Citrus Sinensis ID: 025029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEEEEEEEEEEEEEccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEcccccEEEEEEEEccEcEEEccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccEcc
Coil and Loop (DISEMBL)
maqnqrltvvPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSrqeniagvkipkfeyftdgetkndltglarggqQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSAQNLlsagekdediif
Flexible Loop (DISEMBL)
maqnqrltvvptvtmlgvMKSRLVGATRghallkkksdaltvqFRQILKNIvttkesmgevMKDSSFALIEAKYVAGENIKHIVlenvqnasikvrsrqeniagvkipkfeyftdGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIkttnrrvnalenvvkprlentityikgeldeleredFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVslqkgisiksaqnllsagekdediif
Low Complexity Region (SEG)
MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF
Disordered region (IsUnstruct)
******LTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKK************************************************
Disordered Region (DISOPRED)
******L**VPTVTMLGV*KS**VGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKK******************************************LSAGEKDEDIIF
Disordered Region (DISEMBL)
MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF
Disordered Region (DISPRO)
******LTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQ***********************************F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVxxxxxxxxxxxxxxxxxxxxxDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q9XGM1	261	V-type proton ATPase subu	yes	no	0.996	0.988	0.791	1e-119
Q9V7D2	246	V-type proton ATPase subu	yes	no	0.949	1.0	0.513	2e-65
Q9NEF6	249	Probable V-type proton AT	no	no	0.961	1.0	0.509	2e-64
Q5RCS8	247	V-type proton ATPase subu	yes	no	0.949	0.995	0.513	4e-64
Q9Y5K8	247	V-type proton ATPase subu	yes	no	0.949	0.995	0.513	4e-64
O97755	247	V-type proton ATPase subu	yes	no	0.949	0.995	0.509	1e-63
P39942	247	V-type proton ATPase subu	yes	no	0.949	0.995	0.517	1e-63
P34462	257	V-type proton ATPase subu	yes	no	0.961	0.968	0.492	5e-63
Q61IU3	259	V-type proton ATPase subu	N/A	no	0.822	0.822	0.556	6e-63
Q86A77	257	V-type proton ATPase subu	yes	no	0.779	0.785	0.570	4e-62

>sp|Q9XGM1|VATD_ARATH V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2

 Score =  427 bits (1098), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/259 (79%), Positives = 234/259 (90%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            QN RL VVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFR +LK IVT KESMG++
Sbjct: 3   GQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDM 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL E KYVAG+N+KH+VLENV+ A++KVRSR ENIAGVK+PKF++F++GETKND
Sbjct: 63  MKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQV+ CR AYVKAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKP+L
Sbjct: 123 LTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYK+RE+ERQ A++K+F EE   E +S+Q+GISI
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISI 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
            +A+N L  G EKD DIIF
Sbjct: 243 NAARNFLVGGAEKDSDIIF 261

Subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9V7D2|VATD1_DROME V-type proton ATPase subunit D 1 OS=Drosophila melanogaster GN=Vha36-1 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/259 (51%), Positives = 185/259 (71%), Gaps = 13/259 (5%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           M+   RL + P+     +MK+RL GA +GH LLKKK+DAL ++FR IL  I+ TK  MG+
Sbjct: 1   MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
           VMK+++F+L EAK+ +G +I  +VL+NV  A IK+R++++N+AGV +P FE + DG    
Sbjct: 61  VMKEAAFSLAEAKFTSG-DINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTY 119

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           +L GLARGGQQ+ + +  Y  A++LLVELASLQTSF+TLDE IK TNRRVNA+E+V+ PR
Sbjct: 120 ELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 179

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           ++ T+ YI  ELDELERE+F+RLKKIQ  KKRE  R  A +K+      AE   LQ+GI 
Sbjct: 180 IDRTLAYIISELDELEREEFYRLKKIQD-KKRE-ARIKADAKK------AE--LLQQGID 229

Query: 241 IKSAQNLLSAGEKDEDIIF 259
           ++   N+L  G  D+D++F
Sbjct: 230 VRQQANILDEG--DDDVLF 246

Subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Drosophila melanogaster (taxid: 7227)

>sp|Q9NEF6|VATD2_DROME Probable V-type proton ATPase subunit D 2 OS=Drosophila melanogaster GN=Vha36-3 PE=3 SV=1

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/259 (50%), Positives = 181/259 (69%), Gaps = 10/259 (3%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           MA   RL + P+     +MKSRL GAT+GH LLKKK+DAL ++FR IL  I+ TK  MG+
Sbjct: 1   MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
           VMK+++F+L E K+  G +I  IVL+NV  A IK+R++++N+AGV +P FE +TDG    
Sbjct: 61  VMKEAAFSLAEVKFTTG-DINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTY 119

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           +L GLARGGQQ+ + +  Y  A+ LLV+LASLQTSF+TLD+ IK TNRRVNA+E+V+ PR
Sbjct: 120 ELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPR 179

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           +  TI YI  ELDELERE+F+RLKKIQ  KKRE  +  AS K   E++   +++      
Sbjct: 180 INRTIEYIISELDELEREEFYRLKKIQD-KKREARK--ASDKLRAEQRLLGQMA-----E 231

Query: 241 IKSAQNLLSAGEKDEDIIF 259
            +  QN+L   + DED++F
Sbjct: 232 AQEVQNILDE-DGDEDLLF 249

Subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Drosophila melanogaster (taxid: 7227)

>sp|Q5RCS8|VATD_PONAB V-type proton ATPase subunit D OS=Pongo abelii GN=ATP6V1D PE=2 SV=1

 Score =  244 bits (623), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 133/259 (51%), Positives = 185/259 (71%), Gaps = 13/259 (5%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
           VM++++F+L EAK+ AG +    V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct: 61  VMREAAFSLAEAKFTAG-DFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           +E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+    S++ +E++ A    L+    
Sbjct: 180 IERTLAYIITELDEREREEFYRLKKIQEKKKILKEK----SEKDLEQRRAAGEVLEPA-- 233

Query: 241 IKSAQNLLSAGEKDEDIIF 259
                NLL A EKDED++F
Sbjct: 234 -----NLL-AEEKDEDLLF 246

Subunit of the peripheral V1 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Pongo abelii (taxid: 9601)

>sp|Q9Y5K8|VATD_HUMAN V-type proton ATPase subunit D OS=Homo sapiens GN=ATP6V1D PE=1 SV=1

 Score =  244 bits (623), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 133/259 (51%), Positives = 185/259 (71%), Gaps = 13/259 (5%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
           VM++++F+L EAK+ AG +    V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct: 61  VMREAAFSLAEAKFTAG-DFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           +E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+    S++ +E++ A    L+    
Sbjct: 180 IERTLAYIITELDEREREEFYRLKKIQEKKKILKEK----SEKDLEQRRAAGEVLEPA-- 233

Query: 241 IKSAQNLLSAGEKDEDIIF 259
                NLL A EKDED++F
Sbjct: 234 -----NLL-AEEKDEDLLF 246

Subunit of the peripheral V1 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Homo sapiens (taxid: 9606)

>sp|O97755|VATD_RABIT V-type proton ATPase subunit D OS=Oryctolagus cuniculus GN=ATP6V1D PE=2 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/259 (50%), Positives = 181/259 (69%), Gaps = 13/259 (5%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
           VM++++F+L EAK+ AG +     ++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct: 61  VMREAAFSLAEAKFTAG-DFSTTAIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           +E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+   S K   + + A +V       
Sbjct: 180 IERTLAYIITELDEREREEFYRLKKIQEKKKILKEK---SEKDLEQRRAAGEVM------ 230

Query: 241 IKSAQNLLSAGEKDEDIIF 259
                NLL A EKDED++F
Sbjct: 231 --EPANLL-AEEKDEDLLF 246

Subunit of the peripheral V1 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Oryctolagus cuniculus (taxid: 9986)

>sp|P39942|VATD_BOVIN V-type proton ATPase subunit D OS=Bos taurus GN=ATP6V1D PE=1 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/259 (51%), Positives = 184/259 (71%), Gaps = 13/259 (5%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
           VM++++F+L EAK+ AG +    V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct: 61  VMREAAFSLAEAKFTAG-DFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVN +E+V+ PR
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNRIEHVIIPR 179

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           +E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+   S K   + + A +V       
Sbjct: 180 IERTLAYIITELDEREREEFYRLKKIQEKKKILKEK---SDKDLEQRRAAGEV------- 229

Query: 241 IKSAQNLLSAGEKDEDIIF 259
           I+ A NLL A EKDED++F
Sbjct: 230 IEPA-NLL-AEEKDEDLLF 246

Subunit of the peripheral V1 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Bos taurus (taxid: 9913)

>sp|P34462|VATD_CAEEL V-type proton ATPase subunit D OS=Caenorhabditis elegans GN=vha-14 PE=3 SV=1

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 176/254 (69%), Gaps = 5/254 (1%)

Query: 6   RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDS 65
           R+ V P+     +MK+RL GA +GH+LLKKK+DAL ++FR IL+ IV  K  MGEVMK++
Sbjct: 8   RIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVMKEA 67

Query: 66  SFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGL 125
           +F+L EAK+ AG+   H V++NV  A  +VR ++EN+ GV +P F+ + DG    DLTGL
Sbjct: 68  AFSLAEAKFTAGD-FSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLTGL 126

Query: 126 ARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTI 185
            +GG  + + +  Y KAIELLVELA+LQT F+TLDEAIK TNRRVNA+E+V+ PR+ENT+
Sbjct: 127 GKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIENTL 186

Query: 186 TYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSAQ 245
           TYI  ELDE+ERE+FFR+KKIQ  KK+ ++ Q A+ K        E  +  +       +
Sbjct: 187 TYIVTELDEMEREEFFRMKKIQANKKK-LKEQEAAQKALEGPGPGEDAAHSEN---NPPR 242

Query: 246 NLLSAGEKDEDIIF 259
           NLL++ E +  ++F
Sbjct: 243 NLLASEEDNLPVLF 256

Subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61IU3|VATD_CAEBR V-type proton ATPase subunit D OS=Caenorhabditis briggsae GN=vha-14 PE=3 SV=1

 Score =  240 bits (613), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 119/214 (55%), Positives = 160/214 (74%), Gaps = 1/214 (0%)

Query: 6   RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDS 65
           R+ V P+     +MK+RL GA +GH+LLKKK+DAL ++FR ILK IV  K  MGEVMK++
Sbjct: 9   RIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILKKIVENKVLMGEVMKEA 68

Query: 66  SFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGL 125
           +F+L EAK+ AG+   H V++NV  A  +VR ++EN+ GV +P F+ + DG    DLTGL
Sbjct: 69  AFSLAEAKFTAGD-FSHTVIQNVSQAQYRVRMKKENVVGVLLPVFDAYQDGPDAYDLTGL 127

Query: 126 ARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTI 185
            +GG  + + +  Y KAIELLVELA+LQT F+TLDEAIK TNRRVNA+E+V+ PR+ENT+
Sbjct: 128 GKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIENTL 187

Query: 186 TYIKGELDELEREDFFRLKKIQGYKKREIERQLA 219
           TYI  ELDE+ERE+FFR+KKIQ  KK+  E++ A
Sbjct: 188 TYIVTELDEMEREEFFRMKKIQANKKKLKEQEAA 221

Subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q86A77|VATD_DICDI V-type proton ATPase subunit D OS=Dictyostelium discoideum GN=atp6v1d PE=1 SV=1

 Score =  238 bits (607), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 154/205 (75%), Gaps = 3/205 (1%)

Query: 1   MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
           M+   RL + PT   L VMK++L GA  GH+LLKKKSDALT++FR+IL NIV  K+ MG 
Sbjct: 1   MSGKNRLNIFPTRMALTVMKTKLKGAVTGHSLLKKKSDALTIRFRRILANIVENKQLMGT 60

Query: 61  VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
            M+D+SF+L  AKY AGE   + V+ENV N +I V+   EN+AGV +P FE  ++G   N
Sbjct: 61  TMRDASFSLAAAKYAAGE-FSNSVIENVSNPTIAVKMTTENVAGVHLPTFEKISEGVVSN 119

Query: 121 --DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVK 178
             +LTGL++GGQQ+ + R +++KA+E L+ LASLQT+F+TLDE IK TNRRVNA+E VVK
Sbjct: 120 SQELTGLSKGGQQINKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVK 179

Query: 179 PRLENTITYIKGELDELEREDFFRL 203
           P+LENTI+YI  ELDE ERE+F+RL
Sbjct: 180 PKLENTISYIITELDESEREEFYRL 204

Subunit of the peripheral V1 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
255564076	261	ATP synthase subunit d, putative [Ricinu	0.996	0.988	0.876	1e-130
255583878	261	ATP synthase subunit d, putative [Ricinu	0.996	0.988	0.872	1e-130
225446740	261	PREDICTED: V-type proton ATPase subunit	0.996	0.988	0.884	1e-129
224060238	260	predicted protein [Populus trichocarpa]	0.984	0.980	0.870	1e-126
449444755	261	PREDICTED: V-type proton ATPase subunit	0.996	0.988	0.849	1e-125
297820706	261	predicted protein [Arabidopsis lyrata su	0.996	0.988	0.795	1e-118
5360953	261	v-ATPase subunit D [Arabidopsis thaliana	0.996	0.988	0.795	1e-118
15231126	261	V-type proton ATPase subunit D [Arabidop	0.996	0.988	0.791	1e-117
356523277	258	PREDICTED: V-type proton ATPase subunit	0.984	0.988	0.803	1e-115
356526264	258	PREDICTED: V-type proton ATPase subunit	0.980	0.984	0.807	1e-115

>gi|255564076|ref|XP_002523036.1| ATP synthase subunit d, putative [Ricinus communis] gi|223537719|gb|EEF39340.1| ATP synthase subunit d, putative [Ricinus communis]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/259 (87%), Positives = 246/259 (94%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            Q QRL VVPTVTML V+K+RLVGATRGHALLKKKSDALTVQFRQILK IV+TKESMGE+
Sbjct: 3   GQGQRLNVVPTVTMLAVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGEI 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL EAKYVAGEN+KH+VLENV NAS+KVRSRQEN+AGVK+PKF+YFT+GETKND
Sbjct: 63  MKSSSFALTEAKYVAGENVKHVVLENVHNASLKVRSRQENVAGVKLPKFDYFTEGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQVQ CRAAYVK+IE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL
Sbjct: 123 LTGLARGGQQVQACRAAYVKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYKKREIERQLA++KQF EEQFAEK+SLQKGIS+
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKKREIERQLAAAKQFAEEQFAEKISLQKGISL 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
           KSA N+LSA  EKDEDIIF
Sbjct: 243 KSAHNMLSAAMEKDEDIIF 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583878|ref|XP_002532689.1| ATP synthase subunit d, putative [Ricinus communis] gi|223527572|gb|EEF29689.1| ATP synthase subunit d, putative [Ricinus communis]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/259 (87%), Positives = 246/259 (94%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            Q QRL VVPTVTML V+K+RL+GATRGHALLKKKSDALTVQFRQILK IV+TKESMGE+
Sbjct: 3   GQGQRLNVVPTVTMLAVVKARLIGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGEI 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL EAKYVAGEN+KH+VLENVQNAS+KVRSRQEN+AGVK+PKFEYFT+ +TKND
Sbjct: 63  MKASSFALTEAKYVAGENVKHVVLENVQNASLKVRSRQENVAGVKLPKFEYFTESDTKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQVQ CRAAYVK+IE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL
Sbjct: 123 LTGLARGGQQVQACRAAYVKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYKKREIERQLA++KQF EEQFAEK+SLQKGIS+
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKKREIERQLAAAKQFAEEQFAEKISLQKGISL 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
           KSA N+LSA  EKDEDIIF
Sbjct: 243 KSAHNMLSAAMEKDEDIIF 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446740|ref|XP_002282632.1| PREDICTED: V-type proton ATPase subunit D isoform 1 [Vitis vinifera] gi|359485322|ref|XP_003633257.1| PREDICTED: V-type proton ATPase subunit D isoform 2 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/259 (88%), Positives = 246/259 (94%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            Q+QRLTVVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFRQILK IV+TKESMGEV
Sbjct: 3   GQSQRLTVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGEV 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL EAKYVAGENIKH+VLENVQNAS+KVRSRQEN+AGVK+PKFEYF +GETKND
Sbjct: 63  MKASSFALTEAKYVAGENIKHVVLENVQNASLKVRSRQENVAGVKLPKFEYFNEGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQVQ CRAAYVKAIE+LVELASLQTSFLTLD+AIKTTNRRVNALENVVKPRL
Sbjct: 123 LTGLARGGQQVQLCRAAYVKAIEVLVELASLQTSFLTLDDAIKTTNRRVNALENVVKPRL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI YIKGELDELEREDFFRLKKIQGYKKRE+ERQ+AS+K+F E+QFA KVSLQKGIS+
Sbjct: 183 ENTIIYIKGELDELEREDFFRLKKIQGYKKREMERQMASAKEFSEDQFAGKVSLQKGISL 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
            +A NLLSA  EKDEDIIF
Sbjct: 243 NAAHNLLSAAMEKDEDIIF 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060238|ref|XP_002300100.1| predicted protein [Populus trichocarpa] gi|222847358|gb|EEE84905.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/255 (87%), Positives = 240/255 (94%)

Query: 5   QRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKD 64
           QRL VVPTVT+LGV+K+RLVGATRGHALLKKKSDALTVQFRQILK IV+TKESMG+ MK 
Sbjct: 6   QRLNVVPTVTVLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDKMKA 65

Query: 65  SSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTG 124
           SSFAL EAKYVAGENIKH VLENVQ A++KVRSRQEN+AGVK+PKF+YF +GETKNDLTG
Sbjct: 66  SSFALTEAKYVAGENIKHTVLENVQTATLKVRSRQENVAGVKLPKFDYFHEGETKNDLTG 125

Query: 125 LARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENT 184
           LARGGQQVQ CRAAYVKAIE+LVELASLQTSF+TLD AIKTTNRRVNALENVVKPRLENT
Sbjct: 126 LARGGQQVQACRAAYVKAIEVLVELASLQTSFMTLDTAIKTTNRRVNALENVVKPRLENT 185

Query: 185 ITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIKSA 244
           ITYIKGELDELEREDFFRLKKIQG+KKREIERQLA++KQF E Q AEKVSLQKGIS+ SA
Sbjct: 186 ITYIKGELDELEREDFFRLKKIQGFKKREIERQLAAAKQFAEGQVAEKVSLQKGISLNSA 245

Query: 245 QNLLSAGEKDEDIIF 259
           QN+LSA EKDEDIIF
Sbjct: 246 QNMLSASEKDEDIIF 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444755|ref|XP_004140139.1| PREDICTED: V-type proton ATPase subunit D-like [Cucumis sativus] gi|449481088|ref|XP_004156078.1| PREDICTED: V-type proton ATPase subunit D-like [Cucumis sativus]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/259 (84%), Positives = 240/259 (92%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            Q QRL VVPTVTMLG MK+RLVGATRGHALLKKKSDALTVQFRQILK IV+ KESMG+V
Sbjct: 3   GQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGDV 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK S+F+L EAKYVAG+NIKHIVLENVQ A+IK+RSRQENIAGVK+PKFE+++DGETKND
Sbjct: 63  MKTSAFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQ+Q CR AYVKAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR+
Sbjct: 123 LTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRI 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYK+REIERQ A++K F EEQ AEKVSLQKG+SI
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRANAKLFAEEQLAEKVSLQKGVSI 242

Query: 242 KSAQNLLS-AGEKDEDIIF 259
            SA NLLS A EKDEDIIF
Sbjct: 243 SSAHNLLSAAAEKDEDIIF 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820706|ref|XP_002878236.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324074|gb|EFH54495.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/259 (79%), Positives = 233/259 (89%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            QN RL VVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFR +LK IVT KESMG++
Sbjct: 3   GQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDM 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL E KYVAGEN+KH+VLENV+ A++KVRSR ENIAGVK+PKF++F++GETKND
Sbjct: 63  MKTSSFALTEVKYVAGENVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQVQ CR AY+KAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKP+L
Sbjct: 123 LTGLARGGQQVQACRVAYLKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYK+RE+ERQ A +K+F EE   E +S+Q+GISI
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAAHAKEFAEEMVLEGISMQRGISI 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
            +A+N L  G EKD DIIF
Sbjct: 243 NAARNFLVGGAEKDSDIIF 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5360953|emb|CAB46439.1| v-ATPase subunit D [Arabidopsis thaliana]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/259 (79%), Positives = 234/259 (90%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            QN RL VVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFR +LK IVT KESMGE+
Sbjct: 3   GQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGEM 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL E KYVAG+N+KH+VLENV+ A++KVRSR ENIAGVK+PKF++F++GETKND
Sbjct: 63  MKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQV+ CR AYVKAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKP+L
Sbjct: 123 LTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYK+RE+ERQ A++K+F EE   E +S+Q+GISI
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISI 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
            +A+N L  G EKD DIIF
Sbjct: 243 NAARNFLVGGAEKDSDIIF 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231126|ref|NP_191432.1| V-type proton ATPase subunit D [Arabidopsis thaliana] gi|12643375|sp|Q9XGM1.2|VATD_ARATH RecName: Full=V-type proton ATPase subunit D; Short=V-ATPase subunit D; AltName: Full=Vacuolar H(+)-ATPase subunit D; AltName: Full=Vacuolar proton pump subunit D gi|16226831|gb|AAL16274.1|AF428344_1 AT3g58730/T20N10_80 [Arabidopsis thaliana] gi|7630068|emb|CAB88290.1| v-ATPase subunit D (vATPD) [Arabidopsis thaliana] gi|21700909|gb|AAM70578.1| AT3g58730/T20N10_80 [Arabidopsis thaliana] gi|110740940|dbj|BAE98565.1| vacuolar-type H+-ATPase (v-ATPase) subunit D [Arabidopsis thaliana] gi|332646303|gb|AEE79824.1| V-type proton ATPase subunit D [Arabidopsis thaliana]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/259 (79%), Positives = 234/259 (90%), Gaps = 1/259 (0%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            QN RL VVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFR +LK IVT KESMG++
Sbjct: 3   GQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDM 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
           MK SSFAL E KYVAG+N+KH+VLENV+ A++KVRSR ENIAGVK+PKF++F++GETKND
Sbjct: 63  MKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKND 122

Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           LTGLARGGQQV+ CR AYVKAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKP+L
Sbjct: 123 LTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKL 182

Query: 182 ENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISI 241
           ENTI+YIKGELDELEREDFFRLKKIQGYK+RE+ERQ A++K+F EE   E +S+Q+GISI
Sbjct: 183 ENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISI 242

Query: 242 KSAQNLLSAG-EKDEDIIF 259
            +A+N L  G EKD DIIF
Sbjct: 243 NAARNFLVGGAEKDSDIIF 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523277|ref|XP_003530267.1| PREDICTED: V-type proton ATPase subunit D-like isoform 1 [Glycine max] gi|356523279|ref|XP_003530268.1| PREDICTED: V-type proton ATPase subunit D-like isoform 2 [Glycine max]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/259 (80%), Positives = 231/259 (89%), Gaps = 4/259 (1%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            Q QRL VVPTVTMLGV+K+RLVGATRGHALLKKKSDALTVQFRQILK IV+TKESMG++
Sbjct: 3   GQTQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDI 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGE-TKN 120
           MK SSFAL EAKYVAG+NIKH+VLENV+ AS++VRSRQEN+AGVK+PKF+Y  D + TKN
Sbjct: 63  MKTSSFALTEAKYVAGDNIKHVVLENVKEASLRVRSRQENVAGVKLPKFDYTADADATKN 122

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           DLTGLARGGQQVQQCRAAY+KAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR
Sbjct: 123 DLTGLARGGQQVQQCRAAYIKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 182

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
           LENTI+YIKGELDELEREDFFRLKKIQGYKKREIERQ+    Q    +    + L+KG+S
Sbjct: 183 LENTISYIKGELDELEREDFFRLKKIQGYKKREIERQML---QQNNSKLDTNLPLRKGLS 239

Query: 241 IKSAQNLLSAGEKDEDIIF 259
             SA NLLS G+KDEDIIF
Sbjct: 240 YNSAHNLLSVGDKDEDIIF 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526264|ref|XP_003531738.1| PREDICTED: V-type proton ATPase subunit D-like [Glycine max]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/260 (80%), Positives = 231/260 (88%), Gaps = 6/260 (2%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
            Q QRL VVPTVTMLGV+K+RLVGATRGHALLKKKSDALTVQFRQILK IV+TKESMG++
Sbjct: 3   GQTQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDI 62

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGE-TKN 120
           MK SSFAL EAKYVAG+NIKH+VLENV+ AS++VRSRQEN+AGVK+PKF+Y  D + TKN
Sbjct: 63  MKTSSFALTEAKYVAGDNIKHVVLENVKEASLRVRSRQENVAGVKLPKFDYTADADATKN 122

Query: 121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
           DLTGLARGGQQVQQCRAAY+KAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR
Sbjct: 123 DLTGLARGGQQVQQCRAAYIKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 182

Query: 181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQ-LASSKQFVEEQFAEKVSLQKGI 239
           LENTI+YIKGELDELEREDFFRLKKIQGYKKREIERQ L  +   VE        L+KG+
Sbjct: 183 LENTISYIKGELDELEREDFFRLKKIQGYKKREIERQMLLQNNSNVETNLP----LRKGV 238

Query: 240 SIKSAQNLLSAGEKDEDIIF 259
           S  SA NLLS G+KDEDIIF
Sbjct: 239 SYNSAHNLLSVGDKDEDIIF 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2099074	261	AT3G58730 [Arabidopsis thalian	0.992	0.984	0.794	2.2e-105
DICTYBASE|DDB_G0274331	257	DDB_G0274331 "vacuolar ATP syn	0.976	0.984	0.501	1.4e-62
FB|FBgn0022097	246	Vha36-1 "Vacuolar H[+] ATPase	0.949	1.0	0.513	9e-61
UNIPROTKB|F1N270	247	ATP6V1D "V-type proton ATPase	0.949	0.995	0.517	1.2e-60
ZFIN|ZDB-GENE-040426-727	248	atp6v1d "ATPase, H+ transporti	0.953	0.995	0.501	1.2e-60
UNIPROTKB|F1SA40	247	ATP6V1D "Uncharacterized prote	0.949	0.995	0.513	1.5e-60
UNIPROTKB|Q9Y5K8	247	ATP6V1D "V-type proton ATPase	0.949	0.995	0.513	1.9e-60
FB|FBgn0040377	249	Vha36-3 "Vacuolar H[+] ATPase	0.961	1.0	0.509	2.4e-60
MGI|MGI:1921084	247	Atp6v1d "ATPase, H+ transporti	0.945	0.991	0.5	3.1e-60
UNIPROTKB|P39942	247	ATP6V1D "V-type proton ATPase	0.949	0.995	0.513	3.9e-60

TAIR|locus:2099074 AT3G58730 [Arabidopsis thaliana (taxid:3702)]

 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 205/258 (79%), Positives = 234/258 (90%)

Query:     3 QNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVM 62
             QN RL VVPTVTMLGVMK+RLVGATRGHALLKKKSDALTVQFR +LK IVT KESMG++M
Sbjct:     4 QNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDMM 63

Query:    63 KDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDL 122
             K SSFAL E KYVAG+N+KH+VLENV+ A++KVRSR ENIAGVK+PKF++F++GETKNDL
Sbjct:    64 KTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDL 123

Query:   123 TGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLE 182
             TGLARGGQQV+ CR AYVKAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKP+LE
Sbjct:   124 TGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKLE 183

Query:   183 NTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGISIK 242
             NTI+YIKGELDELEREDFFRLKKIQGYK+RE+ERQ A++K+F EE   E +S+Q+GISI 
Sbjct:   184 NTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISIN 243

Query:   243 SAQNLLSAG-EKDEDIIF 259
             +A+N L  G EKD DIIF
Sbjct:   244 AARNFLVGGAEKDSDIIF 261

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

DICTYBASE|DDB_G0274331 DDB_G0274331 "vacuolar ATP synthase subunit D" [Dictyostelium discoideum (taxid:44689)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 131/261 (50%), Positives = 185/261 (70%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   RL + PT   L VMK++L GA  GH+LLKKKSDALT++FR+IL NIV  K+ MG 
Sbjct:     1 MSGKNRLNIFPTRMALTVMKTKLKGAVTGHSLLKKKSDALTIRFRRILANIVENKQLMGT 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
              M+D+SF+L  AKY AGE   + V+ENV N +I V+   EN+AGV +P FE  ++G   N
Sbjct:    61 TMRDASFSLAAAKYAAGE-FSNSVIENVSNPTIAVKMTTENVAGVHLPTFEKISEGVVSN 119

Query:   121 --DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVK 178
               +LTGL++GGQQ+ + R +++KA+E L+ LASLQT+F+TLDE IK TNRRVNA+E VVK
Sbjct:   120 SQELTGLSKGGQQINKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVK 179

Query:   179 PRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKG 238
             P+LENTI+YI  ELDE ERE+F+RLKK+QG KK++++ + A      EE  A K  ++  
Sbjct:   180 PKLENTISYIITELDESEREEFYRLKKVQGKKKKDLKAKEAQK----EENSANKTIMEPA 235

Query:   239 ISIKSAQNLLSAGEKDEDIIF 259
              S+   ++L+    +D ++++
Sbjct:   236 -SVHKVRSLIDDEPEDAELLY 255

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISS

GO:0007035 "vacuolar acidification" evidence=ISS

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0022097 Vha36-1 "Vacuolar H[+] ATPase 36kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 133/259 (51%), Positives = 185/259 (71%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   RL + P+     +MK+RL GA +GH LLKKK+DAL ++FR IL  I+ TK  MG+
Sbjct:     1 MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VMK+++F+L EAK+ +G+ I  +VL+NV  A IK+R++++N+AGV +P FE + DG    
Sbjct:    61 VMKEAAFSLAEAKFTSGD-INQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +L GLARGGQQ+ + +  Y  A++LLVELASLQTSF+TLDE IK TNRRVNA+E+V+ PR
Sbjct:   120 ELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             ++ T+ YI  ELDELERE+F+RLKKIQ  KKRE  R  A +K+      AE   LQ+GI 
Sbjct:   180 IDRTLAYIISELDELEREEFYRLKKIQD-KKREA-RIKADAKK------AEL--LQQGID 229

Query:   241 IKSAQNLLSAGEKDEDIIF 259
             ++   N+L  G  D+D++F
Sbjct:   230 VRQQANILDEG--DDDVLF 246

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1N270 ATP6V1D "V-type proton ATPase subunit D" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 134/259 (51%), Positives = 188/259 (72%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct:     1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct:    61 VMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct:   120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +E T+ YI  ELDE ERE+F+RLKKIQ  +K++I ++  S K   + + A +V       
Sbjct:   180 IERTLAYIITELDEREREEFYRLKKIQ--EKKKILKE-KSDKDLEQRRAAGEV------- 229

Query:   241 IKSAQNLLSAGEKDEDIIF 259
             I+ A NLL A EKDED++F
Sbjct:   230 IEPA-NLL-AEEKDEDLLF 246

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

ZFIN|ZDB-GENE-040426-727 atp6v1d "ATPase, H+ transporting, V1 subunit D" [Danio rerio (taxid:7955)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 130/259 (50%), Positives = 188/259 (72%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+  +R+ + P+     +MK+RL GA  G +LLKKKSDAL+++FRQIL+ I+ TK  MGE
Sbjct:     1 MSGKERIDIFPSRMAQTIMKARLKGAQTGRSLLKKKSDALSMRFRQILRKIIETKTLMGE 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VM++++F+L EAK+ AG+     V++NV  A +KVR++++N+AGV +P FE++ +G    
Sbjct:    61 VMREAAFSLAEAKFAAGD-FSTTVIQNVNKAQVKVRAKKDNVAGVTLPVFEHYQEGGDSY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct:   120 ELTGLARGGEQLSRLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +E T+TYI  ELDE ERE+F+RLKKIQ  KK+  ER         E++ A++++    I+
Sbjct:   180 IERTLTYIITELDEREREEFYRLKKIQEKKKQLRER--------TEKEIAKRLAALGPIA 231

Query:   241 IKSAQNLLSAGEKDEDIIF 259
                  N+L+  E DED++F
Sbjct:   232 --EPTNMLTE-EADEDLLF 247

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

UNIPROTKB|F1SA40 ATP6V1D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 133/259 (51%), Positives = 191/259 (73%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct:     1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct:    61 VMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct:   120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +E T+ YI  ELDE ERE+F+RLKKIQ  +K++I ++   S++ +E++ A       G +
Sbjct:   180 IERTLAYIITELDEREREEFYRLKKIQ--EKKKILKE--KSEKDLEQRRAA------GEA 229

Query:   241 IKSAQNLLSAGEKDEDIIF 259
             ++ A NLL A EKDED++F
Sbjct:   230 MEPA-NLL-AEEKDEDLLF 246

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

UNIPROTKB|Q9Y5K8 ATP6V1D "V-type proton ATPase subunit D" [Homo sapiens (taxid:9606)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 133/259 (51%), Positives = 188/259 (72%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct:     1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct:    61 VMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct:   120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +E T+ YI  ELDE ERE+F+RLKKIQ  +K++I ++  S K   + + A +V       
Sbjct:   180 IERTLAYIITELDEREREEFYRLKKIQ--EKKKILKE-KSEKDLEQRRAAGEV------- 229

Query:   241 IKSAQNLLSAGEKDEDIIF 259
             ++ A NLL A EKDED++F
Sbjct:   230 LEPA-NLL-AEEKDEDLLF 246

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

FB|FBgn0040377 Vha36-3 "Vacuolar H[+] ATPase 36kD subunit 3" [Drosophila melanogaster (taxid:7227)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 132/259 (50%), Positives = 181/259 (69%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             MA   RL + P+     +MKSRL GAT+GH LLKKK+DAL ++FR IL  I+ TK  MG+
Sbjct:     1 MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VMK+++F+L E K+  G+ I  IVL+NV  A IK+R++++N+AGV +P FE +TDG    
Sbjct:    61 VMKEAAFSLAEVKFTTGD-INQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +L GLARGGQQ+ + +  Y  A+ LLV+LASLQTSF+TLD+ IK TNRRVNA+E+V+ PR
Sbjct:   120 ELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +  TI YI  ELDELERE+F+RLKKIQ  KKRE  +  AS K   E++   +++      
Sbjct:   180 INRTIEYIISELDELEREEFYRLKKIQD-KKREARK--ASDKLRAEQRLLGQMA-----E 231

Query:   241 IKSAQNLLSAGEKDEDIIF 259
              +  QN+L   + DED++F
Sbjct:   232 AQEVQNILDE-DGDEDLLF 249

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

MGI|MGI:1921084 Atp6v1d "ATPase, H+ transporting, lysosomal V1 subunit D" [Mus musculus (taxid:10090)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 130/260 (50%), Positives = 183/260 (70%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct:     1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct:    61 VMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR
Sbjct:   120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +E T+ YI  ELDE ERE+F+RLKKIQ  KK             ++E+F + +  ++   
Sbjct:   180 IERTLAYIITELDEREREEFYRLKKIQEKKK------------IIKEKFEKDLERRRAAG 227

Query:   241 -IKSAQNLLSAGEKDEDIIF 259
              +    NLL A EKDED++F
Sbjct:   228 EVMEPANLL-AEEKDEDLLF 246

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

UNIPROTKB|P39942 ATP6V1D "V-type proton ATPase subunit D" [Bos taurus (taxid:9913)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 133/259 (51%), Positives = 187/259 (72%)

Query:     1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGE 60
             M+   R+ + P+     +MK+RL GA  G  LLKKKSDALT++FRQILK I+ TK  MGE
Sbjct:     1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query:    61 VMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN 120
             VM++++F+L EAK+ AG+     V++NV  A +K+R++++N+AGV +P FE++ +G    
Sbjct:    61 VMREAAFSLAEAKFTAGD-FSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query:   121 DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 180
             +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVN +E+V+ PR
Sbjct:   120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNRIEHVIIPR 179

Query:   181 LENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS 240
             +E T+ YI  ELDE ERE+F+RLKKIQ  +K++I ++  S K   + + A +V       
Sbjct:   180 IERTLAYIITELDEREREEFYRLKKIQ--EKKKILKE-KSDKDLEQRRAAGEV------- 229

Query:   241 IKSAQNLLSAGEKDEDIIF 259
             I+ A NLL A EKDED++F
Sbjct:   230 IEPA-NLL-AEEKDEDLLF 246

GO:0015992 "proton transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1IWP5	VATD_DEIGD	No assigned EC number	0.3194	0.8146	0.9504	yes	no
P57746	VATD_MOUSE	No assigned EC number	0.4774	0.9227	0.9676	yes	no
Q61IU3	VATD_CAEBR	No assigned EC number	0.5560	0.8223	0.8223	N/A	no
Q8TUS9	VATD_METKA	No assigned EC number	0.3441	0.8030	0.8965	yes	no
Q9XGM1	VATD_ARATH	No assigned EC number	0.7915	0.9961	0.9885	yes	no
O59823	VATD_SCHPO	No assigned EC number	0.5047	0.8069	0.7333	yes	no
Q9V7D2	VATD1_DROME	No assigned EC number	0.5135	0.9498	1.0	yes	no
A0PZC8	VATD_CLONN	No assigned EC number	0.3037	0.8030	0.9629	yes	no
Q86A77	VATD_DICDI	No assigned EC number	0.5707	0.7799	0.7859	yes	no
P34462	VATD_CAEEL	No assigned EC number	0.4921	0.9613	0.9688	yes	no
O97755	VATD_RABIT	No assigned EC number	0.5096	0.9498	0.9959	yes	no
P39942	VATD_BOVIN	No assigned EC number	0.5173	0.9498	0.9959	yes	no
P32610	VATD_YEAST	No assigned EC number	0.5619	0.7992	0.8085	yes	no
Q5RCS8	VATD_PONAB	No assigned EC number	0.5135	0.9498	0.9959	yes	no
Q9Y5K8	VATD_HUMAN	No assigned EC number	0.5135	0.9498	0.9959	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam01813	191	pfam01813, ATP-synt_D, ATP synthase subunit D	5e-68
TIGR00309	209	TIGR00309, V_ATPase_subD, H(+)-transporting ATP sy	3e-53
COG1394	211	COG1394, NtpD, Archaeal/vacuolar-type H+-ATPase su	1e-48
PRK00373	204	PRK00373, PRK00373, V-type ATP synthase subunit D;	5e-37

>gnl|CDD|201987 pfam01813, ATP-synt_D, ATP synthase subunit D

 Score =  208 bits (531), Expect = 5e-68
 Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 2/193 (1%)

Query: 15  MLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKY 74
            L  +K RL  A RGH LLKKK DAL  +FR +L+     +E + E +K++ F+L  A  
Sbjct: 1   ELIRLKRRLKLAQRGHKLLKKKRDALIREFRALLREAKELREELEEALKEAYFSLALANA 60

Query: 75  VAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQ 134
             G +    V E+V+   ++V+    NI GVK+P FE     ET     GL      + +
Sbjct: 61  AEGIDFVESVAESVKR-VVEVKVSTRNIMGVKVPVFELVEV-ETAERPYGLLSTSAWLDE 118

Query: 135 CRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDE 194
            R  + +A+ELL+ELA L+T+   L E I+ T RRVNALE VV PRLE TI YI+ EL+E
Sbjct: 119 AREKFEEALELLIELAELETALRLLAEEIRKTQRRVNALEKVVIPRLEETIKYIRMELEE 178

Query: 195 LEREDFFRLKKIQ 207
            ERE+FFRLKKI+
Sbjct: 179 REREEFFRLKKIK 191

This is a family of subunit D form various ATP synthases including V-type H+ transporting and Na+ dependent. Subunit D is suggested to be an integral part of the catalytic sector of the V-ATPase. Length = 191

>gnl|CDD|129409 TIGR00309, V_ATPase_subD, H(+)-transporting ATP synthase, vacuolar type, subunit D

 Score =  171 bits (435), Expect = 3e-53
 Identities = 86/206 (41%), Positives = 123/206 (59%), Gaps = 1/206 (0%)

Query: 9   VVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFA 68
           V PT   L  +K +L  A RG++LLK K DAL ++FRQIL+     K  M + +K++   
Sbjct: 4   VNPTRMELLKLKDKLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISD 63

Query: 69  LIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFE-YFTDGETKNDLTGLAR 127
           LIEA+ V G     I   +V  A  +V  + +NI GV +P F+ Y    +      GL  
Sbjct: 64  LIEAQSVMGPFAVWIAALSVVTARFEVDMKSKNIMGVVVPVFDSYEIRRKVHERGYGLLF 123

Query: 128 GGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITY 187
              +V +    Y +A+EL+VELA ++T+   L E I+ T RRVNALE+V+ PRL+NTI Y
Sbjct: 124 TSYKVDEAAEIYEEAVELIVELAEIETTIRLLAEEIEITKRRVNALEHVIIPRLKNTIKY 183

Query: 188 IKGELDELEREDFFRLKKIQGYKKRE 213
           I   LDE++RE+F RLKKI+  K++E
Sbjct: 184 INMRLDEMDRENFVRLKKIKSSKEKE 209

Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote [Transport and binding proteins, Cations and iron carrying compounds]. Length = 209

>gnl|CDD|224312 COG1394, NtpD, Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]

 Score =  159 bits (404), Expect = 1e-48
 Identities = 80/209 (38%), Positives = 115/209 (55%), Gaps = 2/209 (0%)

Query: 5   QRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKD 64
             L V PT   L  +K RL  A RGH LLK K DAL ++FR I+K     +E + + +++
Sbjct: 1   MSLQVKPTRMELIRLKRRLKLARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEE 60

Query: 65  SSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTG 124
           +  +L  A    G +     +  VQ   ++V    ENI GV +P FE   +        G
Sbjct: 61  AYESLALASAAEGIDAVE-EIALVQKEKLEVDVDVENIMGVVVPTFE-LVELTPPPYDLG 118

Query: 125 LARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENT 184
           +      + +    + + +E L+ELA L+T+   L E I+ T RRVNALE V+ PRLENT
Sbjct: 119 ILSTSAWLDEAIEKFEELLEKLIELAELETTLRLLLEEIRKTKRRVNALEYVIIPRLENT 178

Query: 185 ITYIKGELDELEREDFFRLKKIQGYKKRE 213
           I YI+ +L+E EREDF RLKKI+  K+ +
Sbjct: 179 IKYIESKLEEREREDFVRLKKIKKKKEAK 207

Length = 211

>gnl|CDD|178991 PRK00373, PRK00373, V-type ATP synthase subunit D; Reviewed

 Score =  129 bits (326), Expect = 5e-37
 Identities = 72/202 (35%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 6   RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDS 65
           RL V PT   L  +K RL  A RGH LLK K D L ++F  IL      +E + E ++++
Sbjct: 3   RLNVKPTRMELINLKRRLKLAERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEA 62

Query: 66  SFALIEAKYVAG-ENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTG 124
               + A+ V G   ++       ++  + V S+  NI GV +P  E            G
Sbjct: 63  YKDFLMARAVEGSLAVEEAAASPKESLEVDVSSK--NIMGVVVPVIELSVKRTLPERGYG 120

Query: 125 LARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENT 184
                 ++ +    + + +E ++ELA ++ +   L + I+ T RRVNALE V+ PRLE T
Sbjct: 121 FLGTSAELDEAAEKFEELLEKILELAEVEKTIQLLADEIEKTKRRVNALEYVIIPRLEET 180

Query: 185 ITYIKGELDELEREDFFRLKKI 206
           I YIK +LDE+ERE+F RLKKI
Sbjct: 181 IKYIKMKLDEMERENFVRLKKI 202

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG1647	255	consensus Vacuolar H+-ATPase V1 sector, subunit D	100.0
TIGR00309	209	V_ATPase_subD H(+)-transporting ATP synthase, vacu	100.0
PRK00373	204	V-type ATP synthase subunit D; Reviewed	100.0
COG1394	211	NtpD Archaeal/vacuolar-type H+-ATPase subunit D [E	100.0
PRK02195	201	V-type ATP synthase subunit D; Provisional	100.0
PF01813	196	ATP-synt_D: ATP synthase subunit D ; InterPro: IPR	100.0

>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]

Probab=100.00  E-value=6.7e-66  Score=445.20  Aligned_cols=254  Identities=58%  Similarity=0.861  Sum_probs=225.1

Q ss_pred             CcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcch
Q 025029            1 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENI   80 (259)
Q Consensus         1 m~~~~~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~   80 (259)
                      ||+++|++|+||||+|..||.|+++|++||.|||+|+|||.++||.+++.+.+.+..|++.|++|.|||++|.|.+|+ |
T Consensus         1 Msg~dr~~vFPtRm~~~~MKtrlkgAq~GhsLLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn-~   79 (255)
T KOG1647|consen    1 MSGKDRLPVFPTRMNLTLMKTRLKGAQKGHSLLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGN-F   79 (255)
T ss_pred             CCccccccccchHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-c
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999885 9


Q ss_pred             HHHHHhhcccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029           81 KHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLD  160 (259)
Q Consensus        81 ~~~v~~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~  160 (259)
                      ...+.+++..+.++|+.+.+||+||.+|+|+....+...++..||+.||+++.+|++.|.+++++|++||++|++|..|+
T Consensus        80 ~~~v~q~v~~a~v~vRsk~env~GV~Lp~fe~~~dg~~~~~LtgL~rgGqqv~~~r~~Y~kAve~LVelasLqtsf~~Ld  159 (255)
T KOG1647|consen   80 KHQVQQNVKQATVKVRSKKENVSGVKLPTFELYQDGIDAFPLTGLGRGGQQVARLRENYTKAVELLVELASLQTSFRTLD  159 (255)
T ss_pred             cHHHHhhhhhheeeeeeeccccceeeechhhhhcccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999889999999999999999999999887666668999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHhhhhccc
Q 025029          161 EAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFAEKVSLQKGIS  240 (259)
Q Consensus       161 ~eIkkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                      +.|+.||||||||||||||++++||.||.++|||.|||||||||||+.+|....++..++.+.   +...++...+.+..
T Consensus       160 e~ik~TNrRVNAiEhvIIPrlenTi~YI~sELdE~eRedF~RLKKiQ~~K~~~~ek~~a~k~~---e~~~~~~~~~~~~~  236 (255)
T KOG1647|consen  160 EAIKVTNRRVNAIEHVIIPRLENTIAYIVSELDELEREDFYRLKKIQAKKREAKEKADAEKKL---EDEGLGIDVQRNIN  236 (255)
T ss_pred             HHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh---hccccchHHHhhcc
Confidence            999999999999999999999999999999999999999999999999998876666543221   11111122233333


Q ss_pred             ccccccccccCC-CCCCCCC
Q 025029          241 IKSAQNLLSAGE-KDEDIIF  259 (259)
Q Consensus       241 ~~~~~~~~~~~~-~d~d~~f  259 (259)
                      . .++|++.++. .|+|++|
T Consensus       237 ~-~~an~~~~e~~~~~d~lf  255 (255)
T KOG1647|consen  237 V-PAANLLAGEEQMDDDVLF  255 (255)
T ss_pred             c-cccccccccccccccccC
Confidence            3 3556665222 2899998

>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D

Probab=100.00  E-value=6.5e-59  Score=408.13  Aligned_cols=205  Identities=41%  Similarity=0.547  Sum_probs=191.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHHh
Q 025029            7 LTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLE   86 (259)
Q Consensus         7 ~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~~   86 (259)
                      .+|+||||+|+.+|++|++|++||+||++|||+|+++|++++.++.+++..+++.+.+||+++..|.+..|+.....++.
T Consensus         2 ~~v~PTr~~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~   81 (209)
T TIGR00309         2 EKVNPTRMELLKLKDKLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAAL   81 (209)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999855566777


Q ss_pred             hcccCceEEEeeeeeeeeeeeceeeeeecCC-CCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029           87 NVQNASIKVRSRQENIAGVKIPKFEYFTDGE-TKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKT  165 (259)
Q Consensus        87 ~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~-~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkk  165 (259)
                      +++.+..+|.++.+|||||++|.|+..+... .+.++||+++||+|+|+|+..|.++++.++++|++|++|++|+.||++
T Consensus        82 ~v~~~~~~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~l~~t~~~~d~a~~~~~~~l~~li~lA~~e~~~~~L~~eI~~  161 (209)
T TIGR00309        82 SVVTARFEVDMKSKNIMGVVVPVFDSYEIRRKVHERGYGLLFTSYKVDEAAEIYEEAVELIVELAEIETTIRLLAEEIEI  161 (209)
T ss_pred             cCCcccceEEEEEEEEeeEEcceeEeeccccCccccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765788999999999999999999964322 234779999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhH
Q 025029          166 TNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKK  211 (259)
Q Consensus       166 T~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~  211 (259)
                      |+|||||||||+||++++||+||.++|||+|||+|||+|++|++++
T Consensus       162 T~RRVNALE~vvIP~l~~~ik~I~~~LeE~EREef~RlK~vK~k~~  207 (209)
T TIGR00309       162 TKRRVNALEHVIIPRLKNTIKYINMRLDEMDRENFVRLKKIKSSKE  207 (209)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998875

Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.

>PRK00373 V-type ATP synthase subunit D; Reviewed

Probab=100.00  E-value=3.5e-58  Score=402.13  Aligned_cols=202  Identities=36%  Similarity=0.501  Sum_probs=187.1

Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHH
Q 025029            5 QRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIV   84 (259)
Q Consensus         5 ~~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v   84 (259)
                      ++.+|+||||+|+.+|++|++|++||+|||+|||+|+++|+++++++.++++.+++.+++||++|+.|.+..|+.+...+
T Consensus         2 ~~~~v~pTr~~L~~lk~~l~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~~   81 (204)
T PRK00373          2 ARLNVKPTRMELINLKRRLKLAERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEEA   81 (204)
T ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999998665666


Q ss_pred             HhhcccCceEEEeeeeeeeeeeeceeeee-ecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029           85 LENVQNASIKVRSRQENIAGVKIPKFEYF-TDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAI  163 (259)
Q Consensus        85 ~~~v~~~~~~v~~~~~nImGV~vP~~~~~-~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eI  163 (259)
                      ..+ ..+..+|.++.+|||||++|.|+.. ... ....+||+++||+|+|+|+..|.++++.++++|++|++|++|+.||
T Consensus        82 ~~~-~~~~~~v~~~~~ni~GV~vP~~~~~~~~~-~~~~~y~~~~t~~~~d~a~~~~~~~l~~li~lA~~e~~~~~L~~ei  159 (204)
T PRK00373         82 AAS-PKESLEVDVSSKNIMGVVVPVIELSVKRT-LPERGYGFLGTSAELDEAAEKFEELLEKILELAEVEKTIQLLADEI  159 (204)
T ss_pred             HhC-CCCCceEEEEeEEEEEEEeceEEeecccC-CccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555 3567889999999999999999983 221 1236799999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhh
Q 025029          164 KTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQG  208 (259)
Q Consensus       164 kkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~  208 (259)
                      ++|+|||||||||+||++++||+||.++|||+|||+|||+|++|+
T Consensus       160 ~kT~RRVNALE~vvIP~le~~ik~I~~~LeE~EReef~RlK~iK~  204 (204)
T PRK00373        160 EKTKRRVNALEYVIIPRLEETIKYIKMKLDEMERENFVRLKKIKS  204 (204)
T ss_pred             HHHHHHHHHhhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999984

>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]

Probab=100.00  E-value=6.7e-58  Score=399.47  Aligned_cols=207  Identities=38%  Similarity=0.501  Sum_probs=191.0

Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHH
Q 025029            5 QRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIV   84 (259)
Q Consensus         5 ~~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v   84 (259)
                      ++.+|+||||+|+++|++|++|++||+|||+|||+|++||+++.+++.+++..+++.+.+||+++..|.+..|.+....+
T Consensus         1 m~~~v~PTR~eL~~lk~rLkla~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~~   80 (211)
T COG1394           1 MSLQVKPTRMELIRLKRRLKLARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEEI   80 (211)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999998666667


Q ss_pred             HhhcccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029           85 LENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIK  164 (259)
Q Consensus        85 ~~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIk  164 (259)
                      +...+ ..++|.+..+|||||.+|.|+.......++. .|+++||+|+|+|+..|.++++.++++|++|++|++|.+||+
T Consensus        81 ~~~~~-~~~~v~~~~~nI~GV~vP~~~~~~~~~~~~~-~~~~~t~~~ld~a~~~~~elle~li~lae~e~~~~~L~~Ei~  158 (211)
T COG1394          81 ALVQK-EKLEVDVDVENIMGVVVPTFELVELTPPPYD-LGILSTSAWLDEAIEKFEELLEKLIELAELETTLRLLLEEIR  158 (211)
T ss_pred             HhCCC-CCceeeeceeeeeeeeeeeeeeeccCCCccc-ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65544 7889999999999999999998765543322 226999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHHH
Q 025029          165 TTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKRE  213 (259)
Q Consensus       165 kT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~~  213 (259)
                      +|+||||||||++||++++||+||.++|||+|||+|||+|++|++++..
T Consensus       159 ~T~RRVNalE~~iIP~l~~tikyI~~~LeE~eRe~f~RlK~iK~~~e~~  207 (211)
T COG1394         159 KTKRRVNALEYVIIPRLENTIKYIESKLEEREREDFVRLKKIKKKKEAK  207 (211)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997754

>PRK02195 V-type ATP synthase subunit D; Provisional

Probab=100.00  E-value=1.9e-55  Score=384.07  Aligned_cols=197  Identities=21%  Similarity=0.161  Sum_probs=183.5

Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHH
Q 025029            6 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVL   85 (259)
Q Consensus         6 ~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~   85 (259)
                      ..+|.|||++|+++|++|++|++||+||++|||+|++||++++.++.++++.+++.+.+||.++..|....|..     .
T Consensus         2 ~~~v~pTK~eL~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~-----~   76 (201)
T PRK02195          2 MSKIKLTKNSLKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFD-----E   76 (201)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----h
Confidence            45789999999999999999999999999999999999999999999999999999999999999999988873     2


Q ss_pred             hhcccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029           86 ENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKT  165 (259)
Q Consensus        86 ~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkk  165 (259)
                      .+++  ...|.++.+|||||+||.|+....+   ..+||+++||+|+|+|+..|.++++.++++|++|+++++|+.||++
T Consensus        77 ~~~~--~~~v~~~~~nimGV~vP~~~~~~~~---~~~Y~~~~t~~~lD~a~~~~~~ll~~~i~lAe~E~~l~~L~~ei~k  151 (201)
T PRK02195         77 DLIK--VKKVEKDYENIAGVEVPILDSIEFE---IIEYSLLNTPIWVDTGIELLKELVQLKIEAEVLQERLLLLEEELRK  151 (201)
T ss_pred             hcCC--cceEEEeeeeEeeeeeceeeeeecC---CCCcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333  5577888899999999999996652   3679999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHH
Q 025029          166 TNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR  212 (259)
Q Consensus       166 T~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~  212 (259)
                      |+|||||||||+||++++||+||+++|||+|||+|||+|++|+++.+
T Consensus       152 T~rRVNalE~v~IP~~~~~ik~I~~~LeE~ERe~~~RlK~iK~~~~~  198 (201)
T PRK02195        152 TTQRVNLFEKVLIPETKANIKKIKIFLGDQETAAVVRQKIAKKKIEK  198 (201)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988764

>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=1.2e-54  Score=377.28  Aligned_cols=195  Identities=42%  Similarity=0.607  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHHhhcccCce
Q 025029           14 TMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASI   93 (259)
Q Consensus        14 ~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~~~v~~~~~   93 (259)
                      |+|+++|+++++|++||+||++|||+|+++|+++++++.++++.+++.+++||++|..|.+..|.++...++++++ ...
T Consensus         1 m~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~~-~~~   79 (196)
T PF01813_consen    1 MELIRLKRRLKLAKRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSSVAESVP-ESV   79 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHTS-S----
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHhcCC-CCc
Confidence            7999999999999999999999999999999999999999999999999999999999999889878788887775 377


Q ss_pred             EEEeeeeeeeeeeeceeeeeecC-CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025029           94 KVRSRQENIAGVKIPKFEYFTDG-ETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNA  172 (259)
Q Consensus        94 ~v~~~~~nImGV~vP~~~~~~~~-~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~RRVNA  172 (259)
                      +|.++.+|||||++|.|+..... ..+.++||+++||+|+|+|+..|.++++.++++|++|++|++|+.||++|+|||||
T Consensus        80 ~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~~~~~~~~~d~a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~RRVNA  159 (196)
T PF01813_consen   80 EVEVKERNIMGVRVPVLEVKEVRRPFPSPPYGLLGTPPWLDEAREKFEELLELLIELAELETALRRLAEEIRKTQRRVNA  159 (196)
T ss_dssp             EEEEEEEEETTEEEEEEEEE--GGTTS------TT--HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred             EEEEEEEEEEEEEeceEEeeecccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999987721 22348899999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhh
Q 025029          173 LENVVKPRLENTITYIKGELDELEREDFFRLKKIQGY  209 (259)
Q Consensus       173 LE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~k  209 (259)
                      ||||+||++++||+||.++|||+|||||||+|++|+|
T Consensus       160 LE~vlIP~l~~tik~I~~~LeE~EREef~RlK~iK~K  196 (196)
T PF01813_consen  160 LEKVLIPRLEETIKYIRSELEEREREEFFRLKKIKKK  196 (196)
T ss_dssp             HHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999976

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
3vr6_G	217	Crystal Structure Of Amp-pnp Bound Enterococcus Hir		1e-16
3aon_A	217	Crystal Structure Of The Central Axis (Ntpd-Ntpg) I		2e-16
3a5c_G	223	Inter-Subunit Interaction And Quaternary Rearrangem		4e-15

>pdb|3VR6|G Chain G, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 217

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 7/207 (3%)
Query: 6   RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDS 65
           RL V PT   L  +K +L  ATRGH LLK K D L  QF  +++     ++++ +  + +
Sbjct: 9   RLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTA 68
Query: 66  SFALIEAKYVAGEN-IKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLT- 123
               + AK    E  I  ++    +N SI V  +  NI  VK+P   +  D ET N+   
Sbjct: 69  MKDFVLAKSTVEEAFIDELLALPAENVSISVVEK--NIMSVKVPLMNFQYD-ETLNETPL 125
Query: 124 --GLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
             G      ++ +    + + +  L++LA ++ +   + E I+ T RRVNALE +  P+L
Sbjct: 126 EYGYLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTRRRVNALEYMTIPQL 185
Query: 182 ENTITYIKGELDELEREDFFRLKKIQG 208
           E TI YIK +L+E ER +  RL K++ 
Sbjct: 186 EETIYYIKMKLEENERAEVTRLIKVKN 212

>pdb|3AON|A Chain A, Crystal Structure Of The Central Axis (Ntpd-Ntpg) In The Catalytic Portion Of Enterococcus Hirae V-Type Sodium Atpase Length = 217

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 6   RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDS 65
           RL V PT   L  +K +L  ATRGH LLK K D L  QF  +++     ++++ +  + +
Sbjct: 9   RLNVNPTRXELTRLKKQLTTATRGHKLLKDKQDELXRQFILLIRKNNELRQAIEKETQTA 68
Query: 66  SFALIEAKYVAGEN-IKHIVLENVQNASIKVRSRQENIAGVKIP--KFEYFTDGETKNDL 122
               + AK    E  I  ++    +N SI V  +  NI  VK+P   F+Y    ET N+ 
Sbjct: 69  XKDFVLAKSTVEEAFIDELLALPAENVSISVVEK--NIXSVKVPLXNFQY---DETLNET 123
Query: 123 T---GLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 179
               G      ++ +    + + +  L++LA ++ +     E I+ T RRVNALE    P
Sbjct: 124 PLEYGYLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLXAEEIEKTRRRVNALEYXTIP 183
Query: 180 RLENTITYIKGELDELEREDFFRLKKIQG 208
           +LE TI YIK +L+E ER +  RL K++ 
Sbjct: 184 QLEETIYYIKXKLEENERAEVTRLIKVKN 212

>pdb|3A5C|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 223

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 18/207 (8%)
Query: 9   VVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFA 68
           V PT   L   + +L  A +G  LLKKK DAL  +F  +++  +  ++++ +  K++  A
Sbjct: 4   VSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAA 63
Query: 69  LIE------AKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEY-FTDGETKND 121
           L+        + VAG  +    LE V+       +  EN+ G K+P+ +  F DG     
Sbjct: 64  LLLAQAFDGPEVVAGAALGVPPLEGVE-------AEVENVWGSKVPRLKATFPDGAL--- 113
Query: 122 LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 181
           L+ +      ++  RA + +  E L+ +A+ +T    + E IK T RRVNALE VV P +
Sbjct: 114 LSPVGTPAYTLEASRA-FRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGI 172
Query: 182 ENTITYIKGELDELEREDFFRLKKIQG 208
              I +I+  L++ ERED FRLK+I+G
Sbjct: 173 RAQIRFIQQVLEQREREDTFRLKRIKG 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
3aon_A	217	V-type sodium ATPase subunit D; V-ATPase, coiled-c	5e-62
3a5c_G	223	V-type ATP synthase subunit D; V-ATPase, asymmetri	3e-54
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Length = 217

 Score =  193 bits (491), Expect = 5e-62
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 3/214 (1%)

Query: 2   AQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEV 61
           +   RL V PT   L  +K +L  ATRGH LLK K D L  QF  +++     ++++ + 
Sbjct: 5   SSGMRLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKE 64

Query: 62  MKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND 121
            + +    + AK    E      L  +   ++ +   ++NI  VK+P   +  D      
Sbjct: 65  TQTAMKDFVLAKSTVEEAFIDE-LLALPAENVSISVVEKNIMSVKVPLMNFQYDETLNET 123

Query: 122 --LTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 179
               G      ++ +    + + +  L++LA ++ +   + E I+ T RRVNALE +  P
Sbjct: 124 PLEYGYLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTRRRVNALEYMTIP 183

Query: 180 RLENTITYIKGELDELEREDFFRLKKIQGYKKRE 213
           +LE TI YIK +L+E ER +  RL K++     E
Sbjct: 184 QLEETIYYIKMKLEENERAEVTRLIKVKNMGTEE 217

>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G* Length = 223

 Score =  173 bits (440), Expect = 3e-54
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 4/222 (1%)

Query: 9   VVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFA 68
           V PT   L   + +L  A +G  LLKKK DAL  +F  +++  +  ++++ +  K++  A
Sbjct: 4   VSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAA 63

Query: 69  LIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARG 128
           L+ A+   G  +       V      V +  EN+ G K+P+ +            G    
Sbjct: 64  LLLAQAFDGPEVVAGAALGVPPL-EGVEAEVENVWGSKVPRLKATFPDGALLSPVGT--- 119

Query: 129 GQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYI 188
                +   A+ +  E L+ +A+ +T    + E IK T RRVNALE VV P +   I +I
Sbjct: 120 PAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFI 179

Query: 189 KGELDELEREDFFRLKKIQGYKKREIERQLASSKQFVEEQFA 230
           +  L++ ERED FRLK+I+G  +     +         E  A
Sbjct: 180 QQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGA 221

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 43/309 (13%), Positives = 89/309 (28%), Gaps = 88/309 (28%)

Query: 5   QRLTVVPTVT---MLGVMKSRLVGAT-RGHALLKKKSDA---LTV-------QFRQILKN 50
             L     V    +LG  K+ +       + +  K       L +          ++L+ 
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 51  IVTTKESMGEVMKDSSFALIEAKYVAGENIKH-----------IVLENVQNASI------ 93
           ++   +       D S  +    +     ++            +VL NVQNA        
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 94  --K--VRSRQENIA------GVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVK-A 142
             K  + +R + +              ++ +   T +++  L             Y+   
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----------LKYLDCR 314

Query: 143 IELLVELASLQTSFLTLD---EAIKTTNRRVNALENVVKPRLENTITYIKGELDELERED 199
            + L     L T+   L    E+I+      +  ++V   +L      I+  L+ LE  +
Sbjct: 315 PQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---IESSLNVLEPAE 370

Query: 200 FFRLKKIQGYKK----RE---IERQL-----ASSKQFVEEQFAEKVSLQKGISIKSAQNL 247
           + ++     + +         I   L         +        K  L K     S   L
Sbjct: 371 YRKM-----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHK----YS---L 416

Query: 248 LSAGEKDED 256
           +   EK   
Sbjct: 417 V---EKQPK 422

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3aon_A	217	V-type sodium ATPase subunit D; V-ATPase, coiled-c	100.0
3a5c_G	223	V-type ATP synthase subunit D; V-ATPase, asymmetri	100.0

>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=100.00  E-value=6.4e-62  Score=428.17  Aligned_cols=206  Identities=29%  Similarity=0.407  Sum_probs=173.5

Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHH
Q 025029            6 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVL   85 (259)
Q Consensus         6 ~~~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~   85 (259)
                      ..+|+||||+|+.+|++|++|++||+|||+|||+|+++|+++++++.++++.+++.+++||++|+.|.+.+|+.+...++
T Consensus         9 ~~~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~   88 (217)
T 3aon_A            9 RLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDELL   88 (217)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999975566676


Q ss_pred             hhcccCceEEEeeeeeeeeeeeceeeeeecC--CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025029           86 ENVQNASIKVRSRQENIAGVKIPKFEYFTDG--ETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAI  163 (259)
Q Consensus        86 ~~v~~~~~~v~~~~~nImGV~vP~~~~~~~~--~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eI  163 (259)
                      .+++ ...+|.++.+|||||+||+|++....  .....+||+++||+|+|+|+..|.+++++++++|++|++|++|++||
T Consensus        89 ~~~~-~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~~ygl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eI  167 (217)
T 3aon_A           89 ALPA-ENVSISVVEKNIMSVKVPLMNFQYDETLNETPLEYGYLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEEI  167 (217)
T ss_dssp             TSCS-CCCEEEEEEEEETTEEEEEEEEECCGGGTTSCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCC-CceEEEEEEEEEEEEEeceEEEEecccccCCcCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6664 57899999999999999999987421  12226699999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHH
Q 025029          164 KTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR  212 (259)
Q Consensus       164 kkT~RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~  212 (259)
                      ++|+|||||||||+||++++||+||.++|||+|||+|||||+||+++++
T Consensus       168 kkT~RRVNALE~viIP~~e~tikyI~~~LdE~EReef~RlKkiK~~~~~  216 (217)
T 3aon_A          168 EKTRRRVNALEYMTIPQLEETIYYIKMKLEENERAEVTRLIKVKNMGTE  216 (217)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             HHHhHHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999998763

>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*

Probab=100.00  E-value=7.2e-61  Score=423.01  Aligned_cols=201  Identities=30%  Similarity=0.404  Sum_probs=123.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhCcchHHHHHhh
Q 025029            8 TVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGEVMKDSSFALIEAKYVAGENIKHIVLEN   87 (259)
Q Consensus         8 ~v~PTR~~L~~lK~rL~~A~rG~~LLk~KrdaL~~ef~~i~~~~~~~r~~~~~~~~~A~~~L~~A~~~~G~~~~~~v~~~   87 (259)
                      +|+||||+|+.+|++|++|++||+|||+|||+|+++|+++++++.+++..+++.+++||++|+.|.+.+|+.+...++.+
T Consensus         3 ~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~   82 (223)
T 3a5c_G            3 QVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALG   82 (223)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999997666667656


Q ss_pred             cccCceEEEeeeeeeeeeeeceeeeeecCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025029           88 VQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTN  167 (259)
Q Consensus        88 v~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~gl~~t~~~id~a~~~~~~~l~~lielA~le~~~~~L~~eIkkT~  167 (259)
                      ++ ...+|.++.+|||||+||+|++....   ..+||+++||+|+|+|+..|.+++++++++|++|++|++|++||++|+
T Consensus        83 ~~-~~~~v~~~~~nImGV~vP~~~~~~~~---~~~ygl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~  158 (223)
T 3a5c_G           83 VP-PLEGVEAEVENVWGSKVPRLKATFPD---GALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTT  158 (223)
T ss_dssp             -----------------------------------------------------CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred             CC-CCeEEEEEEEEEEEEEeceEEeccCC---CCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            64 46789999999999999999987221   256999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccCCchhHHHHHHhhhchhHHHHHHHHHHHhhhhHH
Q 025029          168 RRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR  212 (259)
Q Consensus       168 RRVNALE~vvIP~le~tIkyI~~~LeE~EREef~RlKkiK~kk~~  212 (259)
                      |||||||||+||++++||+||.++|||+|||+|||||++|+++++
T Consensus       159 RRVNALE~viIP~le~tikyI~~~LdE~EReef~RlKkiK~k~~~  203 (223)
T 3a5c_G          159 RRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEA  203 (223)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00