Citrus Sinensis ID: 025025

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV
ccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccccccccccccccccHHHcccccccccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccHHHHcccHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEccccccEEEEEEEEcccccEEEEEEccccccEEEcccccccEEEEccccccccEEEEEEEccccEEEEccccccccccccEEEcccccc
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccEEcccEEEEEEEEccccEEEEcccccccccEccEEccccccc
MALFRMLCFFSVALSLFATanakipgvfaggpwqsahatfyggsdasgtmggacgygnlysqgygvnTAALSTALFnnglscgacfelkcggdpqwcnpgnpailitatnfcppnfaqpsdnggwcnpprphfdlaMPMFLKLAQYRAgivpvsyrrvpcrkrggirftinGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFrvtgsdrrtstswnvapanwqfgqtfsgknfrv
MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVpvsyrrvpcrkRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRtstswnvapanwqfgqtfsgknfrv
MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV
**LFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQT********
****RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFR*
MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV
MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK*F**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNFRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
O48818257 Expansin-A4 OS=Arabidopsi yes no 0.976 0.984 0.833 1e-125
O80932262 Expansin-A3 OS=Arabidopsi no no 0.988 0.977 0.832 1e-124
Q9LZ99258 Expansin-A9 OS=Arabidopsi no no 0.984 0.988 0.803 1e-122
Q38865257 Expansin-A6 OS=Arabidopsi no no 0.992 1.0 0.806 1e-119
Q9M2S9260 Expansin-A16 OS=Arabidops no no 0.976 0.973 0.783 1e-118
Q852A1264 Expansin-A7 OS=Oryza sati yes no 0.926 0.909 0.834 1e-118
O80622253 Expansin-A15 OS=Arabidops no no 0.949 0.972 0.704 2e-97
Q9FMA0255 Expansin-A14 OS=Arabidops no no 0.942 0.956 0.688 2e-96
Q40636251 Expansin-A2 OS=Oryza sati no no 0.868 0.896 0.726 1e-94
Q0DHB7246 Expansin-A4 OS=Oryza sati no no 0.949 1.0 0.689 4e-94
>sp|O48818|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1 Back     alignment and function desciption
 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/253 (83%), Positives = 230/253 (90%)

Query: 7   LCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGV 66
           L        LF+ A+A+IPG+++GG WQ+AHATFYGGSDASGTMGGACGYGNLYSQGYG 
Sbjct: 5   LAILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGT 64

Query: 67  NTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWC 126
           NTAALSTALFNNG+SCGACFELKC  DPQWC+ G+P+ILITATNFCPPN AQPSDNGGWC
Sbjct: 65  NTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWC 124

Query: 127 NPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAG 186
           NPPR HFDLAMP+FLK+AQYRAGIVPVSYRRVPCRKRGGIRFTING RYFNLVL+TNVAG
Sbjct: 125 NPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAG 184

Query: 187 AGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANW 246
           AGDIVR SVKG+ T W+S+SRNWGQNWQSNA LVGQALSFRVTGSDRRTSTSWN+ P+NW
Sbjct: 185 AGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244

Query: 247 QFGQTFSGKNFRV 259
           QFGQTF GKNFRV
Sbjct: 245 QFGQTFVGKNFRV 257
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|O80932|EXPA3_ARATH Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZ99|EXPA9_ARATH Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1 Back     alignment and function description
>sp|Q38865|EXPA6_ARATH Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2 Back     alignment and function description
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description
>sp|Q852A1|EXPA7_ORYSJ Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1 Back     alignment and function description
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function description
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
130766314256 expansin [Litchi chinensis] 0.988 1.0 0.880 1e-130
732905258 orf [Pisum sativum] 0.996 1.0 0.864 1e-128
51507371258 expansin [Pyrus communis] 0.996 1.0 0.849 1e-128
167860792256 expansin 1 [Dimocarpus longan] 0.988 1.0 0.864 1e-128
356567941258 PREDICTED: expansin-A4-like [Glycine max 0.996 1.0 0.857 1e-127
29467509258 expansin [Pyrus communis] 0.996 1.0 0.841 1e-127
29466643260 expansin [Prunus persica] 0.972 0.969 0.853 1e-126
356569469256 PREDICTED: expansin-A3-like [Glycine max 0.980 0.992 0.834 1e-126
225434923258 PREDICTED: expansin-A4 [Vitis vinifera] 0.996 1.0 0.837 1e-126
358357123260 expansin 2 [Prunus salicina] 0.972 0.969 0.849 1e-125
>gi|130766314|gb|ABO32367.1| expansin [Litchi chinensis] Back     alignment and taxonomy information
 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/259 (88%), Positives = 243/259 (93%), Gaps = 3/259 (1%)

Query: 1   MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLY 60
           MA+F +LCF S+   LF TANAKIPGV+ GGPW+SAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MAVFNVLCFLSL---LFLTANAKIPGVYTGGPWESAHATFYGGSDASGTMGGACGYGNLY 57

Query: 61  SQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPS 120
           SQGYGVNTAALSTALFNNGLSCGACFELKC  DP+WC PGNP+IL+TATNFCPPNFAQPS
Sbjct: 58  SQGYGVNTAALSTALFNNGLSCGACFELKCVADPRWCLPGNPSILVTATNFCPPNFAQPS 117

Query: 121 DNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVL 180
           D+GGWCNPPR HFDLAMPMFLK+AQYRAGIVPVSYRRVPCRK+GGIRFTINGFRYFNLVL
Sbjct: 118 DDGGWCNPPRTHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVL 177

Query: 181 VTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWN 240
           VTNVAGAGDIV+VSVKG+ T WL+MSRNWGQNWQSNA LVGQALSFRVTGSDRRTSTSWN
Sbjct: 178 VTNVAGAGDIVKVSVKGSKTGWLTMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWN 237

Query: 241 VAPANWQFGQTFSGKNFRV 259
           VA +NWQFGQTF GKNFRV
Sbjct: 238 VAKSNWQFGQTFVGKNFRV 256

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|732905|emb|CAA59470.1| orf [Pisum sativum] Back     alignment and taxonomy information
>gi|51507371|emb|CAH18933.1| expansin [Pyrus communis] Back     alignment and taxonomy information
>gi|167860792|gb|ACA05164.1| expansin 1 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|356567941|ref|XP_003552173.1| PREDICTED: expansin-A4-like [Glycine max] Back     alignment and taxonomy information
>gi|29467509|dbj|BAC67193.1| expansin [Pyrus communis] Back     alignment and taxonomy information
>gi|29466643|dbj|BAC66787.1| expansin [Prunus persica] Back     alignment and taxonomy information
>gi|356569469|ref|XP_003552923.1| PREDICTED: expansin-A3-like [Glycine max] Back     alignment and taxonomy information
>gi|225434923|ref|XP_002283530.1| PREDICTED: expansin-A4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358357123|gb|AEU08407.1| expansin 2 [Prunus salicina] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.992 1.0 0.822 1.3e-121
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.988 0.977 0.832 3.6e-121
TAIR|locus:2053260257 EXPA6 "expansin A6" [Arabidops 0.992 1.0 0.806 2e-120
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.984 0.988 0.803 1.8e-117
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.976 0.973 0.787 3.9e-115
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.938 0.960 0.712 8.4e-97
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.942 0.956 0.688 5.3e-95
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.876 0.876 0.724 1.8e-94
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.926 0.872 0.688 5e-92
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.868 0.882 0.719 2.1e-91
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 213/259 (82%), Positives = 237/259 (91%)

Query:     1 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLY 60
             MA+ ++   F+  + LF+ A+A+IPG+++GG WQ+AHATFYGGSDASGTMGGACGYGNLY
Sbjct:     1 MAI-KLAILFTTFV-LFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLY 58

Query:    61 SQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPS 120
             SQGYG NTAALSTALFNNG+SCGACFELKC  DPQWC+ G+P+ILITATNFCPPN AQPS
Sbjct:    59 SQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPS 118

Query:   121 DNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVL 180
             DNGGWCNPPR HFDLAMP+FLK+AQYRAGIVPVSYRRVPCRKRGGIRFTING RYFNLVL
Sbjct:   119 DNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVL 178

Query:   181 VTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWN 240
             +TNVAGAGDIVR SVKG+ T W+S+SRNWGQNWQSNA LVGQALSFRVTGSDRRTSTSWN
Sbjct:   179 ITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWN 238

Query:   241 VAPANWQFGQTFSGKNFRV 259
             + P+NWQFGQTF GKNFRV
Sbjct:   239 MVPSNWQFGQTFVGKNFRV 257
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0006949 "syncytium formation" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80622EXP15_ARATHNo assigned EC number0.7040.94980.9723nono
Q38865EXPA6_ARATHNo assigned EC number0.80690.99221.0nono
Q38866EXPA2_ARATHNo assigned EC number0.71920.86870.8823nono
Q9M2S9EXP16_ARATHNo assigned EC number0.78340.97680.9730nono
Q9LZ99EXPA9_ARATHNo assigned EC number0.80390.98450.9883nono
O48818EXPA4_ARATHNo assigned EC number0.83390.97680.9844yesno
A2Y5R6EXPA4_ORYSINo assigned EC number0.68950.94981.0N/Ano
O22874EXPA8_ARATHNo assigned EC number0.71050.86870.8893nono
Q40636EXPA2_ORYSJNo assigned EC number0.72680.86870.8964nono
O80932EXPA3_ARATHNo assigned EC number0.83260.98840.9770nono
Q9LDR9EXP10_ARATHNo assigned EC number0.72480.87640.9116nono
Q852A1EXPA7_ORYSJNo assigned EC number0.83470.92660.9090yesno
Q4PNY1EXP11_ORYSJNo assigned EC number0.70450.83780.875nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-121
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-115
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 4e-53
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 6e-34
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 8e-25
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 1e-20
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 3e-05
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  345 bits (887), Expect = e-121
 Identities = 168/228 (73%), Positives = 189/228 (82%), Gaps = 2/228 (0%)

Query: 30  GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELK 89
           G  W  AHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE+K
Sbjct: 22  GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIK 81

Query: 90  CGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAG 149
           C  D  WC PG  +I+ITATNFCPPN A P+++GGWCNPP+ HFDL+ P+F K+AQY+AG
Sbjct: 82  CVNDNIWCLPG--SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAG 139

Query: 150 IVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNW 209
           IVPV YRRV CRK GGIRFTING  YFNLVL+TNV GAGDIV VS+KG+ + W +MSRNW
Sbjct: 140 IVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNW 199

Query: 210 GQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 257
           GQNWQSN+ L GQALSF+VT SD RT  S N AP+NW FGQT++G  F
Sbjct: 200 GQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.95
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.94
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.94
PLN00115118 pollen allergen group 3; Provisional 99.89
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.87
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.96
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.08
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 98.01
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.83
PRK10672361 rare lipoprotein A; Provisional 97.41
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 93.34
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.8e-69  Score=480.93  Aligned_cols=231  Identities=65%  Similarity=1.219  Sum_probs=216.9

Q ss_pred             CccCCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcC--CCCCCCCCCCc
Q 025025           26 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG--DPQWCNPGNPA  103 (259)
Q Consensus        26 ~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~--~p~~C~~g~~s  103 (259)
                      |.+..++|++|+|||||++++.|+++|||||+++...+++.++||+|+++|++|++||+||||+|..  +|..|.++ ++
T Consensus        23 ~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~s  101 (256)
T PLN00193         23 NAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-AS  101 (256)
T ss_pred             cCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-Ce
Confidence            4455578999999999999998999999999998888899999999999999999999999999952  45689876 59


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEeecccCCceEEEEcCcCcEEEEEEEe
Q 025025          104 ILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTN  183 (259)
Q Consensus       104 v~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~ss~yw~~v~v~n  183 (259)
                      |+|+|||.||++|..|.+|++||++++.|||||..||.+||.+..|+++|+||||+|+++|||+|++++++||++|+|.|
T Consensus       102 V~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~n  181 (256)
T PLN00193        102 VTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISN  181 (256)
T ss_pred             EEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEE
Confidence            99999999999998899999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcceeEEEEEecCcceeEcccCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecC-ce
Q 025025          184 VAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK-NF  257 (259)
Q Consensus       184 ~~g~~~I~sVei~~~g~~w~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~v~a~~viP~~w~~G~~y~~~-qf  257 (259)
                      ++|+++|++|+||+++++|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus       182 v~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        182 VGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             eCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence            999999999999998778999999999999999878777999999999999999999999999999999996 97

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 3e-20
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 7e-18
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 32/239 (13%)
Query: 31  GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEL 88
           G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E+
Sbjct: 17  GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76
Query: 89  KCGGDPQWCNPGNPA-ILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-- 145
           +C   P+ C+ GNP  + IT  N+ P     P            HFDL+   F  LA+  
Sbjct: 77  RCKEKPE-CS-GNPVTVYITDMNYEP---IAPY-----------HFDLSGKAFGSLAKPG 120
Query: 146 -----YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 196
                   GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + ++
Sbjct: 121 LNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 180
Query: 197 GA-NTQWLSMSRNWGQNWQSN-AQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 253
              + +W  M  +WG  W+ + A+ +    S R+T    +   + +V PANW+    ++
Sbjct: 181 DKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 1e-71
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 3e-70
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 9e-59
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 5e-30
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 3e-29
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 2e-26
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 1e-25
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  219 bits (558), Expect = 1e-71
 Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 31/245 (12%)

Query: 29  AGGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACF 86
             G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+
Sbjct: 15  YNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCY 74

Query: 87  ELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ- 145
           E++C   P+        + IT  N+ P                  HFDL+   F  LA+ 
Sbjct: 75  EVRCKEKPECSGNP-VTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKP 119

Query: 146 ------YRAGIVPVSYRRVPCRKRGGIRFTIN----GFRYFNLVLVTNVAGAGDIVRVSV 195
                    GI+ V +RRV C+   G +   +        +  VLV  VA  GDIV + +
Sbjct: 120 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 179

Query: 196 KGANT-QWLSMSRNWGQNWQSNAQLV-GQALSFRVTGSDRRTSTSWNVAPANWQFGQTF- 252
           +   + +W  M  +WG  W+ +         S R+T    +   + +V PANW+    + 
Sbjct: 180 QDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239

Query: 253 SGKNF 257
           S   F
Sbjct: 240 SNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.97
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.95
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.93
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.9
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.63
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.23
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 97.89
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.87
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 97.84
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.73
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.68
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.64
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 95.23
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
Probab=100.00  E-value=4.9e-63  Score=441.56  Aligned_cols=210  Identities=29%  Similarity=0.619  Sum_probs=187.5

Q ss_pred             CCCeeEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEE
Q 025025           30 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILIT  107 (259)
Q Consensus        30 ~~~~~~g~aT~Yg~~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~  107 (259)
                      .++|+.|+||||+++++.|+  ++|||||++++..|++.++||+|+++|++|++||+||||+|.++| .|.++  +|+|+
T Consensus        16 ~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~-~C~~~--~v~V~   92 (241)
T 1n10_A           16 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPE-ACSGE--PVVVH   92 (241)
T ss_dssp             CCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSST-TBCSC--CEEEE
T ss_pred             cCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCC-ccCCC--CEEEE
Confidence            47899999999999987777  789999999888889999999999999999999999999998754 69865  89999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhcc-------ccCCeEEEEEEEeecccCC--ceEEEEc--CcCcE
Q 025025          108 ATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG--GIRFTIN--GFRYF  176 (259)
Q Consensus       108 VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g--ni~~~v~--ss~yw  176 (259)
                      |||+|+            |..+..|||||+.||.+||.       +..|+|+|+||||+|+++|  ||+|+|+  |++||
T Consensus        93 VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~  160 (241)
T 1n10_A           93 ITDDNE------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY  160 (241)
T ss_dssp             EEEECS------------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTE
T ss_pred             EeEecC------------CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcce
Confidence            999996            55467999999999999999       6899999999999999984  8999999  79999


Q ss_pred             EEEEEEeecCCcceeEEEEEecC-cceeEcccCCCceEEeCCC--CCCcceEEEEEecCCcEEEEccccCCCCCCCcEEe
Q 025025          177 NLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQNWQSNAQ--LVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS  253 (259)
Q Consensus       177 ~~v~v~n~~g~~~I~sVei~~~g-~~w~~m~r~~gn~W~~~~~--~~g~p~~vRvTs~~G~~v~a~~viP~~w~~G~~y~  253 (259)
                      ++|||+|++|.++|++|||++++ +.|++|+|+|||+|+++..  |.+ ||+||||+.+|++|+++||||++|++|++|+
T Consensus       161 ~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~  239 (241)
T 1n10_A          161 LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE  239 (241)
T ss_dssp             EEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSEEEE
T ss_pred             EEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCCEEe
Confidence            99999999999999999999987 5899999999999999774  777 9999999999999999999999999999999


Q ss_pred             cC
Q 025025          254 GK  255 (259)
Q Consensus       254 ~~  255 (259)
                      ++
T Consensus       240 ~~  241 (241)
T 1n10_A          240 SK  241 (241)
T ss_dssp             C-
T ss_pred             CC
Confidence            74
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 3e-48
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 4e-46
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 3e-31
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 6e-26
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  155 bits (393), Expect = 3e-48
 Identities = 34/171 (19%), Positives = 44/171 (25%), Gaps = 36/171 (21%)

Query: 33  WQSAHATFYGGSDASGTMGGACGYGNL-----YSQGYGVNTAALSTALFNN------GLS 81
              A  T Y  S       GACG G       +    G   AA S   F++      G  
Sbjct: 14  KSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQH 68

Query: 82  CGACFELKCGGDPQWCNPGNP----AILITATNFCPPNFAQPSDNGGWCNPPRP------ 131
           CG C +L   G       G      +     TN CP        N  WCN          
Sbjct: 69  CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGHNK 124

Query: 132 -----HFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN 177
                H DL      ++          ++  V C               + 
Sbjct: 125 YGYELHLDL-ENGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.92
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.57
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 94.56
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=3.5e-36  Score=247.15  Aligned_cols=126  Identities=32%  Similarity=0.654  Sum_probs=104.6

Q ss_pred             cCCccCCCCeeEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCCCCCC
Q 025025           24 IPGVFAGGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGN  101 (259)
Q Consensus        24 ~~~~~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~  101 (259)
                      ++..|. ++|++|+||||+++++.++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.+ +..|.++ 
T Consensus         9 ~~a~~~-~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~-   85 (143)
T d1n10a2           9 ITATYG-DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGE-   85 (143)
T ss_dssp             CCCBCC-CSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSC-
T ss_pred             cccccC-CCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCC-
Confidence            344464 8999999999998877654  4799999998888889999999999999999999999999987 4578755 


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccc-------cCCeEEEEEEEeecccCCc
Q 025025          102 PAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-------RAGIVPVSYRRVPCRKRGG  165 (259)
Q Consensus       102 ~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~-------~~G~v~i~~r~V~C~~~gn  165 (259)
                       +|+|+|||.||+           |+ +..|||||+.||.+||++       +.|+|+|+||||+|+++|+
T Consensus        86 -sv~V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2          86 -PVVVHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             -CEEEEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             -CEEEEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCCC
Confidence             899999999997           33 468999999999999985       6799999999999999873
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure