78.10  Aligned_cols=41  Identities=29%  Similarity=0.537  Sum_probs=34.1

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRP   45 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~   45 (259)
                      .+.+|+.++++|||+|||.... ...|+|||+|+|++||...
T Consensus       418 ~G~~Vs~selqpGDLVFF~~~~-~~~HVGIYiGnG~~IHA~~  458 (481)
T PRK13914        418 STTRISESQAKPGDLVFFDYGS-GISHVGIYVGNGQMINAQD  458 (481)
T ss_pred             cCcccccccCCCCCEEEeCCCC-CCCEEEEEeCCCEEEEcCC
Confidence            3678999999999999996433 2579999999999999753

>PRK10030 hypothetical protein; Provisional

Probab=97.55  E-value=0.00031  Score=62.09  Aligned_cols=85  Identities=19%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             CCCCCCCCCEEEEeecC-----------cccceEEEEEcC---CEEEEeCCCCCccccccccccccccCCCCcccCCCCc
Q 025018            9 ERNEIKAGDHIYTYRAV-----------FAYSHHGIYVGG---SKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDC   74 (259)
Q Consensus         9 ~~~~lk~GD~I~~~r~~-----------~~y~H~GIYvG~---g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~c   74 (259)
                      ...++++||+|++.-..           -.|+|.||+++.   -.|+|+.+                             
T Consensus        17 ~~~~l~~GDlif~~g~~~~s~aI~~~T~s~~SHVGIi~~~~~~~~ViEAv~-----------------------------   67 (197)
T PRK10030         17 FAWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMIVKRNKKPYVFEAVG-----------------------------   67 (197)
T ss_pred             hhcCCCCCCEEEEeCCCcHhHHHhHhhCCCCceEEEEEEECCcEEEEEecC-----------------------------
Confidence            44589999999985421           249999998873   25888742                             


Q ss_pred             CccCCCCceEEccchhhcCCC---ceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccc
Q 025018           75 GFRQPNSGVILSCLDCFLGNG---SLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVF  147 (259)
Q Consensus        75 g~~~~~~gVv~s~L~~Fl~G~---~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~  147 (259)
                             +|+.++|+.|++-.   .+.++++..  .             ..+...+.+++.|.+.+  |. .||+.
T Consensus        68 -------~V~~~pL~~Fl~~~~~~~~~V~Rl~~--~-------------lt~~~~~~li~~A~~~l--Gk-pYD~~  118 (197)
T PRK10030         68 -------PVKYTPLKQWIAHGEKGKYVVRRLEN--G-------------LSVEQQQKLAQTAKRYL--GK-PYDFY  118 (197)
T ss_pred             -------ceEEEEHHHHhhcCccCcEEEEEeCC--C-------------CCHHHHHHHHHHHHHHc--CC-CCCcc
Confidence                   37888999999643   222211110  0             01123456777888888  54 78865

>PRK11470 hypothetical protein; Provisional

Probab=96.74  E-value=0.0063  Score=54.35  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             CCCCCCCEEEEeec-----------CcccceEEEEEcC---C-EEEEeCCCCCccccccccccccccCCCCcccCCCCcC
Q 025018           11 NEIKAGDHIYTYRA-----------VFAYSHHGIYVGG---S-KVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCG   75 (259)
Q Consensus        11 ~~lk~GD~I~~~r~-----------~~~y~H~GIYvG~---g-~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg   75 (259)
                      .+++.||+|+..-.           +.-++|.||.++.   + .|+|...+                             
T Consensus         7 ~~l~~GDLvF~~~~~~~~~aI~~aT~s~~sHvGII~~~~~~~~~VlEA~~~-----------------------------   57 (200)
T PRK11470          7 AEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVP-----------------------------   57 (200)
T ss_pred             CCCCCCCEEEEeCCcchhHHHHhccCCccceEEEEEEEcCCceEEEEecCC-----------------------------
Confidence            58999999998631           1346899999843   2 66776431                             


Q ss_pred             ccCCCCceEEccchhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccc
Q 025018           76 FRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVF  147 (259)
Q Consensus        76 ~~~~~~gVv~s~L~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~  147 (259)
                            +|+.+.|+.|++-+.-        ..+.+++..    ....++-...+++.|+++|++   .||.-
T Consensus        58 ------~vr~TpLs~fi~r~~~--------g~i~v~Rl~----~~l~~~~~~~~~~~A~~~lGk---pYD~~  108 (200)
T PRK11470         58 ------LSTVTTLSRFIKRSAN--------QRYAIKRLD----AGLTEQQKQRIVEQVPSRLRK---LYHTG  108 (200)
T ss_pred             ------ceEEeEHHHHHhcCcC--------ceEEEEEec----CCCCHHHHHHHHHHHHHHcCC---CCCCc
Confidence                  3577899999975331        111222221    011222345588899999943   55553

>TIGR02594 conserved hypothetical protein TIGR02594

Probab=96.53  E-value=0.0034  Score=52.09  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             CcccCCCCCCCCCEEEEeecCcccceEEEEEcCC-E--EEEeCCCC
Q 025018            5 TNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGS-K--VVHFRPER   47 (259)
Q Consensus         5 ~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g-~--VIH~~~~~   47 (259)
                      +.+++  +++|||+|+|++..  ..|+|||+|++ .  .||.-++.
T Consensus        68 G~~v~--~p~~GDiv~f~~~~--~~HVGi~~g~~~~~g~i~~lgGN  109 (129)
T TIGR02594        68 GTKLS--KPAYGCIAVKRRGG--GGHVGFVVGKDKQTGTIIVLGGN  109 (129)
T ss_pred             CCcCC--CCCccEEEEEECCC--CCEEEEEEeEcCCCCEEEEeeCC
Confidence            44444  78999999998766  67999999964 2  57766643

Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.

>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function

Probab=96.14  E-value=0.033  Score=47.05  Aligned_cols=38  Identities=18%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCc
Q 025018          123 SDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGL  162 (259)
Q Consensus       123 ~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl  162 (259)
                      ...=|+.|++|...-  +.+.||||.+||.+|+..|..-.
T Consensus        76 ~~~wD~Av~~a~~~y--~~r~yNlf~~NCHSfVA~aLN~m  113 (136)
T PF05608_consen   76 AESWDDAVQKASEEY--KHRMYNLFTDNCHSFVANALNRM  113 (136)
T ss_pred             HHHHHHHHHHHHHHH--hhCceeeeccCcHHHHHHHHHhc
Confidence            345678899998877  34699999999999999998844

>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences

Probab=95.91  E-value=0.01  Score=50.30  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhhcCC--cccccccCchhHHHHHhhh
Q 025018          127 ETVIHRAMYLLQNGF--GNYNVFQNNCEDFALYCRT  160 (259)
Q Consensus       127 eeVV~RA~~~L~~G~--g~YnL~~NNCEHFA~~Ckt  160 (259)
                      ++-+++....|+..+  ..|||+.+||-||+...-.
T Consensus        84 ~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~  119 (151)
T PF05903_consen   84 EEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQ  119 (151)
T ss_dssp             HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHH
Confidence            344555556665433  5999999999999976644

The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.

>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3

Probab=92.80  E-value=0.17  Score=43.11  Aligned_cols=39  Identities=23%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             ccCCC---CCCCCCEEEEeecC---cccceEEEEEcCCEEEEeCC
Q 025018            7 RVERN---EIKAGDHIYTYRAV---FAYSHHGIYVGGSKVVHFRP   45 (259)
Q Consensus         7 ~v~~~---~lk~GD~I~~~r~~---~~y~H~GIYvG~g~VIH~~~   45 (259)
                      +|+..   ++|+||++...+.+   ..+-|.||+++..++||..-
T Consensus        67 ~I~~~~~~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y  111 (145)
T PF05382_consen   67 KISENVDWNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNY  111 (145)
T ss_pred             EeccCCcccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecC
Confidence            45544   89999999875532   24789999999999999985

5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].

>KOG0324 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=0.076  Score=47.93  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHhhcCC--cccccccCchhHHHHHh
Q 025018          125 PPETVIHRAMYLLQNGF--GNYNVFQNNCEDFALYC  158 (259)
Q Consensus       125 p~eeVV~RA~~~L~~G~--g~YnL~~NNCEHFA~~C  158 (259)
                      -+++.+++-+..|.+.+  ..|||+.+||-||+.-.
T Consensus        85 ~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~l  120 (214)
T KOG0324|consen   85 LTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNEL  120 (214)
T ss_pred             CCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHH
Confidence            45667888887776533  39999999999998654

>COG3863 Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]

Probab=92.39  E-value=0.26  Score=44.29  Aligned_cols=41  Identities=27%  Similarity=0.556  Sum_probs=30.9

Q ss_pred             cccCCCCCCCCCEEEEe---ecC------------cccceEEEEEcCCEEEEeCCC
Q 025018            6 NRVERNEIKAGDHIYTY---RAV------------FAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         6 ~~v~~~~lk~GD~I~~~---r~~------------~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      ++.++.-++|||.++..   |.+            ..|-|.|+|.|.++++...+.
T Consensus        72 ~~~dr~v~~~gd~~~gdyPTr~g~i~~t~~~~~~~~H~gHagmy~~a~~~VEs~ps  127 (231)
T COG3863          72 NNLDRSVLQPGDILLGDYPTRGGAIWLTDTFGNIVGHWGHAGMYIGAGQMVESWPS  127 (231)
T ss_pred             hhhhhhhcCCcchhhccCCCCcceEEEEcccccccccccceEEEEcCCcEEeeccC
Confidence            45678889999998872   111            136788999999999988775

>PF06672 DUF1175: Protein of unknown function (DUF1175); InterPro: IPR009558 This family consists of several hypothetical bacterial proteins of around 210 residues in length

Probab=89.55  E-value=0.78  Score=41.58  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             CCCCCCCCCEEEEeecCcc-cceEEEEEcC----CEEEEeCC
Q 025018            9 ERNEIKAGDHIYTYRAVFA-YSHHGIYVGG----SKVVHFRP   45 (259)
Q Consensus         9 ~~~~lk~GD~I~~~r~~~~-y~H~GIYvG~----g~VIH~~~   45 (259)
                      +.+..+|||+|++...... ..|.-||+|+    .-|-|-.+
T Consensus       132 dl~~A~pGDL~Ff~~~d~~~pfHlMI~~g~~~~~~ivYHTG~  173 (216)
T PF06672_consen  132 DLEQARPGDLLFFHQGDDQMPFHLMIWVGRDAPPWIVYHTGP  173 (216)
T ss_pred             hhhhcCCCcEEEecCCCCCcceEEEEEEcCCcceEEEEecCC
Confidence            3678999999988765421 3499999998    55555443

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
4dpz_X	137	HRAS-like suppressor 2; alpha/beta fold, enzyme ph	5e-28
4dot_A	140	Group XVI phospholipase A2; alpha/beta fold, phosp	1e-25

>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 2kyt_A Length = 137

 Score =  103 bits (257), Expect = 5e-28
 Identities = 37/168 (22%), Positives = 52/168 (30%), Gaps = 41/168 (24%)

Query: 9   ERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSC 68
            R   + GD I   R  F Y+H  IYVG   VVH  P   +      S  +  +      
Sbjct: 4   ARPRPRLGDLIEISR--FGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALT------ 55

Query: 69  LIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPET 128
                      N  ++   L   +  G  Y              V        T  P   
Sbjct: 56  -----------NKAIVKKELLSVVAGGDNYR-------------VNNKHDDRYTPLPSNK 91

Query: 129 VIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQA 176
           ++ RA  L+      Y++  +NCE F  + R         GV  S Q 
Sbjct: 92  IVKRAEELV-GQELPYSLTSDNCEHFVNHLRY--------GVSRSDQL 130

>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} Length = 140

 Score = 97.1 bits (241), Expect = 1e-25
 Identities = 36/173 (20%), Positives = 50/173 (28%), Gaps = 41/173 (23%)

Query: 7   RVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPS 66
           R    E K GD I  +R    Y H  IYVG   VVH  P   +      S  +  +    
Sbjct: 2   RAPIPEPKPGDLIEIFRPF--YRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALT---- 55

Query: 67  SCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPP 126
                        +  ++   L   +     Y             +V        +  P 
Sbjct: 56  -------------DKAIVKKELLYDVAGSDKY-------------QVNNKHDDKYSPLPC 89

Query: 127 ETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSV 179
             +I RA  L+      Y +   NCE F    R         GV  S Q   +
Sbjct: 90  SKIIQRAEELV-GQEVLYKLTSENCEHFVNELRY--------GVARSDQVRDL 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
2lkt_A	125	Retinoic acid receptor responder protein 3; TIG3,	100.0
4dot_A	140	Group XVI phospholipase A2; alpha/beta fold, phosp	99.98
4dpz_X	137	HRAS-like suppressor 2; alpha/beta fold, enzyme ph	99.97
2k1g_A	135	Lipoprotein SPR; solution structure, bacterial lip	98.67
2jyx_A	136	Lipoprotein SPR; solution structure, construct opt	98.49
2if6_A	186	Hypothetical protein YIIX; structural genomics, me	98.41
3pbi_A	214	Invasion protein; peptidoglycan hydrolase, extrace	98.35
3gt2_A	142	Putative uncharacterized protein; P60 domain, anti	98.31
3ne0_A	214	Resuscitation promoting factor interacting protei;	98.31
3kw0_A	214	Cysteine peptidase; structural genomics, joint cen	98.21
2hbw_A	235	NLP/P60 protein; NLP/P60 family protein, structura	98.1
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	98.09
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	98.01
4hpe_A	308	Putative cell WALL hydrolase TN916-like,CTN1-ORF1;	97.88
4fdy_A	313	Similar to lipoprotein, NLP/P60 family; SLT/lysozy	97.83
2wp7_A	168	PPPDE peptidase domain-containing protein 2; hydro	95.42
3m1u_A	434	Putative gamma-D-glutamyl-L-diamino acid endopept;	94.32
2p1g_A	249	Putative xylanase; structural genomics, unknown fu	90.63

>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}

Probab=100.00  E-value=6e-36  Score=242.47  Aligned_cols=122  Identities=24%  Similarity=0.360  Sum_probs=94.5

Q ss_pred             cCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEcc
Q 025018            8 VERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSC   87 (259)
Q Consensus         8 v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~   87 (259)
                      .+.+++||||||+++|.+  |+|||||+|+|+|||+.+..+....+..+..                ........|+.++
T Consensus         3 ~~~~ep~pGDlI~~~r~~--Y~H~gIYvGdg~ViH~~~~~~~~~~~~~~~~----------------~~~~~~~~V~~~~   64 (125)
T 2lkt_A            3 SPHQEPKPGDLIEIFRLG--YEHWALYIGDGYVIHLAPPSEYPGAGSSSVF----------------SVLSNSAEVKRER   64 (125)
T ss_dssp             SSSCCCCTTCEEEEECSS--SCEEEEEEETTEEEEEECSBCCSCCCBTTBS----------------SCCBCCEEEEEEE
T ss_pred             CCCCCCCCCCEEEEeCCC--ccEEEEEeCCCeEEEEcccccccccccccee----------------ccccCCceEEEEE
Confidence            367889999999999988  8999999999999999987653221111111                1112234688899


Q ss_pred             chhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCc
Q 025018           88 LDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGL  162 (259)
Q Consensus        88 L~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl  162 (259)
                      |++|+.|+.+++     ++..         +...+|+|+++||+||+++|++++ +||||+|||||||+|||||.
T Consensus        65 l~~~~~g~~~~v-----~~~~---------d~~~~p~~~~~iv~rA~~~lg~~~-~Y~l~~nNCEHFa~~cryG~  124 (125)
T 2lkt_A           65 LEDVVGGCCYRV-----NNSL---------DHEYQPRPVEVIISSAKEMVGQKM-KYSIVSRNCEHFVTQLRYGK  124 (125)
T ss_dssp             HHHHHTTCEEEE-----CCHH---------HHHTCCCCHHHHHHHHHHHTTCEE-CSSCHHHHHHHHHHHHHCSC
T ss_pred             HHHhcCCCeEEE-----EEcc---------CCCcCCCCHHHHHHHHHHHcCCCC-CcCCCccCHHHHHhhhhccC
Confidence            999999986554     4331         256789999999999999996543 89999999999999999984

>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}

Probab=99.98  E-value=9e-33  Score=230.39  Aligned_cols=131  Identities=29%  Similarity=0.349  Sum_probs=88.3

Q ss_pred             cCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEcc
Q 025018            8 VERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSC   87 (259)
Q Consensus         8 v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~   87 (259)
                      ..+.+++|||+|+|++..  |+|||||+|+|+|||++++.+. .+.++.  ++.+             .......|..+.
T Consensus         3 ~~~~~~~pGDlv~~~~~~--~~H~gIYvG~g~viH~~~~~~~-~~~~~~--~~~s-------------~~~~~a~V~~~~   64 (140)
T 4dot_A            3 APIPEPKPGDLIEIFRPF--YRHWAIYVGDGYVVHLAPPSEV-AGAGAA--SVMS-------------ALTDKAIVKKEL   64 (140)
T ss_dssp             ---CCCCTTCEEEEEETT--EEEEEEEEETTEEEEEECC----------------------------------CEEEEEE
T ss_pred             ccccCCCCCCEEEEeCCC--CCEEEEEeCCCeEEecCCCccc-cccccc--ccee-------------cccCCceEEEEE
Confidence            357899999999999976  8999999999999999987642 111110  0011             011234688899


Q ss_pred             chhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCcccccc
Q 025018           88 LDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDR  167 (259)
Q Consensus        88 L~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl~~~~~  167 (259)
                      |++|+.|...+     |+|.+     |    ..++|+|+++||+||+++|++ +.+|+|++|||||||+|||||      
T Consensus        65 L~d~~~g~~~~-----Vnn~~-----D----~~y~p~~~~~iv~rA~~~lG~-e~~Y~ll~nNCEHFvt~cr~G------  123 (140)
T 4dot_A           65 LYDVAGSDKYQ-----VNNKH-----D----DKYSPLPCSKIIQRAEELVGQ-EVLYKLTSENCEHFVNELRYG------  123 (140)
T ss_dssp             HHHHHTTSEEE-----ECCGG-----G----GTSCCCCHHHHHHHHHHTTTC-BCSSCCCHHHHHHHHHHHHHC------
T ss_pred             HHHhcCCCeEE-----EEecc-----C----CCcCCCCHHHHHHHHHHHcCC-cccccccccChHHHHHHHhcC------
Confidence            99999997533     56543     2    346899999999999999943 369999999999999999997      


Q ss_pred             CCcccchhhhHH
Q 025018          168 QGVGSSGQASSV  179 (259)
Q Consensus       168 ~g~grSgQa~s~  179 (259)
                        +.+|.|+.++
T Consensus       124 --~~~S~Qv~~~  133 (140)
T 4dot_A          124 --VARSDQVRDL  133 (140)
T ss_dssp             --CC--------
T ss_pred             --Ccccchhhhh
Confidence              4789998864

>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A

Probab=99.97  E-value=9.7e-32  Score=223.43  Aligned_cols=128  Identities=28%  Similarity=0.355  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEccc
Q 025018            9 ERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCL   88 (259)
Q Consensus         9 ~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~L   88 (259)
                      .+.+++|||+|+|++..  |+|||||+|+|+|||++++.+. .+.++.  ++.|             .......|+.+.|
T Consensus         4 ~~~~~~pGDlv~~~~~~--~~H~gIYvG~g~viH~~~~~~~-~~~~~~--~~~s-------------~~~~~a~V~~~~L   65 (137)
T 4dpz_X            4 ARPRPRLGDLIEISRFG--YAHWAIYVGDGYVVHLAPASEI-AGAGAA--SVLS-------------ALTNKAIVKKELL   65 (137)
T ss_dssp             CCCCCCTTCEEEEECSS--SEEEEEEEETTEEEEEEECC----------------------------TTCCCEEEEEEEH
T ss_pred             ccccCCCCCEEEEeCCC--CCEEEEEeCCCeEEeccCcccc-cccccc--ccee-------------cccCCceEEEEEH
Confidence            36899999999999876  8999999999999999987642 111110  0011             0112345788999


Q ss_pred             hhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCccccccC
Q 025018           89 DCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQ  168 (259)
Q Consensus        89 ~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl~~~~~~  168 (259)
                      ++|+.|+...     |+|..     |    ..++|+|+++|++||+++|++ +.+|+|++|||||||+|||||.      
T Consensus        66 ~df~~g~~~~-----VnN~~-----D----~~~~p~~~~~iv~rA~~~lG~-~~~Y~ll~nNCEHFvt~cryG~------  124 (137)
T 4dpz_X           66 SVVAGGDNYR-----VNNKH-----D----DRYTPLPSNKIVKRAEELVGQ-ELPYSLTSDNCEHFVNHLRYGV------  124 (137)
T ss_dssp             HHHHTTSCEE-----ECCTT-----T----TTSCCCCHHHHHHHHHHHTTC-EEC-----CHHHHHHHHHHHSC------
T ss_pred             HHhcCCCeEE-----EEecC-----C----CccCCCCHHHHHHHHHHHcCC-CcccCcCccChHHHHHHHhcCC------
Confidence            9999987533     55543     2    346899999999999999943 2699999999999999999975      


Q ss_pred             Ccccchhhh
Q 025018          169 GVGSSGQAS  177 (259)
Q Consensus       169 g~grSgQa~  177 (259)
                        .+|.|.+
T Consensus       125 --~~S~~~~  131 (137)
T 4dpz_X          125 --SRSDQLE  131 (137)
T ss_dssp             --CCC----
T ss_pred             --chhcchh
Confidence              6777765

>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}

Probab=98.67  E-value=1.9e-08  Score=82.86  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=36.1

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      .+++|+++++||||+|+|.... ...|+|||+|+|++||++..
T Consensus        59 ~g~~V~~~~l~pGDLvFf~~~~-~~~HVGIyiG~g~~IHA~~~  100 (135)
T 2k1g_A           59 MGKSVSRSNLRTGDLVLFRAGS-TGRHVGIYIGNNQFVHASTS  100 (135)
T ss_dssp             GSEEECGGGCCTTEEEEEEETT-TEEEEEEEEETTEEEEEETT
T ss_pred             CCcEecHHHccCCcEEEECCCC-CCeEEEEEecCCEEEEECCC
Confidence            4678999999999999987644 36799999999999999764

>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21

Probab=98.41  E-value=9.2e-07  Score=75.06  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             CCCCCCCCCEEEEeecC-----------cccceEEEEEc-CCE--EEEeCC
Q 025018            9 ERNEIKAGDHIYTYRAV-----------FAYSHHGIYVG-GSK--VVHFRP   45 (259)
Q Consensus         9 ~~~~lk~GD~I~~~r~~-----------~~y~H~GIYvG-~g~--VIH~~~   45 (259)
                      +..+|+|||+|++....           ..|+|.|||+| +|+  |||+.+
T Consensus         1 ~~~~l~~GDlvf~~~~~~~s~~I~~~t~~~~sHvgI~~~~~~~~~viea~~   51 (186)
T 2if6_A            1 SLWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVG   51 (186)
T ss_dssp             --CCCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEESS
T ss_pred             CcccCCCCCEEEEEcCCchHHHHHHHcCCCCceEEEEEEeCCcEEEEEeCC
Confidence            35789999999986432           14899999999 556  999973

>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A

Probab=98.35  E-value=4.3e-07  Score=80.07  Aligned_cols=42  Identities=21%  Similarity=0.274  Sum_probs=35.9

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPER   47 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~   47 (259)
                      .+++|+.++++|||+|+|....  ..|+|||+|+|++||.....
T Consensus       150 ~g~~V~~~~lqpGDLVff~~g~--~~HVgIYlG~g~~IHA~~~~  191 (214)
T 3pbi_A          150 AGRHVPPAEAKRGDLIFYGPGG--GQHVTLYLGNGQMLEASGSA  191 (214)
T ss_dssp             SSEEECGGGCCTTCEEEESGGG--CSEEEEEEETTEEEEEETTT
T ss_pred             cCeeechhhCCCCCEEEecCCC--CCEEEEEecCCEEEEECCCC
Confidence            4678999999999999985443  58999999999999998754

>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}

Probab=98.31  E-value=3.4e-07  Score=75.21  Aligned_cols=38  Identities=13%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEe
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHF   43 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~   43 (259)
                      .+.+|+.++++|||+|+|...+  ..|+|||+|+|++||.
T Consensus        81 ~g~~v~~~~~~pGDlvff~~~~--~~HVgIy~G~g~~iha  118 (142)
T 3gt2_A           81 VGQKILPQQARKGDLIFYGPEG--TQSVAMYLGNNQMLEV  118 (142)
T ss_dssp             SSEEECGGGCCTTCEEEESGGG--CSEEEEEEETTEEEEE
T ss_pred             hCceechhhCCCCCEEEeCCCC--CCEEEEEecCCEEEeC
Confidence            4678999999999999886544  6899999999999994

>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*

Probab=98.31  E-value=4.2e-07  Score=80.16  Aligned_cols=42  Identities=19%  Similarity=0.352  Sum_probs=35.4

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPER   47 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~   47 (259)
                      .+.+|+.++++|||+|+|....  ..|+|||+|+|++||.+...
T Consensus       150 ~g~~V~~~~lqpGDLvFf~~g~--~~HVgIYlG~g~~IHA~~~g  191 (214)
T 3ne0_A          150 LGRKIPSSQMRRGDVIFYGPNG--SQHVTIYLGNGQMLEAPDVG  191 (214)
T ss_dssp             SSEEEEGGGCCTTCEEEESGGG--CSEEEEEEETTEEEECCSTT
T ss_pred             cCceechhhCCCCCEEEecCCC--CCEEEEEeCCCEEEEeCCCC
Confidence            3578999999999999885433  58999999999999997643

>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}

Probab=98.21  E-value=4.8e-06  Score=72.92  Aligned_cols=51  Identities=25%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             CCCCCCCCEEEEeecC-----------cccceEEEEEcCCE---EEEeCCCCCccccccccccccccCCCCcccCCCCcC
Q 025018           10 RNEIKAGDHIYTYRAV-----------FAYSHHGIYVGGSK---VVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCG   75 (259)
Q Consensus        10 ~~~lk~GD~I~~~r~~-----------~~y~H~GIYvG~g~---VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg   75 (259)
                      +.+|++||+|++....           ..|+|.|||+|++.   |||+....                            
T Consensus        37 ~~~l~~GDlif~~~~~~~s~~I~~~T~s~~sHvgI~~~~~~~~~vieA~~~~----------------------------   88 (214)
T 3kw0_A           37 INVLKTGDIFLCSGNYLVSKLIKKVSESMFSHTGIIVKWGEHTLIMESVEDD----------------------------   88 (214)
T ss_dssp             TTTCCTTCEEEEEECSHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTT----------------------------
T ss_pred             HhhCCCCCEEEEeCCCcHHHHHHHhcCCCCcEEEEEEecCCceEEEEecCCC----------------------------
Confidence            4789999999996432           25899999999886   99996532                            


Q ss_pred             ccCCCCceEEccchhhcCC
Q 025018           76 FRQPNSGVILSCLDCFLGN   94 (259)
Q Consensus        76 ~~~~~~gVv~s~L~~Fl~G   94 (259)
                            ||+.+.|+.|+..
T Consensus        89 ------GV~~~~L~~fl~~  101 (214)
T 3kw0_A           89 ------GVRIVPLEHYIKN  101 (214)
T ss_dssp             ------EEEEEETHHHHHC
T ss_pred             ------CEEEecHHHHHHH
Confidence                  6888999999954

>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A

Probab=98.10  E-value=2.2e-06  Score=76.30  Aligned_cols=42  Identities=24%  Similarity=0.472  Sum_probs=36.2

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE   46 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~   46 (259)
                      .+++|+.++++|||+|+|.... ...|+|||+|+|++||.+..
T Consensus       152 ~g~~v~~~~l~pGDLvff~~~~-~~~HVgIy~G~g~~IHa~~~  193 (235)
T 2hbw_A          152 FTQAITIDELAPGDLVFFGTPV-KATHVGLYLGDGCYIHSSGK  193 (235)
T ss_dssp             HSEEECGGGCCTTCEEEEECSS-CEEEEEEEEETTEEEEEECT
T ss_pred             hCccccHhhCCCCCEEEECCCC-CCCEEEEEeCCCEEEEECCC
Confidence            3578899999999999987544 47899999999999999875

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=98.09  E-value=2.7e-06  Score=77.92  Aligned_cols=44  Identities=18%  Similarity=0.355  Sum_probs=35.8

Q ss_pred             CCcccCCCCCCCCCEEEEeec--CcccceEEEEEcCCEEEEeCCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRA--VFAYSHHGIYVGGSKVVHFRPER   47 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~--~~~y~H~GIYvG~g~VIH~~~~~   47 (259)
                      .+.+|+.++++|||+|+|...  .....|.|||+|+|++||.+...
T Consensus       241 ~g~~v~~~~~~pGDlvff~~~~~~~~~~HVgiy~G~g~~iha~~~~  286 (311)
T 3h41_A          241 NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAE  286 (311)
T ss_dssp             SSEEECGGGCCTTCEEEEEHHHHTSCEEEEEEEEETTEEEECCCTT
T ss_pred             CCEEEcHHHCCCCCEEEEecCCCCCCCcEEEEEEeCCEEEEECCCC
Confidence            467899999999999999742  11367999999999999997643

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=98.01  E-value=5.6e-06  Score=75.14  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=33.7

Q ss_pred             CCcccCC----CCCCCCCEEEEeec-----CcccceEEEEEcCCEEEEeCC
Q 025018            4 LTNRVER----NEIKAGDHIYTYRA-----VFAYSHHGIYVGGSKVVHFRP   45 (259)
Q Consensus         4 ~~~~v~~----~~lk~GD~I~~~r~-----~~~y~H~GIYvG~g~VIH~~~   45 (259)
                      .+.+|+.    ++++|||+|+|...     .....|.|||+|+|++||++.
T Consensus       208 ~g~~v~~~~~~~~~~pGDLvff~~~~~~~~~~~~~Hvgiy~g~~~~iha~~  258 (306)
T 3npf_A          208 VGEHIDIAPDFSNVKRGDLVFFGRKATAERKEGISHVGIYLGNKQFIHALG  258 (306)
T ss_dssp             SSEEECCCTTCTTCCTTCEEEEEECCCSSSCCEEEEEEEEEETTEEEEESS
T ss_pred             CCcEecccCccccCCCccEEEECCCCccCCCCCCeEEEEEECCCEEEEcCC
Confidence            3555654    89999999999762     234679999999999999975

>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}

Probab=97.88  E-value=8e-06  Score=75.11  Aligned_cols=40  Identities=30%  Similarity=0.453  Sum_probs=33.6

Q ss_pred             CCcccCCCCCCCCCEEEEeec---CcccceEEEEEcCCEEEEe
Q 025018            4 LTNRVERNEIKAGDHIYTYRA---VFAYSHHGIYVGGSKVVHF   43 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~---~~~y~H~GIYvG~g~VIH~   43 (259)
                      .+.+|+.++++|||+|+|...   +....|+|||+|+|++||.
T Consensus       240 ~g~~v~~~~l~pGDLvff~~~~~~~~~~~HVgIy~G~g~~iha  282 (308)
T 4hpe_A          240 ATQHLPLSQAKAGDLVFFHSTYNAGSYVTHVGIYVGNNQMYHA  282 (308)
T ss_dssp             TSEEECGGGCCTTCEEEEECSSSCSSSEEEEEEECSTTEEEEC
T ss_pred             cCeeechhhCCCCCEEEEcCCCCCCCCccEEEEEEcCCEEEEe
Confidence            357899999999999999642   2236799999999999999

>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}

Probab=97.83  E-value=1.3e-05  Score=74.24  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=32.8

Q ss_pred             CcccCCCCCCCCCEEEEeec---CcccceEEEEEcCCEEEEe
Q 025018            5 TNRVERNEIKAGDHIYTYRA---VFAYSHHGIYVGGSKVVHF   43 (259)
Q Consensus         5 ~~~v~~~~lk~GD~I~~~r~---~~~y~H~GIYvG~g~VIH~   43 (259)
                      +.+|+.++++|||+|+|...   +....|+|||+|+|++||.
T Consensus       245 g~~V~~~~lqpGDLvff~~~~~~g~~~~HVGIYlG~g~~IHA  286 (313)
T 4fdy_A          245 TQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHA  286 (313)
T ss_dssp             SEEECTTTCCTTCEEEESSSSCCSSSCCEEEEEEETTEEEES
T ss_pred             CceechhhCCCCCEEEEecCCCCCCCCcEEEEEecCCEEEEe
Confidence            56789999999999998632   2236899999999999999

>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A

Probab=95.42  E-value=0.01  Score=50.49  Aligned_cols=58  Identities=28%  Similarity=0.432  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHhhcC-C--cccccccCchhHHHHHhhhCccccccCCcccchhhhHHhhhhHHHHhhccc
Q 025018          125 PPETVIHRAMYLLQNG-F--GNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPL  192 (259)
Q Consensus       125 p~eeVV~RA~~~L~~G-~--g~YnL~~NNCEHFA~~CktGl~~~~~~g~grSgQa~s~l~~~l~a~~s~pl  192 (259)
                      +.++ +++....|... +  ..|||+.+||-||+...-.=+.       +  ..+.+++...-..+++||+
T Consensus        80 ~~~~-~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~-------g--k~IP~wInrl~~~vl~tp~  140 (168)
T 2wp7_A           80 TEEI-FLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT-------G--RKIPSYITDLPSEVLSTPF  140 (168)
T ss_dssp             CHHH-HHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHH-------S--CCCCHHHHTHHHHHHTSHH
T ss_pred             CHHH-HHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhc-------C--CCCcHHHHHHHHHHhcCcH
Confidence            4444 44555555443 4  4999999999999987644221       1  1355555554345667765

>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}

Probab=94.32  E-value=0.0038  Score=59.98  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             CCcccCCCCCCCCC--------EEEEeecCcccceEEEEEcCC----EEEEeCC
Q 025018            4 LTNRVERNEIKAGD--------HIYTYRAVFAYSHHGIYVGGS----KVVHFRP   45 (259)
Q Consensus         4 ~~~~v~~~~lk~GD--------~I~~~r~~~~y~H~GIYvG~g----~VIH~~~   45 (259)
                      .|.+|+.++++|||        +|+|....+...|+|||+|++    .+||...
T Consensus       328 ~g~~v~~~~l~pGD~~~~i~~~lvfF~~~~~~~gHVgIYiG~~~g~~~~ih~~~  381 (434)
T 3m1u_A          328 AGRYVDIAKLDADDKEARIVAEGVPFMTLLWLRGHITLYLGLHEGQAAMFHNMW  381 (434)
T ss_dssp             TSEEEECTTSCHHHHHHHHHHHCCTTSEEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred             cCeecCHHHCCCCcccccccccccccccCCCCCCeEEEEecCCCCcEEEEEeCC
Confidence            46789999999999        666543333346999999975    6788764

>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}

Probab=90.63  E-value=0.46  Score=42.61  Aligned_cols=37  Identities=27%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             CCCCCCCEEEEeec--CcccceEEEEEc---CCEEEEeCCCC
Q 025018           11 NEIKAGDHIYTYRA--VFAYSHHGIYVG---GSKVVHFRPER   47 (259)
Q Consensus        11 ~~lk~GD~I~~~r~--~~~y~H~GIYvG---~g~VIH~~~~~   47 (259)
                      .+++.||+|.+...  +-..+|.||++-   .-.++|+++..
T Consensus       170 ~~l~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~f~hASs~~  211 (249)
T 2p1g_A          170 PWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKE  211 (249)
T ss_dssp             TTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTT
T ss_pred             hcCCCCCEEEEEeCCCCCceeEEEEEEEECCeEEEEEcCCCC
Confidence            77999999999874  334799999994   33778888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2evra2	148	Cell wall-associated hydrolase Spr C-terminal doma	98.37
d2if6a1	182	Hypothetical protein YiiX {Escherichia coli [TaxId	97.36

>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: NlpC/P60
domain: Cell wall-associated hydrolase Spr C-terminal domain
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.37  E-value=1.2e-07  Score=77.10  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=36.6

Q ss_pred             CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCC
Q 025018            4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPER   47 (259)
Q Consensus         4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~   47 (259)
                      .+++|+.++++|||+|+|.... ...|+|||+|+|++||++...
T Consensus        65 ~g~~V~~~~l~pGDLvFf~~~~-~~~HVgIyiG~g~~iha~~~~  107 (148)
T d2evra2          65 FTQPITIAELVAGDLVFFGTSQ-KATHVGLYLADGYYIHSSGKD  107 (148)
T ss_dssp             HSEEECGGGCCTTCEEEEECSS-CEEEEEEECSTTEEEEEECTT
T ss_pred             hcCcccccccCcceeEEecCCC-CCCEeEEEecCCEEEEeCCCC
Confidence            4678999999999999986543 357999999999999998754

>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: YiiX-like
domain: Hypothetical protein YiiX
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00021  Score=57.78  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             CCCCCCEEEEeecC-----------cccceEEEEEcC-CEEE
Q 025018           12 EIKAGDHIYTYRAV-----------FAYSHHGIYVGG-SKVV   41 (259)
Q Consensus        12 ~lk~GD~I~~~r~~-----------~~y~H~GIYvG~-g~VI   41 (259)
                      ++|+||+|++...+           -.|+|.||+++. +.++
T Consensus         2 q~q~GDIlf~~~~s~~s~aI~~~T~s~~sHvgIv~~~~~~~~   43 (182)
T d2if6a1           2 QPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPY   43 (182)
T ss_dssp             CCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEE
T ss_pred             CCCCccEEEEeCCCcHHHHHHHHhCCCCceEEEEEEeCCeEE
Confidence            68999999996442           248999999984 4433