Citrus Sinensis ID: 025031

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MESSSKSNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKFPKDVNRDTFMS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEEEEEEccccccccccccccccHHEcccHHHHccccccEEEEEEEccEEEEEEEEEEEEccccEEEEcHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccHcccccccccccEEEEEEEEccccccEEEEEEcHHHHcccccEEEccccccccccccHHHHHHHHHHHHHcccHccEEEEEEcccccccccEEEEEEEEEEccccccEccccHHHHHHHHcccHHHHcccccccEEEEEEcccEEEEEEEEcccccccEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MESSSKSNIQRLIVIAQHLrdykgppstydQMEQKIRETSGKVTSLvgsqesasptvryaktfrpkKAAVLVCLFEGDNGELRVILTKRASrlsthsgevslpggkaeegdeddgetATREAKeeigldpslvdVVTVIEPFLSKYLLRVVPVIGilhnrkafkptpnpgeveevfdaplEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASvvyqkppafeegnpkfkfpkdvnrdtfms
Flexible Loop (DISEMBL)
MESSSKSNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSgkvtslvgsqesasptvryaktfrpKKAAVLVCLFEGDNGELRVILTKrasrlsthsgevslpggkaeegdeddgETATREakeeigldpslvdVVTVIEPFLSKYLLRVVPVIGILHnrkafkptpnpgeVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQkppafeegnpkfkfpkdvnrdtfms
Low Complexity Region (SEG)
MESSSKSNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPggkaeegdeddgeTATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKFPKDVNRDTFMS
Disordered region (IsUnstruct)
**********RLIVIAQHLR*************************************RYAKTFRPKKAAVLVCLFEGDNGELRVILTK***************************************LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFK*********EVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQK************************
Disordered Region (DISOPRED)
*****************HLRDYKGPPSTYDQMEQKIRE************************FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKFPKDV*******
Disordered Region (DISEMBL)
********IQRLIVIAQHLRDYKGPPSTYDQMEQKIRE******************VRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASR******************************KEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKFPKDVNRDTFMS
Disordered Region (DISPRO)
********IQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGK********ESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKFPK*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESSSKSNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKFPKDVNRDTFMS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q8GYB1	285	Nudix hydrolase 15, mitoc	yes	no	0.926	0.842	0.703	2e-97
O22951	302	Nudix hydrolase 22, chlor	no	no	0.907	0.778	0.662	3e-88
Q8LET2	222	Nudix hydrolase 11 OS=Ara	no	no	0.710	0.828	0.597	5e-62
Q99P30	236	Peroxisomal coenzyme A di	yes	no	0.660	0.724	0.376	5e-24
P0C024	238	Peroxisomal coenzyme A di	yes	no	0.610	0.663	0.371	3e-23
Q6D4L1	192	Uncharacterized Nudix hyd	yes	no	0.602	0.812	0.331	1e-17
Q12524	340	Peroxisomal coenzyme A di	yes	no	0.718	0.547	0.289	6e-16
Q7N3M0	187	Uncharacterized Nudix hyd	yes	no	0.613	0.850	0.311	2e-15
A7MKE8	192	Uncharacterized Nudix hyd	yes	no	0.598	0.807	0.329	4e-15
B5FTK8	192	Uncharacterized Nudix hyd	yes	no	0.648	0.875	0.318	2e-14

>sp|Q8GYB1|NUD15_ARATH Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2

 Score =  355 bits (911), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 202/243 (83%), Gaps = 3/243 (1%)

Query: 11  RLIVIAQHLRDYKGPPST-YDQME--QKIRETSGKVTSLVGSQESASPTVRYAKTFRPKK 67
           RL  +AQ LR YK PPS+ +D  E  Q  +ET+GKV S VG QES +P  +    F+PK+
Sbjct: 42  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 101

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           AAVL+CLFEGD+G+LRVILTKR+S+LSTHSGEVSLPGGKAEE D+DDG TATREA+EEIG
Sbjct: 102 AAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEEIG 161

Query: 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187
           LDPSLVDVVT +EPFLSK+LLRV+PVIGIL ++  F P PNPGEVE VFDAPLEMFLKDE
Sbjct: 162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDE 221

Query: 188 NRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFK 247
           NRR EE+EWMGEKYL+HYF+Y   +K Y+IWG+TA IL+RAASV Y++PPAF E  PKFK
Sbjct: 222 NRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFK 281

Query: 248 FPK 250
           +PK
Sbjct: 282 YPK 284

Coenzyme A diphosphatase which mediates the cleavage of oxidized CoA. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|O22951|NUD22_ARATH Nudix hydrolase 22, chloroplastic OS=Arabidopsis thaliana GN=NUDT22 PE=2 SV=2

 Score =  324 bits (831), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 198/243 (81%), Gaps = 8/243 (3%)

Query: 11  RLIVIAQHLRDYKGP-PSTYDQMEQKI--RETSGKVTSLVGSQESASPTVRYAKTFRPKK 67
           RL+ +AQ LR YK P  S++D+ E+ +  +E++ K  + VG QES +P VR    FRPKK
Sbjct: 21  RLLALAQQLRVYKPPLSSSFDEREELLAYKESTRKSITHVGFQESMAP-VR----FRPKK 75

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           AAVL+CLFEGD+G+LRVILTKR+S LSTHSGEVSLPGGKAEE D+DDG TATREA+EEIG
Sbjct: 76  AAVLICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEEIG 135

Query: 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187
           LDPSLVDVV  +EPFLS++LLRV+PV+GIL +RKAF PTPNP EVE V DAP EMFLKDE
Sbjct: 136 LDPSLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLKDE 195

Query: 188 NRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFK 247
           NRR EE +WMGEK+L+H+F+Y+  +  Y+IWG+TA IL+RAA+VVYQ+PPAF E  P  K
Sbjct: 196 NRRSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKPNLK 255

Query: 248 FPK 250
           + K
Sbjct: 256 YSK 258

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8LET2|NUD11_ARATH Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT11 PE=1 SV=2

 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 145/189 (76%), Gaps = 5/189 (2%)

Query: 63  FRPKKAAVLVCLFEG---DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETAT 119
           F  K +AVLVCL++    D  ELRVILTKR++ LS+H GEV+LPGGK ++ D+DD  TA 
Sbjct: 29  FPAKSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIATAL 88

Query: 120 REAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAP 179
           REA+EEIGLDPSLV +++V+EPF++K  + V PVIG LH++KAFK  PNP EVEE+FD P
Sbjct: 89  REAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFDVP 148

Query: 180 LEMFLKDENRRVEEKEWMGEKYLLHYFNY--EQKNKKYLIWGITAAILVRAASVVYQKPP 237
           LEMFLKD NRR EE+E  GE+YLL YF+Y  E K + ++IW +TA IL+R AS+VYQ+ P
Sbjct: 149 LEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLP 208

Query: 238 AFEEGNPKF 246
            F+E  P F
Sbjct: 209 EFQERKPSF 217

Coenzyme A diphosphatase which mediates the cleavage of CoA into 3',5'-ADP from CoA and 4'-phosphopantetheine. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q99P30|NUDT7_MOUSE Peroxisomal coenzyme A diphosphatase NUDT7 OS=Mus musculus GN=Nudt7 PE=1 SV=2

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 7/178 (3%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
            K +VLV L     G+L ++ T R+ +L    GEV  PGGK +  D DD  TA REA+EE
Sbjct: 38  NKFSVLVPLL-ARGGKLYLMFTVRSDKLKREPGEVCFPGGKRDPVDTDDTATALREAQEE 96

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL-HNRKAFKPTPNPGEVEEVFDAPLEMFL 184
           +GL P  V+VV+ + P++      V PV+G L HN   F+  PN  EV+EVF  PL+ FL
Sbjct: 97  VGLHPHQVEVVSHLVPYVFDNDALVTPVVGFLDHN---FQAQPNADEVKEVFFVPLDYFL 153

Query: 185 KDENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFE 240
             +    ++    G  +++H F Y+  +    YLI G+T+ + V  A ++ ++ PAF+
Sbjct: 154 HPQVYYQKQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILEQSPAFK 211

Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P0C024|NUDT7_HUMAN Peroxisomal coenzyme A diphosphatase NUDT7 OS=Homo sapiens GN=NUDT7 PE=2 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 6/164 (3%)

Query: 80  GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI 139
           G+L ++ T R+ +L    GEV  PGGK +  D DD  TA REA+EE+GL P  V+VV  +
Sbjct: 51  GKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCL 110

Query: 140 EPFLSKYLLRVVPVIGIL-HNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMG 198
            P L      + P +G++ HN   F+  PNP EV++VF  PL  FL  +         +G
Sbjct: 111 VPCLIDTDTLITPFVGLIDHN---FQAQPNPAEVKDVFLVPLAYFLHPQVHDQHYVTRLG 167

Query: 199 EKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFE 240
            +++ H F Y   +    Y I G+TA + V  A ++ +K P FE
Sbjct: 168 HRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTFE 211

Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6D4L1|NUDL_ERWCT Uncharacterized Nudix hydrolase NudL OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=nudL PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 22/178 (12%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
           ++AAVLV +       L  +LT+R++ L  H+G+V+ PGG A++ D    ETA REA+EE
Sbjct: 30  RQAAVLVPIICHPTPTL--LLTRRSADLRKHAGQVAFPGGAADKTDRSIIETALREAQEE 87

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
           + + P  V V+ V+ P  S    +V PV+G++  +  F   PN  EV E+F+ PL     
Sbjct: 88  VAIPPENVQVLGVLPPLDSVSGFQVTPVVGLIAAQTRFH--PNEDEVAELFEMPL----- 140

Query: 186 DENRRVEEKEWMGEKYLLHYFNYEQKNKKYL-------IWGITAAILVRAASVVYQKP 236
                 +E   +   Y L     +Q+++ YL       +WG+TAAI+ + A  +  +P
Sbjct: 141 ------DEAFALTRYYPLDIERKQQRHRVYLSWYQQQFVWGLTAAIIHQLALQISDRP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q12524|PCD1_YEAST Peroxisomal coenzyme A diphosphatase 1, peroxisomal OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCD1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 42/228 (18%)

Query: 33  EQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASR 92
           ++++  +   + +L+  +   +P  R +     + +AV++ LF G  GELRV+LTKR+  
Sbjct: 5   QRRMLSSKQLIENLIRYKFHKTPYTRSSIWPFKRNSAVIILLFIGMKGELRVLLTKRSRT 64

Query: 93  LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL--DPSLV---------DVVTVIEP 141
           L + SG+VS PGGKA+   E     A REA+EEIGL  DP ++         ++V  +  
Sbjct: 65  LRSFSGDVSFPGGKADYFQETFESVARREAEEEIGLPHDPEVLHKEFGMKLDNLVMDMPC 124

Query: 142 FLSKYLLRVVPVIGILHNRKA---------------FKPTPNPGEVEEVFDAPLEMFL-- 184
           +LS+  L V P++  L+  K                F    NPGE   +F  PL   +  
Sbjct: 125 YLSRTFLSVKPMVCFLYKDKLEKHEDKYKVPLDIRKFFGKLNPGETSSLFSVPLNDLVIH 184

Query: 185 ----KDENRR------VEEKE----WMGEKYLLHYFNYEQKNKKYLIW 218
                DE+ +       E KE    W G K+L+ ++++   N   + W
Sbjct: 185 LLPEADEDVKSYQAEYFERKEYKLNWGGIKWLIMHYHFHVANNNEMPW 232

Coenzyme A diphosphatase which mediates the cleavage of CoA into 3',5'-ADP and 4'-phosphopantetheine. Has a strong preference for oxidized CoA disulfide (CoASSCoA) as substrate. May be required to remove potentially toxic oxidized CoA disulfide to maintain the capacity for beta-oxidation of fatty acids. Can degrade 8-oxo-dGTP in vitro; however, such activity may not be relevant in vivo.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|Q7N3M0|NUDL_PHOLL Uncharacterized Nudix hydrolase NudL OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=nudL PE=3 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 8/167 (4%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
           + AAVL+ +       L  +LT+R++ L +H+G+V+ PGG A+  D+    TA REA+EE
Sbjct: 27  RHAAVLLPIICKPKPTL--LLTRRSATLRSHAGQVAFPGGVADPKDKSIIATALREAEEE 84

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
           + +    V V+  + P  S     V P++G+L          NP EV ++F+ PL   L 
Sbjct: 85  VNIPHQKVQVLGQLAPLNSSGGYLVTPIVGLL--PPGLSLHSNPAEVAKIFEVPLSEALS 142

Query: 186 DENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVV 232
             +    +    G+++ ++++ Y+Q    +LIWG+TA I+ + A  V
Sbjct: 143 LSSYHYLDVSRRGQQHRVYFYWYQQ----HLIWGLTATIIHQLAQQV 185

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A7MKE8|NUDL_CROS8 Uncharacterized Nudix hydrolase NudL OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=nudL PE=3 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 24/179 (13%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
           ++AAVLV +      E  ++LTKRA+ L  H+G+V+ PGG  ++ D      A REA+EE
Sbjct: 30  RQAAVLVPVVR--RPEPGLLLTKRAATLRKHAGQVAFPGGAVDDTDASLIAAALREAQEE 87

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
           + + P  VDV+ V+ P  S    +V PV+GI+     +  + +  EV  VF+ PL   L+
Sbjct: 88  VAIPPEAVDVIGVLPPVDSVTGFQVTPVVGIIPPDLPYHASED--EVAAVFEMPLAEALR 145

Query: 186 -------DENRR-VEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKP 236
                  D +RR    + W+   +  HYF          +WG+TA I+   A  + +KP
Sbjct: 146 LGRYHPLDIHRRGNHHRVWL--SWYQHYF----------VWGMTAGIIRELALQIGEKP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B5FTK8|NUDL_SALDC Uncharacterized Nudix hydrolase NudL OS=Salmonella dublin (strain CT_02021853) GN=nudL PE=3 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 61  KTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATR 120
           KT   ++AAVL+ +       L  +LT+RA  L  H+G+V+ PGG  +  D      A R
Sbjct: 25  KTLNQRQAAVLIPVVRRPQPGL--LLTQRAIHLRKHAGQVAFPGGAVDSTDASLIAAALR 82

Query: 121 EAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPL 180
           EA+EE+ + P  V+V+ V+ P  S    +V PV+GI+     ++ + +  EV  VF+ PL
Sbjct: 83  EAQEEVAIPPQAVEVIGVLPPVDSVTGFQVTPVVGIIPPNLPWRASED--EVSAVFEMPL 140

Query: 181 EMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKP 236
              L+       +    G  + +    YE     Y +WG+TA IL   A  +  KP
Sbjct: 141 AQALQLGRYHPLDVYRRGNSHRVWLSWYEH----YFVWGMTANILRELALQIGVKP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Salmonella dublin (strain CT_02021853) (taxid: 439851)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
356548635	288	PREDICTED: nudix hydrolase 15, mitochond	0.980	0.881	0.716	1e-103
224116946	257	predicted protein [Populus trichocarpa]	0.961	0.968	0.724	1e-103
356521436	263	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.988	0.973	0.691	1e-100
255563058	248	Nudix hydrolase 15, mitochondrial precur	0.942	0.983	0.694	4e-98
18396900	293	nudix hydrolase 15 [Arabidopsis thaliana	0.957	0.846	0.693	4e-97
297851322	269	F1K23.5 [Arabidopsis lyrata subsp. lyrat	0.988	0.951	0.675	8e-97
225443508	282	PREDICTED: nudix hydrolase 15, mitochond	0.992	0.911	0.680	3e-96
224079127	245	predicted protein [Populus trichocarpa]	0.915	0.967	0.692	6e-96
30690557	285	nudix hydrolase 15 [Arabidopsis thaliana	0.926	0.842	0.703	9e-96
10764850	273	F1K23.5 [Arabidopsis thaliana]	0.957	0.908	0.685	3e-95

>gi|356548635|ref|XP_003542706.1| PREDICTED: nudix hydrolase 15, mitochondrial-like isoform 1 [Glycine max]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/254 (71%), Positives = 213/254 (83%)

Query: 3   SSSKSNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKT 62
           +SS    QRL  +AQHLR YK P    D +EQ I E  GKV S VG QESA P  +  + 
Sbjct: 32  ASSIGGSQRLFALAQHLRQYKAPSFPEDIVEQSIEEIGGKVVSQVGFQESAIPIGQNPEK 91

Query: 63  FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREA 122
           FRPKKAAVL+CLFEGD+G+LRVILTKR+S+LSTHSGEV+LPGGK EEGD+DDG+TA REA
Sbjct: 92  FRPKKAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVALPGGKTEEGDKDDGDTAKREA 151

Query: 123 KEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEM 182
           KEEIGLDP LV+VVTV+EPFLSK+LLRVVPVIGILH++KAFKP  NP EVE VFDAPLEM
Sbjct: 152 KEEIGLDPELVNVVTVLEPFLSKHLLRVVPVIGILHDKKAFKPVLNPAEVEAVFDAPLEM 211

Query: 183 FLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEG 242
           FLKDENRR +E+EWMGEKYLLH+F+Y+  +KKY+IWG+TA IL+RAASVVYQ+ PAF E 
Sbjct: 212 FLKDENRRQDEREWMGEKYLLHFFDYDIGHKKYIIWGLTAGILIRAASVVYQRQPAFVEQ 271

Query: 243 NPKFKFPKDVNRDT 256
           NPKFK P+DV++DT
Sbjct: 272 NPKFKLPQDVSKDT 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116946|ref|XP_002317435.1| predicted protein [Populus trichocarpa] gi|222860500|gb|EEE98047.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/250 (72%), Positives = 214/250 (85%), Gaps = 1/250 (0%)

Query: 10  QRLIVIAQHLRDYKGPPSTYDQME-QKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKA 68
           QRL+ +AQ LR YK P  + D++E Q I E++GKV S VG QESA+   +  + FRPK+A
Sbjct: 7   QRLMALAQQLRFYKPPSPSPDEIEEQNIEESAGKVVSQVGFQESATSIFKDPERFRPKRA 66

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           AVLVC+FEGD GE RVILTKR+SRLSTHSGEVSLPGGK +E D+DD ETATREAKEEIGL
Sbjct: 67  AVLVCIFEGDAGEFRVILTKRSSRLSTHSGEVSLPGGKVDERDKDDFETATREAKEEIGL 126

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188
           DPSLVDVVTV+EPFLSK+LLRV+PVIGIL N+KAFKPTPNP EVE +FDAPLEMF+KDEN
Sbjct: 127 DPSLVDVVTVLEPFLSKHLLRVIPVIGILSNKKAFKPTPNPAEVEAIFDAPLEMFIKDEN 186

Query: 189 RRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKF 248
           RRVEE EWMGEKYL+H+F+YE +NKKYLIWG+TA +L++AASVV+Q+PPAF E NP+FKF
Sbjct: 187 RRVEESEWMGEKYLIHFFDYETENKKYLIWGLTAGVLIKAASVVFQRPPAFMEQNPRFKF 246

Query: 249 PKDVNRDTFM 258
           PK  N+D  M
Sbjct: 247 PKGANKDMVM 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521436|ref|XP_003529362.1| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 15, mitochondrial-like [Glycine max]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/256 (69%), Positives = 214/256 (83%)

Query: 3   SSSKSNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKT 62
           +SS    +RL+ +AQHLR YK      D +EQ I E+ GKV S VG QESA+P  +  + 
Sbjct: 7   ASSIGGSRRLLALAQHLRQYKALSFPEDIVEQSIEESGGKVVSQVGFQESATPIDQNPEK 66

Query: 63  FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREA 122
           FRPKKAAVL+CLFEGD+G+LRVILTKR+S+LSTHSGEV+LPGGKA+EGD+DDG+TA REA
Sbjct: 67  FRPKKAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVALPGGKAKEGDKDDGDTAKREA 126

Query: 123 KEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEM 182
           KEEIGLDP LV+VVT +EPFLSK+LLRVVPVIGILH++KAFKP  NP EVE VFDAPLEM
Sbjct: 127 KEEIGLDPELVNVVTXLEPFLSKHLLRVVPVIGILHDKKAFKPVLNPAEVEAVFDAPLEM 186

Query: 183 FLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEG 242
           FLKD+NRR +E+EWMGEKYLLH+F+Y   +KKY+IWG+TA IL+R ASVVYQ+ PAF E 
Sbjct: 187 FLKDKNRRQDEREWMGEKYLLHFFDYGIGHKKYIIWGLTAGILIRXASVVYQRLPAFVEQ 246

Query: 243 NPKFKFPKDVNRDTFM 258
           NPKFK P+DV++DT +
Sbjct: 247 NPKFKLPQDVSKDTII 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563058|ref|XP_002522533.1| Nudix hydrolase 15, mitochondrial precursor, putative [Ricinus communis] gi|223538224|gb|EEF39833.1| Nudix hydrolase 15, mitochondrial precursor, putative [Ricinus communis]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 175/252 (69%), Positives = 209/252 (82%), Gaps = 8/252 (3%)

Query: 7   SNIQRLIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPK 66
           S   RL+ +A  LR YK P ++ D++E++  E        VG QES +P  +  + FRPK
Sbjct: 4   SGSNRLMALAHQLRFYKPPSASPDEIEEQTIE--------VGFQESVTPIPKDPQRFRPK 55

Query: 67  KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI 126
           +AAVLVC+F GD+G+ RVILTKR+SRLSTHSGEVSLPGGKAEEGD+DDGETATREAKEEI
Sbjct: 56  RAAVLVCIFAGDDGDFRVILTKRSSRLSTHSGEVSLPGGKAEEGDKDDGETATREAKEEI 115

Query: 127 GLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186
           GLDP+LV VVTV+EPFLSK+LLRV+PVIGIL ++KAFK  PNP EVE VFDAPLEMF+KD
Sbjct: 116 GLDPTLVHVVTVLEPFLSKHLLRVIPVIGILRDKKAFKAMPNPAEVEAVFDAPLEMFIKD 175

Query: 187 ENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKF 246
           ENRRVEE+EWMGEKYL+H+F+YE + KKYLIWG+TA IL+RAASVV+Q+PPAF E NPKF
Sbjct: 176 ENRRVEEREWMGEKYLVHFFDYETEKKKYLIWGLTAGILIRAASVVFQRPPAFVEQNPKF 235

Query: 247 KFPKDVNRDTFM 258
           +FPK VN DT M
Sbjct: 236 RFPKVVNSDTVM 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396900|ref|NP_564316.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|42570219|ref|NP_849725.2| nudix hydrolase 15 [Arabidopsis thaliana] gi|79318810|ref|NP_001031104.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|110736910|dbj|BAF00412.1| hypothetical protein [Arabidopsis thaliana] gi|332192901|gb|AEE31022.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|332192903|gb|AEE31024.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|332192905|gb|AEE31026.1| nudix hydrolase 15 [Arabidopsis thaliana]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 174/251 (69%), Positives = 206/251 (82%), Gaps = 3/251 (1%)

Query: 11  RLIVIAQHLRDYKGPPST-YDQME--QKIRETSGKVTSLVGSQESASPTVRYAKTFRPKK 67
           RL  +AQ LR YK PPS+ +D  E  Q  +ET+GKV S VG QES +P  +    F+PK+
Sbjct: 42  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 101

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           AAVL+CLFEGD+G+LRVILTKR+S+LSTHSGEVSLPGGKAEE D+DDG TATREA+EEIG
Sbjct: 102 AAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEEIG 161

Query: 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187
           LDPSLVDVVT +EPFLSK+LLRV+PVIGIL ++  F P PNPGEVE VFDAPLEMFLKDE
Sbjct: 162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDE 221

Query: 188 NRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFK 247
           NRR EE+EWMGEKYL+HYF+Y   +K Y+IWG+TA IL+RAASV Y++PPAF E  PKFK
Sbjct: 222 NRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFK 281

Query: 248 FPKDVNRDTFM 258
           +PK V + T M
Sbjct: 282 YPKMVEKHTCM 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851322|ref|XP_002893542.1| F1K23.5 [Arabidopsis lyrata subsp. lyrata] gi|297339384|gb|EFH69801.1| F1K23.5 [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 175/259 (67%), Positives = 210/259 (81%), Gaps = 3/259 (1%)

Query: 3   SSSKSNIQRLIVIAQHLRDYKGPPST-YDQME--QKIRETSGKVTSLVGSQESASPTVRY 59
           SS      RL  +AQ LR YK PPS+ +D  E  Q  +ET+GKV S VG QES +P  + 
Sbjct: 10  SSFGGGSSRLSALAQQLRRYKPPPSSSFDDAEEMQTDQETAGKVVSQVGFQESIAPVSKD 69

Query: 60  AKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETAT 119
            + F+PK+AAVL+C+FEGD+G+LRVILTKR+S+LSTHSGEVSLPGGKAEE D+DDG TAT
Sbjct: 70  PERFKPKRAAVLICIFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTAT 129

Query: 120 REAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAP 179
           REA+EEIGLDPSLV VVT +EPFLSK+LLRV+PVIGIL ++  F PTPNPGEVE+VFDAP
Sbjct: 130 REAEEEIGLDPSLVAVVTSLEPFLSKHLLRVIPVIGILRDKTKFNPTPNPGEVEDVFDAP 189

Query: 180 LEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAF 239
           LEMFLKDENRR EE+EWMGEKYL+HYF+Y   +K Y+IWG+TA IL+RAASV Y++PPAF
Sbjct: 190 LEMFLKDENRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAF 249

Query: 240 EEGNPKFKFPKDVNRDTFM 258
            E  PKFK+PK V + T M
Sbjct: 250 IEQCPKFKYPKMVEKHTCM 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443508|ref|XP_002276381.1| PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/263 (68%), Positives = 217/263 (82%), Gaps = 6/263 (2%)

Query: 1   MESSSK-SNIQRLIVIAQHLRDYKG--PPST-YDQMEQK-IRETSGKVTSLVGSQESASP 55
           MESS+     QRL+ +A+ LR YK   PPS  YD +E++   E +GKV S VG  ESA+ 
Sbjct: 20  MESSNMVGGSQRLLNLARQLRLYKPSPPPSDDYDDLEERGSEEAAGKVVSQVGFAESAT- 78

Query: 56  TVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDG 115
           +V Y   FRPK+AAVL+CLFEGD G+LRVILTKR+S+LSTHSGEVSLPGGK EEGD+DD 
Sbjct: 79  SVEYEGRFRPKRAAVLICLFEGDAGDLRVILTKRSSKLSTHSGEVSLPGGKQEEGDKDDA 138

Query: 116 ETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV 175
           +TATREA EEIGLDPSLV+VVTV+EPFLSK+LLRVVPVIGIL ++KAF+P PN  EV+ V
Sbjct: 139 DTATREANEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGILSDKKAFEPAPNADEVDAV 198

Query: 176 FDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQK 235
           FDAPLEMF+KDENRR EE+EWMG+KYL+H+F+YE +NKKYLIWG+TA IL+RAASVV+Q+
Sbjct: 199 FDAPLEMFIKDENRRSEEREWMGQKYLIHFFDYEMENKKYLIWGLTAGILIRAASVVFQQ 258

Query: 236 PPAFEEGNPKFKFPKDVNRDTFM 258
           PPAF E  P FK P+ V++DT M
Sbjct: 259 PPAFLEQKPNFKVPRGVDKDTIM 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079127|ref|XP_002305759.1| predicted protein [Populus trichocarpa] gi|222848723|gb|EEE86270.1| predicted protein [Populus trichocarpa]

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 173/250 (69%), Positives = 206/250 (82%), Gaps = 13/250 (5%)

Query: 10  QRLIVIAQHLRDYKGPPSTYDQME-QKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKA 68
           QRL+ +AQ LR YK P  + D++E Q I E++GKV              +  + FRP +A
Sbjct: 7   QRLVALAQQLRFYKPPSLSPDEIEEQNIEESAGKVVP------------QTPERFRPNRA 54

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           AVLVC+FEGD G+ RVILTKR+S+LSTHSGEVSLPGGKA+E D+DD ETATREAKEEIGL
Sbjct: 55  AVLVCIFEGDAGDFRVILTKRSSKLSTHSGEVSLPGGKADESDKDDFETATREAKEEIGL 114

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN 188
           DPSLV+VVTV+EPFLSK+LLRV+PVIGIL N+KAFKPTPNP EVE VFDAPLEMF+KDEN
Sbjct: 115 DPSLVNVVTVLEPFLSKHLLRVIPVIGILTNKKAFKPTPNPAEVEAVFDAPLEMFIKDEN 174

Query: 189 RRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKF 248
           RRVEE+EWMGEKYL+H+F+YE  NKKYLIWG+TA IL++AASVVYQ+PPAF E NP+FKF
Sbjct: 175 RRVEEREWMGEKYLIHFFDYETGNKKYLIWGLTAGILIKAASVVYQRPPAFVEQNPRFKF 234

Query: 249 PKDVNRDTFM 258
           PK  + DT +
Sbjct: 235 PKGASNDTVV 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690557|ref|NP_849724.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|42571687|ref|NP_973934.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|68565906|sp|Q8GYB1.2|NUD15_ARATH RecName: Full=Nudix hydrolase 15, mitochondrial; Short=AtNUDT15; AltName: Full=Coenzyme A diphosphatase NUDT15; Flags: Precursor gi|51968806|dbj|BAD43095.1| unknown protein [Arabidopsis thaliana] gi|51971072|dbj|BAD44228.1| unknown protein [Arabidopsis thaliana] gi|62320007|dbj|BAD94135.1| hypothetical protein [Arabidopsis thaliana] gi|110741362|dbj|BAF02231.1| hypothetical protein [Arabidopsis thaliana] gi|222423551|dbj|BAH19745.1| AT1G28960 [Arabidopsis thaliana] gi|332192902|gb|AEE31023.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|332192904|gb|AEE31025.1| nudix hydrolase 15 [Arabidopsis thaliana]

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 202/243 (83%), Gaps = 3/243 (1%)

Query: 11  RLIVIAQHLRDYKGPPST-YDQME--QKIRETSGKVTSLVGSQESASPTVRYAKTFRPKK 67
           RL  +AQ LR YK PPS+ +D  E  Q  +ET+GKV S VG QES +P  +    F+PK+
Sbjct: 42  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 101

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           AAVL+CLFEGD+G+LRVILTKR+S+LSTHSGEVSLPGGKAEE D+DDG TATREA+EEIG
Sbjct: 102 AAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEEIG 161

Query: 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187
           LDPSLVDVVT +EPFLSK+LLRV+PVIGIL ++  F P PNPGEVE VFDAPLEMFLKDE
Sbjct: 162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDE 221

Query: 188 NRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFK 247
           NRR EE+EWMGEKYL+HYF+Y   +K Y+IWG+TA IL+RAASV Y++PPAF E  PKFK
Sbjct: 222 NRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFK 281

Query: 248 FPK 250
           +PK
Sbjct: 282 YPK 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10764850|gb|AAF24540.2|AC007508_3 F1K23.5 [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/254 (68%), Positives = 206/254 (81%), Gaps = 6/254 (2%)

Query: 11  RLIVIAQHLRDYKGPPST-YDQME--QKIRETSGKVTSLVGSQESASPTVRYAKTFRPKK 67
           RL  +AQ LR YK PPS+ +D  E  Q  +ET+GKV S VG QES +P  +    F+PK+
Sbjct: 19  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 78

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSG---EVSLPGGKAEEGDEDDGETATREAKE 124
           AAVL+CLFEGD+G+LRVILTKR+S+LSTHSG   EVSLPGGKAEE D+DDG TATREA+E
Sbjct: 79  AAVLICLFEGDDGDLRVILTKRSSKLSTHSGSYGEVSLPGGKAEEDDKDDGMTATREAEE 138

Query: 125 EIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184
           EIGLDPSLVDVVT +EPFLSK+LLRV+PVIGIL ++  F P PNPGEVE VFDAPLEMFL
Sbjct: 139 EIGLDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFL 198

Query: 185 KDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNP 244
           KDENRR EE+EWMGEKYL+HYF+Y   +K Y+IWG+TA IL+RAASV Y++PPAF E  P
Sbjct: 199 KDENRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCP 258

Query: 245 KFKFPKDVNRDTFM 258
           KFK+PK V + T M
Sbjct: 259 KFKYPKMVEKHTCM 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2055420	302	NUDT22 "nudix hydrolase homolo	0.926	0.794	0.614	3.1e-74
TAIR|locus:2152415	222	NUDT11 "nudix hydrolase homolo	0.710	0.828	0.566	6.3e-53
TIGR_CMR|GSU_3375	193	GSU_3375 "mutT/nudix family pr	0.637	0.854	0.354	5.3e-24
UNIPROTKB|E1C8S6	307	NUDT7 "Uncharacterized protein	0.664	0.560	0.372	1.3e-22
UNIPROTKB|H9KZB9	307	H9KZB9 "Uncharacterized protei	0.664	0.560	0.372	1.3e-22
MGI|MGI:1914778	236	Nudt7 "nudix (nucleoside dipho	0.687	0.754	0.338	1.3e-20
TIGR_CMR|CPS_3615	191	CPS_3615 "MutT/nudix family pr	0.594	0.806	0.378	7.2e-20
TIGR_CMR|SO_2220	195	SO_2220 "MutT/nudix family pro	0.590	0.784	0.368	1.2e-19
TIGR_CMR|SPO_0025	190	SPO_0025 "hydrolase, NUDIX fam	0.598	0.815	0.364	1.2e-19
UNIPROTKB|G1RS58	238	NUDT7 "Uncharacterized protein	0.656	0.714	0.333	4e-19

TAIR|locus:2055420 NUDT22 "nudix hydrolase homolog 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 153/249 (61%), Positives = 191/249 (76%)

Query:    11 RLIVIAQHLRDYKGP-PSTYDQMEQKI--RETSGKVTSLVGSQESASPTVRYAKTFRPKK 67
             RL+ +AQ LR YK P  S++D+ E+ +  +E++ K  + VG QES +P VR    FRPKK
Sbjct:    21 RLLALAQQLRVYKPPLSSSFDEREELLAYKESTRKSITHVGFQESMAP-VR----FRPKK 75

Query:    68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEEIG 127
             AAVL+CLFEGD+G+LRVILTKR+S LSTHSGEVSLP             TATREA+EEIG
Sbjct:    76 AAVLICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEEIG 135

Query:   128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE 187
             LDPSLVDVV  +EPFLS++LLRV+PV+GIL +RKAF PTPNP EVE V DAP EMFLKDE
Sbjct:   136 LDPSLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLKDE 195

Query:   188 NRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFK 247
             NRR EE +WMGEK+L+H+F+Y+  +  Y+IWG+TA IL+RAA+VVYQ+PPAF E  P  K
Sbjct:   196 NRRSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKPNLK 255

Query:   248 FPKDVNRDT 256
             + K +N+ T
Sbjct:   256 YSK-MNQAT 263

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

TAIR|locus:2152415 NUDT11 "nudix hydrolase homolog 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 107/189 (56%), Positives = 136/189 (71%)

Query:    63 FRPKKAAVLVCLFEG---DNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTAT 119
             F  K +AVLVCL++    D  ELRVILTKR++ LS+H GEV+LP             TA 
Sbjct:    29 FPAKSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIATAL 88

Query:   120 REAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAP 179
             REA+EEIGLDPSLV +++V+EPF++K  + V PVIG LH++KAFK  PNP EVEE+FD P
Sbjct:    89 REAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFDVP 148

Query:   180 LEMFLKDENRRVEEKEWMGEKYLLHYFNY--EQKNKKYLIWGITAAILVRAASVVYQKPP 237
             LEMFLKD NRR EE+E  GE+YLL YF+Y  E K + ++IW +TA IL+R AS+VYQ+ P
Sbjct:   149 LEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLP 208

Query:   238 AFEEGNPKF 246
              F+E  P F
Sbjct:   209 EFQERKPSF 217

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA;RCA

GO:0000210 "NAD+ diphosphatase activity" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0010945 "CoA pyrophosphatase activity" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IDA

GO:2001294 "malonyl-CoA catabolic process" evidence=IDA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TIGR_CMR|GSU_3375 GSU_3375 "mutT/nudix family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 61/172 (35%), Positives = 91/172 (52%)

Query:    65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKE 124
             P  AAVL+ LFE D GE+ V+ TKR   L+ H GE+S P             TA RE  E
Sbjct:    29 PIPAAVLLPLFERD-GEVHVLFTKRTEHLNHHRGEISFPGGVSHPDDASPCETALRETWE 87

Query:   125 EIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184
             EIG+ P  VD++  ++ F S +   V P +G++   +      NPGE+E +   PL+  L
Sbjct:    88 EIGIPPGEVDILGELDDFYSVHDYLVTPCVGVIRGDRPL--VVNPGEIERIIVVPLKHLL 145

Query:   185 KDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKP 236
             + E  R E+  W G  + +H++ Y        IWG+TAAIL +  + ++ +P
Sbjct:   146 RPEAFRTEDWTWRGRTHPVHFYRYMDDE----IWGLTAAILSQFLNTIFPRP 193

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|E1C8S6 NUDT7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 66/177 (37%), Positives = 93/177 (52%)

Query:    66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEE 125
             +KA+VL+ L   D G L ++LT R+ +L    GEV  P             TA REAKEE
Sbjct:   103 RKASVLLPLLLRD-GALCLLLTVRSMQLRRSPGEVCFPGGKREEIDKDEIDTALREAKEE 161

Query:   126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
             +GL P  V+V+  + P + K    V PV+G + +   F+ +PNP EV +VF  PLE FLK
Sbjct:   162 VGLQPEKVEVICRLVPGIDKMNHLVTPVVGFIED--TFQASPNPDEVSDVFVVPLEYFLK 219

Query:   186 DENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFE 240
               N      +  G    +H F Y+  +  K + IWG+TA   V  A V+++  P FE
Sbjct:   220 PLNYVALPYKNKGYLSWMHCFTYDDHEHKKSFKIWGLTAHFAVFLAIVIFRTKPTFE 276

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

UNIPROTKB|H9KZB9 H9KZB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 66/177 (37%), Positives = 93/177 (52%)

Query:    66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEE 125
             +KA+VL+ L   D G L ++LT R+ +L    GEV  P             TA REAKEE
Sbjct:   103 RKASVLLPLLLRD-GALCLLLTVRSMQLRRSPGEVCFPGGKREEMDKDEIDTALREAKEE 161

Query:   126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
             +GL P  V+V+  + P + K    V PV+G + +   F+ +PNP EV +VF  PLE FLK
Sbjct:   162 VGLQPEKVEVICRLVPGIDKMNHLVTPVVGFIED--TFQASPNPDEVSDVFVVPLEYFLK 219

Query:   186 DENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFE 240
               N      +  G    +H F Y+  +  K + IWG+TA   V  A V+++  P FE
Sbjct:   220 PLNYVALPYKNKGYLSWMHCFTYDDHEHKKSFKIWGLTAHFAVFLAIVIFRTKPTFE 276

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

MGI|MGI:1914778 Nudt7 "nudix (nucleoside diphosphate linked moiety X)-type motif 7" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 63/186 (33%), Positives = 97/186 (52%)

Query:    58 RYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXT 117
             RY+      K +VLV L     G+L ++ T R+ +L    GEV  P             T
Sbjct:    31 RYSH-LSSNKFSVLVPLL-ARGGKLYLMFTVRSDKLKREPGEVCFPGGKRDPVDTDDTAT 88

Query:   118 ATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL-HNRKAFKPTPNPGEVEEVF 176
             A REA+EE+GL P  V+VV+ + P++      V PV+G L HN   F+  PN  EV+EVF
Sbjct:    89 ALREAQEEVGLHPHQVEVVSHLVPYVFDNDALVTPVVGFLDHN---FQAQPNADEVKEVF 145

Query:   177 DAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQ 234
               PL+ FL  +    ++    G  +++H F Y+  +    YLI G+T+ + V  A ++ +
Sbjct:   146 FVPLDYFLHPQVYYQKQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILE 205

Query:   235 KPPAFE 240
             + PAF+
Sbjct:   206 QSPAFK 211

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003986 "acetyl-CoA hydrolase activity" evidence=IDA

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0015938 "coenzyme A catabolic process" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0046356 "acetyl-CoA catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0050873 "brown fat cell differentiation" evidence=IDA

TIGR_CMR|CPS_3615 CPS_3615 "MutT/nudix family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 61/161 (37%), Positives = 86/161 (53%)

Query:    66 KKAAVLVCLFEGDNGE-LRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKE 124
             + AAVL+ L E D+GE L+V+LTKRAS L  H  +VS P             TA REA E
Sbjct:    29 RSAAVLIALVESDSGEGLQVLLTKRASHLKHHPSQVSFPGGKVEREDKSLIDTALREAFE 88

Query:   125 EIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184
             EIGL    V V   + P+ +    +V P+I I+ + + ++   N  EV EVF  PL+ FL
Sbjct:    89 EIGLSREAVTVAGQLPPYETISGFQVTPIIAIVASSQIYQIDTN--EVTEVFQVPLQHFL 146

Query:   185 KDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAIL 225
                +  V      G+++ +H+  Y    K+Y IWG TA +L
Sbjct:   147 TTTDHHVFVAHKGGKQHNVHFLPY----KEYNIWGATAVML 183

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|SO_2220 SO_2220 "MutT/nudix family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 59/160 (36%), Positives = 84/160 (52%)

Query:    66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEE 125
             +KAAVL+ L E D GEL +ILT+R   L  H G++S P              A REA+EE
Sbjct:    29 RKAAVLIPLQEID-GELNLILTQRPMHLRAHPGQISFPGGKIEASDPSAIMAALREAEEE 87

Query:   126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
             IGL    VDV+       +     + PV+GI+  ++ F    +PGEV + F  PL  F++
Sbjct:    88 IGLCRENVDVIGTFPAHNTFTGFEITPVVGII--KQDFTLRLDPGEVADCFTVPLSFFIE 145

Query:   186 DENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAIL 225
               +R  +E    G  Y +H+  Y+Q+     IWG TAAI+
Sbjct:   146 PRHRHRKEFLRKGRYYSVHFIPYQQR----FIWGATAAII 181

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

TIGR_CMR|SPO_0025 SPO_0025 "hydrolase, NUDIX family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 59/162 (36%), Positives = 82/162 (50%)

Query:    64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAK 123
             R + A VLV +    +G  RVILTKR+S L  H G+++ P              A REA+
Sbjct:    27 RLRPAGVLVPVTLA-HGAPRVILTKRSSALKHHPGQIAFPGGKQDEGDADVIAAALREAE 85

Query:   124 EEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183
             EEIGL  +L  V+  +    +     V PV+ ++   + F   P PGEVEEVF  PL   
Sbjct:    86 EEIGLTRTLPQVLGTLPAHETVTAFTVTPVVAVVE--RTFDVRPEPGEVEEVFSVPLAHL 143

Query:   184 LKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAIL 225
             ++ EN  V+ + W G++   HYF        Y IWG TA +L
Sbjct:   144 MRPENYSVQSRRWRGQRR--HYFTVPFG--PYYIWGATARML 181

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|G1RS58 NUDT7 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 59/177 (33%), Positives = 89/177 (50%)

Query:    67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEEI 126
             K +VL+ L   + G+L ++ T R+ +L    GEV  P             TA REA+EE+
Sbjct:    39 KYSVLLPLVAKE-GKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEV 97

Query:   127 GLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL-HNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
             GL P  V+VV  + P L      + P +G++ HN   F+  PNP EV++VF  PL  FL 
Sbjct:    98 GLHPHQVEVVCCLMPCLIDTDTMITPFVGLIDHN---FQAQPNPAEVKDVFLVPLAYFLH 154

Query:   186 DENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFE 240
              +         +G +++ H F Y   +    Y I G+TA + V  A ++ +K P FE
Sbjct:   155 PQVHDQHYVTRLGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTFE 211

GO:0003986 "acetyl-CoA hydrolase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0015938 "coenzyme A catabolic process" evidence=ISS

GO:0046356 "acetyl-CoA catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYB1	NUD15_ARATH	3, ., 6, ., 1, ., -	0.7037	0.9266	0.8421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
PLN02709	222	PLN02709, PLN02709, nudix hydrolase	2e-77
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	3e-62
PRK10707	190	PRK10707, PRK10707, putative NUDIX hydrolase; Prov	6e-27
pfam00293	133	pfam00293, NUDIX, NUDIX domain	6e-13
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-08
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-07
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	3e-06
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	1e-05
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	3e-05
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	4e-05
cd03676	180	cd03676, Nudix_hydrolase_3, Members of the Nudix h	1e-04
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	3e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	5e-04
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	6e-04
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	7e-04
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	8e-04
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	9e-04
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	0.002
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	0.002
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	0.004
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	0.004

>gnl|CDD|178311 PLN02709, PLN02709, nudix hydrolase

 Score =  233 bits (595), Expect = 2e-77
 Identities = 115/189 (60%), Positives = 148/189 (78%), Gaps = 5/189 (2%)

Query: 63  FRPKKAAVLVCLFEG---DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETAT 119
           F  K +AVLVCL++    D  ELRVILTKR+S LS+H GEV+LPGGK +E D+DD  TA 
Sbjct: 29  FPAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATAL 88

Query: 120 REAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAP 179
           REA+EEIGLDPSLV +++V+EPF++K  + V PVIG LH++KAFKP PNP EVEE+FD P
Sbjct: 89  REAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVP 148

Query: 180 LEMFLKDENRRVEEKEWMGEKYLLHYFNY--EQKNKKYLIWGITAAILVRAASVVYQKPP 237
           LEMFLKD+N+R EE+E  GE+YLL YF+Y  E K + ++IW +TA IL+R AS+VYQ+ P
Sbjct: 149 LEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIWALTAGILIRVASIVYQRLP 208

Query: 238 AFEEGNPKF 246
            F+E  P+F
Sbjct: 209 EFQERKPRF 217

Length = 222

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score =  192 bits (490), Expect = 3e-62
 Identities = 70/161 (43%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
           ++AAVLV L E + GELRV+LTKRAS L +H G+V+ PGGK + GDED   TA REA+EE
Sbjct: 1   RRAAVLVLLVERE-GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEE 59

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
           IGL P  V+V+  + P+ ++    V PV+G++          NP EV EVF+ PL   L 
Sbjct: 60  IGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPP--PLPLVLNPDEVAEVFEVPLSFLLD 117

Query: 186 DENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILV 226
             N R   +   G       F      + Y+IWG+TA IL 
Sbjct: 118 PANPRTTRRHGRGG-LTFPAFALP--GEGYVIWGLTARILS 155

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|182663 PRK10707, PRK10707, putative NUDIX hydrolase; Provisional

 Score =  102 bits (257), Expect = 6e-27
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 22/171 (12%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
           ++AAVL+ +       L  +LT+R+  L  H+G+V+ PGG  +  D     TA REA+EE
Sbjct: 30  RQAAVLIPIVRRPQPTL--LLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEE 87

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
           + + PS V+V+ V+ P  S    +V PV+GI+     ++   N  EV  VF+ PL   L 
Sbjct: 88  VAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPDLPYR--ANEDEVAAVFEMPLAEALH 145

Query: 186 -------DENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAA 229
                  D  RR       G+ + +    YEQ    Y +WG+TA I+   A
Sbjct: 146 LGRYHPLDIYRR-------GQSHRVWLSWYEQ----YFVWGMTAGIIRELA 185

Length = 190

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 42/122 (34%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
           ++ AV V L   D     V+L +R+       G   LPGGK E G E   E A RE +EE
Sbjct: 1   RRRAVGVVLLNEDG---EVLLVRRSRPPV-FPGLWELPGGKVEPG-ESPEEAAVRELEEE 55

Query: 126 IGLDPSLVDVVTVIE-PFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL 184
            GL   L+ ++ V+E P   +     V V          +P PN  EV EV   PLE  L
Sbjct: 56  TGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELL 115

Query: 185 KD 186
           + 
Sbjct: 116 EL 117

Length = 133

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 13/162 (8%)

Query: 60  AKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETAT 119
           A   + +  AV V +     G   V+L +R        G   LPGGK E G+E   E A 
Sbjct: 4   AVQRKVRDVAVAVLVGRDGPG--EVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAA 57

Query: 120 REAKEEIGLDPSLVDVVTVIE----PFLSKYLLRVVPVIGILH---NRKAFKPTPNPGEV 172
           RE +EE GL      +  + E    P     +      +  +    +  A          
Sbjct: 58  RELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPS 117

Query: 173 EEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKK 214
           EE+ D       +     + E +   +             K+
Sbjct: 118 EELEDLEWVPLDELAALVLAEDQVKRDAKKALLLLLFLALKR 159

Length = 161

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           AV   +    + + RV+L +RA       G   LPGG  E G E   E A RE +EE GL
Sbjct: 2   AVGAVIL---DEDGRVLLVRRADS---PGGLWELPGGGVEPG-ETLEEAAIREVREETGL 54

Query: 129 DPS---LVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVE 173
           D     L+ V  V  P   ++ +  V +  ++       P     EV 
Sbjct: 55  DVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVR 102

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 79  NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV 138
           N + +V+L KR    S  +G  +LPGG  E G E   E A RE  EE GL    V  +TV
Sbjct: 11  NPKGKVLLGKRKG--SHGAGTWALPGGHLEFG-ESFEECAAREVLEETGLHIENVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 83  RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE 140
           R++L +RA+     +G  +LPGG  E G E   E A RE KEE GL   +++++ V +
Sbjct: 22  RILLVRRAN--EPGAGYWALPGGFVEIG-ETLEEAARRELKEETGLRVRVLELLAVFD 76

Length = 145

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           AV   +F G     RV+L +RA+     +G  S PGGK E G E   + A RE  EE GL
Sbjct: 2   AVGAVVFRGG----RVLLVRRANPPD--AGLWSFPGGKVELG-ETLEQAALRELLEETGL 54

Query: 129 DPSLVDVVTVIEPFLS 144
           +  +  ++TV++    
Sbjct: 55  EAEVGRLLTVVDVIER 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG- 127
           AV V L   D     V+L +RA+      G+ +LP G  E+G ED    A REA+EEIG 
Sbjct: 2   AVYVLLRRDD----EVLLQRRANT-GYMDGQWALPAGHLEKG-EDAVTAAVREAREEIGV 55

Query: 128 -LDPSLVDVVTVI 139
            LDP  + +   +
Sbjct: 56  TLDPEDLRLAHTM 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 71  LVCLFEGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLD 129
           L      ++G LR+ + +R+   +T  G + +L  G    G E   ET  +E  EE GL 
Sbjct: 37  LNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHG-EGPEETLVKECDEEAGLP 95

Query: 130 PSLVD------VVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183
             LV       VV+ +    +  L   V  +  L     F P P  GEVE      ++  
Sbjct: 96  EDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEV 155

Query: 184 LKDENRRVEEKEWM 197
           L    R ++E E+ 
Sbjct: 156 L----RALKEGEFK 165

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 180

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 78  DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVV 136
           +  E+ V+  +             LPGG  + G ED  + A RE  EE G+D   V VV
Sbjct: 12  EKNEVLVVQERNK-----TPNGWKLPGGLVDPG-EDIFDGAVREVLEETGIDTEFVSVV 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 83  RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP 130
           +V+L +R+   +   G++++PGG  E   E   E   RE +EE+G+DP
Sbjct: 12  KVLLERRSLTKNADPGKLNIPGGHIE-AGESQEEALLREVQEELGVDP 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 6/51 (11%)

Query: 79  NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD 129
           + E RV+L +R+      +G  +LPGG  E G E   +TA RE +EE GLD
Sbjct: 11  DDEGRVLLIRRSD-----NGLWALPGGAVEPG-ESPADTAVREVREETGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 102 LPGGKAEEGDEDDGETATREAKEEIGLD 129
           LPGGK E G E   +   RE  EE+GLD
Sbjct: 27  LPGGKIEAG-ETPLQALIRELSEELGLD 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 22/116 (18%)

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           A V++      N +  V+L KR     + +G+  LPGG  E G E   ETA RE KEE G
Sbjct: 10  AGVILL-----NEQGEVLLQKR-----SDTGDWGLPGGAMELG-ESLEETARRELKEETG 58

Query: 128 LDPSLVDVVTVIEPFLSKYLL------RVVPVIGILHNRKAF--KPTPNPGEVEEV 175
           L+   V+ + ++  +  K             ++ + +  K F  K  P+  E  E+
Sbjct: 59  LE---VEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 27/125 (21%)

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           AA  V  F G +G + V+L  R         + SLP GK E G E   E A RE +EE G
Sbjct: 3   AAGGVV-FRGSDGGIEVLLIHRPRGD-----DWSLPKGKLEPG-ETPPEAAVREVEEETG 55

Query: 128 LDPSLVDVVTVIE-PFLSK----------YLLRVVPVIGILHNRKAFKPTPNPGEVEEVF 176
           +   + D +  I   F S           +L+R +           F P P+  EV+EV 
Sbjct: 56  IRAEVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGG--------EFTPQPDE-EVDEVR 106

Query: 177 DAPLE 181
             P +
Sbjct: 107 WLPPD 111

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 63  FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREA 122
           +RP    V V LF   N + +V + +R        G    P G  +EG ED  + A RE 
Sbjct: 2   YRP---NVGVVLF---NEDGKVFVGRRID----TPGAWQFPQGGIDEG-EDPEQAALREL 50

Query: 123 KEEIGLDPSLVDVV 136
           +EE GLDP  V+++
Sbjct: 51  EEETGLDPDSVEII 64

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 83  RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV 138
           R+++ KR+    T  G+  LPGGK EEG E   E   RE  EE GL  +       
Sbjct: 14  RILILKRSKDERTAPGKWELPGGKVEEG-ETFEEALKREVYEETGLTVTPFLRYPS 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 78  DNGELRVILTKRASRLSTHSGEVSLPGGKAE--EGDEDDGETATREAKEEIGLDPSLVDV 135
           D+G+L ++   RA      +G   +PGGK +  E  ED      RE +EE GL      +
Sbjct: 12  DDGKLLLVKRLRAPE----AGHWGIPGGKVDWMEAVED---AVVREIEEETGLSIHSTRL 64

Query: 136 VTVIEPF 142
           + V++  
Sbjct: 65  LCVVDHI 71

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 67  KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI 126
           + AV+V L +G+     V+L +R S  S      +LPGG  E G E   E A RE KEE 
Sbjct: 9   RVAVVVFLLKGN----SVLLGRRRS--SIGDSTFALPGGHLEFG-ESFEECAAREVKEET 61

Query: 127 GLDPSLVDVVTV 138
           GL+   ++++TV
Sbjct: 62  GLEIEKIELLTV 73

Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PLN02709	222	nudix hydrolase	100.0
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	100.0
PRK10707	190	putative NUDIX hydrolase; Provisional	100.0
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.97
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.78
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.77
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.76
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.76
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.75
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.75
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.74
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.73
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.73
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.72
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.72
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.72
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.71
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.71
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.71
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.7
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.7
PLN02325	144	nudix hydrolase	99.7
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.7
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.7
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.7
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.69
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.69
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.69
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.68
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.68
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.68
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.68
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.68
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.68
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.67
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.67
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.67
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.67
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.66
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.66
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.66
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.66
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.65
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.64
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.64
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.64
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.64
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.63
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.63
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.63
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.63
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.63
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.62
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.6
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.6
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.6
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.6
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.6
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.6
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.6
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.58
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.58
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.57
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.57
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.57
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.54
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.54
PLN02791	770	Nudix hydrolase homolog	99.51
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.5
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.49
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.49
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.47
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.46
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.44
PRK08999	312	hypothetical protein; Provisional	99.41
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.39
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.39
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.35
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.34
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.33
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.31
PLN03143	291	nudix hydrolase; Provisional	99.3
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.29
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.2
PLN02839	372	nudix hydrolase	99.17
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.13
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.0
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.93
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.88
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.8
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.4
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.31
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	98.19
KOG4195	275	consensus Transient receptor potential-related cha	97.81
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	97.73
PRK10880	350	adenine DNA glycosylase; Provisional	97.55
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	96.14
COG4112	203	Predicted phosphoesterase (MutT family) [General f	95.92
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	95.22
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	93.88
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	93.23
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	92.59
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	88.09
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	87.73
PF14443	126	DBC1: DBC1	85.17
PRK13910	289	DNA glycosylase MutY; Provisional	83.34

>PLN02709 nudix hydrolase

Probab=100.00  E-value=7e-41  Score=289.67  Aligned_cols=185  Identities=60%  Similarity=1.043  Sum_probs=159.6

Q ss_pred             CccceeEEEEEeecC---CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh
Q 025031           64 RPKKAAVLVCLFEGD---NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE  140 (259)
Q Consensus        64 ~~r~aaVli~l~~~~---~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~  140 (259)
                      ..|+|||+|+|+...   +++++|||++|+.++++|+|+|+||||++|++|.++.+||+||++||+||++..++++|.++
T Consensus        30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~  109 (222)
T PLN02709         30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLE  109 (222)
T ss_pred             CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecC
Confidence            458899999998742   35789999999999999999999999999999868899999999999999999999999999


Q ss_pred             hhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeecc--CceEEee
Q 025031          141 PFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQK--NKKYLIW  218 (259)
Q Consensus       141 ~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~--~~~~~IW  218 (259)
                      .+.+..++.|+|||+.+.....+.+.+|++||+++||+|+++|+++.+++...+.|.|..+.+|+|.|..+  ..++.||
T Consensus       110 ~~~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~IW  189 (222)
T PLN02709        110 PFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIW  189 (222)
T ss_pred             CeECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEeccCCCCCCEEE
Confidence            88888899999999999764455666899999999999999999999877666677788888999987321  1368999


Q ss_pred             ehhHhhhhhhceeeeeCCCccccCCCCCCC
Q 025031          219 GITAAILVRAASVVYQKPPAFEEGNPKFKF  248 (259)
Q Consensus       219 GlTa~il~~~~~~~~~~~p~~~e~~~~~~~  248 (259)
                      |+||+||.+++.+++++.|+|....+.++-
T Consensus       190 G~TA~IL~~l~~~~~~~~~~~~~~~~~~~~  219 (222)
T PLN02709        190 ALTAGILIRVASIVYQRLPEFQERKPRFWN  219 (222)
T ss_pred             cHHHHHHHHHHHHHhccCCCcccccccccc
Confidence            999999999999999999999655555443

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=100.00  E-value=5.7e-34  Score=243.86  Aligned_cols=222  Identities=31%  Similarity=0.418  Sum_probs=170.1

Q ss_pred             HHHHHhhccCCCCCC-hHHHHHHHHHhcCceeeeeccccccccccccccccCccceeEEEEEeecCCCceEEEEeecccc
Q 025031           14 VIAQHLRDYKGPPST-YDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASR   92 (259)
Q Consensus        14 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~   92 (259)
                      .++|+.+.++|+... .+.....+           +..  ..+.......+..+.+||+|+|+..++|+++|||+||+.+
T Consensus         2 ~l~~~~~~s~p~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~   68 (246)
T KOG3069|consen    2 SLAQLQLLSSPCLVSTSNDPKRLL-----------GPA--TIISKSETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRT   68 (246)
T ss_pred             chhhHHHhcCCCccccccchhhhc-----------Chh--hhhhhcccccCCCCCccEEEEEEEcCCCceEEEEEecccc
Confidence            468888888887755 33332211           000  0011122233466899999999997778899999999999


Q ss_pred             cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc-CCCCCCccc
Q 025031           93 LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA-FKPTPNPGE  171 (259)
Q Consensus        93 ~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~-~~~~~~~~E  171 (259)
                      ++.|+|++|||||++|+.|.+..+||+||++||+|++++.+.+++.++++....+..|.|+++.+.+... ...++|.+|
T Consensus        69 LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gE  148 (246)
T KOG3069|consen   69 LRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGE  148 (246)
T ss_pred             ccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecccccccccCCchh
Confidence            9999999999999999999899999999999999999999999999999988888899999999887532 456889999


Q ss_pred             hhhhcccchhhhcccchhhHHHHhhcccceeeeeeeee--ccCceEEeeehhHhhhhhhceeeeeCCCccccCCCCCCC
Q 025031          172 VEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYE--QKNKKYLIWGITAAILVRAASVVYQKPPAFEEGNPKFKF  248 (259)
Q Consensus       172 v~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~--~~~~~~~IWGlTa~il~~~~~~~~~~~p~~~e~~~~~~~  248 (259)
                      |.++||||+++|+.+.+.+..+....+......++.|-  .....+.+||+|+.||.++..++++..+.+....++|+.
T Consensus       149 v~~~F~VPL~~ll~~~~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~iT~~Il~~~~~~l~~~l~~~~~~~~~h~l  227 (246)
T KOG3069|consen  149 VESAFWVPLTDLLLPKHQTAFQISRSYYRTYFFFIEYFFIWGVTNLFLWGITHGILGDLPNFLSPSLLTSLPYFQKHDL  227 (246)
T ss_pred             eeeeeeeeHHHHhhhhcchHHHHhhhhhccchhhheeehhccCcchhhHHHHHHHHhcchhhcCchhhhcccccccccc
Confidence            99999999999999988765443333322222122221  123457899999999999999999988887766666655

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=100.00  E-value=3.1e-33  Score=238.52  Aligned_cols=161  Identities=32%  Similarity=0.481  Sum_probs=136.3

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      ..+.|||++++..+++  ..|||++|+...+.|+|+|+||||++|++|+++++||+||++||||+.+..+.+++.+....
T Consensus        28 ~~~~aavvl~l~~~~~--~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~  105 (190)
T PRK10707         28 NQRQAAVLIPIVRRPQ--PTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVD  105 (190)
T ss_pred             cCCCeEEEEEEEECCC--CEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeee
Confidence            4567888888876433  39999999999889999999999999997658999999999999999999999999988766


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHh
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAA  223 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~  223 (259)
                      +..++.++++++.+....  ...+|++|+.+++|+|++++.+..++....+.+.|..+.+++|.|    +++.|||+||+
T Consensus       106 ~~~~~~~~~~v~~~~~~~--~~~~d~~Ev~~v~~vpl~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iWG~Ta~  179 (190)
T PRK10707        106 SSTGYQVTPVVGIIPPDL--PYRANEDEVAAVFEMPLAEALHLGRYHPLDIYRRGQSHRVWLSWY----EQYFVWGMTAG  179 (190)
T ss_pred             ccCCcEEEEEEEEECCCC--CCCCChhhhheEEEEeHHHHhCcccceeEEEeeCCcEEEEEEEEe----CCcEEEhHHHH
Confidence            667888999999887543  345688999999999999999987765555667787788899988    46899999999


Q ss_pred             hhhhhceee
Q 025031          224 ILVRAASVV  232 (259)
Q Consensus       224 il~~~~~~~  232 (259)
                      ||.+++..+
T Consensus       180 il~~~~~~~  188 (190)
T PRK10707        180 IIRELALQI  188 (190)
T ss_pred             HHHHHHHHh
Confidence            999987653

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.97  E-value=2.1e-30  Score=214.45  Aligned_cols=156  Identities=44%  Similarity=0.719  Sum_probs=121.4

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCC-CCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEG-DEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS  144 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~g-E~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~  144 (259)
                      |++||+|++++. +++.+|||++|+..+..++|.|+||||++|.| | ++.+||+||++||||++...+..++.+..+..
T Consensus         1 ~~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdE-s~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~   78 (157)
T cd03426           1 RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDE-DPVATALREAEEEIGLPPDSVEVLGRLPPYYT   78 (157)
T ss_pred             CceEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcC-CHHHHHHHHHHHHhCCCccceEEEEECCCccc
Confidence            568999998874 44459999999998777999999999999999 8 99999999999999999998888888776555


Q ss_pred             hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHhh
Q 025031          145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAI  224 (259)
Q Consensus       145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~i  224 (259)
                      ..+..+++|++.+...  ..+.++++|+.++.|+|++++.+..+.......+.+ ....+++.++.  .++.|||+||||
T Consensus        79 ~~~~~v~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iwg~t~~i  153 (157)
T cd03426          79 RSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLDPANPRTTRRHGRG-GLTFPAFALPG--EGYVIWGLTARI  153 (157)
T ss_pred             cCCCEEEEEEEEECCC--CCCCCCHHHhheeEEEcHHHHhCcCCceEEEEEeCC-ceEEEEEEecC--CCcEEEhHHHHH
Confidence            5566778888876543  234678889999999999999987654322223322 12244555542  368999999999


Q ss_pred             hhhh
Q 025031          225 LVRA  228 (259)
Q Consensus       225 l~~~  228 (259)
                      |.++
T Consensus       154 ~~~~  157 (157)
T cd03426         154 LSEL  157 (157)
T ss_pred             HhhC
Confidence            9874

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.5e-19  Score=145.72  Aligned_cols=120  Identities=23%  Similarity=0.153  Sum_probs=87.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhH
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFL  143 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~  143 (259)
                      +.||.+.|++..+++.+||+++|+..+..++|.|++ |||++++|| ++.+||+||++|||||.+.  .+..++.+....
T Consensus         2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gE-t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~   80 (144)
T cd04692           2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGE-TPLEDGIRELEEELGLDVSADDLIPLGTFKIEY   80 (144)
T ss_pred             ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCC-CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence            457888888865555699999999987889999999 599999999 9999999999999999764  455566554322


Q ss_pred             h-h----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          144 S-K----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       144 ~-~----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                      . .    .....+.|++..... ...+.++++|+.++.|+|++++.+.-.
T Consensus        81 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~  129 (144)
T cd04692          81 DHIGKLIDREFHHVYLYELKVP-LEEFTLQKEEVAGVVLIPLDEFAELLE  129 (144)
T ss_pred             cccCCCccceEEEEEEEeccCC-hhhcCCChhHhheEEEECHHHHHHHHH
Confidence            2 1    111234455544321 123456778999999999999976543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=1.5e-18  Score=137.27  Aligned_cols=110  Identities=18%  Similarity=0.278  Sum_probs=79.4

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--h
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--Y  146 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~  146 (259)
                      +|.+++++ .++  +|||++|+..  ..+|.|+||||++|+|| ++.+||+||++||||+.+....+++........  .
T Consensus         4 ~~~~~i~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   77 (125)
T cd04679           4 GCGAAILR-DDG--KLLLVKRLRA--PEAGHWGIPGGKVDWME-AVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQ   77 (125)
T ss_pred             EEEEEEEC-CCC--EEEEEEecCC--CCCCeEeCCeeeccCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCC
Confidence            45555555 345  8999999864  45799999999999999 999999999999999999888888776544322  1


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ......|++......  ....+++|+.++.|++++++.+.
T Consensus        78 ~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~~  115 (125)
T cd04679          78 HWVAPVYLAENFSGE--PRLMEPDKLLELGWFALDALPQP  115 (125)
T ss_pred             eEEEEEEEEeecCCc--cccCCCccccEEEEeCHHHCCch
Confidence            222223444433221  11245679999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.6e-18  Score=137.98  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=81.8

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      ||.|++++ .+|  +|||++|+.....++|.|++ |||+++.|| ++.+||+||++|||||++..+..++.+........
T Consensus         2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE-~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~   77 (126)
T cd04697           2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGE-SYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNR   77 (126)
T ss_pred             eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCC-CHHHHHHHHHHHHHCCCccccEEeeEEEecCCCce
Confidence            56677776 455  89999999887778999999 699999999 99999999999999999987777766543221112


Q ss_pred             ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      ...+.|.+...    ....++++|+.++.|++++++.+
T Consensus        78 ~~~~~f~~~~~----~~~~~~~~E~~~~~w~~~~el~~  111 (126)
T cd04697          78 VWGKVFSCVYD----GPLKLQEEEVEEITWLSINEILQ  111 (126)
T ss_pred             EEEEEEEEEEC----CCCCCCHhHhhheEEcCHHHHHH
Confidence            22233434332    23346778999999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=3e-18  Score=134.77  Aligned_cols=98  Identities=22%  Similarity=0.297  Sum_probs=74.8

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|+.....++|.|+||||++|+|| ++.+||.||++||||+.+..+..++.+..... ....++.|++....   
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~---   86 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGE-SQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYYVVTFWQ---   86 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEEEEEEec---
Confidence            89999998875568999999999999999 99999999999999999777776666543222 23334455544322   


Q ss_pred             CCCCCCccchhhhcccchhhhcccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..  ++.+|+.++.|+|++++....
T Consensus        87 ~~--~~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          87 GE--IPAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             CC--CCcccccccEEcCHHHcchhh
Confidence            12  244899999999999997543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=3e-18  Score=135.33  Aligned_cols=103  Identities=24%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             EEEEeecccc-cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeeccc
Q 025031           83 RVILTKRASR-LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRK  161 (259)
Q Consensus        83 ~vLL~kRs~~-~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~  161 (259)
                      +|||++|+.. ...++|.|+||||+++.|| ++.+||.||++||||+.+....+...............+.|++......
T Consensus        13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~   91 (122)
T cd04682          13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGE-TPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVPLTARE   91 (122)
T ss_pred             EEEEEEccCCCCCCCCCcEeCCCccccCCC-CHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEEEEEEecCC
Confidence            8999999986 5678999999999999999 9999999999999999876433221111111122333445555544322


Q ss_pred             cCCCCCCccchhhhcccchhhhcccch
Q 025031          162 AFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       162 ~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                        ....+.+|+.++.|++++++.+..+
T Consensus        92 --~~~~~~~E~~~~~W~~~~el~~~~~  116 (122)
T cd04682          92 --DAILFGDEGQALRLMTVEEFLAHED  116 (122)
T ss_pred             --CccccCchhheeecccHHHHhhccc
Confidence              2346779999999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=3.1e-18  Score=136.17  Aligned_cols=108  Identities=21%  Similarity=0.316  Sum_probs=81.2

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      +||.+++++ .++  +|||++|+..  .++|.|+||||+++.|| ++.+||.||++||||+++..+..++.....+...+
T Consensus         2 ~av~~~i~~-~~~--~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   75 (130)
T cd04681           2 AAVGVLILN-EDG--ELLVVRRARE--PGKGTLDLPGGFVDPGE-SAEEALIREIREETGLKVTELSYLFSLPNTYPYGG   75 (130)
T ss_pred             ceEEEEEEc-CCC--cEEEEEecCC--CCCCcEeCCceeecCCC-CHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC
Confidence            678887776 445  8999999865  46799999999999999 99999999999999999988888877643322122


Q ss_pred             cee----eeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031          148 LRV----VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL  184 (259)
Q Consensus       148 ~~v----~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell  184 (259)
                      ..+    ..|++.+...   ....+.+|+.++.|++++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          76 MEYDTLDLFFVCQVDDK---PIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             ceeEEEEEEEEEEeCCC---CCcCChHHhheeEEecHHHCC
Confidence            211    2344554332   234567899999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.74  E-value=6.6e-18  Score=135.58  Aligned_cols=114  Identities=24%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      .+|.+++++. ++  ++||++|... ...++.|+||||++|.|| ++.+||+||++||||+....+..++.+........
T Consensus         3 ~~v~v~~~~~-~~--~iLl~~~~~~-~~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   77 (137)
T cd03424           3 DAVAVLPYDD-DG--KVVLVRQYRP-PVGGWLLELPAGLIDPGE-DPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSD   77 (137)
T ss_pred             CEEEEEEEcC-CC--eEEEEEeeec-CCCCEEEEeCCccCCCCC-CHHHHHHHHHHHHHCCCccceEEEeeEecCCcccC
Confidence            4666666663 35  8999887654 245789999999999999 99999999999999999987777776543322233


Q ss_pred             ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..++.|++...... ..+..+++|+.++.|++++++.+.-
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~  116 (137)
T cd03424          78 ERIHLFLAEDLSPG-EEGLLDEGEDIEVVLVPLDEALELL  116 (137)
T ss_pred             ccEEEEEEEccccc-ccCCCCCCCeeEEEEecHHHHHHHH
Confidence            45666776655432 1135677899999999999998643

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=1.4e-17  Score=130.55  Aligned_cols=110  Identities=25%  Similarity=0.282  Sum_probs=75.8

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHhh-
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLSK-  145 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~~-  145 (259)
                      ||.+++++  +|  +|||++|... +.++|.|+||||+++.|| ++.+||.||++|||||.+.  .+..++.+...... 
T Consensus         2 ~v~~vi~~--~~--~vLL~~r~~~-~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~   75 (120)
T cd04683           2 AVYVLLRR--DD--EVLLQRRANT-GYMDGQWALPAGHLEKGE-DAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI   75 (120)
T ss_pred             cEEEEEEE--CC--EEEEEEccCC-CCCCCeEeCCccccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC
Confidence            56665665  24  8999999865 345899999999999999 9999999999999999876  55566654433221 


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......|.+.....  .....+++|+.++.|+|++++...
T Consensus        76 ~~~~~~~f~~~~~~~--~~~~~~~~e~~~~~W~~~~~l~~~  114 (120)
T cd04683          76 ESRIGLFFTVRRWSG--EPRNCEPDKCAELRWFPLDALPDD  114 (120)
T ss_pred             ceEEEEEEEEEeecC--ccccCCCCcEeeEEEEchHHCcch
Confidence            112222233322211  111235678999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=9.4e-18  Score=133.24  Aligned_cols=110  Identities=24%  Similarity=0.241  Sum_probs=76.2

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhHhh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFLSK  145 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~~~  145 (259)
                      +|.+++++ ++|  +|||++|+..+..++|.|+|| ||+++.|| ++ +||+||++||||+++...  ..++.+.... .
T Consensus         2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE-~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~-~   75 (127)
T cd04693           2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGE-TS-TAAEREVKEELGLELDFSELRPLFRYFFEA-E   75 (127)
T ss_pred             eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCC-CH-HHHHHHHHHHhCCCcChhhcEEEEEEEeec-C
Confidence            56666666 345  899999998877789999998 99999999 99 999999999999987633  3333322111 1


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                       +.... +++.... ......++.+|+.++.|++++++.+.-
T Consensus        76 -~~~~~-~~~~~~~-~~~~~~~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04693          76 -GFDDY-YLFYADV-EIGKLILQKEEVDEVKFVSKDEIDGLI  114 (127)
T ss_pred             -CeEEE-EEEEecC-cccccccCHHHhhhEEEeCHHHHHHHH
Confidence             22111 1222221 122345677899999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.72  E-value=1.4e-17  Score=133.61  Aligned_cols=106  Identities=21%  Similarity=0.209  Sum_probs=81.1

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL  148 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~  148 (259)
                      +|+++++++ ++  +|||++|...   .+|.|+||||+++.|| ++.+||+||++|||||....+..++.......  ..
T Consensus         2 ~v~i~l~~~-~~--~vLL~~r~~~---~~~~w~lPgG~ie~gE-t~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~   72 (131)
T cd03429           2 AVIVLVIDG-GD--RILLARQPRF---PPGMYSLLAGFVEPGE-SLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP--SS   72 (131)
T ss_pred             eEEEEEEeC-CC--EEEEEEecCC---CCCcCcCCcccccCCC-CHHHHHhhhhhhccCceeeeeEEEeecCCCCC--ce
Confidence            577777663 34  8999998753   3789999999999999 99999999999999999988888776432211  22


Q ss_pred             eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .++.|++.+..   .....+++|+.++.|+|++++.+.
T Consensus        73 ~~~~f~~~~~~---~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          73 LMLGFTAEADS---GEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEEEEEEcC---CcccCCchhhhccEeecHHHHhhc
Confidence            34456666543   234567789999999999998875

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2.8e-17  Score=130.38  Aligned_cols=112  Identities=22%  Similarity=0.307  Sum_probs=77.4

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      .+|.+++++ .++  +|||++|...   ++|.|.||||++|.|| |+.+||+||++||||+.......++..........
T Consensus         3 ~~~~~~v~~-~~~--~vLl~~r~~~---~~~~w~~PGG~ve~gE-t~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   75 (127)
T cd04670           3 VGVGGLVLN-EKN--EVLVVQERNK---TPNGWKLPGGLVDPGE-DIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFG   75 (127)
T ss_pred             eEEEEEEEc-CCC--eEEEEEccCC---CCCcEECCCccCCCCC-CHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcC
Confidence            345555555 334  8999987653   6799999999999999 99999999999999999876666654322111112


Q ss_pred             ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      .....|++.+... ...+..+++|+.++.|++++++.+..
T Consensus        76 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04670          76 KSDLYFICRLKPL-SFDINFDTSEIAAAKWMPLEEYISQP  114 (127)
T ss_pred             ceeEEEEEEEccC-cCcCCCChhhhheeEEEcHHHHhcch
Confidence            2223344444322 22345567899999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2.9e-17  Score=134.18  Aligned_cols=115  Identities=25%  Similarity=0.280  Sum_probs=80.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce----eeeeehhhhH
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV----DVVTVIEPFL  143 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i----~~l~~l~~~~  143 (259)
                      ++|.|++++ .++  +|||+||+..+..++|.|+||||+++++| ++.+||+||+.||+|+.+...    .+++.....+
T Consensus         2 ~~v~viv~~-~~~--~vLl~rr~~~~~~~~g~w~~PgG~v~~~E-~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~   77 (143)
T cd04694           2 VGVAVLLQS-SDQ--KLLLTRRASSLRIFPNVWVPPGGHVELGE-NLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVY   77 (143)
T ss_pred             cEEEEEEEc-CCC--EEEEEEECCCCCCCCCeEECcccccCCCC-CHHHHHHHHHHHHHCCCccccccceeEEeeecccc
Confidence            466676666 345  89999999886689999999999999999 999999999999999987653    4555443221


Q ss_pred             hh---h----cceeeeEeeEeecc----ccCCCCCCccchhhhcccchhhhccc
Q 025031          144 SK---Y----LLRVVPVIGILHNR----KAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~---~----~~~v~~~v~~~~~~----~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..   .    ...+..|++.....    ....+.++++|++++.|++++++..-
T Consensus        78 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          78 PPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             ccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence            10   0    11233333322211    11123567799999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.71  E-value=2.6e-17  Score=133.17  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=71.9

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee-ehh-h----h
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT-VIE-P----F  142 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~-~l~-~----~  142 (259)
                      +|++.++.+ ++  +|||+||+..++.++|.|+||||++|+|| |+.+||+||++|||||.+....+.. .+. .    .
T Consensus         5 ~~~~~ii~~-~~--~vLl~~R~~~~~~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (141)
T PRK15472          5 TIVCPLIQN-DG--AYLLCKMADDRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLLLTEITPWTFRDDIRTKT   80 (141)
T ss_pred             eEEEEEEec-CC--EEEEEEecccCCCCCCceeCCcccCCCCC-CHHHHHHHHHHHHHCCceeeeeeccccccccceeEE
Confidence            344434442 35  89999999877789999999999999999 9999999999999999764332211 000 0    0


Q ss_pred             H-hhh--cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          143 L-SKY--LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       143 ~-~~~--~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      + ...  ...+..+++.... ......++ +|+.++.|++++++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~E~~~~~w~~~~el~~l~  126 (141)
T PRK15472         81 YADGRKEEIYMIYLIFDCVS-ANRDVKIN-EEFQDYAWVKPEDLVHYD  126 (141)
T ss_pred             ecCCCceeEEEEEEEEEeec-CCCcccCC-hhhheEEEccHHHhcccc
Confidence            0 001  0111111222211 11222333 799999999999997643

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=4.4e-17  Score=129.48  Aligned_cols=114  Identities=26%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      .+|.++|++. +|  +|||++|...  ..+|.|.+|||+++.|| ++.+||.||++||||+++..+..++.........+
T Consensus         3 ~~v~~ii~~~-~~--~iLl~~r~~~--~~~~~w~~PGG~ve~gE-t~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~   76 (129)
T cd04678           3 VGVGVFVLNP-KG--KVLLGKRKGS--HGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTVTNDVFEEEG   76 (129)
T ss_pred             eEEEEEEECC-CC--eEEEEeccCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCC
Confidence            5666767763 45  8999999864  56799999999999999 99999999999999999888777776543322122


Q ss_pred             --ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          148 --LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       148 --~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                        .....|.+.+..........+++|+.++.|++++++.+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  118 (129)
T cd04678          77 KHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD  118 (129)
T ss_pred             cEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence              2233344444332111111256789999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.71  E-value=3e-17  Score=136.35  Aligned_cols=112  Identities=16%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHhh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLSK  145 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~~  145 (259)
                      .+|.+++.+ .+|  +|||+||+..  +.+|+|+||||++|.|| |+.+||+||++|||||.+.  ...+++....++..
T Consensus        18 ~~v~~vI~~-~~g--~VLL~kR~~~--~~~g~W~lPGG~VE~GE-t~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~   91 (159)
T PRK15434         18 ISLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD   91 (159)
T ss_pred             EEEEEEEEC-CCC--EEEEEEccCC--CCCCcEECCceecCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEeeccc
Confidence            456665554 345  8999999853  56899999999999999 9999999999999999864  23455543322211


Q ss_pred             --------hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          146 --------YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       146 --------~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                              ..+.+..|.+.+..   ..+.+.++|+.++.|++++++.....
T Consensus        92 ~~~~~~~~~~~i~~~f~~~~~~---g~~~~~~~E~~~~~W~~~~el~~~~~  139 (159)
T PRK15434         92 NFSGTDFTTHYVVLGFRLRVAE---EDLLLPDEQHDDYRWLTPDALLASDN  139 (159)
T ss_pred             ccCCCccceEEEEEEEEEEecC---CcccCChHHeeEEEEEeHHHhhhccc
Confidence                    11233344444332   23445667999999999999987544

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=3.5e-17  Score=130.18  Aligned_cols=109  Identities=27%  Similarity=0.278  Sum_probs=79.2

Q ss_pred             EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh--hH--hh
Q 025031           70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP--FL--SK  145 (259)
Q Consensus        70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~--~~--~~  145 (259)
                      |.|++++.. ++.+|||++|+..   ++|.|.+|||+++.|| ++.+||+||++|||||.+..+..+.....  ++  ..
T Consensus         4 ~~v~~~~~~-~~~~vLL~~r~~~---~~~~w~~PgG~ve~~E-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04664           4 VLVVPYRLT-GEGRVLLLRRSDK---YAGFWQSVTGGIEDGE-SPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD   78 (129)
T ss_pred             EEEEEEEeC-CCCEEEEEEeCCC---CCCcccccCcccCCCC-CHHHHHHHHHHHHHCCChhheEEEeecccccccccCC
Confidence            445555531 1238999999875   7899999999999999 99999999999999999877777665542  11  11


Q ss_pred             --hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 --YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                        ....++.|++.+....   ....++|+.++.|++++++.+.
T Consensus        79 ~~~~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~  118 (129)
T cd04664          79 NGRVWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAAL  118 (129)
T ss_pred             CceEEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHHH
Confidence              2244566776655421   1234579999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=4.7e-17  Score=132.84  Aligned_cols=112  Identities=26%  Similarity=0.338  Sum_probs=80.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh-----
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF-----  142 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~-----  142 (259)
                      .+|.+++++ .++  +|||++|+...    |.|+||||++|+|| ++.+||+||++||||+.+....+++.....     
T Consensus         4 ~~v~~ii~~-~~~--~vLL~~r~~~~----~~W~~PgG~~e~gE-~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~   75 (147)
T cd03671           4 PNVGVVLFN-EDG--KVFVGRRIDTP----GAWQFPQGGIDEGE-DPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL   75 (147)
T ss_pred             ceEEEEEEe-CCC--EEEEEEEcCCC----CCEECCcCCCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeC
Confidence            455565665 345  89999998762    89999999999999 999999999999999998888887764211     


Q ss_pred             Hh----------hhcceeeeEeeEeecc-ccCCCCC-Cccchhhhcccchhhhcccc
Q 025031          143 LS----------KYLLRVVPVIGILHNR-KAFKPTP-NPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       143 ~~----------~~~~~v~~~v~~~~~~-~~~~~~~-~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..          ..+..++.|++.+... ....... +.+|+.++.|+|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~  132 (147)
T cd03671          76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI  132 (147)
T ss_pred             hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence            10          0122356666666541 1222223 25799999999999998754

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PLN02325 nudix hydrolase

Probab=99.70  E-value=5.5e-17  Score=132.49  Aligned_cols=114  Identities=25%  Similarity=0.318  Sum_probs=80.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-  145 (259)
                      +.+|.++++++  +  +|||++|+..  ...|.|++|||++|.|| |+.+||+||++||||+.+...++++..+..... 
T Consensus         9 ~~~v~~vi~~~--~--~vLL~rr~~~--~~~g~W~lPGG~ve~gE-s~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~   81 (144)
T PLN02325          9 RVAVVVFLLKG--N--SVLLGRRRSS--IGDSTFALPGGHLEFGE-SFEECAAREVKEETGLEIEKIELLTVTNNVFLEE   81 (144)
T ss_pred             eEEEEEEEEcC--C--EEEEEEecCC--CCCCeEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence            45555555552  4  8999999864  44689999999999999 999999999999999999988888876543211 


Q ss_pred             ---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          146 ---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       146 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                         ..+....|.+.+.+........+++|+.++.|+++++|....
T Consensus        82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~  126 (144)
T PLN02325         82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPL  126 (144)
T ss_pred             CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhh
Confidence               112222334444332211223456778889999999997643

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=3.4e-17  Score=128.22  Aligned_cols=108  Identities=28%  Similarity=0.415  Sum_probs=78.1

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh---
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK---  145 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~---  145 (259)
                      +|.++++++  +  +|||++|...  .++|.|.||||+++.|| ++++||.||++||||+.+.....++.+......   
T Consensus         2 ~v~~ii~~~--~--~vLl~~r~~~--~~~~~w~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   74 (122)
T cd04673           2 AVGAVVFRG--G--RVLLVRRANP--PDAGLWSFPGGKVELGE-TLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAG   74 (122)
T ss_pred             cEEEEEEEC--C--EEEEEEEcCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCC
Confidence            444555553  4  8999999864  56899999999999999 999999999999999998777777766544311   


Q ss_pred             ---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          146 ---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       146 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                         ....++.|++.....   .. .+.+|+.++.|++++++.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~-~~~~E~~~~~w~~~~el~~~~  115 (122)
T cd04673          75 RVEFHYVLIDFLCRYLGG---EP-VAGDDALDARWVPLDELAALS  115 (122)
T ss_pred             ccceEEEEEEEEEEeCCC---cc-cCCcccceeEEECHHHHhhCc
Confidence               122333444443321   22 345799999999999998643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=3.5e-17  Score=138.13  Aligned_cols=122  Identities=25%  Similarity=0.302  Sum_probs=86.8

Q ss_pred             ccCccceeEEEEEe-ecCCCceEEEEeeccccccccccee-ecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee---ee
Q 025031           62 TFRPKKAAVLVCLF-EGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD---VV  136 (259)
Q Consensus        62 ~~~~r~aaVli~l~-~~~~g~~~vLL~kRs~~~~~~~G~w-sfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~---~l  136 (259)
                      ..+..+.||.|.++ .+.+++.+|+++||+.++..+||.| .+|||+++.|| ++.+||+||++|||||+...+.   .+
T Consensus        27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE-~~~~aA~REl~EE~Gl~~~~~~~l~~~  105 (180)
T cd03676          27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE-GPEETLVKECDEEAGLPEDLVRQLKPV  105 (180)
T ss_pred             cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC-CHHHHHHHHHHHHhCCCHHHHhhceec
Confidence            44677788887433 3333245999999999999999999 58999999999 9999999999999999877643   33


Q ss_pred             eehhhhHh--hh---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          137 TVIEPFLS--KY---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       137 ~~l~~~~~--~~---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      +.+.....  ..   ...++.|.+.+..  ...+.++++||.++.|++++++.+.
T Consensus       106 g~~~~~~~~~~~~~~~e~~~~f~~~~~~--~~~~~~~~~Ev~~~~~~~~~el~~~  158 (180)
T cd03676         106 GVVSYLREGEAGGLQPEVEYVYDLELPP--DFIPAPQDGEVESFRLLTIDEVLRA  158 (180)
T ss_pred             cEEEEEEEcCCCcEeeeEEEEEEEEcCC--CCeeCCCCCcEeEEEEECHHHHHHH
Confidence            33322221  11   1223444444322  2234668899999999999999864

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=3.9e-17  Score=129.25  Aligned_cols=110  Identities=29%  Similarity=0.289  Sum_probs=77.7

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh---
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS---  144 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~---  144 (259)
                      +|..|++.. .+++.+|||++|...     |.|+||||+++.|| ++.+||.||++||||+.+..+..++.......   
T Consensus         3 ~a~~ii~~~-~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   75 (131)
T cd03673           3 AAGGVVFRG-SDGGIEVLLIHRPRG-----DDWSLPKGKLEPGE-TPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG   75 (131)
T ss_pred             eEEEEEEEc-cCCCeEEEEEEcCCC-----CcccCCCCccCCCC-CHHHHHHHHHhhhhCCceEecceEEEEEEeccCCC
Confidence            344444433 333459999999754     79999999999999 99999999999999999888777776543322   


Q ss_pred             -hhcceeeeEeeEeeccccCCCCC-Cccchhhhcccchhhhcccc
Q 025031          145 -KYLLRVVPVIGILHNRKAFKPTP-NPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       145 -~~~~~v~~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~ell~~~  187 (259)
                       .....++.|++.....   .... +.+|+.++.|+|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~  117 (131)
T cd03673          76 KRVHKTVHWWLMRALGG---EFTPQPDEEVDEVRWLPPDEARDRL  117 (131)
T ss_pred             CCcceEEEEEEEEEcCC---CcccCCCCcEEEEEEcCHHHHHHHc
Confidence             1223344455444322   2222 56899999999999997543

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.69  E-value=5.1e-17  Score=132.58  Aligned_cols=110  Identities=22%  Similarity=0.272  Sum_probs=79.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhHh-
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFLS-  144 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~~-  144 (259)
                      .+|.+++++ .+|  +|||++|...  +++|.|+||||++|.|| |+.+||+||++||||+.+...  .+++.+..... 
T Consensus        13 v~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~lPGG~ve~gE-s~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~   86 (144)
T cd03430          13 VSIDLIVEN-EDG--QYLLGKRTNR--PAQGYWFVPGGRIRKNE-TLTEAFERIAKDELGLEFLISDAELLGVFEHFYDD   86 (144)
T ss_pred             EEEEEEEEe-CCC--eEEEEEccCC--CCCCcEECCCceecCCC-CHHHHHHHHHHHHHCCCcccccceEEEEEEEEecc
Confidence            466666665 345  8999999864  57899999999999999 999999999999999988755  66665543221 


Q ss_pred             ---hh----cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 ---KY----LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 ---~~----~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         ..    ......|.+.+..   ......++|+.++.|++++++...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          87 NFFGDDFSTHYVVLGYVLKLSS---NELLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             ccccCCCccEEEEEEEEEEEcC---CcccCCchhccEeEEecHHHHhcC
Confidence               11    1222334444332   122456789999999999999864

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=4.5e-17  Score=127.30  Aligned_cols=106  Identities=22%  Similarity=0.255  Sum_probs=77.3

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc-ceeeeeehhhhHhhhc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS-LVDVVTVIEPFLSKYL  147 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~-~i~~l~~l~~~~~~~~  147 (259)
                      +|.+++++ .+|  +|||++|+..     +.|.||||+++.|| |+.+||+||++||||+.+. ....++.+........
T Consensus         2 ~~~~~i~~-~~~--~vLL~~r~~~-----~~w~~PgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~   72 (120)
T cd04680           2 GARAVVTD-ADG--RVLLVRHTYG-----PGWYLPGGGLERGE-TFAEAARRELLEELGIRLAVVAELLGVYYHSASGSW   72 (120)
T ss_pred             ceEEEEEC-CCC--eEEEEEECCC-----CcEeCCCCcCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEecCCCCCc
Confidence            45555565 345  8999998754     38999999999999 9999999999999999998 7777777654432222


Q ss_pred             ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..++.|.+.....   ....+.+|+.++.|+|++++.+.
T Consensus        73 ~~~~~f~~~~~~~---~~~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          73 DHVIVFRARADTQ---PVIRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             eEEEEEEecccCC---CccCCcccEEEEEEECHHHCccc
Confidence            3344444443321   11346689999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.69  E-value=7.3e-17  Score=127.21  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=77.6

Q ss_pred             EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-hh--
Q 025031           70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-KY--  146 (259)
Q Consensus        70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~~--  146 (259)
                      |..+++++  +  +|||++|+..  .++|.|+||||++|.|| ++.+||+||++||||+....+..++....... ..  
T Consensus         3 ~~~ii~~~--~--~vLl~~~~~~--~~~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   75 (128)
T cd04684           3 AYAVIPRD--G--KLLLIQKNGG--PYEGRWDLPGGGIEPGE-SPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD   75 (128)
T ss_pred             eEEEEEeC--C--EEEEEEccCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC
Confidence            44444552  4  8999999876  37899999999999999 99999999999999999888777777554321 11  


Q ss_pred             ---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 ---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         ....+.|.+....... ....+.+|+.++.|+|++++...
T Consensus        76 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          76 YDAHHLCVFYDARVVGGAL-PVQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             eeccEEEEEEEEEEecCcc-ccCCCCCCceeeEEECHHHhhcc
Confidence               1223344444443211 01345578899999999999754

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.68  E-value=5.5e-17  Score=134.41  Aligned_cols=117  Identities=24%  Similarity=0.212  Sum_probs=82.7

Q ss_pred             cCccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCccee--eeeeh
Q 025031           63 FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVD--VVTVI  139 (259)
Q Consensus        63 ~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~--~l~~l  139 (259)
                      .+..+.+|.+++++. +|  +|||+||+..+..+||.|++| ||+++.|| +  +||+||++|||||.+....  .++..
T Consensus        23 ~g~~h~~v~v~v~~~-~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-~--eaa~REl~EE~Gl~~~~~~l~~~~~~   96 (158)
T TIGR02150        23 ETPLHRAFSVFLFNE-EG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE-L--EAAIRRLREELGIPADDVPLTVLPRF   96 (158)
T ss_pred             CCCeEEEEEEEEEcC-CC--eEEEEeccCCCcCCCCCccccccCCCCccc-H--HHHHHHHHHHHCCCccccceEEcceE
Confidence            366788888888873 45  899999999888899999997 89999999 4  9999999999999887654  23322


Q ss_pred             hhhHh-hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          140 EPFLS-KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       140 ~~~~~-~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..... ..+.....+++.+....  .+.++++|++++.|++++++.+.-
T Consensus        97 ~~~~~~~~g~~~~~~~f~~~~~~--~~~~~~~Ev~~~~W~~~~el~~~~  143 (158)
T TIGR02150        97 SYRARDAWGEHELCPVFFARAPV--PLNPNPEEVAEYRWVSLEELKEIL  143 (158)
T ss_pred             EEEEecCCCcEEEEEEEEEecCC--cccCChhHeeeEEEeCHHHHHHHH
Confidence            21111 11222222333322221  345677899999999999987643

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.68  E-value=1.5e-16  Score=130.21  Aligned_cols=112  Identities=26%  Similarity=0.282  Sum_probs=80.2

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      ...+|.+++..+  +  +|||+||+..  ++.|.|+||||++|.|| |+++||+||++|||||++..+++++.++.....
T Consensus         9 p~~~v~~~i~~~--~--~iLLvrR~~~--p~~g~WalPGG~ve~GE-t~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd   81 (145)
T COG1051           9 PLVAVGALIVRN--G--RILLVRRANE--PGAGYWALPGGFVEIGE-TLEEAARRELKEETGLRVRVLELLAVFDDPGRD   81 (145)
T ss_pred             cceeeeEEEEeC--C--EEEEEEecCC--CCCCcEeCCCccCCCCC-CHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence            445666665553  3  8999999987  78899999999999999 999999999999999998888888887654321


Q ss_pred             -hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          146 -YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       146 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                       .+.++..++........ ....+.++...+.|++++++..
T Consensus        82 ~r~~~v~~~~~~~~~~g~-~~~~~~~d~~~~~~~~~~~l~~  121 (145)
T COG1051          82 PRGHHVSFLFFAAEPEGE-LLAGDGDDAAEVGWFPLDELPE  121 (145)
T ss_pred             CceeEEEEEEEEEecCCC-cccCChhhHhhcceecHhHccc
Confidence             22222222221111111 1123335888999999999985

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.68  E-value=5.6e-17  Score=135.11  Aligned_cols=114  Identities=24%  Similarity=0.233  Sum_probs=82.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCcceeee-eehhhhHh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVDVV-TVIEPFLS  144 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l-~~l~~~~~  144 (259)
                      +.+|.+++++ .++  +|||+||+..+..+||.|++| ||++|+|| ++++||+||++|||||.+.....+ +.+.....
T Consensus        30 ~~~v~v~i~~-~~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GE-t~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~  105 (165)
T cd02885          30 HRAFSVFLFN-SKG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGE-GVKDAAQRRLREELGITGDLLELVLPRFRYRAP  105 (165)
T ss_pred             eeEEEEEEEc-CCC--cEEEEeccCCCccCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccchhhccceEEEEEE
Confidence            7788887776 345  899999998877899999996 89999999 999999999999999998766654 33211110


Q ss_pred             h-h---cc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          145 K-Y---LL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       145 ~-~---~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                      . .   .. ..+.|.+...    ....++++|+.++.|+|++++.+.-.
T Consensus       106 ~~~~~~~~~i~~~f~~~~~----~~~~~~~~Ev~~~~w~~~~el~~~~~  150 (165)
T cd02885         106 DDGGLVEHEIDHVFFARAD----VTLIPNPDEVSEYRWVSLEDLKELVA  150 (165)
T ss_pred             cCCCceeeEEEEEEEEEeC----CCCCCCccceeEEEEECHHHHHHHHH
Confidence            0 1   11 1223333322    12345778999999999999986543

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.68  E-value=7.9e-17  Score=136.32  Aligned_cols=115  Identities=19%  Similarity=0.158  Sum_probs=81.9

Q ss_pred             CccceeEEEEEeecCCCceEEEEeeccccccccccee-ecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF  142 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~w-sfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~  142 (259)
                      +.++.+|.+++++ .+|  +|||++|+.....++|.| .+|||++++|| |+.+||+||++|||||....+..++.+.. 
T Consensus        34 ~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GE-s~~eAA~REL~EEtGl~~~~~~~~~~~~~-  108 (180)
T PRK15393         34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGE-QLLESARREAEEELGIAGVPFAEHGQFYF-  108 (180)
T ss_pred             CCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCccceeceeEEe-
Confidence            4466777777776 455  899999987766778987 58999999999 99999999999999998766655554321 


Q ss_pred             HhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          143 LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                       ......++..++.....  ....++++|+.++.|++++++.+.
T Consensus       109 -~~~~~~~~~~~f~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  149 (180)
T PRK15393        109 -EDENCRVWGALFSCVSH--GPFALQEEEVSEVCWMTPEEITAR  149 (180)
T ss_pred             -cCCCceEEEEEEEEEeC--CCCCCChHHeeEEEECCHHHHhhh
Confidence             11222222222222211  234567899999999999999864

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.68  E-value=1.2e-16  Score=130.30  Aligned_cols=110  Identities=19%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC--cceeeeeehh---
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP--SLVDVVTVIE---  140 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~--~~i~~l~~l~---  140 (259)
                      .+.+|.+++++ .+|  +|||++|...    +|.|++|||++|.|| |+.+||+||++|||||.+  ..+.+++...   
T Consensus         6 ~~~~v~~vi~~-~~~--~vLl~~r~~~----~~~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   77 (148)
T PRK09438          6 RPVSVLVVIYT-PDL--GVLMLQRADD----PDFWQSVTGSLEEGE-TPAQTAIREVKEETGIDVLAEQLTLIDCQRSIE   77 (148)
T ss_pred             CceEEEEEEEe-CCC--eEEEEEecCC----CCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcCccccceeecccccccc
Confidence            34567777776 345  7999988643    589999999999999 999999999999999988  4444332110   


Q ss_pred             h-hH-------hh--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          141 P-FL-------SK--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       141 ~-~~-------~~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      . +.       ..  .....+.|++.+..  ..  .++.+|+.++.|++++++.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~--~~~~~E~~~~~W~~~~e~~~~~  130 (148)
T PRK09438         78 YEIFPHWRHRYAPGVTRNTEHWFCLALPH--ER--PVVLTEHLAYQWLDAREAAALT  130 (148)
T ss_pred             cccchhhhhccccccCCceeEEEEEecCC--CC--ccccCcccceeeCCHHHHHHHh
Confidence            0 00       11  12234445554332  11  2344699999999999997643

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=9.8e-17  Score=128.35  Aligned_cols=110  Identities=23%  Similarity=0.247  Sum_probs=75.1

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh--
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY--  146 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~--  146 (259)
                      +|++.... .++  +|||++|+..   ++|.|++|||+++.|| |+.+||+||++|||||.+..+...+.+..++...  
T Consensus         4 ~v~~~~~~-~~~--~vLl~~r~~~---~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   76 (131)
T cd04695           4 GVLLRSLD-KET--KVLLLKRVKT---LGGFWCHVAGGVEAGE-TAWQAALRELKEETGISLPELYNADYLEQFYEANDN   76 (131)
T ss_pred             EEEEEEcC-CCC--EEEEEEecCC---CCCcEECCcccccCCC-CHHHHHHHHHHHHhCCCccccccccceeeEeecCCc
Confidence            44444443 233  8999999875   6799999999999999 9999999999999999887654333222222211  


Q ss_pred             -cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          147 -LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       147 -~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                       ...+..|++.+....  ...++ +|+.++.|++++++.+...
T Consensus        77 ~~~~~~~f~~~~~~~~--~~~~~-~E~~~~~W~~~~e~~~~~~  116 (131)
T cd04695          77 RILMAPVFVGFVPPHQ--EVVLN-HEHTEYRWCSFAEALELAP  116 (131)
T ss_pred             eEEEEEEEEEEecCCC--ccccC-chhcccEecCHHHHHHhcC
Confidence             122344555543321  12233 7999999999999987544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.67  E-value=1.3e-16  Score=129.76  Aligned_cols=114  Identities=19%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-  145 (259)
                      ..||.+++++ .++  +|||++|...  .++|.|+||||++++|| |+.+||+||++||||+.+.....++........ 
T Consensus        13 ~~av~~vv~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (142)
T cd04700          13 ARAAGAVILN-ERN--DVLLVQEKGG--PKKGLWHIPSGAVEDGE-FPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG   86 (142)
T ss_pred             eeeEEEEEEe-CCC--cEEEEEEcCC--CCCCeEECCceecCCCC-CHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence            3455555565 344  7899887643  46799999999999999 999999999999999998888777764322211 


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                      .....+.|++.+... ...+. ..+|+.++.|++++++.+...
T Consensus        87 ~~~~~~~f~~~~~~~-~~~~~-~~~E~~~~~w~~~~el~~~~~  127 (142)
T cd04700          87 VLVLRHVWLAEPEGQ-TLAPK-FTDEIAEASFFSREDVAQLYA  127 (142)
T ss_pred             cEEEEEEEEEEecCC-ccccC-CCCCEEEEEEECHHHhhhccc
Confidence            112234455555332 22222 237999999999999987543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1.5e-16  Score=126.48  Aligned_cols=113  Identities=27%  Similarity=0.261  Sum_probs=76.1

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh--H
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF--L  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~--~  143 (259)
                      ...+|.+++++. ++  +|||++|+..     |.|+||||++++|| |+.+||+||++||||+.......++.+...  +
T Consensus         6 ~~~~~~~~v~~~-~~--~vLL~~r~~~-----~~w~~PgG~v~~gE-t~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~   76 (132)
T cd04677           6 ILVGAGVILLNE-QG--EVLLQKRSDT-----GDWGLPGGAMELGE-SLEETARRELKEETGLEVEELELLGVYSGKEFY   76 (132)
T ss_pred             cccceEEEEEeC-CC--CEEEEEecCC-----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCeeeeeEEEEEecCCcee
Confidence            445666666663 34  8999998764     78999999999999 999999999999999998887777654211  1


Q ss_pred             h--hhcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          144 S--KYLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       144 ~--~~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      .  ..+. .....++++.......+..+.+|+.++.|+|++++.+.-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~  123 (132)
T cd04677          77 VKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELI  123 (132)
T ss_pred             ecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccch
Confidence            1  1111 111111222211122234566899999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=2e-16  Score=127.88  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=73.0

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeee------hh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV------IE  140 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~------l~  140 (259)
                      +.+|.+++++++.+  +|||++|+..     |.|++|||++|+|| ++.+||.||++|||||.+..+..++.      +.
T Consensus         2 ~~~~~~~v~~~~~~--~vLLv~r~~~-----~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   73 (138)
T cd03674           2 HFTASAFVVNPDRG--KVLLTHHRKL-----GSWLQPGGHIDPDE-SLLEAALRELREETGIELLGLRPLSVLVDLDVHP   73 (138)
T ss_pred             cEEEEEEEEeCCCC--eEEEEEEcCC-----CcEECCceecCCCC-CHHHHHHHHHHHHHCCCcccceeccccccceeEe
Confidence            44666666764224  8999998753     78999999999999 99999999999999998766554331      11


Q ss_pred             hhHhhh-----cc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          141 PFLSKY-----LL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       141 ~~~~~~-----~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .+....     .. ....|++.+... ...+ ++.+|+.++.|+|++++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~  123 (138)
T cd03674          74 IDGHPKRGVPGHLHLDLRFLAVAPAD-DVAP-PKSDESDAVRWFPLDELASL  123 (138)
T ss_pred             ecCCCCCCCCCcEEEEEEEEEEccCc-cccC-CCCCcccccEEEcHHHhhhc
Confidence            111100     11 112344443321 1111 36689999999999999653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.67  E-value=3.9e-17  Score=129.07  Aligned_cols=117  Identities=32%  Similarity=0.371  Sum_probs=87.0

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      +.+|.+++++ .++  +|||++|+.....++|.|.+|||+++.+| |+.+||+||+.||||+.......++.........
T Consensus         2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E-~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~   77 (134)
T PF00293_consen    2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPGE-SPEEAARRELKEETGLDVSPLELLGLFSYPSPSG   77 (134)
T ss_dssp             EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTTS-HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcCC-chhhhHHhhhhhcccceecccccceeeeecccCC
Confidence            4567776776 345  99999999875568899999999999999 9999999999999999986666555543332221


Q ss_pred             ---cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          147 ---LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       147 ---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                         +..++.|++.+.... .....+.+|+.++.|++++++.+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~~  121 (134)
T PF00293_consen   78 DPEGEIVIFFIAELPSEQ-SEIQPQDEEISEVKWVPPDELLELLL  121 (134)
T ss_dssp             ESSEEEEEEEEEEEEEEE-SECHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred             CcccEEEEEEEEEEeCCc-cccCCCCccEEEEEEEEHHHhhhchh
Confidence               245666666665532 12344555999999999999988654

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.66  E-value=2.9e-16  Score=125.84  Aligned_cols=97  Identities=25%  Similarity=0.230  Sum_probs=72.1

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--hcceeeeEeeEeecc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--YLLRVVPVIGILHNR  160 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~~~~v~~~v~~~~~~  160 (259)
                      +|||++|+...  ++|.|++|||++|.|| ++.+||+||++||||+......+++.+......  ....++.|++.....
T Consensus        13 ~vLL~~r~~~~--~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   89 (137)
T cd03427          13 KVLLLNRKKGP--GWGGWNGPGGKVEPGE-TPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG   89 (137)
T ss_pred             EEEEEEecCCC--CCCeEeCCceeCCCCC-CHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc
Confidence            89999999763  7899999999999999 999999999999999999888887776533222  223344444433221


Q ss_pred             ccCCCCCCccchhhhcccchhhhccc
Q 025031          161 KAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       161 ~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         .+. +.+|..++.|++++++.+.
T Consensus        90 ---~~~-~~~e~~~~~W~~~~el~~~  111 (137)
T cd03427          90 ---EPL-KESEEGILDWFDIDDLPLL  111 (137)
T ss_pred             ---ccC-CCCccccceEEcHhhcccc
Confidence               222 3456678999999998754

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.66  E-value=1.2e-16  Score=126.87  Aligned_cols=110  Identities=25%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH---
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL---  143 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~---  143 (259)
                      ++|.+|++.. ++++.+|||++|+.      |.|+||||++++|| |+.+||+||++||||+....+..++.+....   
T Consensus         3 ~~~g~vi~~~-~~~~~~vLl~~~~~------~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   74 (130)
T cd03428           3 RSAGAIIYRR-LNNEIEYLLLQASY------GHWDFPKGHVEPGE-DDLEAALRETEEETGITAEQLFIVLGFKETLNYQ   74 (130)
T ss_pred             eEEEEEEEEe-cCCCceEEEEEccC------CcCcCCcCCCCCCC-CHHHHHHHHHHHHHCCChhhhhhhccceeEEEcc
Confidence            3444444444 34556899999885      78999999999999 9999999999999999988776653221111   


Q ss_pred             -hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          144 -SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       144 -~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                       ......++.|++.+...  ..+.++ +|+.++.|++++++.+.-
T Consensus        75 ~~~~~~~~~~f~~~~~~~--~~~~~~-~E~~~~~W~~~~e~~~~~  116 (130)
T cd03428          75 VRGKLKTVTYFLAELRPD--VEVKLS-EEHQDYRWLPYEEALKLL  116 (130)
T ss_pred             ccCcceEEEEEEEEeCCC--Cccccc-cceeeEEeecHHHHHHHc
Confidence             12334456677766532  233445 799999999999997643

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.66  E-value=1.7e-16  Score=134.60  Aligned_cols=116  Identities=21%  Similarity=0.260  Sum_probs=83.5

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCccee-eeeehhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVD-VVTVIEP  141 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~-~l~~l~~  141 (259)
                      +..+.||.+++++ ++|  +|||++|+..+..+||.|++| ||++++|| ++++||+||+.|||||++..+. +++.+..
T Consensus        31 ~~~h~av~v~i~~-~~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~  106 (184)
T PRK03759         31 TPLHLAFSCYLFD-ADG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGE-SLEDAVIRRCREELGVEITDLELVLPDFRY  106 (184)
T ss_pred             CCeeeEEEEEEEc-CCC--eEEEEEccCCCCCCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccccccccceEEE
Confidence            4567788887776 345  899999988777889999986 89999999 9999999999999999886443 2322211


Q ss_pred             h-Hhhhc----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          142 F-LSKYL----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       142 ~-~~~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      . ....+    ...+.|++....    .+.++++|+.++.|+|++++.+.-
T Consensus       107 ~~~~~~~~~~~~~~~vf~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~i  153 (184)
T PRK03759        107 RATDPNGIVENEVCPVFAARVTS----ALQPNPDEVMDYQWVDPADLLRAV  153 (184)
T ss_pred             EEecCCCceeeEEEEEEEEEECC----CCCCChhHeeeEEEECHHHHHHHH
Confidence            1 01111    123345554432    345678899999999999997643

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=3.3e-16  Score=124.51  Aligned_cols=105  Identities=24%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcce
Q 025031           70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLR  149 (259)
Q Consensus        70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~  149 (259)
                      |.+++++ .++  +|||++|...  .++|.|+||||++|.|| ++.+||.||++||||+.......++.....   ....
T Consensus         3 ~~~vv~~-~~~--~vLl~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~   73 (123)
T cd04671           3 VAAVILN-NQG--EVLLIQEAKR--SCRGKWYLPAGRMEPGE-TIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWF   73 (123)
T ss_pred             EEEEEEc-CCC--EEEEEEecCC--CCCCeEECceeecCCCC-CHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEE
Confidence            3344444 345  8999999864  46889999999999999 999999999999999999877776653321   1222


Q ss_pred             eeeEeeEeeccccCCCCCCccchhhhcccchhhh
Q 025031          150 VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF  183 (259)
Q Consensus       150 v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el  183 (259)
                      .+.|.+............+..|+.++.|++++++
T Consensus        74 ~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el  107 (123)
T cd04671          74 RFVFTGNITGGDLKTEKEADSESLQARWYSNKDL  107 (123)
T ss_pred             EEEEEEEEeCCeEccCCCCCcceEEEEEECHHHC
Confidence            3334444332111111123467889999999999

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.9e-16  Score=124.29  Aligned_cols=107  Identities=26%  Similarity=0.312  Sum_probs=73.6

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh----
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS----  144 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~----  144 (259)
                      +|.+++++ .+|  +|||+||..    ++|.|+||||+++.|| |+.+||+||++||||+++..+.+++.....+.    
T Consensus         4 ~v~~~i~~-~~~--~iLL~r~~~----~~~~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   75 (125)
T cd04696           4 TVGALIYA-PDG--RILLVRTTK----WRGLWGVPGGKVEWGE-TLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFH   75 (125)
T ss_pred             EEEEEEEC-CCC--CEEEEEccC----CCCcEeCCceeccCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCC
Confidence            34444555 345  799998753    4689999999999999 99999999999999999887776554322211    


Q ss_pred             -hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          145 -KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       145 -~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                       .....+..|.+....   .....+ +|+.++.|+|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~---~~~~~~-~e~~~~~W~~~~el~~~~  115 (125)
T cd04696          76 KPAHFVLFDFFARTDG---TEVTPN-EEIVEWEWVTPEEALDYP  115 (125)
T ss_pred             CccEEEEEEEEEEecC---CcccCC-cccceeEEECHHHHhcCC
Confidence             112223334444332   122333 789999999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.64  E-value=6.2e-16  Score=123.62  Aligned_cols=99  Identities=18%  Similarity=0.135  Sum_probs=72.1

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--hcceeeeEeeEeecc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--YLLRVVPVIGILHNR  160 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~~~~v~~~v~~~~~~  160 (259)
                      ++||++|...   ..+.|+||||++|+|| |+.+||.||++||||+++....+++........  .....+.|++.+...
T Consensus        12 ~vLlv~r~~~---~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   87 (134)
T cd03675          12 RFLLVEEETD---GGLVFNQPAGHLEPGE-SLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEH   87 (134)
T ss_pred             EEEEEEEccC---CCceEECCCccCCCCC-CHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCC
Confidence            8999998764   4579999999999999 999999999999999998877777654422221  122233455555432


Q ss_pred             ccCCCCCCccchhhhcccchhhhcccc
Q 025031          161 KAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       161 ~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      . .. ....+|+.++.|++++++.+..
T Consensus        88 ~-~~-~~~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          88 L-PD-QPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             C-CC-CCCCCCceeeEEEeHHHHHhhh
Confidence            1 11 1234689999999999998755

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.64  E-value=7.3e-16  Score=121.46  Aligned_cols=97  Identities=20%  Similarity=0.222  Sum_probs=72.8

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|+.. +.++|.|+||||++++|| ++.+||.||+.||+|+++.....++.+.+.++.....+..|.+....   
T Consensus        17 ~vll~rR~~~-~~~~g~w~~PgG~~~~gE-~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   91 (129)
T PRK10776         17 EIFITRRAAD-AHMAGKWEFPGGKIEAGE-TPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVESWE---   91 (129)
T ss_pred             EEEEEEecCC-CCCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEEEC---
Confidence            8999999876 467899999999999999 99999999999999998776666666555454444445544443221   


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..  +...|+.++.|++++++...
T Consensus        92 ~~--~~~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         92 GE--PWGKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             Cc--cCCccCCccEEecHHHCccC
Confidence            11  23457888999999998753

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.64  E-value=6.4e-16  Score=131.19  Aligned_cols=113  Identities=21%  Similarity=0.239  Sum_probs=84.0

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      ..||+|+.+. +++  +|||+++... ..+++.|+||||.+|+|| ++.+||+||++||||+.+..+..++.+....+..
T Consensus        47 ~~~v~v~~~~-~~~--~vlLvrq~r~-~~~~~~~elPaG~ve~gE-~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~  121 (185)
T PRK11762         47 RGAVMIVPIL-DDD--TLLLIREYAA-GTERYELGFPKGLIDPGE-TPLEAANRELKEEVGFGARQLTFLKELSLAPSYF  121 (185)
T ss_pred             CCEEEEEEEe-CCC--EEEEEEeecC-CCCCcEEEccceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc
Confidence            3456665554 344  7999987644 467788999999999999 9999999999999999999999998865544444


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...++.|++.....  .....++.|..++.|+|++++.+.
T Consensus       122 ~~~~~~f~a~~~~~--~~~~~~e~E~i~~~~~~~~e~~~~  159 (185)
T PRK11762        122 SSKMNIVLAEDLYP--ERLEGDEPEPLEVVRWPLADLDEL  159 (185)
T ss_pred             CcEEEEEEEEcccc--ccCCCCCCceeEEEEEcHHHHHHH
Confidence            55566777653322  112345677789999999988653

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.64  E-value=5.1e-16  Score=127.01  Aligned_cols=98  Identities=23%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|...     +.|+||||++|.|| |+.+||.||++||||+.+........+.. ....+..++.|++..... .
T Consensus        15 ~vLLvr~~~~-----~~W~lPGG~ve~gE-s~~~AA~REl~EETGl~v~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~-~   86 (145)
T cd03672          15 KVLLVKGWKS-----KSWSFPKGKINKDE-DDHDCAIREVYEETGFDISKYIDKDDYIE-LIIRGQNVKLYIVPGVPE-D   86 (145)
T ss_pred             EEEEEEecCC-----CCEECCCccCCCCc-CHHHHHHHHHHHhhCccceeccccceeee-cccCCcEEEEEEEecCCC-C
Confidence            8999998643     58999999999999 99999999999999998765321111111 111123344454432211 1


Q ss_pred             CCCCC-Cccchhhhcccchhhhcccch
Q 025031          163 FKPTP-NPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       163 ~~~~~-~~~Ev~~v~wvpl~ell~~~~  188 (259)
                      ....+ ..+|+.++.|+|++++.+...
T Consensus        87 ~~~~~~~~~E~~~~~Wv~~~el~~~~~  113 (145)
T cd03672          87 TPFEPKTRKEISKIEWFDIKDLPTKKN  113 (145)
T ss_pred             cccCcCChhhhheEEEeeHHHhhhhhh
Confidence            11122 347999999999999987554

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=9.7e-16  Score=119.63  Aligned_cols=92  Identities=25%  Similarity=0.359  Sum_probs=68.1

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcc--eeeeeehhhhHh-h--hcceeeeEeeEe
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSL--VDVVTVIEPFLS-K--YLLRVVPVIGIL  157 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~--i~~l~~l~~~~~-~--~~~~v~~~v~~~  157 (259)
                      ++||++|...     |.|.||||+++++| ++.+||+||++||||+....  +..++.+..... .  ....++.|++.+
T Consensus        13 ~vLl~~r~~~-----~~w~~PgG~ve~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~   86 (118)
T cd04690          13 RVLLVRKRGT-----DVFYLPGGKIEAGE-TPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAEL   86 (118)
T ss_pred             eEEEEEECCC-----CcEECCCCccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcc
Confidence            8999988643     78999999999999 99999999999999998877  777776654321 1  123344444443


Q ss_pred             eccccCCCCCCccchhhhcccchhhhcc
Q 025031          158 HNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      ..    .+. ..+|+.++.|++++++..
T Consensus        87 ~~----~~~-~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          87 TG----EPV-PAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             cC----CcC-CCchhhccEEecHHHccc
Confidence            32    222 347999999999999843

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=5.8e-16  Score=122.19  Aligned_cols=108  Identities=29%  Similarity=0.292  Sum_probs=72.1

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh-Hhh-h
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF-LSK-Y  146 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~-~~~-~  146 (259)
                      +|.+++++ ++|  +|||++|+.....++|.|+||||+++.|| ++.+||+||++||||+.+.....++..... .+. +
T Consensus         3 ~v~~vv~~-~~~--~iLl~kr~~~~~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04699           3 AVAALIVK-DVG--RILILKRSKDERTAPGKWELPGGKVEEGE-TFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVY   78 (129)
T ss_pred             eEEEEEEC-CCC--cEEEEEecCCCCCCCCcCcCCccCccCCC-CHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEE
Confidence            44444554 335  89999998875457899999999999999 999999999999999988766654221111 111 1


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL  184 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell  184 (259)
                      ......|.+....    ......+|+.++.|++++++.
T Consensus        79 ~~~~~~~~~~~~~----~~~~~~~e~~~~~w~~~~el~  112 (129)
T cd04699          79 NVIYLVFVCEALS----GAVKLSDEHEEYAWVTLEELA  112 (129)
T ss_pred             EEEEEEEEeeecC----CcccCChhheEEEEecHHHhh
Confidence            1111222222111    112345788999999999973

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1e-15  Score=121.11  Aligned_cols=96  Identities=19%  Similarity=0.133  Sum_probs=68.2

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc--c--eeeeEeeEee
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL--L--RVVPVIGILH  158 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~--~--~v~~~v~~~~  158 (259)
                      +|||++|...     +.|.+|||++|.|| ++.+||.||++||||+.......++.+.......+  .  ..+.|.+...
T Consensus        13 ~vLlv~~~~~-----~~~~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~   86 (125)
T cd04689          13 KVLLARVIGQ-----PHYFLPGGHVEPGE-TAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESS   86 (125)
T ss_pred             EEEEEEecCC-----CCEECCCCcCCCCC-CHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcc
Confidence            8999998643     68999999999999 99999999999999999988888877654332211  1  1233333333


Q ss_pred             ccccCCCCCCccchhhhcccchhhhc
Q 025031          159 NRKAFKPTPNPGEVEEVFDAPLEMFL  184 (259)
Q Consensus       159 ~~~~~~~~~~~~Ev~~v~wvpl~ell  184 (259)
                      .........+.+|+.++.|++++++.
T Consensus        87 ~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          87 WLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             cccccCCccCccceEEEEEccHHHcc
Confidence            21111122345688999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.1e-15  Score=121.35  Aligned_cols=100  Identities=19%  Similarity=0.069  Sum_probs=72.3

Q ss_pred             CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce-eeeeehhhhHhhh----cceeeeE
Q 025031           79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV-DVVTVIEPFLSKY----LLRVVPV  153 (259)
Q Consensus        79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i-~~l~~l~~~~~~~----~~~v~~~  153 (259)
                      ++..+|||++|...     |.|+||||++|.|| |+.+||+||++||||+..... ..++.+.......    ...++.|
T Consensus        12 ~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E-~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f   85 (122)
T cd04666          12 GGEVEVLLVTSRRT-----GRWIVPKGGPEKDE-SPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVF   85 (122)
T ss_pred             CCceEEEEEEecCC-----CeEECCCCCcCCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEE
Confidence            34458999998754     88999999999999 999999999999999988776 7777765443321    3334445


Q ss_pred             eeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          154 IGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       154 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      .+.+....  . .....|+.++.|++++++.+.-
T Consensus        86 ~~~~~~~~--~-~~~~~e~~~~~W~~~~ea~~~~  116 (122)
T cd04666          86 PLEVTEEL--D-EWPEMHQRKRKWFSPEEAALLV  116 (122)
T ss_pred             EEEEeccc--c-CCcccCceEEEEecHHHHHHhc
Confidence            55544321  1 1123567899999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.63  E-value=1.4e-15  Score=121.68  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=71.6

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|... +.++|.|+||||++|.|| ++.+||.||+.||||+.+....+++...+..+.....++.|.+....   
T Consensus        16 ~vLL~~R~~~-~~~~g~w~~PgG~ve~gE-~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   90 (135)
T PRK10546         16 KILLAQRPAH-SDQAGLWEFAGGKVEPGE-SQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFH---   90 (135)
T ss_pred             EEEEEEccCC-CCCCCcEECCcccCCCCC-CHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEec---
Confidence            8999999765 468899999999999999 99999999999999999876666665544444444444444433221   


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..  +...|..++.|++++++.+.
T Consensus        91 ~~--~~~~e~~~~~W~~~~el~~~  112 (135)
T PRK10546         91 GE--LQAHEHQALVWCTPEEALRY  112 (135)
T ss_pred             Cc--ccccccceeEEcCHHHcccC
Confidence            11  12346778899999998753

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.62  E-value=1.6e-15  Score=125.43  Aligned_cols=112  Identities=18%  Similarity=0.181  Sum_probs=78.6

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh---
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF---  142 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~---  142 (259)
                      .+.+|.+++++ .+|  +|||++|+..    +|.|++|||++++|| ++.+||.||++||||+.+..+.+++.+...   
T Consensus         7 ~~~~v~~~i~~-~~g--~vLL~~r~~~----~~~w~~P~G~~~~gE-~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y   78 (156)
T PRK00714          7 YRPNVGIILLN-RQG--QVFWGRRIGQ----GHSWQFPQGGIDPGE-TPEQAMYRELYEEVGLRPEDVEILAETRDWLRY   78 (156)
T ss_pred             CCCeEEEEEEe-cCC--EEEEEEEcCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCccceEEEEEcCCeEEe
Confidence            34567676776 345  8999999843    489999999999999 999999999999999999888877765311   


Q ss_pred             --Hh------hh---cceeeeEeeEeeccccCCCCC---Cccchhhhcccchhhhccc
Q 025031          143 --LS------KY---LLRVVPVIGILHNRKAFKPTP---NPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 --~~------~~---~~~v~~~v~~~~~~~~~~~~~---~~~Ev~~v~wvpl~ell~~  186 (259)
                        ..      ..   +...+.|++..... .....+   +.+|+.++.|++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~-~~~~~l~~~~~~E~~~~~W~~~del~~~  135 (156)
T PRK00714         79 DLPKRLVRRSKGVYRGQKQKWFLLRLTGD-DSEINLNTTSHPEFDAWRWVSYWYPLDQ  135 (156)
T ss_pred             cCcHHHhhccCCcccCcEEEEEEEEecCC-CccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence              00      00   11234455554321 112222   3369999999999999764

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=1.8e-15  Score=119.81  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh----cceeeeEeeEee
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY----LLRVVPVIGILH  158 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~----~~~v~~~v~~~~  158 (259)
                      +|||++|..     .+.|+||||++|.|| ++.+||.||++||||+.+.....++....++...    ...++.|.+.+.
T Consensus        13 ~vLl~~~~~-----~~~w~lPgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   86 (126)
T cd04688          13 KLLVQKNPD-----ETFYRPPGGGIEFGE-SSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLL   86 (126)
T ss_pred             EEEEEEeCC-----CCeEECCCccccCCC-CHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeC
Confidence            899998875     478999999999999 9999999999999999988888777765332211    222344445544


Q ss_pred             ccccCC----CCCCccchhhhcccchhhhccc
Q 025031          159 NRKAFK----PTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       159 ~~~~~~----~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ......    ...+.+|+.++.|++++++...
T Consensus        87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             CCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            322110    0124578999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.60  E-value=2.4e-15  Score=117.02  Aligned_cols=97  Identities=22%  Similarity=0.319  Sum_probs=74.5

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      ++||++|+... .++|.|+||||+++.+| ++.+||.||+.||+|+++.....++...+..+.....++.|.+.....  
T Consensus        14 ~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e-~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   89 (124)
T cd03425          14 RILIAQRPAGK-HLGGLWEFPGGKVEPGE-TPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSG--   89 (124)
T ss_pred             EEEEEEeCCCC-CCCCeEeCCCcccCCCC-CHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCC--
Confidence            89999998774 68999999999999999 999999999999999988776667665544444444455555544321  


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         ...+.|..++.|++++++.+.
T Consensus        90 ---~~~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          90 ---EPQLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             ---CcccccCceEEEeeHHHcccC
Confidence               122467889999999998764

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=2.9e-15  Score=119.03  Aligned_cols=100  Identities=22%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh--------hhcceeeeEe
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS--------KYLLRVVPVI  154 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~--------~~~~~v~~~v  154 (259)
                      +|||++|...   ..+.|.+|||++|.|| ++.+||.||+.||||+.+....++........        ......+.|+
T Consensus        13 ~vLl~~r~~~---~~~~~~lPGG~ve~gE-t~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~   88 (128)
T cd04687          13 KILLIKHHDD---GGVWYILPGGGQEPGE-TLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFE   88 (128)
T ss_pred             EEEEEEEEcC---CCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEE
Confidence            8999998643   2478999999999999 99999999999999999876555544332211        1122233344


Q ss_pred             eEeecccc--CCCCCCccchhhhcccchhhhcccc
Q 025031          155 GILHNRKA--FKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       155 ~~~~~~~~--~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      +.+.....  .....+ .|..++.|+|++++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~  122 (128)
T cd04687          89 CKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDIP  122 (128)
T ss_pred             EEECCCCcccccCCCC-CCEEeeEEEcHHHhCccc
Confidence            44433211  111122 345689999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=3.2e-15  Score=118.09  Aligned_cols=104  Identities=27%  Similarity=0.296  Sum_probs=72.9

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh---
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK---  145 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~---  145 (259)
                      +|.++++++  +  +|||++|..     .|.|+||||++++|| |+.+||+||++||||+......+++........   
T Consensus         4 ~v~~~i~~~--~--~vLL~~~~~-----~~~w~~PGG~ve~gE-s~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~   73 (123)
T cd04672           4 DVRAAIFKD--G--KILLVREKS-----DGLWSLPGGWADVGL-SPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPP   73 (123)
T ss_pred             eEEEEEEEC--C--EEEEEEEcC-----CCcEeCCccccCCCC-CHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCC
Confidence            455555653  4  899998875     489999999999999 999999999999999988666666655432211   


Q ss_pred             hcce--eeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLLR--VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~--v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ....  ...|++.+..   ..+..+ +|+.++.|++++++.+.
T Consensus        74 ~~~~~~~~~f~~~~~~---~~~~~~-~E~~~~~W~~~~el~~l  112 (123)
T cd04672          74 QPYQVYKLFFLCEILG---GEFKPN-IETSEVGFFALDDLPPL  112 (123)
T ss_pred             CceEEEEEEEEEEecC---CcccCC-CceeeeEEECHHHCccc
Confidence            1122  2234444332   223344 78999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.60  E-value=2.5e-15  Score=133.88  Aligned_cols=118  Identities=12%  Similarity=0.091  Sum_probs=86.7

Q ss_pred             cccccccCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeee
Q 025031           57 VRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVV  136 (259)
Q Consensus        57 ~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l  136 (259)
                      ..+...++....+|++++.+  ++  +|||++|...   .+|.|++|||++|+|| |+++||.||++|||||.+..+..+
T Consensus       122 ~c~~~~yp~~~paViv~V~~--~~--~iLL~rr~~~---~~g~wslPgG~vE~GE-s~eeAa~REv~EEtGl~v~~~~~~  193 (256)
T PRK00241        122 HCRERYYPRIAPCIIVAVRR--GD--EILLARHPRH---RNGVYTVLAGFVEVGE-TLEQCVAREVMEESGIKVKNLRYV  193 (256)
T ss_pred             CCCCEECCCCCCEEEEEEEe--CC--EEEEEEccCC---CCCcEeCcccCCCCCC-CHHHHhhhhhhhccCceeeeeEEE
Confidence            34445556555666665554  23  8999998754   2789999999999999 999999999999999999888888


Q ss_pred             eehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          137 TVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       137 ~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      +.......  ...++.|.+.+..   ..+.++++|+.++.|++++++....
T Consensus       194 ~s~~~~~p--~~lm~~f~a~~~~---~~~~~~~~Ei~~a~W~~~del~~lp  239 (256)
T PRK00241        194 GSQPWPFP--HSLMLGFHADYDS---GEIVFDPKEIADAQWFRYDELPLLP  239 (256)
T ss_pred             EeEeecCC--CeEEEEEEEEecC---CcccCCcccEEEEEEECHHHCcccC
Confidence            76532221  2234556666543   2345677899999999999987644

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=2.9e-15  Score=118.39  Aligned_cols=95  Identities=21%  Similarity=0.254  Sum_probs=67.6

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|...   ..+.|+||||++|.|| |+.+||.||++||||+.+....+++....    .+...+.|++...... 
T Consensus        13 ~vLL~~r~~~---~~~~w~lPGG~ve~gE-s~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~g~-   83 (121)
T cd04669          13 EILLIRRIKP---GKTYYVFPGGGIEEGE-TPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYFLARVISGK-   83 (121)
T ss_pred             EEEEEEEecC---CCCcEECCceeccCCC-CHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEEEEEEECCe-
Confidence            8999998754   2578999999999999 99999999999999999866666665433    1233455666544321 


Q ss_pred             CCC-------CCCccchhhhcccchhhhccc
Q 025031          163 FKP-------TPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~-------~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...       ..+.++..++.|++++++...
T Consensus        84 ~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          84 LGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             ecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            110       011234567899999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=3.2e-15  Score=116.21  Aligned_cols=90  Identities=22%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|..      |.|+||||++++|| ++.+||.||++||||+.+..+..++.+..    .....+.|++.+...  
T Consensus        12 ~vLlv~r~~------~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~~--   78 (112)
T cd04667          12 RVLLVRKSG------SRWALPGGKIEPGE-TPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVPPS--   78 (112)
T ss_pred             EEEEEEcCC------CcEeCCCCcCCCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcCCc--
Confidence            899999863      78999999999999 99999999999999999888777766432    122345566654432  


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                       .....++|+.++.|+|++++.+.
T Consensus        79 -~~~~~~~e~~~~~W~~~~el~~~  101 (112)
T cd04667          79 -AQPKPSNEIADCRWLSLDALGDL  101 (112)
T ss_pred             -CCCCCchheeEEEEecHHHhhhc
Confidence             11224579999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=6.2e-15  Score=117.73  Aligned_cols=106  Identities=24%  Similarity=0.121  Sum_probs=75.4

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      .+.+|.++++++  +  +|||++|...  ...|.|+||||++|.|| ++.+||+||++||||+.+....+++.... .. 
T Consensus        12 ~~~~v~~ii~~~--~--~vLL~kr~~~--~~~g~w~lPgG~ve~gE-~~~~a~~REl~EEtGl~~~~~~~~~~~~~-~~-   82 (130)
T cd04511          12 PKIIVGCVPEWE--G--KVLLCRRAIE--PRHGFWTLPAGFMENGE-TTEQGALRETWEEAGARVEIDGLYAVYSV-PH-   82 (130)
T ss_pred             CcEEEEEEEecC--C--EEEEEEecCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCEEEeeeEEEEEec-CC-
Confidence            345555555542  4  8999999764  46789999999999999 99999999999999998876666665432 11 


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL  184 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell  184 (259)
                      .....+.|++.+...   ... ...|..++.|++++++.
T Consensus        83 ~~~~~~~f~~~~~~~---~~~-~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          83 ISQVYMFYRARLLDL---DFA-PGPESLEVRLFTEEEIP  117 (130)
T ss_pred             ceEEEEEEEEEEcCC---ccc-CCcchhceEEECHHHCC
Confidence            222344566665432   222 23678899999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>TIGR00586 mutt mutator mutT protein

Probab=99.58  E-value=7.4e-15  Score=115.98  Aligned_cols=97  Identities=21%  Similarity=0.332  Sum_probs=73.4

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|... +.++|.|+||||+++.|| ++.+|+.||+.||+|+.+.....++...+.++.....++.|.+...+.  
T Consensus        17 ~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge-~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~--   92 (128)
T TIGR00586        17 EIIITRRADG-HMFAKLLEFPGGKEEGGE-TPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGG--   92 (128)
T ss_pred             EEEEEEEeCC-CCCCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCC--
Confidence            8999999875 578899999999999999 999999999999999987666666665555555455556665554331  


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                       .  +...+..++.|++++++.+.
T Consensus        93 -~--~~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        93 -P--PGKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             -C--cCcccccccEEeCHHHCCcc
Confidence             1  11345677899999988764

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=5.5e-15  Score=116.15  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh---Hh-
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF---LS-  144 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~---~~-  144 (259)
                      +|.+++++ +++  +|||++|+..     |.|+||||+++.+| ++.+||.||++||||+......+++.+...   .+ 
T Consensus         4 ~v~~ii~~-~~~--~vLl~~r~~~-----~~w~lPgG~v~~~E-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~   74 (129)
T cd04676           4 GVTAVVRD-DEG--RVLLIRRSDN-----GLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTY   74 (129)
T ss_pred             eEEEEEEC-CCC--eEEEEEecCC-----CcEECCeeccCCCC-CHHHHHHHHHHHHhCceeEeeEEEEEeecccceeec
Confidence            45555555 345  8999999865     89999999999999 999999999999999988766665433211   11 


Q ss_pred             -h---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 -K---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 -~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                       .   +......|++.+...   ....+.+|+.++.|++++++.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          75 PNGDVRQYLDITFRCRVVGG---ELRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             CCCCcEEEEEEEEEEEeeCC---eecCCCCceeEEEEEChhhCccc
Confidence             1   111222233333321   12235578889999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=7.9e-15  Score=117.52  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC-cceeeeeehhhhH---hh----hcceeeeEe
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP-SLVDVVTVIEPFL---SK----YLLRVVPVI  154 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~-~~i~~l~~l~~~~---~~----~~~~v~~~v  154 (259)
                      +|||++|...     +.|+||||++|+|| ++.+||+||++||||+.. .....++.+..+.   ..    .....+.|+
T Consensus        12 ~vLLv~~~~~-----~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   85 (131)
T cd04686          12 KILLLYTKRY-----GDYKFPGGGVEKGE-DHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYL   85 (131)
T ss_pred             EEEEEEEcCC-----CcEECccccCCCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEEEEEEEE
Confidence            8999998653     57999999999999 999999999999999986 4455555553221   11    122345566


Q ss_pred             eEeeccccCCCCCCccch---hhhcccchhhhcccch
Q 025031          155 GILHNRKAFKPTPNPGEV---EEVFDAPLEMFLKDEN  188 (259)
Q Consensus       155 ~~~~~~~~~~~~~~~~Ev---~~v~wvpl~ell~~~~  188 (259)
                      +.+.... ..+.++..|.   ..+.|+|++++.+...
T Consensus        86 ~~~~~~~-~~~~~~~~e~~~~~~~~W~~~~ea~~~~~  121 (131)
T cd04686          86 CEVDAEL-GAQQLEDYEAELGMKPIWINIHEAIEHNE  121 (131)
T ss_pred             EEEcCCc-CCcccchhhHhcCCCcEEecHHHHHHhhH
Confidence            6654322 2233444444   2589999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=1.1e-14  Score=116.20  Aligned_cols=108  Identities=19%  Similarity=0.083  Sum_probs=67.3

Q ss_pred             eEEEEEeecCCCceEEEEeecccc--cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASR--LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~--~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      |.+|++.. +++.++|||++|...  .+...|.|+||||+++.+| ++.+||+||++||||+... ...+. +..+....
T Consensus         3 ~g~v~~~~-~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E-~~~~aA~REl~EEtGl~~~-~~~~~-l~~~~~~~   78 (126)
T cd04662           3 AGILLYRF-RDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGE-DPLLAAKREFSEETGFCVD-GPFID-LGSLKQSG   78 (126)
T ss_pred             EEEEEEEE-cCCcEEEEEEEccCccccCCCCCEEECCcccCCCCc-CHHHHHHHHHHHHhCCcce-eeEEe-EEEEECCC
Confidence            34444433 346679999997443  2356789999999999999 9999999999999999865 22222 21122222


Q ss_pred             cceeeeEeeEeeccc-------------cCCCCCC-ccchhhhcccch
Q 025031          147 LLRVVPVIGILHNRK-------------AFKPTPN-PGEVEEVFDAPL  180 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~-------------~~~~~~~-~~Ev~~v~wvpl  180 (259)
                      +..++.|++.+....             ...+... .+|++++.|+|+
T Consensus        79 ~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          79 GKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             CeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            334555554433210             1122222 478888888873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.54  E-value=9.8e-15  Score=124.13  Aligned_cols=117  Identities=19%  Similarity=0.147  Sum_probs=82.0

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccc----cccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLS----THSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF  142 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~----~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~  142 (259)
                      ..+|.|++++.+++  +|||+++-+..-    ..++.|+||||++|.|| ++++||+||++||||+....+..++.+...
T Consensus        44 ~~~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE-~~~~aA~REl~EEtG~~~~~~~~~~~~~~~  120 (185)
T TIGR00052        44 GNAAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGE-SPEDVARREAIEEAGYQVKNLRKLLSFYSS  120 (185)
T ss_pred             CCeEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCCC-CHHHHHHHHccccccceecceEEEEEEEcC
Confidence            34555555543334  788888654311    14678999999999999 999999999999999999988888776544


Q ss_pred             HhhhcceeeeEeeEeeccccC-CCCCCccchhhhcccchhhhccc
Q 025031          143 LSKYLLRVVPVIGILHNRKAF-KPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......++.|++.+...... ....+.+|..++.|+|++++.+.
T Consensus       121 ~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~  165 (185)
T TIGR00052       121 PGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW  165 (185)
T ss_pred             CCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence            444455677788876532111 11223456678999999988653

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=2.2e-14  Score=110.59  Aligned_cols=97  Identities=31%  Similarity=0.377  Sum_probs=71.1

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh--hhcceeeeEeeEeecc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS--KYLLRVVPVIGILHNR  160 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~--~~~~~v~~~v~~~~~~  160 (259)
                      ++||++|+..   ++|.|+||||+++.+| ++.++|+||++||+|+.+.....++.......  .....++.|.+.+...
T Consensus        13 ~ill~kr~~~---~~~~~~~p~G~~~~~e-~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (123)
T cd02883          13 RVLLVRRADS---PGGLWELPGGGVEPGE-TLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGG   88 (123)
T ss_pred             CEEEEEEcCC---CCCeEeCCcccccCCC-CHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEEEEEeCCC
Confidence            8999999876   6799999999999999 99999999999999998864444444332222  2334445555554432


Q ss_pred             ccCCCCCCccchhhhcccchhhhcc
Q 025031          161 KAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       161 ~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      ..  ...+..|+.++.|++++++.+
T Consensus        89 ~~--~~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          89 EP--TLLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             Cc--CCCCCCccceEEEEcHHHCcc
Confidence            11  124567889999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PLN02791 Nudix hydrolase homolog

Probab=99.51  E-value=2.9e-14  Score=142.58  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=86.9

Q ss_pred             cCccceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeeh
Q 025031           63 FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVI  139 (259)
Q Consensus        63 ~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l  139 (259)
                      .+..+.||.|.+++.+++  +|||+||+..+..|||.|++ +|||++.|| +..+||+||++||+||.+.  .+..++.+
T Consensus        28 ~Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGE-s~~eAA~REL~EELGI~l~~~~l~~l~~~  104 (770)
T PLN02791         28 DGDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGD-TSLLSAQRELEEELGIILPKDAFELLFVF  104 (770)
T ss_pred             CCCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCC-CHHHHHHHHHHHHhCCCCChhheeeeeeE
Confidence            467899999999985345  89999999999999999999 799999999 9999999999999999743  34444442


Q ss_pred             hhh-H-hh----hcceeeeEeeEeec-cccCCCCCCccchhhhcccchhhhcc
Q 025031          140 EPF-L-SK----YLLRVVPVIGILHN-RKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       140 ~~~-~-~~----~~~~v~~~v~~~~~-~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      ... . ..    .....+.|++.... ......+++++||+++.|++++++.+
T Consensus       105 ~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~  157 (770)
T PLN02791        105 LQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS  157 (770)
T ss_pred             EEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence            111 0 11    01122333332211 11124567899999999999999974

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=7.9e-14  Score=112.42  Aligned_cols=114  Identities=18%  Similarity=0.090  Sum_probs=72.6

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC-cceeeeeehhhhH----
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP-SLVDVVTVIEPFL----  143 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~-~~i~~l~~l~~~~----  143 (259)
                      ++.+++++ .+|  +|||++|.......++.|.+|||+++.|| ++.+||.||++||||+.. .....+......+    
T Consensus         2 ~~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~gE-~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~   77 (133)
T cd04685           2 AARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPGE-SPEQAARRELREETGITVADLGPPVWRRDAAFTFLG   77 (133)
T ss_pred             eEEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEEEEecC
Confidence            34455565 345  89999987653346789999999999999 999999999999999988 4444433222111    


Q ss_pred             hhhcceeeeEeeEeeccccCCCC---CCccchhhhcccchhhhccc
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPT---PNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~---~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......+.|++.+.........   ...+++..+.|++++++.+.
T Consensus        78 ~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          78 VDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             ccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            11112234455554421111111   11235668999999999764

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.49  E-value=6.7e-14  Score=120.60  Aligned_cols=115  Identities=19%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             eeEEEEEeecCCCceEEEEeeccccccc-----ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLST-----HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF  142 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~-----~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~  142 (259)
                      -+|.|+.+..+++  +|+|++.-+. ..     .+-.|+||+|++|+|| ++++||+||+.||||+.+..+..++.+...
T Consensus        50 ~~V~il~~~~~~~--~vlLvrQyR~-~~~~~~~~~~~lE~PAG~vd~gE-~p~~aA~REL~EETGy~a~~~~~l~~~~~s  125 (202)
T PRK10729         50 HAAVLLPFDPVRD--EVVLIEQIRI-AAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVGRTKPVLSYLAS  125 (202)
T ss_pred             CeEEEEEEECCCC--EEEEEEeeec-ccccCCCCCeEEEccceEcCCCC-CHHHHHHHHHHHHhCceeeEEEEEEEEEcC
Confidence            3455554543334  7888876544 22     1246999999999999 999999999999999999888888766554


Q ss_pred             HhhhcceeeeEeeEeecc--ccCCCCCCccchhhhcccchhhhccc
Q 025031          143 LSKYLLRVVPVIGILHNR--KAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~--~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......++.|++.....  .......+.+|..++.|+|++++.+.
T Consensus       126 pg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~  171 (202)
T PRK10729        126 PGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  171 (202)
T ss_pred             CCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence            445556788888875321  11112356678889999999998764

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.49  E-value=8e-14  Score=128.96  Aligned_cols=111  Identities=20%  Similarity=0.210  Sum_probs=74.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh---hh--
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE---PF--  142 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~---~~--  142 (259)
                      .+|.++++.  +|  +|||++|...  +.+|.|+||||++|+|| ++++||+||++|||||.+....+.+.+.   .+  
T Consensus       204 vtv~avv~~--~g--~VLLvrR~~~--p~~g~W~lPGG~ve~gE-t~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        204 VTVDAVVVQ--SG--HVLLVRRRAE--PGKGLWALPGGFLEQDE-TLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             eEEEEEEEE--CC--EEEEEEecCC--CCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            344444444  34  8999999875  45899999999999999 9999999999999999876544433321   11  


Q ss_pred             Hhh---hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          143 LSK---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...   .....+.|++.+........ ...+|+.++.|+|++++...
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~~~~~-~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGELPRV-KGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCccCcc-CCCCceeeEEEEEHHHhhhh
Confidence            111   12233445555443211111 23478999999999998754

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.47  E-value=1.2e-13  Score=122.21  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCC----------------CchhhhhHHHHHhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDE----------------DDGETATREAKEEI  126 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~----------------s~~~aA~REl~EE~  126 (259)
                      +..+.||.|+|++ .+|  +|||+||+..+..+||.|+.. ||++..||+                +..+||+||+.|||
T Consensus        53 gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl  129 (247)
T PLN02552         53 GLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL  129 (247)
T ss_pred             CceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence            5678899998887 456  899999999999999999665 455554420                15689999999999


Q ss_pred             CCCCcc-----eeeeeehhhhHhhh------c----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          127 GLDPSL-----VDVVTVIEPFLSKY------L----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       127 GL~~~~-----i~~l~~l~~~~~~~------~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ||....     +.+++.+.......      +    ..+..++ +........+.++++||+++.|++++++...
T Consensus       130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~-~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~  203 (247)
T PLN02552        130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLL-FIRPVRDVKVNPNPDEVADVKYVNREELKEM  203 (247)
T ss_pred             CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEE-EEEecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence            998543     44444322111110      1    1222222 2222222346789999999999999999864

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=2.8e-13  Score=107.23  Aligned_cols=101  Identities=21%  Similarity=0.169  Sum_probs=72.2

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL  148 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~  148 (259)
                      +|+|+++.+  +  ++||++|..      +.|+||||++|.+| ++.+||+||++||+|+....+..++.+.........
T Consensus         2 ~v~vi~~~~--~--~vLl~~~~~------~~w~lPgG~ve~gE-~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~   70 (118)
T cd04665           2 SVLVICFYD--D--GLLLVRHKD------RGWEFPGGHVEPGE-TIEEAARREVWEETGAELGSLTLVGYYQVDLFESGF   70 (118)
T ss_pred             EEEEEEEEC--C--EEEEEEeCC------CEEECCccccCCCC-CHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcE
Confidence            344544542  3  899998752      57999999999999 999999999999999999988888886433222233


Q ss_pred             eeeeEeeEeeccccCCCCCCccchhhhcccchhhh
Q 025031          149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF  183 (259)
Q Consensus       149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el  183 (259)
                      ....|++.+......  . ...|+..+.|++....
T Consensus        71 ~~~~y~a~~~~~~~~--~-~~~E~~~~~~~~~~~~  102 (118)
T cd04665          71 ETLVYPAVSAQLEEK--A-SYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEEEEEEecccc--c-ccccccCcEEeccCCc
Confidence            345566665543221  2 3489999999986544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.44  E-value=1.8e-13  Score=109.89  Aligned_cols=95  Identities=19%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeeh-----hhhH-------hhhccee
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI-----EPFL-------SKYLLRV  150 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l-----~~~~-------~~~~~~v  150 (259)
                      ++||++|...   ..|.|+||||++|+|| |+.+||.||++||||+.... .+++..     ...+       ...+..+
T Consensus        14 ~~Llvk~~~~---~~g~W~fPgG~ve~gE-t~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (132)
T cd04661          14 LVLLVQQKVG---SQNHWILPQGKREEGE-TLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV   88 (132)
T ss_pred             EEEEEEeecC---CCCeeECCcccccCCC-CHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence            7899888643   2589999999999999 99999999999999997653 333221     1000       0012335


Q ss_pred             eeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          151 VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       151 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      +.|.+.+...   .+.++ +|+.++.|++++++.+.
T Consensus        89 ~~f~~~~~~g---~~~~~-~e~~~~~W~~~~el~~~  120 (132)
T cd04661          89 FFFKARYMSG---QFELS-QNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEEEEEecC---ccccC-CCcceeEecCHHHHHhh
Confidence            5555554432   22333 78999999999998764

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK08999 hypothetical protein; Provisional

Probab=99.41  E-value=6e-13  Score=121.26  Aligned_cols=97  Identities=19%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|... +.++|.|+||||+++.|| ++.+||.||++||+|+.+.....+....+.++.....++.|.+.....  
T Consensus        18 ~vLL~kR~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~--   93 (312)
T PRK08999         18 RILLARRPEG-KHQGGLWEFPGGKVEPGE-TVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG--   93 (312)
T ss_pred             eEEEEEecCC-CCCCCeEECCccCCCCCC-CHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC--
Confidence            8999999765 578999999999999999 999999999999999987766666665554444444555554332211  


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         .+...|..++.|++++++.+-
T Consensus        94 ---~~~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         94 ---EPHGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             ---cccCccCCccEEecHHHcccC
Confidence               123457788899999998764

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.39  E-value=9.3e-13  Score=112.55  Aligned_cols=114  Identities=16%  Similarity=0.122  Sum_probs=80.5

Q ss_pred             eeEEEEEeecCCCceEEEEeeccccccc------ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLST------HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP  141 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~------~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~  141 (259)
                      .+|.|++++.+++  +|+|++.-+. ..      ..-.|++|+|.+|+ + ++++||+||+.||||+.+..++.++.+..
T Consensus        46 ~~v~Vl~~~~~~~--~vvLvrQyR~-~v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~~~~~l~~~~~  120 (191)
T PRK15009         46 NGATILLYNAKKK--TVVLIRQFRV-ATWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVGEVRKLFELYM  120 (191)
T ss_pred             CEEEEEEEECCCC--EEEEEEcccc-cccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccceEEEeeEEEc
Confidence            3444545553344  7888876654 22      22358999999995 5 69999999999999999999998887655


Q ss_pred             hHhhhcceeeeEeeEeeccccC-CCCCCccchhhhcccchhhhccc
Q 025031          142 FLSKYLLRVVPVIGILHNRKAF-KPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       142 ~~~~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ....+...++.|++........ ....+++|..++.|+|++++.+.
T Consensus       121 spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~  166 (191)
T PRK15009        121 SPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM  166 (191)
T ss_pred             CCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence            5555566678888875321111 11245678889999999998754

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=1e-12  Score=104.00  Aligned_cols=46  Identities=28%  Similarity=0.490  Sum_probs=40.0

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS  131 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~  131 (259)
                      .+||.+|+..  ..+|.|+||||++|.|| ++.+||.||+.||||+...
T Consensus        16 ~~lL~~r~~~--~~~~~w~lPgG~ve~~E-~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674          16 GLLVIRRGIE--PGRGKLALPGGFIELGE-TWQDAVARELLEETGVAVD   61 (118)
T ss_pred             CEEEEEeecC--CCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCccc
Confidence            3667777654  46899999999999999 9999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.35  E-value=2.3e-12  Score=106.62  Aligned_cols=91  Identities=20%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      ++||+++..      ..|+||||++|+|| |+.+||+||++||||+.+..+..++.+...........+.|++.+...  
T Consensus        36 ~~LL~~~~~------~~~elPgG~vE~gE-t~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~--  106 (156)
T TIGR02705        36 QWLLTEHKR------RGLEFPGGKVEPGE-TSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL--  106 (156)
T ss_pred             EEEEEEEcC------CcEECCceecCCCC-CHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc--
Confidence            788887653      24999999999999 999999999999999999999999886544333344455666766532  


Q ss_pred             CCCCCCccchhhhc-ccchhhhccc
Q 025031          163 FKPTPNPGEVEEVF-DAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~-wvpl~ell~~  186 (259)
                       .  .. +|..++. +++++++.+.
T Consensus       107 -~--~~-~e~~E~~~~~~~~~~~~~  127 (156)
T TIGR02705       107 -E--SK-DDYLETKGPVLLQEIPDI  127 (156)
T ss_pred             -c--cC-CCceeeEeEEEHHHHHHH
Confidence             1  12 4545555 6888887653

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.34  E-value=1.3e-12  Score=116.31  Aligned_cols=125  Identities=22%  Similarity=0.297  Sum_probs=93.5

Q ss_pred             ccccccccccccccccCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhC
Q 025031           48 GSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG  127 (259)
Q Consensus        48 g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~G  127 (259)
                      +..+..+| ..+...|+.-.-+|++++.+++    ++||-++..+   ++|.+++-.|.||+|| |+++|+.||++||+|
T Consensus       126 ~g~~~~C~-~cg~~~fPR~dP~vIv~v~~~~----~ilLa~~~~h---~~g~yS~LAGFVE~GE-TlE~AV~REv~EE~G  196 (279)
T COG2816         126 GGWARVCP-KCGHEHFPRIDPCVIVAVIRGD----EILLARHPRH---FPGMYSLLAGFVEPGE-TLEQAVAREVFEEVG  196 (279)
T ss_pred             CceeeeCC-CCCCccCCCCCCeEEEEEecCC----ceeecCCCCC---CCcceeeeeecccCCc-cHHHHHHHHHHHhhC
Confidence            33444444 3445566666667777666532    4888887765   4899999999999999 999999999999999


Q ss_pred             CCCcceeeeeehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       128 L~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      |.+..+.++++.++.+..+.  +.-|.+.....   .+++|..|+.++.|++.++.+..
T Consensus       197 i~V~~vrY~~SQPWPfP~SL--Migf~aey~sg---eI~~d~~Eleda~WFs~~evl~~  250 (279)
T COG2816         197 IKVKNVRYVGSQPWPFPHSL--MLGFMAEYDSG---EITPDEGELEDARWFSRDEVLPA  250 (279)
T ss_pred             eEEeeeeEEeccCCCCchhh--hhhheeeeccc---cccCCcchhhhccccCHhHHhhh
Confidence            99999999998765544332  44455555542   35778899999999999996543

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.33  E-value=3.6e-12  Score=101.92  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             CceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee-eeeehhhhHhhhcceeeeEeeEee
Q 025031           80 GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD-VVTVIEPFLSKYLLRVVPVIGILH  158 (259)
Q Consensus        80 g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~-~l~~l~~~~~~~~~~v~~~v~~~~  158 (259)
                      ++++|++.+...      +.|.||||++++|| ++.+||+||++||||+...... .++............++.+++.+.
T Consensus        12 ~~~~ll~~r~~~------~~~~lPgG~ve~~E-~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   84 (126)
T cd04663          12 EVLELLVFEHPL------AGFQIVKGTVEPGE-TPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEVD   84 (126)
T ss_pred             ceEEEEEEEcCC------CcEECCCccCCCCC-CHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEec
Confidence            346777776543      35999999999999 9999999999999999862211 112211111111222333334332


Q ss_pred             ----ccccCCCCCCccchhhhcccchhhhcc
Q 025031          159 ----NRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       159 ----~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                          ......+..+..+.-.++|+|++++.+
T Consensus        85 ~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~  115 (126)
T cd04663          85 QDLPDSWVHFVQDDGGHEFRFFWVDLASCLD  115 (126)
T ss_pred             CCCcccccCcccCCCCceEEEEEEccccccc
Confidence                111111222334444667999999843

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.31  E-value=7.1e-12  Score=98.62  Aligned_cols=113  Identities=26%  Similarity=0.245  Sum_probs=70.8

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchh-hhhHHHHHhhCCCCc--ceeeeeehhhhHhh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGE-TATREAKEEIGLDPS--LVDVVTVIEPFLSK  145 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~-aA~REl~EE~GL~~~--~i~~l~~l~~~~~~  145 (259)
                      ++.+++.....  .+|++++|....    |.|.||||++|.+| ++.+ ||+||++||||+...  ....++.+......
T Consensus        13 ~~~~~~~~~~~--~~vl~~~~~~~~----~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T COG0494          13 AVAVLVGRDGP--GEVLLAQRRDDG----GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVKDERLELLGEFPPSPGD   85 (161)
T ss_pred             eEEEEEecCCC--CEEeEEEccccC----CceecCCcccCCCC-chHHHHHHHHHHHHhCCeeeeecceeeeeccCcccC
Confidence            44454444322  389999988763    69999999999999 5587 999999999999888  56666665543322


Q ss_pred             hc-----ceeeeEeeEeeccccCCCCCC---ccchhhhcccchhhhcccch
Q 025031          146 YL-----LRVVPVIGILHNRKAFKPTPN---PGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       146 ~~-----~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~ell~~~~  188 (259)
                      ..     .....+..............+   ..|...+.|+++.++.....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  136 (161)
T COG0494          86 GSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL  136 (161)
T ss_pred             cccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence            11     111111221111111111111   25788999999988876543

>PLN03143 nudix hydrolase; Provisional

Probab=99.30  E-value=7.2e-12  Score=113.15  Aligned_cols=52  Identities=29%  Similarity=0.376  Sum_probs=41.5

Q ss_pred             CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc
Q 025031           79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS  131 (259)
Q Consensus        79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~  131 (259)
                      +++.+|+|+++.+. ....-.|+||||++|++++++++||+||++||||+.+.
T Consensus       140 ~ge~~VlLVrQ~R~-pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~  191 (291)
T PLN03143        140 EGETYAVLTEQVRV-PVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK  191 (291)
T ss_pred             CCCEEEEEEEeEec-CCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence            45557999998864 22334799999999986339999999999999999764

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.29  E-value=5.3e-12  Score=107.24  Aligned_cols=50  Identities=28%  Similarity=0.354  Sum_probs=42.8

Q ss_pred             eecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC
Q 025031           75 FEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP  130 (259)
Q Consensus        75 ~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~  130 (259)
                      ....++.++||+++|+..     |.|+||||++|++| ++.+||.||+.||||+..
T Consensus        42 ~~~~~~~l~vLl~~r~~~-----g~walPGG~v~~~E-~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          42 PKSGKPILQFVAIKRPDS-----GEWAIPGGMVDPGE-KISATLKREFGEEALNSL   91 (186)
T ss_pred             ecCCCCeeEEEEEEeCCC-----CcCcCCeeeccCCC-CHHHHHHHHHHHHHcccc
Confidence            333355789999999753     89999999999999 999999999999997754

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.20  E-value=7e-12  Score=112.30  Aligned_cols=112  Identities=20%  Similarity=0.190  Sum_probs=77.7

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      ..-.|++++.+ .++  +.+|..|..  +.-+|.|+.++|.+|+|| |+++||+||++||+|++++.+.+....++....
T Consensus       186 ~dPvVIm~li~-~d~--~~~LL~R~~--r~~~gl~t~lAGFlEpGE-S~eeav~REtwEEtGi~V~~I~~~asQPWP~~p  259 (345)
T KOG3084|consen  186 TDPVVIMLLID-HDG--KHALLGRQK--RYPPGLWTCLAGFLEPGE-SIEEAVRRETWEETGIEVEVISYVASQPWPLMP  259 (345)
T ss_pred             CCCeEEEEEEc-CCC--CEeeeeccc--CCCCchhhhhhccCCccc-cHHHHHHHHHHHHhCceeeeEeeeecCCCCCCc
Confidence            33455555655 555  445555543  466789999999999999 999999999999999999999988776654222


Q ss_pred             hcceeeeEeeEeeccccCCCCCCcc-chhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPG-EVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~-Ev~~v~wvpl~ell~~  186 (259)
                      ..+ +..+++...-.  .....+.+ |..++.|++-+++.+.
T Consensus       260 ~SL-MIgc~ala~~~--~~I~vd~dlEleDaqwF~r~ev~~a  298 (345)
T KOG3084|consen  260 QSL-MIGCLALAKLN--GKISVDKDLELEDAQWFDREEVKSA  298 (345)
T ss_pred             hHH-HHHHHHHHhhC--CccccCcchhhhhcccccHHHHHHH
Confidence            211 22222222211  23456777 9999999999988753

>PLN02839 nudix hydrolase

Probab=99.17  E-value=5.8e-11  Score=109.43  Aligned_cols=123  Identities=24%  Similarity=0.249  Sum_probs=90.7

Q ss_pred             ccCccceeEEEEEeecCCCceEEEEeecccccccccceee-cCCCCCCCCCCCchhhhhHHHHHhhCCCCc---ceeeee
Q 025031           62 TFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVS-LPGGKAEEGDEDDGETATREAKEEIGLDPS---LVDVVT  137 (259)
Q Consensus        62 ~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~ws-fPGG~ve~gE~s~~~aA~REl~EE~GL~~~---~i~~l~  137 (259)
                      .|+.+..+|.+--+...+++.++++.||+.++..+||+|. +.||.+..|| ++.+|++||++||.||+..   .+.-.|
T Consensus       198 lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGe-sp~etliREa~EEAgLp~~l~~~~~~~G  276 (372)
T PLN02839        198 YFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGI-SCGENLVKECEEEAGISKAIADRAIAVG  276 (372)
T ss_pred             ccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCC-CHHHHHHHHHHHHcCCCHHHHhcceEeE
Confidence            4677778888744433456679999999999999999996 5899999999 9999999999999999865   334455


Q ss_pred             ehhhhHh-hhcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          138 VIEPFLS-KYLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       138 ~l~~~~~-~~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      .+.+... ..+. .-.-|++.+.-+.++.|.++..||+++.+++++++.+
T Consensus       277 ~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~  326 (372)
T PLN02839        277 AVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVAN  326 (372)
T ss_pred             EEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence            5543321 1111 1122344444444677788889999999999999975

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.13  E-value=1.5e-10  Score=97.50  Aligned_cols=117  Identities=24%  Similarity=0.331  Sum_probs=76.7

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcc--eeeeeehhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSL--VDVVTVIEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~--i~~l~~l~~~~  143 (259)
                      +.-||.|+.+-..+|.+.++|++.-+. ....-.++||+|.+|.|| |+++||+||++||||+.-..  ......+++-+
T Consensus        72 ~~dgVaIl~il~~dG~~~ivL~kQfRp-P~Gk~ciElPAGLiD~ge-~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGl  149 (225)
T KOG3041|consen   72 RADGVAILAILESDGKPYIVLVKQFRP-PTGKICIELPAGLIDDGE-DFEGAAIRELEEETGYKGKVDMVSPTVFLDPGL  149 (225)
T ss_pred             cCCeEEEEEEEecCCcEEEEEEEeecC-CCCcEEEEcccccccCCC-chHHHHHHHHHHHhCccceeeeccccEEcCCCC
Confidence            344555543333578899999986543 122225789999999999 99999999999999997322  23444555544


Q ss_pred             hhhcceeeeEeeEeec----cccCCCCCCccchhhhcccchhhhccc
Q 025031          144 SKYLLRVVPVIGILHN----RKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~----~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ++...  +-+++.++.    .......++..|..+++-+|+.+|.+.
T Consensus       150 tn~~~--~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~  194 (225)
T KOG3041|consen  150 TNCNL--CIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE  194 (225)
T ss_pred             CCCce--EEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence            44333  333333332    112233566789999999999998753

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=99.00  E-value=5.1e-10  Score=92.75  Aligned_cols=115  Identities=23%  Similarity=0.311  Sum_probs=86.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL--  143 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~--  143 (259)
                      +.|..+.||+ .+|  ++|+++|+..++.|||.|.- -.||--+|| +..+||+|-+.+|+||.+.....+..++.+.  
T Consensus        33 HrAFS~~lFn-e~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~e-s~~~A~~rRl~~ELGie~~~~d~~~il~rf~Yr  108 (185)
T COG1443          33 HRAFSSFLFN-ERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGE-SNEDAARRRLAYELGIEPDQYDKLEILPRFRYR  108 (185)
T ss_pred             HhhhheeEEC-CCC--ceeeehhhhhcccCcccccccccCCCcCCC-chHHHHHHHHHHHhCCCCcccCccccccceEEe
Confidence            5677777887 567  89999999999999999976 468888999 9999999999999999988655444444332  


Q ss_pred             --hhhc---ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          144 --SKYL---LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       144 --~~~~---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                        +..+   ..|.|+++.-...   .+.+|++||.+..|++.++|.+.-.
T Consensus       109 A~~~~~~~E~Eic~V~~~~~~~---~~~~npdEV~~~~wv~~e~l~~~~~  155 (185)
T COG1443         109 AADPDGIVENEICPVLAARLDS---ALDPNPDEVMDYRWVSPEDLKEMVD  155 (185)
T ss_pred             ccCCCCcceeeeeeEEEEeecC---CCCCChHHhhheeccCHHHHHHhhc
Confidence              1122   2355554432221   4578999999999999999987543

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.93  E-value=1.6e-09  Score=87.23  Aligned_cols=118  Identities=24%  Similarity=0.225  Sum_probs=76.1

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      +.|..|-.||+.- ++..++|||+.=+++    +-.|-||+|++|++| +..+||+||++||.|+.-...++++....+.
T Consensus         7 G~r~vagCi~~r~-~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE-~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~   80 (145)
T KOG2839|consen    7 GFRLVAGCICYRS-DKEKIEVLLVSSSKK----PHRWIVPKGGWEPDE-SVEEAALRETWEEAGVKGKLGRLLGGFEDFL   80 (145)
T ss_pred             CcEEEEEeeeeee-cCcceEEEEEecCCC----CCCccCCCCCCCCCC-CHHHHHHHHHHHHhCceeeeeccccchhhcc
Confidence            3444444444443 223578999975543    346999999999999 9999999999999999988888676665544


Q ss_pred             hh-hcceeeeEeeEeeccccCCCCCC-ccchhhhcccchhhhcccc
Q 025031          144 SK-YLLRVVPVIGILHNRKAFKPTPN-PGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       144 ~~-~~~~v~~~v~~~~~~~~~~~~~~-~~Ev~~v~wvpl~ell~~~  187 (259)
                      +. +......+++.+.....+..-++ ..|.....|+.+++....-
T Consensus        81 ~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~  126 (145)
T KOG2839|consen   81 SKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELC  126 (145)
T ss_pred             ChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHH
Confidence            32 22222333333332222221122 2357788999999887644

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.88  E-value=7.5e-09  Score=79.98  Aligned_cols=91  Identities=21%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      ++||+||... +.++|.|+||||.++.++ +.+++..||+.||.++   ....++.+.+.++.....+++|.+.+.... 
T Consensus        15 ~~ll~kR~~~-gl~~glwefP~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~~~~~~-   88 (118)
T cd03431          15 RVLLEKRPEK-GLLAGLWEFPSVEWEEEA-DGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLARLEGDL-   88 (118)
T ss_pred             eEEEEECCCC-CCCCcceeCCCccccCCc-CHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEEEeCCC-
Confidence            8999999876 789999999999999888 8888888999998875   223345555556666666666665543210 


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                             .+..++.|++++++.+.
T Consensus        89 -------~~~~~~~W~~~eel~~~  105 (118)
T cd03431          89 -------LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             -------cCccccEEccHHHHhhC
Confidence                   23456789999888763

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=7.2e-09  Score=92.93  Aligned_cols=119  Identities=22%  Similarity=0.295  Sum_probs=85.0

Q ss_pred             ccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031           65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS  144 (259)
Q Consensus        65 ~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~  144 (259)
                      ..+++|...+++. ++  +|++++-....-...|.|-+|+|.++++| ++.++|+||++||||++....+++..-.....
T Consensus       113 sh~vgvg~~V~n~-~~--eVlVv~e~d~~~~~~~~wK~ptG~v~~~e-~i~~gavrEvkeetgid~ef~eVla~r~~H~~  188 (295)
T KOG0648|consen  113 SHRVGVGAFVLNK-KK--EVLVVQEKDGAVKIRGGWKLPTGRVEEGE-DIWHGAVREVKEETGIDTEFVEVLAFRRAHNA  188 (295)
T ss_pred             hhheeeeeeEecC-Cc--eeEEEEecccceeecccccccceEecccc-cchhhhhhhhHHHhCcchhhhhHHHHHhhhcc
Confidence            3567777777763 34  78887644443466789999999999999 99999999999999998777776654333222


Q ss_pred             hhc--ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          145 KYL--LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       145 ~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                      ...  ..-..|++.+.. ..+....+..|+..+.|+|+++..+...
T Consensus       189 ~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~qp~  233 (295)
T KOG0648|consen  189 TFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQPL  233 (295)
T ss_pred             hhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhcccc
Confidence            222  122234455544 4566677788999999999998887654

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.40  E-value=1.4e-06  Score=68.87  Aligned_cols=57  Identities=30%  Similarity=0.472  Sum_probs=45.2

Q ss_pred             EeecCCCceEEEEeeccccc--ccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc
Q 025031           74 LFEGDNGELRVILTKRASRL--STHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS  131 (259)
Q Consensus        74 l~~~~~g~~~vLL~kRs~~~--~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~  131 (259)
                      |++..+|.+.|||++-.-..  +..-|-|++|.|-...|| ++..||+||.-||+||.++
T Consensus        10 lYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gE-dp~~AArREf~EE~Gi~vd   68 (161)
T COG4119          10 LYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGE-DPWLAARREFSEEIGICVD   68 (161)
T ss_pred             EEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCc-CHHHHHHHHhhhhhceeec
Confidence            34446788899998754321  223478999999999999 9999999999999999764

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.31  E-value=6.6e-07  Score=69.64  Aligned_cols=97  Identities=23%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031           78 DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL  157 (259)
Q Consensus        78 ~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~  157 (259)
                      .+|  ++||.||... +.++|.|+||.--.+. + +..+.+.+.+.+..|+.....+.++.+.+.+++....+++|.+.+
T Consensus         7 ~~~--~~Ll~kRp~~-gll~GLwefP~~e~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~   81 (114)
T PF14815_consen    7 SQG--RVLLEKRPEK-GLLAGLWEFPLIESDE-E-DDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEV   81 (114)
T ss_dssp             TTS--EEEEEE--SS-STTTT-EE--EEE-SS-S--CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEE
T ss_pred             eCC--EEEEEECCCC-ChhhcCcccCEeCccC-C-CCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEe
Confidence            345  8999999987 7999999999977663 3 335555566668888887777788888888888888888888887


Q ss_pred             eccccCCCCCCccchhhhcccchhhhccc
Q 025031          158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .....       .+-....|++++++.+-
T Consensus        82 ~~~~~-------~~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   82 SADPP-------AEPEEGQWVSLEELDQY  103 (114)
T ss_dssp             E-SS-----------TTEEEEEGGGGGGS
T ss_pred             cCCCC-------CCCCCcEEEEHHHHhhC
Confidence            75321       14578899999998753

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=98.19  E-value=1.8e-06  Score=75.33  Aligned_cols=123  Identities=24%  Similarity=0.249  Sum_probs=89.7

Q ss_pred             ccCccceeEEEE-Eeec-CCCceEEEEeecccccccccceee-cCCCCCCCCCCCchhhhhHHHHHhhCCCCccee---e
Q 025031           62 TFRPKKAAVLVC-LFEG-DNGELRVILTKRASRLSTHSGEVS-LPGGKAEEGDEDDGETATREAKEEIGLDPSLVD---V  135 (259)
Q Consensus        62 ~~~~r~aaVli~-l~~~-~~g~~~vLL~kRs~~~~~~~G~ws-fPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~---~  135 (259)
                      .++.+..+|.|- .+.. ..+.+++++.+||.++..|||.|. ..||.+--|. .+.+||+.|..||..|+.....   -
T Consensus       126 lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~Nlv~  204 (306)
T KOG4313|consen  126 LFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVKNLVS  204 (306)
T ss_pred             eeeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHhccee
Confidence            356666777662 2222 345689999999999999999996 4799999999 9999999999999999874322   2


Q ss_pred             eeehhhhH--hhhcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          136 VTVIEPFL--SKYLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       136 l~~l~~~~--~~~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      .|..+.+.  +.+++ .-.-||+.+.-..++.|+++..||+..-.+++.+..+
T Consensus       205 ~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~  257 (306)
T KOG4313|consen  205 AGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVE  257 (306)
T ss_pred             cceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHH
Confidence            34444332  22221 1334677666666788899999999999999887764

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.81  E-value=2.7e-05  Score=67.12  Aligned_cols=59  Identities=31%  Similarity=0.453  Sum_probs=45.6

Q ss_pred             cCccceeEEEEEe-ecCCCc----------eEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhC
Q 025031           63 FRPKKAAVLVCLF-EGDNGE----------LRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG  127 (259)
Q Consensus        63 ~~~r~aaVli~l~-~~~~g~----------~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~G  127 (259)
                      +++.+||-=|+-. ..++++          ++++.+||+..     |+|++|||.+|+|| .+-+|..||..||.=
T Consensus       109 wGPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~-----~~WAiPGGmvdpGE-~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  109 WGPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDN-----GEWAIPGGMVDPGE-KVSATLKREFGEEAM  178 (275)
T ss_pred             cCCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCC-----CcccCCCCcCCchh-hhhHHHHHHHHHHHH
Confidence            4566666544332 223334          78899999887     89999999999999 999999999999964

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.73  E-value=2.8e-05  Score=66.06  Aligned_cols=117  Identities=23%  Similarity=0.206  Sum_probs=76.1

Q ss_pred             ccceeEEEEEeecCCCceEEEEeecccccccccceee-----cCCCCC----CCCCCCchhhhhHHHHHhhCCCCccee-
Q 025031           65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVS-----LPGGKA----EEGDEDDGETATREAKEEIGLDPSLVD-  134 (259)
Q Consensus        65 ~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~ws-----fPGG~v----e~gE~s~~~aA~REl~EE~GL~~~~i~-  134 (259)
                      .-+.|..|.+|+ .++  ++||++|+..+-.+||.|.     -|=+..    +........||.|-+.=|+||+.+.+. 
T Consensus        50 lLHRaFSVFlFn-s~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~p  126 (225)
T KOG0142|consen   50 LLHRAFSVFLFN-SKN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPP  126 (225)
T ss_pred             hhhheeeEEEec-Ccc--hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCH
Confidence            345677777887 455  8999999999889999883     343222    221114578999999999999766543 


Q ss_pred             ----eeeehhhhHh---hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          135 ----VVTVIEPFLS---KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       135 ----~l~~l~~~~~---~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                          .++.+.+...   ..|.+-.-|+-++..  +..+.+|++||+++.||..++|...
T Consensus       127 ee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelkel  183 (225)
T KOG0142|consen  127 EEFNFLTRIHYKAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKEL  183 (225)
T ss_pred             HHcccceeeeeecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHHH
Confidence                4444322211   123332333333333  3456788899999999999988653

>PRK10880 adenine DNA glycosylase; Provisional

Probab=97.55  E-value=0.00033  Score=65.30  Aligned_cols=148  Identities=11%  Similarity=0.105  Sum_probs=78.3

Q ss_pred             HHHHHHHhhccCCCCCChHHHHHHHHHhcCceeeeeccccccccccccccccCccceeEEEEEeecCCCceEEEEeeccc
Q 025031           12 LIVIAQHLRDYKGPPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRAS   91 (259)
Q Consensus        12 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~   91 (259)
                      |.++.+....-+-|-+..+.+...-..-..+.+.+++..+++++.       +.+...++| +..  ++  +++|.||..
T Consensus       184 lm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~-------~~~~~~~~~-~~~--~~--~~~l~~r~~  251 (350)
T PRK10880        184 MMDLGAMVCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTL-------PERTGYFLL-LQH--GD--EVWLEQRPP  251 (350)
T ss_pred             HHHhhHHhccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCC-------CeEEEEEEE-EEE--CC--EEEEEECCc
Confidence            444455555444455555555322111134455566665554432       223333333 222  34  899999987


Q ss_pred             ccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeeccccCCCCCCccc
Q 025031           92 RLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGE  171 (259)
Q Consensus        92 ~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~E  171 (259)
                      . +.+.|.|+||+.  +..+      .+++..|+.|+.......++.+.+.+++....++++.+.+.....   ..+   
T Consensus       252 ~-gl~~gl~~fP~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~---~~~---  316 (350)
T PRK10880        252 S-GLWGGLFCFPQF--ADEE------ELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTG---CMD---  316 (350)
T ss_pred             c-ChhhccccCCCC--cchh------hHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccc---ccC---
Confidence            6 789999999973  2211      246666888876433333455555556655556666544321100   011   


Q ss_pred             hhhhcccchhhhccc
Q 025031          172 VEEVFDAPLEMFLKD  186 (259)
Q Consensus       172 v~~v~wvpl~ell~~  186 (259)
                      .....|++++++.+-
T Consensus       317 ~~~~~w~~~~~~~~~  331 (350)
T PRK10880        317 EGNGLWYNLAQPPSV  331 (350)
T ss_pred             CcCCeEechHHhccc
Confidence            123359999888763

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=96.14  E-value=0.0018  Score=59.14  Aligned_cols=96  Identities=24%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH-hhhcceeeeEe-eEeecc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL-SKYLLRVVPVI-GILHNR  160 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-~~~~~~v~~~v-~~~~~~  160 (259)
                      ++||++--     .+.-|+||-|++..+| +..+||.||+.||+|.+....-.  ...... .-.+..+.-|+ .-+...
T Consensus        96 r~llv~g~-----qa~sw~fprgK~~kde-sd~~caiReV~eetgfD~skql~--~~e~Ie~nI~dq~~~~fIi~gvs~d  167 (348)
T KOG2937|consen   96 RCLLVKGW-----QASSWSFPRGKISKDE-SDSDCAIREVTEETGFDYSKQLQ--DNEGIETNIRDQLVRLFIINGVSED  167 (348)
T ss_pred             hhheeece-----ecccccccCccccccc-hhhhcchhcccchhhcCHHHHhc--cccCcccchhhceeeeeeeccceee
Confidence            67777632     2345999999999999 88999999999999998654211  100010 00111122222 112222


Q ss_pred             ccCCCCCCccchhhhcccchhhhcccc
Q 025031          161 KAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       161 ~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..+.++. -.|++.+.|.-++++....
T Consensus       168 ~~f~~~v-~~eis~ihW~~l~~l~~t~  193 (348)
T KOG2937|consen  168 TNFNPRV-RKEISKIHWHYLDHLVPTD  193 (348)
T ss_pred             eecchhh-hccccceeeeehhhhcccc
Confidence            2233332 2689999999999985543

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=95.92  E-value=0.03  Score=46.45  Aligned_cols=102  Identities=19%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             EEEEeecccccc--cccceeec-CCCCCCCCC-CCchh-----hhhHHHHHhhCCC---CcceeeeeehhhhHhhhccee
Q 025031           83 RVILTKRASRLS--THSGEVSL-PGGKAEEGD-EDDGE-----TATREAKEEIGLD---PSLVDVVTVIEPFLSKYLLRV  150 (259)
Q Consensus        83 ~vLL~kRs~~~~--~~~G~wsf-PGG~ve~gE-~s~~~-----aA~REl~EE~GL~---~~~i~~l~~l~~~~~~~~~~v  150 (259)
                      +||+..|-..-+  .--++.++ -|||+..++ ++..+     .+.||+.||+++.   ...++.+|.+..-...-+...
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH  152 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH  152 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence            899999976532  22356777 599999877 22222     2679999999998   445666776644322222211


Q ss_pred             eeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          151 VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       151 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      .-.++.+.... -....-..+.-++.|+.+.++.+
T Consensus       153 iG~lf~~~~k~-ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         153 IGALFLGRGKF-NDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             EEEEEEeeccc-cceeeeecceeeeeeeeHHHHHH
Confidence            12222222211 01111224455788999988875

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=95.22  E-value=0.032  Score=47.49  Aligned_cols=59  Identities=24%  Similarity=0.398  Sum_probs=42.8

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP  130 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~  130 (259)
                      +.|+..-.|+++. ..+-++|||.+....      .+-+|||++.+|| +..++..|.+.+-+|...
T Consensus        41 GmRrsVe~Vllvh-~h~~PHvLLLq~~~~------~fkLPGg~l~~gE-~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   41 GMRRSVEGVLLVH-EHGHPHVLLLQIGNT------FFKLPGGRLRPGE-DEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             SSEEEEEEEEEEE-ETTEEEEEEEEETTT------EEE-SEEE--TT---HHHHHHHHHHHHHB-SS
T ss_pred             CCceEEEEEEEEe-cCCCcEEEEEeccCc------cccCCccEeCCCC-ChhHHHHHHHHHHcCCCc
Confidence            5577666777776 356789999996543      6999999999999 889999999999999864

...

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=93.88  E-value=0.2  Score=45.33  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             EEEEeecccccccccceeecCCC
Q 025031           83 RVILTKRASRLSTHSGEVSLPGG  105 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG  105 (259)
                      ++||++|... +.+.|.|+||+.
T Consensus       240 ~~~~~~r~~~-~~~~gl~~~p~~  261 (275)
T TIGR01084       240 EVLLEQRPEK-GLWGGLYCFPQF  261 (275)
T ss_pred             eEEEEeCCCC-chhhccccCCCC
Confidence            8999999876 688999999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=93.23  E-value=0.18  Score=46.69  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      ++.+..+++..  +|  .++|.+|... +.+.|.|+||....+.+        ..+..-+.|+..   +.++.+.+.+++
T Consensus       235 ~~~~~~~~~~~--~~--~~~l~kr~~~-gl~~gl~~fP~~e~~~~--------~~~~~~~~~~~~---~~~~~~~H~fth  298 (342)
T COG1194         235 RRFAAFLILNR--DG--EVLLEKRPEK-GLLGGLWCFPQFEDEAD--------LLDWLAADGLAA---EPLGAFRHTFTH  298 (342)
T ss_pred             hheeeEEEEcc--Cc--chhhhhCccc-Cceecccccccccccch--------hhhHhhhccccc---ccccceeeeeeE
Confidence            44444444333  34  7899888876 78999999998765431        222233334433   345555555555


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      +...+. +.+...         . ..- +..|++++++..
T Consensus       299 ~~l~i~-~~a~~~---------~-~~~-~~~w~~~~~~~~  326 (342)
T COG1194         299 FRLTIE-LRASAS---------L-VLS-DGRWYNLSDLES  326 (342)
T ss_pred             EEEEEE-EEeecc---------c-CCC-Cceecccccccc
Confidence            555555 222211         0 111 678999888764

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=92.59  E-value=0.22  Score=41.67  Aligned_cols=57  Identities=21%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCC
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL  128 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL  128 (259)
                      +.|++.-.|+++. +..-++|||.+=...      ..-+|||.+++|| +-.+...|-+-|-+|=
T Consensus        67 gmRrsvegvlivh-eH~lPHvLLLQig~t------f~KLPGG~L~pGE-~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   67 GMRRSVEGVLIVH-EHNLPHVLLLQIGNT------FFKLPGGRLRPGE-DEADGLKRLLTESLGR  123 (221)
T ss_pred             hhhheeeeeEEEe-ecCCCeEEEEeeCCE------EEecCCCccCCCc-chhHHHHHHHHHHhcc
Confidence            4566666666665 334468888774433      5789999999999 8899999999999993

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=88.09  E-value=0.88  Score=41.45  Aligned_cols=83  Identities=20%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             cCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHhhhcceeeeEeeEeecccc---CCCCCCccchhhhc
Q 025031          102 LPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLSKYLLRVVPVIGILHNRKA---FKPTPNPGEVEEVF  176 (259)
Q Consensus       102 fPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~---~~~~~~~~Ev~~v~  176 (259)
                      +-.|.++..= |..+-|.||..||+|.+..  .++.+..+-.-...++-.-+-|...+.+...   .--.-+.+|..++.
T Consensus       288 Lcag~Vd~p~-s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv  366 (405)
T KOG4432|consen  288 LCAGRVDDPF-SDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVV  366 (405)
T ss_pred             eecccCCCCc-ccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEE
Confidence            3456777654 7788999999999999754  3444444333333344444445555554321   11123456888888


Q ss_pred             ccchhhhcc
Q 025031          177 DAPLEMFLK  185 (259)
Q Consensus       177 wvpl~ell~  185 (259)
                      -++++++..
T Consensus       367 ~lsle~a~~  375 (405)
T KOG4432|consen  367 RLSLEDAPS  375 (405)
T ss_pred             EechhhhhH
Confidence            899988754

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=87.73  E-value=0.47  Score=43.14  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=55.5

Q ss_pred             CccceeEEEEEeecCCCceEEEEeeccccc---ccc----c----------------c-eeecCCCCCCCCCCCchhhhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRL---STH----S----------------G-EVSLPGGKAEEGDEDDGETAT  119 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~---~~~----~----------------G-~wsfPGG~ve~gE~s~~~aA~  119 (259)
                      ..+-.+|.|+|++.+-.  ++||++.-+..   ..|    +                | .+++-||.+|..- ++.+.|.
T Consensus        23 ~q~~~~v~ill~~r~~e--q~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~-s~~eia~   99 (405)
T KOG4432|consen   23 NQKMSSVSILLFHRDLE--QFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKEL-SPREIAS   99 (405)
T ss_pred             HhhccceEEEEEccchh--hhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeecccccccc-CHHHHhH
Confidence            44567888888875433  56665432210   001    0                1 2356689999875 9999999


Q ss_pred             HHHHHhhCCCCcceeeeeehhhhH--hhhcceeeeEeeEeec
Q 025031          120 REAKEEIGLDPSLVDVVTVIEPFL--SKYLLRVVPVIGILHN  159 (259)
Q Consensus       120 REl~EE~GL~~~~i~~l~~l~~~~--~~~~~~v~~~v~~~~~  159 (259)
                      .|+.||.|..+..-.++..+....  ..++...+.|.+.+++
T Consensus       100 eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e  141 (405)
T KOG4432|consen  100 EEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE  141 (405)
T ss_pred             HHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence            999999999876554444433221  1123334556666554

>PF14443 DBC1: DBC1

Probab=85.17  E-value=0.92  Score=36.18  Aligned_cols=52  Identities=25%  Similarity=0.274  Sum_probs=37.5

Q ss_pred             eEEEEeecccccccccceeec--CCCCCCCCCCCchhhhhHHHHHhhCCCCcce
Q 025031           82 LRVILTKRASRLSTHSGEVSL--PGGKAEEGDEDDGETATREAKEEIGLDPSLV  133 (259)
Q Consensus        82 ~~vLL~kRs~~~~~~~G~wsf--PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i  133 (259)
                      +++|+.+|.+....-.|.|+-  =||-.+.+...+..||+|=++|-|||+.+.-
T Consensus         8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~C   61 (126)
T PF14443_consen    8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNC   61 (126)
T ss_pred             eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhc
Confidence            456666666544444577854  4666666666789999999999999998653

>PRK13910 DNA glycosylase MutY; Provisional

Probab=83.34  E-value=3.2  Score=37.83  Aligned_cols=71  Identities=11%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +++|.||.  .+.+.|.|+||+.  +  + .            .+...   ..++.+.+.+++....++++.+.+..   
T Consensus       198 ~~ll~kr~--~~l~~gl~~fP~~--~--~-~------------~~~~~---~~~~~~~H~fTH~~~~~~~~~~~~~~---  252 (289)
T PRK13910        198 QIALEKIE--QKLYLGMHHFPNL--K--E-N------------LEYKL---PFLGAIKHSHTKFKLNLNLYLAAIKD---  252 (289)
T ss_pred             EEEEEECC--CchhcccccCCCC--h--h-h------------hcccc---cccCceEEEEEeEEEEEEEEEEEecc---
Confidence            89999995  3689999999963  2  1 1            11111   12344455556666666666554321   


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                           .   -....|++++++.+-
T Consensus       253 -----~---~~~~~w~~~~~~~~~  268 (289)
T PRK13910        253 -----L---KNPIRFYSLKDLETL  268 (289)
T ss_pred             -----C---CccceEecHHHhhhc
Confidence                 0   123479998887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
1nqy_A	194	The Structure Of A Coa Pyrophosphatase From D. Radi		5e-07

>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans Length = 194

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPXXXXXXXXXXXXXTATREAKEE 125
           ++AAVLV L      + RV+LT R+S L TH G+++ P              A REA+EE
Sbjct: 34  RRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQ-AALREAQEE 90
Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL--HNRKAFKPTPNPGEVEEVFDAPLEMF 183
           + LDP+ V ++  ++   +     V PV+G +        + TP   EV ++    L   
Sbjct: 91  VALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTP---EVAQIITPTLAEL 147
Query: 184 ----LKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAIL 225
               L  E R + +    G +  L+ + +   +    IWG+TA +L
Sbjct: 148 RAVPLVRERRTLPD----GTEVPLYRYPWRGLD----IWGMTARVL 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-62
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	5e-09
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	7e-09
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	4e-08
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	4e-08
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	4e-08
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	7e-08
3exq_A	161	Nudix family hydrolase; protein structure initiati	1e-07
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	1e-07
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	2e-07
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	2e-07
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-07
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	2e-07
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	2e-07
3grn_A	153	MUTT related protein; structural genomics, hydrola	3e-07
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	4e-07
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	6e-07
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	6e-07
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	8e-07
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	9e-07
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	1e-06
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	1e-06
2fb1_A	226	Conserved hypothetical protein; structural genomic	2e-06
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-06
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	3e-06
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	3e-06
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	4e-06
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	4e-06
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	4e-06
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	5e-06
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	5e-06
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	5e-06
2b06_A	155	MUTT/nudix family protein; structural genomics, P	6e-06
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	1e-05
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-05
3f13_A	163	Putative nudix hydrolase family member; structural	2e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	3e-05
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	4e-05
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	6e-05
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	6e-05
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	8e-05
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-04
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	1e-04
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	3e-04
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	5e-04
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	9e-04

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score =  192 bits (491), Expect = 3e-62
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 48  GSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKA 107
            +   +  T    +    ++AAVLV L      + RV+LT R+S L TH G+++ PGG  
Sbjct: 16  WALWLSGRTRTALELPHYRRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSL 73

Query: 108 EEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTP 167
           + G+    + A REA+EE+ LDP+ V ++  ++   +     V PV+G +   +A     
Sbjct: 74  DAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIA-PEALDTLR 131

Query: 168 NPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVR 227
              EV ++    L         R       G +  L+ + +        IWG+TA +L  
Sbjct: 132 VTPEVAQIITPTLAELRAVPLVRERRTLPDGTEVPLYRYPWRG----LDIWGMTARVLHD 187

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 59  YAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETA 118
           Y ++   ++  ++  L + D      +L K A       G+ +L GG  E G E   E  
Sbjct: 19  YFQSNAMRQRTIVCPLIQNDG---CYLLCKMADNRGVFPGQWALSGGGVEPG-ERIEEAL 74

Query: 119 TREAKEEIGLDPSLVDVVTVIEP 141
            RE +EE+G    L D+      
Sbjct: 75  RREIREELGEQLILSDITPWTFR 97

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 54.9 bits (131), Expect = 7e-09
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 9/155 (5%)

Query: 58  RYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGET 117
           +         A       +     + V +  R         + S P GK E+  E     
Sbjct: 14  KAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKY-----DDWSWPKGKLEQN-ETHRHA 67

Query: 118 ATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRK---AFKPTPNPGEVEE 174
           A RE  EE G    L   +  +E  LS+   +         + K    +   P   +  E
Sbjct: 68  AVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAE 127

Query: 175 VFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYE 209
                     + +   + +  W+  +      ++ 
Sbjct: 128 HLLDAFGPVHRADVGEINDIVWVSVREARKILSHS 162

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 78  DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS-LVDVV 136
           +    +++L +      T S   S P GK  +  E+D +   RE KEEIG D +  +D  
Sbjct: 13  NENLSKILLVQG-----TESDSWSFPRGKISKD-ENDIDCCIREVKEEIGFDLTDYIDDN 66

Query: 137 TVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV 175
             IE  +     ++  + G+      FKP     E++++
Sbjct: 67  QFIERNIQGKNYKIFLISGVSEVFN-FKPQVR-NEIDKI 103

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 50  QESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEE 109
           +           T +P+       + +G     R++L KR    +  +G   LPGGK + 
Sbjct: 13  EAQTQGPGSMQHTEQPRVGCGAAIVRDG-----RILLIKRKR--APEAGCWGLPGGKVDW 65

Query: 110 GDEDDGETATREAKEEIGLDPSLVDVVTVIE 140
             E       RE +EE+G+      ++ V++
Sbjct: 66  L-EPVERAVCREIEEELGIALERATLLCVVD 95

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 64  RPKKAAVLVCLF----EGDNGELRVILTKRA-----SRLSTHSGEVSLPGGKAEEGDEDD 114
            P      + L           L ++L KR+      + +   G+ ++PGG  +E +E  
Sbjct: 24  TPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDE-NESA 82

Query: 115 GETATREAKEEIGLDPSLVDVVTV 138
            + A RE +EE  L    +    V
Sbjct: 83  EQAAERELEEETSLTDIPLIPFGV 106

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
            P  A  ++           ++L +R          ++LPGG  E G E   E A RE +
Sbjct: 7   TPLLATDVIIRLWDGENFKGIVLIERK----YPPVGLALPGGFVEVG-ERVEEAAAREMR 61

Query: 124 EEIGLDPSLVDVVTV 138
           EE GL+  L  ++ V
Sbjct: 62  EETGLEVRLHKLMGV 76

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
           +P +   +V + + +    RV++  + +         S PGG  E G E     A RE  
Sbjct: 7   QPVELVTMVMVTDPETQ--RVLVEDKVNVP--WKAGHSFPGGHVEVG-EPCATAAIREVF 61

Query: 124 EEIGLDPSLVDVVTVIE 140
           EE GL  S V      E
Sbjct: 62  EETGLRLSGVTFCGTCE 78

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 22/117 (18%)

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           + VLV     +NG  +V+L K         G    PGG  E   E   E   RE +EE G
Sbjct: 5   SGVLV-----ENG--KVLLVKHKRL-----GVYIYPGGHVEHN-ETPIEAVKREFEEETG 51

Query: 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA---------FKPTPNPGEVEEV 175
           +    +     I    +      + ++  +              +      G+++  
Sbjct: 52  IVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNG 108

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 79  NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV 138
           +   R IL  +             PGG +E   ED G+TA RE  EE G+      V+++
Sbjct: 35  DESTRKILVVQDRN--KLKNMWKFPGGLSEPE-EDIGDTAVREVFEETGIKSEFRSVLSI 91

Query: 139 IEPFLSKYLLRVVPV-IGILHNRKAFKPTPNPGEVEEV--FDAPLEMFLKDENRRVEEKE 195
            +   +        + I       +F       E          L    K EN       
Sbjct: 92  RQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWM--DLNDLAKTENTTPITSR 149

Query: 196 WMGEKYLLHYFN 207
               + LL+ + 
Sbjct: 150 V--ARLLLYGYR 159

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 28/185 (15%)

Query: 1   MESSSKSNIQRLIVIAQHLRDY-KGPPSTYDQME--QKIRETSGKVTSLVGSQESASPTV 57
           M       ++++  IAQ    Y K     YD  E  Q++R+ S  + S      + +   
Sbjct: 1   MTIKWIDWVKQIQSIAQAGLTYSKDV---YDI-ERFQQLRDISISMMS----HYTKTDWE 52

Query: 58  RYAKTFRPK------KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGD 111
              K F  +      K  +   +F+ +    +++  K         G+ +LPGG A+ G 
Sbjct: 53  VVEKLFASETGYQTPKVDIRAVVFQNE----KLLFVKEK-----SDGKWALPGGWADVG- 102

Query: 112 EDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPG- 170
               E A +E  EE G +     ++ + +    +       V  I    +          
Sbjct: 103 YTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSI 162

Query: 171 EVEEV 175
           E EEV
Sbjct: 163 ETEEV 167

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 58  RYAKTFRPKKAAVLVCL-FEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGE 116
              +  +P     +V L +  +  +L+V+L +R           +LPGG     +E   +
Sbjct: 31  ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKG--HPFRNSWALPGGFVNR-NESTED 87

Query: 117 TATREAKEEIGLD---PSLVDVVTVIEPF 142
           +  RE KEE G+     ++  + +   P 
Sbjct: 88  SVLRETKEETGVVISQENIEQLHSFSRPD 116

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp} Length = 232

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 9/188 (4%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
             +KAA LV + +G N ++ V++ +RA  +    G V+ PGG A+  D +  + A     
Sbjct: 6   DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPV 65

Query: 124 EEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183
                D   + V  + E             IG L   +  + T     +     A L   
Sbjct: 66  CAEDDDDPALAVTALRETAEE---------IGWLLAVRDGEGTKMDTPLAPDEQADLCKG 116

Query: 184 LKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASVVYQKPPAFEEGN 243
               +  +  +    +  LL             +   T   L     +   +    E   
Sbjct: 117 GDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDA 176

Query: 244 PKFKFPKD 251
             +   +D
Sbjct: 177 ALWTPARD 184

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
           +P   +V   +          +L +R+    T++G+  LPGGK     E   E   RE  
Sbjct: 5   KPYIISVYALIRNEKG---EFLLLRRSENSRTNAGKWDLPGGKVNPD-ESLKEGVAREVW 60

Query: 124 EEIGLDPSLVDVVTVIE 140
           EE G+     D+   + 
Sbjct: 61  EETGITMVPGDIAGQVN 77

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 67  KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI 126
           KAA LV ++    G++  +L + +          + P G  + G ED+ + A RE KEE 
Sbjct: 4   KAAGLV-IYRKLAGKIEFLLLQASYP----PHHWTPPKGHVDPG-EDEWQAAIRETKEEA 57

Query: 127 GLDPSLVDVVTVIE 140
            +    + +     
Sbjct: 58  NITKEQLTIHEDCH 71

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 61  KTFRPKKAAVLVC---LFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGET 117
             F   K  + V    + +    +   +L K        S     P GK ++  E D + 
Sbjct: 92  DDFLRYKTRIPVRGAIMLDMSMQQ--CVLVKGWK----ASSGWGFPKGKIDKD-ESDVDC 144

Query: 118 ATREAKEEIGLDPS-LVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV- 175
           A RE  EE G D S  ++    I+  +    +R+  + GI  + + F+      E+ ++ 
Sbjct: 145 AIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTR-FESRTR-KEISKIE 202

Query: 176 ---FDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKK 214
                  L  F K++ + ++ K +M   +L     + +K   
Sbjct: 203 WHNLMD-LPTFKKNKPQTMKNKFYMVIPFLAPLKKWIKKRNI 243

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
            VL       +    V+L + A R     G   LP G+ E G E   E   RE KEE GL
Sbjct: 22  VVLAVFLSEQD---EVLLIQEAKR--ECRGSWYLPAGRMEPG-ETIVEALQREVKEEAGL 75

Query: 129 DPSLVDVVTVIE 140
                 +++V E
Sbjct: 76  HCEPETLLSVEE 87

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 78  DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT 137
           DN  +  +L +     S      + P G  E G EDD ETA R  +EE G++   + ++ 
Sbjct: 25  DNNAIEFLLLQA----SDGIHHWTPPKGHVEPG-EDDLETALRATQEEAGIEAGQLTIIE 79

Query: 138 VIE 140
             +
Sbjct: 80  GFK 82

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 61  KTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATR 120
            T++ + AA ++     +      ++  +A       G   LPGG+ E   E   E   R
Sbjct: 13  LTYQTRYAAYIIVSKPEN----NTMVLVQAPN-----GAYFLPGGEIEGT-ETKEEAIHR 62

Query: 121 EAKEEIGLDPSLVDVVTVIEPF 142
           E  EE+G+   +   +   + +
Sbjct: 63  EVLEELGISVEIGCYLGEADEY 84

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 59  YAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETA 118
               F+P    V   +   D     +++ +R +         +LPGG  E   E   +  
Sbjct: 200 LKAPFKPNFVTVDALVIVND----HILMVQRKAH--PGKDLWALPGGFLECD-ETIAQAI 252

Query: 119 TREAKEEIGLDPSLVDVVTVIEPF 142
            RE  EE  ++ +   +       
Sbjct: 253 IRELFEETNINLTHEQLAIAKRCE 276

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 25  PPSTYDQMEQKIRETSGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRV 84
           PP+  D ++   +               A         + P        + +       V
Sbjct: 161 PPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQA----GHV 216

Query: 85  ILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF 142
           ++ +R ++     G ++LPGG  ++  E   E   RE KEE  L   L  +   I   
Sbjct: 217 LMVRRQAK--PGLGLIALPGGFIKQN-ETLVEGMLRELKEETRLKVPLPVLRGSIVDS 271

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
            +   +F  + GE+ ++L KR        GE SL GG  ++ DE   + A R   E  GL
Sbjct: 15  GIDCIIFGFNEGEISLLLLKRNF--EPAMGEWSLMGGFVQK-DESVDDAAKRVLAELTGL 71

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPV 153
           +   ++ V            RVV +
Sbjct: 72  ENVYMEQVGAFGAIDRDPGERVVSI 96

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 67  KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI 126
           +      + + D    +V+L ++  R     G    PGGK E G E   ET  RE  EE 
Sbjct: 4   QRVTNCIVVDHD----QVLLLQKPRR-----GWWVAPGGKMEAG-ESILETVKREYWEET 53

Query: 127 GLDPSLVDVVTVIE 140
           G+     ++  +  
Sbjct: 54  GITVKNPELKGIFS 67

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 96  HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVV 151
             G    P G  E G E   E A RE  EE G+   ++  +        K + R V
Sbjct: 22  RMGFWVFPKGHPEPG-ESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 46/332 (13%), Positives = 80/332 (24%), Gaps = 126/332 (37%)

Query: 2   ESSSKSNIQRLIVIAQHLRDYKGPP--STYD----QMEQKIRET---------------- 39
           E    S + R+  I Q  R Y      + Y+    Q   K+R+                 
Sbjct: 101 EQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 40  -SGKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFE--------GDNGELRVILTKRA 90
            SGK T +                    K   + C  +         +      +L +  
Sbjct: 160 GSGK-TWVA------------LDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVL-EML 202

Query: 91  SRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP---SLV---DV--VTVIEPF 142
            +L                  +    +   E +  +   P    L+   +V        F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 143 L--SKYLL--RVVPVIGIL-----------HNRKAFKPTPNPGEVEEVF---------DA 178
               K LL  R   V   L           H+         P EV+ +          D 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDL 318

Query: 179 PLEM-------------FLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAIL 225
           P E+              ++D         W       H  N ++               
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLAT-----W---DNWKHV-NCDKLTT------------ 357

Query: 226 VRAASVVYQKPPAFEEGNPKFK----FPKDVN 253
           +  +S+   +P  + +    F     FP   +
Sbjct: 358 IIESSLNVLEPAEYRK---MFDRLSVFPPSAH 386

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 61  KTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATR 120
             F  +  A++V      N   ++++TK         G+    GG  +   E   +   R
Sbjct: 16  TVFGVRATALIV-----QNH--KLLVTKDK-------GKYYTIGGAIQVN-ESTEDAVVR 60

Query: 121 EAKEEIGLDPSLVDVVTVIEPF 142
           E KEE+G+      +  V+E  
Sbjct: 61  EVKEELGVKAQAGQLAFVVENR 82

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 58  RYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGET 117
            Y      K+AA L    E +     V+L       S H     +PGG  E   E+    
Sbjct: 33  TYDGDGYKKRAACLCFRSESEE---EVLLVSS----SRHPDRWIVPGGGMEPE-EEPSVA 84

Query: 118 ATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPV 153
           A RE  EE G+  +L  +V + E    K+   V  +
Sbjct: 85  AVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVL 120

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 70  VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD 129
           VLV  F       +  +  R       +       G  E+  E   ETA RE+ EE+ LD
Sbjct: 8   VLVIPFIKTEANYQFGVLHRT-----DADVWQFVAGGGEDE-EAISETAKRESIEELNLD 61

Query: 130 PSLVDVVTVIEPFLSKYLLR 149
             +          +  +   
Sbjct: 62  VDVKMYSLDSHASIPNFHFS 81

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 60  AKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETA 118
             TF  +   V +  + G   +L + + +R+   S   G++ ++  G          +  
Sbjct: 111 VPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPAD-LSLRQNL 169

Query: 119 TREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHN-----RKAFKPTPNPGEVE 173
            +E  EE  L  +L      +                 L        + F+P    GE+ 
Sbjct: 170 IKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMA 229

Query: 174 EVFDAPLE 181
           +    P  
Sbjct: 230 DFMLWPAA 237

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
              +  V   L E +    +V+L K+       + + SLPGG+ E G E   E   RE +
Sbjct: 20  NIMQVRVTGILIEDE----KVLLVKQKVA----NRDWSLPGGRVENG-ETLEEAMIREMR 70

Query: 124 EEIGLDPSLVDVVTVIE 140
           EE GL+  +  ++ V +
Sbjct: 71  EETGLEVKIKKLLYVCD 87

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 22/144 (15%)

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLS--THSGEVSLPGGKAEEGDEDDGETATREAKEE 125
            A  V L         ++L +          +G   +P G  E+G E+  + A REA EE
Sbjct: 14  RAAGVVLLNERG---DILLVQEKGIPGHPEKAGLWHIPSGAVEDG-ENPQDAAVREACEE 69

Query: 126 IGLDPSLVDVVTVIE-PF-----LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV---- 175
            GL    V  +      F     + +++    P  G               E+ E     
Sbjct: 70  TGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQT------LAPAFTDEIAEASFVS 123

Query: 176 FDAPLEMFLKDENRRVEEKEWMGE 199
            +   +++   + R  + K +  +
Sbjct: 124 REDFAQLYAAGQIRMYQTKLFYAD 147

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 83  RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF 142
           +V+L          + ++   GG  E  +E   E   REAKEE GL+ +L + + +    
Sbjct: 18  KVLLHLHKK-----AKKMLPLGGHIE-VNELPEEACIREAKEEAGLNVTLYNPIDINLKK 71

Query: 143 LSKYLLRVVPV 153
                   + +
Sbjct: 72  SCDLSGEKLLI 82

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 59  YAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGG-KAEEGDEDDGET 117
             K F+ +   V   LF   + +L+V+L +R++      G   LPGG   E  DE   +T
Sbjct: 14  DPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLPGGFIDETCDESLEQT 71

Query: 118 ATREAKEEIGLDPSLVDVVTVIE 140
             R+  E+  + P  ++ +  + 
Sbjct: 72  VLRKLAEKTAVVPPYIEQLCTVG 94

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
           +      +  + + +    RV++  RA   +      + PGG  E   E   E+  RE  
Sbjct: 5   QLTILTNICLIEDLETQ--RVVMQYRAPENN-RWSGYAFPGGHVEND-EAFAESVIREIY 60

Query: 124 EEIGLD---PSLVDVVTVIEPFLSKYLLRV 150
           EE GL    P LV +         +Y++  
Sbjct: 61  EETGLTIQNPQLVGIKNWPLDTGGRYIVIC 90

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 26/181 (14%)

Query: 41  GKVTSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEV 100
           G             P   +       +   LV + +      RV+L  +       +G  
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMGA---SRLYTLVLVLQPQ----RVLLGMKKRGF--GAGRW 52

Query: 101 SLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNR 160
           +  GGK +EG E   + A RE +EE GL    +  V  I  F         P +  +H  
Sbjct: 53  NGFGGKVQEG-ETIEDGARRELQEESGLTVDALHKVGQIV-FEFVGE----PELMDVHVF 106

Query: 161 KAFKPTPNPGEVEEVFDAPLEMFLKDENRRVE----EKEWM----GEKYLLHYFNYEQKN 212
                   P E +E        F  D+    +    +  W      +K    YF ++ ++
Sbjct: 107 CTDSIQGTPVESDE---MRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQD 163

Query: 213 K 213
            
Sbjct: 164 T 164

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 62  TFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATRE 121
           T++P      V   +      + +L +   R    + +++ P G  E G E   +  +RE
Sbjct: 4   TWKPNVTVAAVIEQDD-----KYLLVEEIPR--GTAIKLNQPAGHLEPG-ESIIQACSRE 55

Query: 122 AKEEIGLDPSLVDVVTV 138
             EE G       +  +
Sbjct: 56  VLEETGHSFLPEVLTGI 72

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
              + A  +           V++T          G  +LPGGKA  G E   +   RE +
Sbjct: 14  DLARRATAIIEMPD-----GVLVTASRG------GRYNLPGGKANRG-ELRSQALIREIR 61

Query: 124 EEIGLDPSLVDVVTVIE-PFLSKYLLRVV 151
           EE GL  + +  +     PF +  +   +
Sbjct: 62  EETGLRINSMLYLFDHITPFNAHKVYLCI 90

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
              ++ + +       ++L  +  R       +  P G  ++G E     A RE +EE G
Sbjct: 63  GVAVIPVLQRTLHYECIVLV-KQFRPPMGGYCIEFPAGLIDDG-ETPEAAALRELEEETG 120

Query: 128 LDPSLVDVVTVI--EPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVE--EVFDAPLE 181
               + +    +  +P LS   + +V V     + +  +P P PG+ E  EV   P  
Sbjct: 121 YKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKN 178

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIG 127
            V   L        ++ + +R+   S     + +  GG  + G E   E   REA+EE+ 
Sbjct: 36  VVNAFLRNSQG---QLWIPRRSPSKSLFPNALDVSVGGAVQSG-ETYEEAFRREAREELN 91

Query: 128 LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV 175
           ++   +    +      +  L     + +   R    P  NP ++   
Sbjct: 92  VEIDALSWRPLASFSPFQTTLSS--FMCVYELRSDATPIFNPNDISGG 137

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 63  FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREA 122
           F+P      V   EG     + ++ +            + P G  E   E   E A RE 
Sbjct: 2   FKPHVTVACVVHAEG-----KFLVVEETIN---GKALWNQPAGHLEAD-ETLVEAAAREL 52

Query: 123 KEEIGLD---PSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV 175
            EE G+       + +   I P  + +L  +      +   +     P+  +++  
Sbjct: 53  WEETGISAQPQHFIRMHQWIAPDKTPFLRFLF----AIELEQICPTQPHDSDIDCC 104

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Length = 246

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRL--------STHSGEVSLPGGKAEEGDEDDGETAT- 119
           A  V LF   N + R+++ +R+            + S        + EE D      A  
Sbjct: 72  AFSVVLF---NTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQ 128

Query: 120 REAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIG------ILHNRKAFKPTPNPGEVE 173
           R  + E+G+    +    ++   +  +  +   + G      +L  RK     P+P E +
Sbjct: 129 RRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETK 188

Query: 174 EVFDAPLEMFLKDENRRVEEKE----WMG---EKYLLHYFNYEQKNKKY 215
            +     E   +   R    +     W+    E++L  ++ +      +
Sbjct: 189 SILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYRWWPHLDDVTPF 237

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 67  KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI 126
           K  V       +    +V+L KRA     + G+ +LP G  E   E   + A RE  EE 
Sbjct: 40  KVIVGCIPEWEN----KVLLCKRAIA--PYRGKWTLPAGFMENN-ETLVQGAARETLEEA 92

Query: 127 GLDPSLVDVVTV 138
                + ++  V
Sbjct: 93  NARVEIRELYAV 104

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 21/132 (15%)

Query: 78  DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD---PSLVD 134
           +    + ++              +  GG ++  ++D  + A +E KEE G+    P L  
Sbjct: 54  NKERNKFLMIHHNI-----YNSWAWTGGHSD-NEKDQLKVAIKELKEETGVKNPTPLLDK 107

Query: 135 VVTVIEPFLSKYLLRVVPVIGILHNRKAF--------KPTPNPGEVEEV----FDAPLEM 182
              +    ++ ++ R   V   LH    +               E   V    F+   + 
Sbjct: 108 AFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKY 167

Query: 183 FLKDENRRVEEK 194
             +     + EK
Sbjct: 168 CSEPHMIPIYEK 179

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 79  NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD 129
           N     +L KR +      G   +PGG+ ++  E       R    E+GL 
Sbjct: 27  NSRGEFLLGKRTN--RPAQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLR 74

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 70  VLVCLFEGDNGELRVILTKRASRLSTHSG---EVSLPGGKAEEGDEDDGETATREAKEEI 126
           V+  +        + +  +R     +++    E   PGGK EEG E   E   RE  EE+
Sbjct: 8   VVAAVIRLGE---KYLCVQRGQTKFSYTSFRYE--FPGGKVEEG-ESLQEALQREIMEEM 61

Query: 127 GLDPSLVDVVTVIE 140
                + + +  + 
Sbjct: 62  DYVIEVGEKLLTVH 75

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
            PK         E      +++L +         G  SLPGG  +   +   +   +E K
Sbjct: 68  TPKLDTRAAIFQED-----KILLVQEND------GLWSLPGGWCDVD-QSVKDNVVKEVK 115

Query: 124 EEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPG-EVEEV 175
           EE GLD     VV +++   +        V  +    +       P  E    
Sbjct: 116 EEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNSETVAS 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.96
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.78
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.78
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.75
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.75
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.75
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.74
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.74
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.74
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.74
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.73
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.73
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.73
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.73
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.73
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.72
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.72
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.72
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.71
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.71
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.7
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.7
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.7
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.7
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.7
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.7
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.7
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.7
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.7
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.69
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.69
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.69
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.69
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.69
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.69
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.69
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.68
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.68
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.67
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.67
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.67
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.67
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.66
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.66
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.65
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.65
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.65
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.64
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.64
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.64
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.63
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.63
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.62
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.62
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.61
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.61
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.6
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.6
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.6
3f13_A	163	Putative nudix hydrolase family member; structural	99.59
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.59
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.58
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.58
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.58
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.56
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.56
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.55
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.55
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.52
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.51
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.51
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.5
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.44
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.32
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.91
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.85
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.52

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.96  E-value=1.9e-30  Score=218.77  Aligned_cols=162  Identities=28%  Similarity=0.435  Sum_probs=120.1

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      ..+.++|+|++ + .+|+.+|||++|+..++.++|.|+||||++|.|| ++.+||+||++|||||.+..+..++.+....
T Consensus        32 ~~~~~~~~v~i-~-~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~  108 (194)
T 1nqz_A           32 HYRRAAVLVAL-T-READPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVF  108 (194)
T ss_dssp             -CEEEEEEEEE-E-SSSSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCEE
T ss_pred             CCceEEEEEEE-e-cCCCeEEEEEEecCCCCCCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEccCcc
Confidence            34566776666 4 4555689999999876788999999999999999 9999999999999999999999888877655


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhh-cccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhH
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF-LKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITA  222 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el-l~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa  222 (259)
                      ...+..++.|++.+..... ....+.+|+.++.|++++++ .+..++....+ +.+..+.+++|.+    +++.|||+||
T Consensus       109 ~~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~iWg~ta  182 (194)
T 1nqz_A          109 TPVGFHVTPVLGRIAPEAL-DTLRVTPEVAQIITPTLAELRAVPLVRERRTL-PDGTEVPLYRYPW----RGLDIWGMTA  182 (194)
T ss_dssp             ETTTEEEEEEEEEECGGGG-GGCCCCTTEEEEECCBHHHHHHSCCEEEEEEC-TTSCEEEEEEEEE----TTEEEEHHHH
T ss_pred             CCCCeEEEEEEEEecCCcc-ccCCCccceeEEEEEEHHHhccCCCcceeEEe-cCCcEEEEEEecc----CCcEEehhHH
Confidence            5556677888887653211 03457789999999999999 88776554332 3455567888888    4689999999


Q ss_pred             hhhhhhceeeee
Q 025031          223 AILVRAASVVYQ  234 (259)
Q Consensus       223 ~il~~~~~~~~~  234 (259)
                      +||.+++.++.|
T Consensus       183 ~il~~~~~~~~~  194 (194)
T 1nqz_A          183 RVLHDLLEQGPG  194 (194)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHhcC
Confidence            999999988764

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.78  E-value=1.5e-19  Score=153.05  Aligned_cols=154  Identities=16%  Similarity=0.185  Sum_probs=97.9

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL--  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~--  143 (259)
                      .+.+|.++++..+++  +|||++|..   .++|.|+||||++|+|| ++.+||+||++|||||.+....+++....+.  
T Consensus        25 ~~v~v~~~v~~~~~~--~vLL~~r~~---~~~g~w~lPGG~ve~gE-s~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~   98 (199)
T 3h95_A           25 HQVGVAGAVFDESTR--KILVVQDRN---KLKNMWKFPGGLSEPEE-DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNP   98 (199)
T ss_dssp             -CCEEEEEEEETTTT--EEEEEEESS---SSTTSBBCCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECC---
T ss_pred             ccceEEEEEEeCCCC--EEEEEEEcC---CCCCCEECCccccCCCC-CHHHHHHHHHHHHhCCccccceEEEEEeeecCC
Confidence            455666666664444  899999865   35799999999999999 9999999999999999988777776432222  


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhH-----HHHhhcccceeeeeeeeeccCceEEee
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRV-----EEKEWMGEKYLLHYFNYEQKNKKYLIW  218 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~-----~~~~~~g~~~~~~~f~~~~~~~~~~IW  218 (259)
                      .........|++.+... ...+.++++|+.++.|+|++++.+......     ...-+.+....+....+    ....+|
T Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~  173 (199)
T 3h95_A           99 GAFGKSDMYIICRLKPY-SFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDL----TVEELP  173 (199)
T ss_dssp             ------CEEEEEEEEES-CCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHHHHHHHCGGGTCE----EEEEEE
T ss_pred             CCceeEEEEEEEEEcCC-CcccCCCccceeeeEEEeHHHHhhhhhcChHHHHHHHHHHhhhhcCCCcccc----cHHHHH
Confidence            11222233444444332 234456789999999999999986432111     11112222211112222    245799


Q ss_pred             ehhHhhhhhhce
Q 025031          219 GITAAILVRAAS  230 (259)
Q Consensus       219 GlTa~il~~~~~  230 (259)
                      ++++.|+.++..
T Consensus       174 ~v~~~i~~~l~~  185 (199)
T 3h95_A          174 AVYTGLFYKLYH  185 (199)
T ss_dssp             CSSSSCEEEEEE
T ss_pred             HHHhhHHHHHHh
Confidence            999998877654

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.78  E-value=4.1e-19  Score=142.92  Aligned_cols=107  Identities=15%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-h
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-K  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~  145 (259)
                      +++|.+++.+  ++  +|||++|.   ..++|.|+||||++|.|| |+.+||+||++||||+.+....+++....... .
T Consensus         5 ~~~v~~ii~~--~~--~vLl~~r~---~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   76 (153)
T 3shd_A            5 HVTVACVVHA--EG--KFLVVEET---INGKALWNQPAGHLEADE-TLVEAAARELWEETGISAQPQHFIRMHQWIAPDK   76 (153)
T ss_dssp             EEEEEEEEEE--TT--EEEEEEEE---ETTEEEEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTS
T ss_pred             ceEEEEEEEe--CC--EEEEEEec---CCCCCCEECCeEEeCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEEecCCC
Confidence            3455554444  34  89999997   246789999999999999 99999999999999999988888877643322 2


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhh
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF  183 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el  183 (259)
                      .....+.|++.+...  ....++.+|+.++.|++++++
T Consensus        77 ~~~~~~~f~~~~~~~--~~~~~~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           77 TPFLRFLFAIELEQI--CPTQPHDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             CCEEEEEEEEECSSC--CCCCCCSTTCCEEEEECHHHH
T ss_pred             ceEEEEEEEEEcccc--CcCCCCcccceeeEEecHHHh
Confidence            223334555655432  223566789999999999999

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.75  E-value=8.2e-19  Score=142.69  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=83.9

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-  144 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-  144 (259)
                      .+.+|.+++++  ++  +|||++|...  .++|.|+||||++|.|| ++.+||+||++|||||.+....+++.+..... 
T Consensus        28 ~~~~v~~vi~~--~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  100 (157)
T 4dyw_A           28 PRVGCGAAIVR--DG--RILLIKRKRA--PEAGCWGLPGGKVDWLE-PVERAVCREIEEELGIALERATLLCVVDHIDAA  100 (157)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEEECSS--SSTTCEECCEEECCTTC-CHHHHHHHHHHHHHSCEEESCEEEEEEEEEETT
T ss_pred             ceeEEEEEEEE--CC--EEEEEEecCC--CCCCEEECCcccCCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEeeccC
Confidence            45666666666  34  8999999965  37899999999999999 99999999999999999988888887665543 


Q ss_pred             -hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 -KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 -~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                       ......+.|++.+....  ....+++|+.++.|++++++.+.
T Consensus       101 ~~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~  141 (157)
T 4dyw_A          101 NGEHWVAPVYLAHAFSGE--PRVVEPDRHEALGWFALDDLPQP  141 (157)
T ss_dssp             TTEEEEEEEEEESEEESC--CCCSCTTTEEEEEEEETTSCCSS
T ss_pred             CCcEEEEEEEEEEEcCCC--cccCCCCcEeEEEEECHHHcccc
Confidence             22233445555443321  11235689999999999999873

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.75  E-value=1.5e-18  Score=140.02  Aligned_cols=113  Identities=23%  Similarity=0.214  Sum_probs=85.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      +.+|.+++++ .++  +|||++|+...+.++|.|+||||++|.|| ++.+||+||++||||+.+....+++.+.......
T Consensus         8 ~~~v~~vi~~-~~~--~vLL~~r~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~   83 (153)
T 3grn_A            8 IISVYALIRN-EKG--EFLLLRRSENSRTNAGKWDLPGGKVNPDE-SLKEGVAREVWEETGITMVPGDIAGQVNFELTEK   83 (153)
T ss_dssp             EEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSC
T ss_pred             EEEEEEEEEc-CCC--cEEEEEEcCCCCCCCCeEECceeecCCCC-CHHHHHHhhhhhhhCcEeecceEEEEEEEecCCc
Confidence            4555555555 345  89999999876688999999999999999 9999999999999999999888888766444433


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ...++.|.+.....   .+.+ .+|+.++.|++++++.+..
T Consensus        84 ~~~~~~~~~~~~~~---~~~~-~~e~~~~~W~~~~el~~~~  120 (153)
T 3grn_A           84 KVIAIVFDGGYVVA---DVKL-SYEHIEYSWVSLEKILGME  120 (153)
T ss_dssp             EEEEEEEEEEECCC---CCCC-CTTEEEEEEECHHHHTTCS
T ss_pred             eEEEEEEEEEecCC---cEec-CCCcceEEEEEHHHhhhcc
Confidence            33444454443321   2233 3789999999999998754

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.75  E-value=1.7e-18  Score=143.28  Aligned_cols=115  Identities=17%  Similarity=0.111  Sum_probs=85.7

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF  142 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~  142 (259)
                      +..+.++.+++++ .+|  +|||++|+.....++|.|+| |||++|.|| ++.+||+||++||||+....+..++.+...
T Consensus        34 ~~~~~~~~v~i~~-~~~--~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~  109 (180)
T 2fkb_A           34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE  109 (180)
T ss_dssp             TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred             CceeeEEEEEEEC-CCC--EEEEEECCCCCccCCCcEEeecCCCCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEEEec
Confidence            3345566666665 345  79999998776677999999 999999999 999999999999999988888777765433


Q ss_pred             HhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          143 LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......++.|++..    ...+.++.+|+.++.|++++++.+.
T Consensus       110 ~~~~~~~~~~f~~~~----~~~~~~~~~E~~~~~W~~~~el~~~  149 (180)
T 2fkb_A          110 DKNCRVWGALFSCVS----HGPFALQEDEVSEVCWLTPEEITAR  149 (180)
T ss_dssp             ETTEEEEEEEEEEEC----CCCCCCCTTTEEEEEEECHHHHHTT
T ss_pred             CCCceEEEEEEEEec----CCCcCCChhHhheEEEecHHHHHHH
Confidence            332333344454442    1234557789999999999999864

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.74  E-value=1.1e-18  Score=140.24  Aligned_cols=113  Identities=20%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      ..+|.|++++ .+|  +|||++|... ...++.|+||||++|+|| |+.+||+||++||||+.+..+..++.+.......
T Consensus         5 ~~~v~vi~~~-~~~--~vLLv~~~r~-~~~~~~w~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~   79 (145)
T 2w4e_A            5 PRAVFILPVT-AQG--EAVLIRQFRY-PLRATITEIVAGGVEKGE-DLGAAAARELLEEVGGAASEWVPLPGFYPQPSIS   79 (145)
T ss_dssp             CEEEEEEEEE-TTS--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTC
T ss_pred             CCEEEEEEEc-CCC--EEEEEEEEec-CCCCCEEEeCCccCCCCC-CHHHHHHHHHHHhhCCccCeEEEEecCcCCCCcc
Confidence            3466666665 345  7888765433 235679999999999999 9999999999999999988887777643322222


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus        80 ~~~~~~f~~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~  117 (145)
T 2w4e_A           80 GVVFYPLLALGVTL--GAAQLEDTETIERVVLPLAEVYRM  117 (145)
T ss_dssp             CCEEEEEEEEEEEE--C--------CEEEEEEEHHHHHHH
T ss_pred             CceEEEEEEEeccc--CCCCCCCCCeEEEEEEeHHHHHHH
Confidence            33455666552221  123457789999999999999764

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.74  E-value=2.3e-18  Score=136.83  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=74.8

Q ss_pred             EEEEeeccccccc-ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeeccc
Q 025031           83 RVILTKRASRLST-HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRK  161 (259)
Q Consensus        83 ~vLL~kRs~~~~~-~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~  161 (259)
                      +|||++|+..... ++|.|+||||++|+|| ++.+||+||++||||+.+.....++.+..........++.|++.+... 
T Consensus        18 ~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-   95 (140)
T 3gwy_A           18 KYLCVQRGQTKFSYTSFRYEFPGGKVEEGE-SLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQ-   95 (140)
T ss_dssp             EEEEEEC---------CCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEEEECCS-
T ss_pred             EEEEEEecCCCCCCCCCeEECCCccCCCCC-CHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEEEEEEEEEecCC-
Confidence            8999999976221 8899999999999999 999999999999999999888888886655555555566666665432 


Q ss_pred             cCCCCCCccchhhhcccchhhhcccc
Q 025031          162 AFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       162 ~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                          .++.+|+.++.|++++++.+..
T Consensus        96 ----~~~~~E~~~~~W~~~~el~~~~  117 (140)
T 3gwy_A           96 ----RYVLKEHIAAQWLSTREMAILD  117 (140)
T ss_dssp             ----CCCCCSSCEEEEECHHHHTTSC
T ss_pred             ----cccccccceeEeccHHHHhhCC
Confidence                2345789999999999997743

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.74  E-value=3e-18  Score=138.31  Aligned_cols=115  Identities=22%  Similarity=0.255  Sum_probs=84.3

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccc--cccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASR--LSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~--~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      .+.+|.+++++ .++  +|||++|...  ...++|.|+||||++|.|| ++.+||+||++||||+.+..+.+++.+...+
T Consensus        12 ~~~~~~~vi~~-~~~--~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~   87 (159)
T 1sjy_A           12 ELRAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRF   87 (159)
T ss_dssp             CEEEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             EEEeEEEEEEe-CCC--CEEEEEecccCcCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHHCccceeeEEEEEEeccc
Confidence            34455555665 345  7999999862  3457899999999999999 9999999999999999998888888765433


Q ss_pred             hh-hcceeeeEeeEeeccccCCCCC-Cccchhhhcccchhhhccc
Q 025031          144 SK-YLLRVVPVIGILHNRKAFKPTP-NPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~-~~~~v~~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~ell~~  186 (259)
                      +. ....++.|++.+....  .+.+ +.+|+.++.|++++++.+.
T Consensus        88 ~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  130 (159)
T 1sjy_A           88 PDGVLILRHVWLAEPEPGQ--TLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             TTSCEEEEEEEEEEECSSC--CCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             CCCceEEEEEEEEEccCCC--ccccCCCCceeEEEEecHHHHHHh
Confidence            32 3344555666554321  1344 6789999999999998763

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.74  E-value=3.8e-18  Score=139.28  Aligned_cols=113  Identities=21%  Similarity=0.227  Sum_probs=82.6

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      .+.+|.+++++++++  +|||++|+.  ..|.|.|+||||++|+|| ++.+||+||++|||||.+....+++.+......
T Consensus         9 ~~~~v~~vi~~~~~~--~vLL~~r~~--~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   83 (161)
T 3exq_A            9 VELVTMVMVTDPETQ--RVLVEDKVN--VPWKAGHSFPGGHVEVGE-PCATAAIREVFEETGLRLSGVTFCGTCEWFDDD   83 (161)
T ss_dssp             EEEEEEEEEBCTTTC--CEEEECCCC--CTTTCSBBCCCCBCCTTS-CHHHHHHHHHHHHHCCEESCCEEEEEEEEECSS
T ss_pred             ceEEEEEEEEeCCCC--EEEEEEccC--CCCCCCEEccceecCCCC-CHHHHHHHHHHHhhCcEecCCcEEEEEecccCC
Confidence            445666666654324  899999984  478889999999999999 999999999999999999888888877654422


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .+.....+++..... ..  .+...|+.++.|++++++.+.
T Consensus        84 ~~~~~~~~~~~~~~~-~~--~~~~~e~~~~~W~~~~el~~~  121 (161)
T 3exq_A           84 RQHRKLGLLYRASNF-TG--TLKASAEGQLSWLPITALTRE  121 (161)
T ss_dssp             CSSEEEEEEEEECCE-ES--CCCGGGTTTEEEECGGGCCTT
T ss_pred             CCeEEEEEEEEEecc-CC--ccCCCccceEEEeeHHHhhhC
Confidence            333333333333221 11  245678899999999999774

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.73  E-value=2.7e-18  Score=137.39  Aligned_cols=109  Identities=17%  Similarity=0.275  Sum_probs=83.1

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL  148 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~  148 (259)
                      .|.++++.. +|  +|||++|... +.++|.|+||||++|.|| ++.+||+||+.||||+.+....+++...+.++....
T Consensus        23 ~~~~~i~~~-~~--~vLl~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   97 (153)
T 3ees_A           23 PVVAGFLRK-DG--KILVGQRPEN-NSLAGQWEFPGGKIENGE-TPEEALARELNEELGIEAEVGELKLACTHSYGDVGI   97 (153)
T ss_dssp             EEEEEEEEE-TT--EEEEEECCTT-STTTTCEECSEEECCTTC-CHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEE
T ss_pred             EEEEEEEEE-CC--EEEEEEeCCC-CCCCCeEECCceeeCCCC-CHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeE
Confidence            333334442 35  8999999876 578999999999999999 999999999999999998888888776555554444


Q ss_pred             eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      .++.|.+.+...     .++.+|+.++.|++++++.+..
T Consensus        98 ~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  131 (153)
T 3ees_A           98 LILFYEILYWKG-----EPRAKHHMMLEWIHPEELKHRN  131 (153)
T ss_dssp             EEEEEEECEEES-----CCCCSSSSEEEEECGGGGGGSC
T ss_pred             EEEEEEEEECCC-----CcCCCccceEEEecHHHhhhCC
Confidence            555555554332     2456789999999999997643

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.73  E-value=1.4e-18  Score=138.34  Aligned_cols=93  Identities=28%  Similarity=0.291  Sum_probs=70.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc----ceeeeEeeEee
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL----LRVVPVIGILH  158 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~----~~v~~~v~~~~  158 (259)
                      +|||++|..      |.|+||||++|+|| |+.+||+||++|||||.+.....++.....+...+    ..++.|++...
T Consensus        16 ~vLL~~r~~------g~W~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~   88 (134)
T 3i7u_A           16 EVLLIKTPS------NVWSFPKGNIEPGE-KPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKYYLMKYK   88 (134)
T ss_dssp             EEEEEECTT------SCEECCEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             EEEEEEeCC------CcEECCeeEecCCC-CHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEEEEEEEEc
Confidence            899998753      78999999999999 99999999999999999988888877654432222    22344555443


Q ss_pred             ccccCCCCCCccchhhhcccchhhhccc
Q 025031          159 NRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       159 ~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .   ..+.++ +|+.++.|++++++.+.
T Consensus        89 ~---~~~~~~-~E~~~~~W~~~~e~~~~  112 (134)
T 3i7u_A           89 E---GEPRPS-WEVKDAKFFPIKEAKKL  112 (134)
T ss_dssp             E---ECCCCC-TTSSEEEEEEHHHHHHH
T ss_pred             C---CcCcCC-hhheEEEEEEHHHHhhh
Confidence            3   234444 79999999999998764

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.73  E-value=2.3e-18  Score=142.97  Aligned_cols=116  Identities=23%  Similarity=0.318  Sum_probs=86.2

Q ss_pred             ccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031           65 PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS  144 (259)
Q Consensus        65 ~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~  144 (259)
                      .+..+|.+++++ .+|  +|||++|... ..++|.|+||||++|+|| ++.+||+||++||||+.+..+..++.+.....
T Consensus        39 ~~~~~v~v~i~~-~~~--~vLL~~r~~~-~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~  113 (182)
T 2yvp_A           39 GPVAASFVLPVT-ERG--TALLVRQYRH-PTGKFLLEVPAGKVDEGE-TPEAAARRELREEVGAEAETLIPLPSFHPQPS  113 (182)
T ss_dssp             SSCEEEEEEEBC-TTS--EEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCEECSCEEECCCBCSCTT
T ss_pred             ecCCEEEEEEEc-CCC--EEEEEEeccC-CCCCcEEEeccccCCCCc-CHHHHHHHHHHHHhCCCcccEEEEEEEeCCCC
Confidence            344566666665 345  8999998765 457899999999999999 99999999999999999988888877644333


Q ss_pred             hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .....++.|++..... ...+..+.+|+.++.|++++++.+.
T Consensus       114 ~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~  154 (182)
T 2yvp_A          114 FTAVVFHPFLALKARV-VTPPTLEEGELLESLELPLTEVYAL  154 (182)
T ss_dssp             TBCCEEEEEEECSCEE-CSCCCCCTTCCEEEEEEEHHHHHHH
T ss_pred             ccccEEEEEEEecccc-CCCCCCCCCceEEEEEEEHHHHHHH
Confidence            3334455565543221 1223457789999999999999764

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.73  E-value=3.5e-18  Score=138.08  Aligned_cols=109  Identities=22%  Similarity=0.196  Sum_probs=80.2

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL  148 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~  148 (259)
                      +|.+++++ .++  +|||++|...  .++|.|+||||++|.|| ++.+||+||++||||+.+....+++.+...   ...
T Consensus        22 ~v~~~i~~-~~~--~vLl~~r~~~--~~~~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~   92 (156)
T 3gg6_A           22 VVLAVFLS-EQD--EVLLIQEAKR--ECRGSWYLPAGRMEPGE-TIVEALQREVKEEAGLHCEPETLLSVEERG---PSW   92 (156)
T ss_dssp             EEEEECBC-TTS--EEEEEECCCT--TSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTE
T ss_pred             EEEEEEEe-CCC--EEEEEEecCC--CCCCEEECCeeeccCCC-CHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCE
Confidence            33344444 345  8999999864  47899999999999999 999999999999999999888888876532   233


Q ss_pred             eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..+.|++.+..........+.+|+.++.|++++++.+.
T Consensus        93 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  130 (156)
T 3gg6_A           93 VRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP  130 (156)
T ss_dssp             EEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSS
T ss_pred             EEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCccc
Confidence            44556665543211111234579999999999999764

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.73  E-value=7.9e-18  Score=137.33  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeeh------hh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI------EP  141 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l------~~  141 (259)
                      .++.++++.. ++  +|||++|+...+.++|.|+||||++|+|| ++.+||+||++|||||.+....+++..      ..
T Consensus        28 ~~~~~~ii~~-~~--~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  103 (165)
T 3oga_A           28 RTIVCPLIQN-DG--CYLLCKMADNRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLILSDITPWTFRDDIRIK  103 (165)
T ss_dssp             EEEEEEEEEE-TT--EEEEEEECC------CCEECCCEECCTTC-CHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEeC-CC--EEEEEEecCCCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeeeeeecceeeE
Confidence            3444444443 45  89999999876788999999999999999 999999999999999998776655421      01


Q ss_pred             hHhhhc---ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          142 FLSKYL---LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       142 ~~~~~~---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .+....   ..+..+++..... ...+.. .+|+.++.|++++++.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          104 TYADGRQEEIYMIYLIFDCVSA-NRDICI-NDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             EC--CCEEEEEEEEEEEEEEES-CCCCCC-CTTEEEEEEECGGGGGGS
T ss_pred             ecCCCCceeEEEEEEEEEeecc-CCCccC-CchheeeEEccHHHHhhC
Confidence            111111   1111222222211 122233 378999999999999864

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.72  E-value=3.8e-18  Score=132.70  Aligned_cols=97  Identities=21%  Similarity=0.263  Sum_probs=76.9

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|+.. +.++|.|+||||++|+|| ++.+||+||++||||+.......++...+.++.....++.|.+.....  
T Consensus        17 ~vLl~~r~~~-~~~~g~w~~PgG~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   92 (129)
T 1mut_A           17 EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWEG--   92 (129)
T ss_dssp             EEEEEECSSC-CSSSCCEECCCCCSSSCS-STTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEEEECSS--
T ss_pred             EEEEEEeCCC-CCCCCeEECCccCcCCCC-CHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEEEccCC--
Confidence            8999999876 478999999999999999 999999999999999999887777776554444444455566554321  


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         .++.+|+.++.|++++++.+.
T Consensus        93 ---~~~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           93 ---EPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             ---CCCCCSSCCCEEEESSSCCTT
T ss_pred             ---ccCCcccceeEEeCHHHcccc
Confidence               234578899999999998763

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.72  E-value=5e-18  Score=137.29  Aligned_cols=126  Identities=17%  Similarity=0.101  Sum_probs=88.8

Q ss_pred             eeeeccccccccccccccccCccceeEEEEEeecC-CCceEEEEeecccccccccceeecCCCCCCCCCCCch-hhhhHH
Q 025031           44 TSLVGSQESASPTVRYAKTFRPKKAAVLVCLFEGD-NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDG-ETATRE  121 (259)
Q Consensus        44 ~~~~g~~~~~~p~~~~~~~~~~r~aaVli~l~~~~-~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~-~aA~RE  121 (259)
                      +.++++.+++++.       ..+..+++|++.++. ++  +|||++|... +.++|.|+||||++|.|| ++. +||+||
T Consensus         4 ~~~~Pvk~~k~~~-------~~~~~~~~vi~~~~~~~~--~vLl~~R~~~-~~~~g~w~~PgG~~e~gE-~~~~~a~~RE   72 (155)
T 1x51_A            4 GSSGPRKASRKPP-------REESSATCVLEQPGALGA--QILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQE   72 (155)
T ss_dssp             SCSCTTSSSCSCT-------TEEEEEEEEEEEECSSSE--EEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHH
T ss_pred             hhhCCCcCCCCCC-------CeEEEEEEEEEecCCCCC--EEEEEECCCC-CCCCceecCCccccCCCC-CHHHHHHHHH
Confidence            4556666655542       334555555444311 23  8999999875 578999999999999999 996 999999


Q ss_pred             HHHhhC-CCCcceeeeeehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          122 AKEEIG-LDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       122 l~EE~G-L~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      +.|||| +.+.....++.+.+.++.....++.|.+.+...   .  +...|..++.|++++++.+
T Consensus        73 l~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~e~~~~~W~~~~el~~  132 (155)
T 1x51_A           73 LQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ---T--PVTTVPPGARWLTQEEFHT  132 (155)
T ss_dssp             HHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC---C--CCCCCCTTEEEEEHHHHHH
T ss_pred             HHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC---C--CCCCCCCccEEccHHHhhh
Confidence            999999 888777777766555554444555666554321   1  2345778899999999875

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.72  E-value=5.7e-18  Score=133.57  Aligned_cols=110  Identities=18%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee----ehhhhHh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT----VIEPFLS  144 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~----~l~~~~~  144 (259)
                      +|.++++++++++.+|||++|+.    .+|.|+||||++|+|| ++.+||+||++||||+.+..+.+++    ...+...
T Consensus         5 ~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   79 (138)
T 1ktg_A            5 AAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK   79 (138)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred             EEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCC-CHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence            44444454334445899999873    3589999999999999 9999999999999999877766553    2222222


Q ss_pred             hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .....++.|++.+...   ....+++|+.++.|++++++.+.
T Consensus        80 ~~~~~~~~f~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~  118 (138)
T 1ktg_A           80 GKPKSVKYWLAKLNNP---DDVQLSHEHQNWKWCELEDAIKI  118 (138)
T ss_dssp             TEEEEEEEEEEEECSC---CCCCCCTTEEEEEEECHHHHHHH
T ss_pred             CCceEEEEEEEEecCC---cccCCCchhcEeEeccHHHHHHh
Confidence            2334455666665542   22346689999999999999764

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.71  E-value=1.3e-17  Score=135.41  Aligned_cols=109  Identities=20%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL--  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~--  143 (259)
                      ++.+|.+++++  ++  +|||++|..     +|.|+||||++|+|| |+.+||+||++|||||.+..+..++.+....  
T Consensus         5 ~~~~v~~vi~~--~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   74 (159)
T 3f6a_A            5 RHFTVSVFIVC--KD--KVLLHLHKK-----AKKMLPLGGHIEVNE-LPEEACIREAKEEAGLNVTLYNPIDINLKKSCD   74 (159)
T ss_dssp             SCEEEEEEEEE--TT--EEEEEECSS-----SCCEECEEEECCTTC-CHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHH
T ss_pred             ceEEEEEEEEE--CC--EEEEEEcCC-----CCeEECCccCccCCC-CHHHHHHHHHHHHhCCCceeccccccccccccc
Confidence            55666666666  34  899999875     489999999999999 9999999999999999998887776543221  


Q ss_pred             hhh------------------c-ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          144 SKY------------------L-LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       144 ~~~------------------~-~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ...                  . .....|++....   ..+.++.+|+.++.|++++++.+..
T Consensus        75 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           75 LSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTS---FETSPEIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             HTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSC---SCCCCCTTSCCCEEEECSSSSTTCS
T ss_pred             ccccccccCccccccccCCCCceEEEEEEEEEeCC---CCcCCCCCcccceEEeeHHHHhhCc
Confidence            000                  0 111234444332   2344567899999999999998754

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.71  E-value=1.1e-17  Score=138.94  Aligned_cols=146  Identities=19%  Similarity=0.120  Sum_probs=93.8

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      +++++++++..  ++  +|||++|...  .++|.|+||||++|+|| ++.+||+||++|||||.+..+..++.+......
T Consensus        24 ~~~~~~~vi~~--~~--~vLL~~r~~~--~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~   96 (176)
T 3q93_A           24 SRLYTLVLVLQ--PQ--RVLLGMKKRG--FGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFVG   96 (176)
T ss_dssp             EEEEEEEEEEC--SS--EEEEEEECSS--TTTTSEECEEEECCTTS-CHHHHHHHHHHHHHSCEESCCEEEEEEEEEETT
T ss_pred             CcEEEEEEEEe--CC--EEEEEEEcCC--CCCCeEECceecCCCCC-CHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCC
Confidence            44455444433  34  8999998654  57899999999999999 999999999999999999888888887544333


Q ss_pred             hcc--eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHH----HHhhcccceeeeeeeeeccCceEEeee
Q 025031          146 YLL--RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVE----EKEWMGEKYLLHYFNYEQKNKKYLIWG  219 (259)
Q Consensus       146 ~~~--~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~----~~~~~g~~~~~~~f~~~~~~~~~~IWG  219 (259)
                      ...  .++.|++....   ..  +.+.|..++.|++++++.+.......    ..-..+..+ ...|.|.   ++..||+
T Consensus        97 ~~~~~~~~~f~~~~~~---~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---~~~~~~~  167 (176)
T 3q93_A           97 EPELMDVHVFCTDSIQ---GT--PVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKF-HGYFKFQ---GQDTILD  167 (176)
T ss_dssp             CSCEEEEEEEEESCEE---SC--CCCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHTTCCE-EEEEEEE---TTTEEEE
T ss_pred             CCcEEEEEEEEEECCC---CC--cCCCcceeeEEeeHHHccccccCcchHHHHHHHHcCCcE-EEEEEEc---CCCchhh
Confidence            222  23444443222   12  23456777899999999864322211    111223322 2334454   2347888


Q ss_pred             hhHhhhhh
Q 025031          220 ITAAILVR  227 (259)
Q Consensus       220 lTa~il~~  227 (259)
                      .+.+.|..
T Consensus       168 ~~~~~~~~  175 (176)
T 3q93_A          168 YTLREVDT  175 (176)
T ss_dssp             EEEEECSC
T ss_pred             hhhhhhcc
Confidence            87766543

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.70  E-value=7.6e-18  Score=141.09  Aligned_cols=113  Identities=16%  Similarity=0.131  Sum_probs=83.9

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcce-eeeeehhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLV-DVVTVIEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i-~~l~~l~~~~  143 (259)
                      .+.+|.+++++ .+|  +|||++|+.....++|.|+| |||++|+|| |+.+||+||++||||+.+..+ .+++.+....
T Consensus        31 ~~~~v~~~i~~-~~g--~vLl~~R~~~~~~~~g~w~~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~  106 (190)
T 1hzt_A           31 LHLAFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRYRA  106 (190)
T ss_dssp             CEECEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEEEE
T ss_pred             eEEEEEEEEEc-CCC--EEEEEEeCCCCCCCCCcccCcccccCCCCC-CHHHHHHHHHHHHHCCCchhhheeeeeEEEEe
Confidence            34466666665 345  89999998776678999999 999999999 999999999999999999887 6666654321


Q ss_pred             --h-h--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 --S-K--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 --~-~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                        . .  ....++.|++.+..    .+.++++|+.++.|++++++.+.
T Consensus       107 ~~~~~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~  150 (190)
T 1hzt_A          107 TDPSGIVENEVCPVFAARTTS----ALQINDDEVMDYQWCDLADVLHG  150 (190)
T ss_dssp             ECTTSCEEEEECCEEEEEBCS----CCCCCTTTEEEEEEECHHHHHHH
T ss_pred             eCCCCCcceEEEEEEEEecCC----CCcCCccceeeEEEecHHHHHHH
Confidence              1 1  12223445554332    34557789999999999999764

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.70  E-value=1e-17  Score=135.35  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC--cceeeeeehhhhHhh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP--SLVDVVTVIEPFLSK  145 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~--~~i~~l~~l~~~~~~  145 (259)
                      .+|.+++++ .++  +|||++|+..  .++|.|+||||++|+|| ++.+||+||++||||+.+  ..+..++.+.+.+..
T Consensus        19 ~~v~~vi~~-~~~--~vLl~~r~~~--~~~g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   92 (160)
T 1rya_A           19 VSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD   92 (160)
T ss_dssp             EEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESS
T ss_pred             EEEEEEEEc-CCC--EEEEEeccCC--CCCCEEECCccccCCCC-CHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcc
Confidence            455555665 345  8999999874  46899999999999999 999999999999999985  356677766543322


Q ss_pred             h--------cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          146 Y--------LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       146 ~--------~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      .        ...++.|.+.+..   ..+..+.+|+.++.|++++++.+..
T Consensus        93 ~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~e~~~~~W~~~~el~~~~  139 (160)
T 1rya_A           93 NFSGTDFTTHYVVLGFRFRVSE---EELLLPDEQHDDYRWLTSDALLASD  139 (160)
T ss_dssp             BTTBSSSCEEEEEEEEEEECCG---GGCCCCSSSEEEEEEECHHHHHHCT
T ss_pred             cccCCCcCcEEEEEEEEEEcCc---cccccCCCccceEEEecHHHHhhcc
Confidence            1        2334445454432   2334567899999999999998643

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.70  E-value=1.2e-17  Score=141.60  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=85.5

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      +..||.|+++++  +  +|||++|... ..++|.|+||||++|+|| ++++||+||++||||+.+..+..++.+......
T Consensus        48 ~~~av~vl~~~~--~--~vLLvrq~r~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  121 (198)
T 1vhz_A           48 NREAVMIVPIVD--D--HLILIREYAV-GTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSY  121 (198)
T ss_dssp             CCCEEEEEEEET--T--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTT
T ss_pred             CCCEEEEEEEEC--C--EEEEEEcccC-CCCCcEEEeCcccCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCc
Confidence            345666666653  2  8999987654 456889999999999999 999999999999999999888888876543333


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ....++.|++......  ....+++|+.++.|+|++++.+.
T Consensus       122 ~~~~~~~f~a~~~~~~--~~~~~~~E~~~~~w~~~~el~~~  160 (198)
T 1vhz_A          122 FSSKMNIVVAQDLYPE--SLEGDEPEPLPQVRWPLAHMMDL  160 (198)
T ss_dssp             CCCEEEEEEEEEEEEC--CCCCCCSSCCCEEEEEGGGGGGG
T ss_pred             cCcEEEEEEEEeCCcc--cCCCCCCceEEEEEEEHHHHHHH
Confidence            3445666766644321  23456789999999999999864

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.70  E-value=1.1e-17  Score=137.57  Aligned_cols=111  Identities=22%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      +.+|.+++++  +|  +|||++|... ..++|.|+||||++|+|| |+.+||+||++||||+ +..+..++.+.......
T Consensus        34 ~~~v~vii~~--~~--~vLL~~~~r~-~~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~  106 (170)
T 1v8y_A           34 KPAVAVIALR--EG--RMLFVRQMRP-AVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFT  106 (170)
T ss_dssp             CCEEEEEEEE--TT--EEEEEECCBT-TTTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTB
T ss_pred             CCeEEEEEEE--CC--EEEEEEEEeC-CCCCCEEECCccccCCCC-CHHHHHHHHHHHHHCC-CcCceeeEEEecCCCcc
Confidence            3466666666  45  8999988755 257899999999999999 9999999999999999 88888887754333333


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus       107 ~~~~~~f~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  144 (170)
T 1v8y_A          107 DEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALER  144 (170)
T ss_dssp             CCEEEEEEEEEEEE--CC--------CEEEEECHHHHHHH
T ss_pred             ccEEEEEEEEeccc--cCCCCCCCceEEEEEEEHHHHHHH
Confidence            34455666654332  223456789999999999998763

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.70  E-value=1.6e-17  Score=134.63  Aligned_cols=108  Identities=21%  Similarity=0.267  Sum_probs=78.0

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceee--eeehhhhHhhh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDV--VTVIEPFLSKY  146 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~--l~~l~~~~~~~  146 (259)
                      ++.+++++ .++  +|||++|... +.++|.|+||||++|+|| ++.+||+||+.||||+.+....+  ++...+..+..
T Consensus        31 ~~~~~i~~-~~~--~vLL~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~  105 (158)
T 3hhj_A           31 VVACALLD-QDN--RVLLTQRPEG-KSLAGLWEFPGGKVEQGE-TPEASLIRELEEELGVHVQADNLFPLTFASHGYETF  105 (158)
T ss_dssp             EEEEEEBC-TTS--EEEEEECCCT-TSCCCCCBCCEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSC
T ss_pred             EEEEEEEe-CCC--EEEEEEeCCC-CCCCCEEECCceeecCCC-CHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCc
Confidence            33334444 345  8999999866 568999999999999999 99999999999999998877654  44433333333


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...++.|++.+...     .++..|+.++.|++++++.+.
T Consensus       106 ~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~  140 (158)
T 3hhj_A          106 HLLMPLYFCSHYKG-----VAQGREGQNLKWIFINDLDKY  140 (158)
T ss_dssp             EEEEEEEEESCCBS-----CCCCTTSCEEEEEEGGGGGGS
T ss_pred             EEEEEEEEEEECCC-----ccCCccccceEEEcHHHHhhC
Confidence            44444454443321     345678999999999999763

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.70  E-value=2e-17  Score=131.41  Aligned_cols=109  Identities=20%  Similarity=0.256  Sum_probs=77.7

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeee--eehhhhHhhh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVV--TVIEPFLSKY  146 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l--~~l~~~~~~~  146 (259)
                      ++.+++++ .+|  +|||++|... +.++|.|+||||++|.|| ++.+||+||++||||+.+....+.  +...+..+..
T Consensus        10 ~~~~vi~~-~~~--~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   84 (144)
T 3r03_A           10 VTAAALID-PDG--RVLLAQRPPG-KSLAGLWEFPGGKLEPGE-TPEAALVRELAEELGVDTRASCLAPLAFASHSYDTF   84 (144)
T ss_dssp             EEEEEEBC-TTS--CEEEEECCTT-SSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSS
T ss_pred             EEEEEEEc-CCC--EEEEEEeCCC-CCCCCcEECCCcEecCCC-CHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCe
Confidence            33334444 345  7999999876 468999999999999999 999999999999999988776433  3233333333


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ...++.|.+.+...     .++.+|+.++.|++++++.+..
T Consensus        85 ~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  120 (144)
T 3r03_A           85 HLLMPLYACRSWRG-----RATAREGQTLAWVRAERLREYP  120 (144)
T ss_dssp             EEEEEEEEECCCBS-----CCCCCSSCEEEEECGGGGGGSC
T ss_pred             EEEEEEEEEEecCC-----ccCCCCcceEEEEeHHHhccCC
Confidence            34445555543321     2446788999999999997643

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.70  E-value=2.2e-17  Score=135.50  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceee-cCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhH
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVS-LPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFL  143 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~ws-fPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~  143 (259)
                      +.+|.+++++ .+|  +|||++|+.....++|.|+ ||||++|+|| ++.+||+||++||||+.+...  ..++.+..+.
T Consensus        34 ~~~v~v~i~~-~~~--~vLl~~r~~~~~~~~g~w~~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~  109 (171)
T 1q27_A           34 VRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFSPFQ  109 (171)
T ss_dssp             CEEEEEEEEE-TTT--EEEECCSCCSSSCCCCSCCCSEEEECSSSS-CHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSS
T ss_pred             ceEEEEEEEC-CCC--eEEEEEecCCCCCCCCccccccCccccCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeccC
Confidence            4566666665 345  8999999877667899998 9999999999 999999999999999988773  4455543111


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      ......++.|++...    ..+.++++|+.++.|++++++.+
T Consensus       110 ~~~~~~~~~f~~~~~----~~~~~~~~E~~~~~W~~~~el~~  147 (171)
T 1q27_A          110 TTLSSFMCVYELRSD----ATPIFNPNDISGGEWLTPEHLLA  147 (171)
T ss_dssp             SCCSSEEEEEEEECC----CCCCSCTTTCSCCEEECHHHHHH
T ss_pred             CCCccEEEEEEEEEC----CccccCchhhheEEEecHHHHHH
Confidence            111124445555441    23355678999999999999974

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.70  E-value=1.2e-17  Score=131.78  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=75.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|+.. +.++|.|+||||++|.|| ++.+||+||+.||||+.+.....++...+..+.....++.|.+.+...  
T Consensus        21 ~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   96 (140)
T 2rrk_A           21 KILLAQRPAQ-SDQAGLWEFAGGKVEPDE-SQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHG--   96 (140)
T ss_dssp             EEEEEECCSS-CSCCCCEECCEEECCTTS-CHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEEEESEEEE--
T ss_pred             EEEEEEcCCC-CCCCCEEECCceecCCCC-CHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEEEEEeeCC--
Confidence            8999999866 467899999999999999 999999999999999998877777776544444444455555544321  


Q ss_pred             CCCCCCccchhhhcccchhhhccc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                         .++.+|+.++.|++++++.+.
T Consensus        97 ---~~~~~e~~~~~W~~~~el~~~  117 (140)
T 2rrk_A           97 ---TLQAHEHQALVWCSPEEALQY  117 (140)
T ss_dssp             ---CCCCSSCSCEEEECHHHHTTS
T ss_pred             ---CcCCCccceeEEeCHHHHhhC
Confidence               134568889999999998764

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.69  E-value=3.1e-17  Score=140.17  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=81.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      +++++++..+.++..+|||+++... ...++.|+||||++|+|| ++++||+||++||||+.+..+.+++.+........
T Consensus        63 av~v~~v~~~~~~~~~vlLv~q~R~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~  140 (212)
T 2dsc_A           63 GVAVIPVLQRTLHYECIVLVKQFRP-PMGGYCIEFPAGLIDDGE-TPEAAALRELEEETGYKGDIAECSPAVCMDPGLSN  140 (212)
T ss_dssp             EEEEEEEEECTTSCCEEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBC
T ss_pred             EEEEEEEEeCCCCCcEEEEEEeecC-CCCCcEEECCccccCCCC-CHHHHHHHHHHHHhCCCccceEEeccEEcCCCccC
Confidence            4444455543322337888876443 235679999999999999 99999999999999999887777665432222233


Q ss_pred             ceeeeEeeEeecccc----CCCCCCccchhhhcccchhhhccc
Q 025031          148 LRVVPVIGILHNRKA----FKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~----~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..++.|++.+.....    ....++++|+.++.|+|++++.+.
T Consensus       141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  183 (212)
T 2dsc_A          141 CTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR  183 (212)
T ss_dssp             CEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred             ceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            446667666543211    133567789999999999999764

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.69  E-value=1.7e-17  Score=128.80  Aligned_cols=104  Identities=18%  Similarity=0.068  Sum_probs=77.3

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL  148 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~  148 (259)
                      +|.+++++ .++  +|||++|+.      |.|+||||++|.|| ++.+||+||++||||+.+.....++.+.+.......
T Consensus         4 ~~~~vi~~-~~~--~vLl~~r~~------g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   73 (126)
T 1vcd_A            4 GAGGVVFN-AKR--EVLLLRDRM------GFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVE   73 (126)
T ss_dssp             EEEEEEEC-TTS--CEEEEECTT------SCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCE
T ss_pred             EEEEEEEc-CCC--EEEEEEECC------CCccCCcCcCCCCC-CHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceE
Confidence            44455555 345  899999874      78999999999999 999999999999999999888888776543333333


Q ss_pred             eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          149 RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       149 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .++.|++.....   . ..+.+|+.++.|++++++.+.
T Consensus        74 ~~~~~~~~~~~~---~-~~~~~e~~~~~w~~~~el~~~  107 (126)
T 1vcd_A           74 REVHWFLMRGEG---A-PRLEEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEEEEEEES---C-CCCCTTCCEEEEECHHHHHHH
T ss_pred             EEEEEEEEEcCC---C-CCCCcceeeeEEcCHHHHHHh
Confidence            455565554432   1 234578999999999998763

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.69  E-value=1.8e-17  Score=139.63  Aligned_cols=116  Identities=15%  Similarity=0.124  Sum_probs=82.1

Q ss_pred             cceeEEEEEeecCCCceEEEEeeccccc----cc-ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRL----ST-HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE  140 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~----~~-~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~  140 (259)
                      +..+|.|++++.+++  +|||+++....    +. +++.|+||||++| || ++.+||+||++||||+.+..+..++.+.
T Consensus        44 ~~~av~v~~~~~~~~--~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE-~~~~aa~REl~EEtG~~~~~~~~l~~~~  119 (191)
T 3o6z_A           44 RGNGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELY  119 (191)
T ss_dssp             CCCEEEEEEEETTTT--EEEEEEEECHHHHTTTCTTCEEEECEEEECC-SS-CHHHHHHHHHHHHC-CCCSCEEEEEEEE
T ss_pred             cCCEEEEEEEECCCC--EEEEEEcCCccccccCCCCCeEEEecceEeC-CC-CHHHHHHHHHHHHhCCccCcEEEEEEEE
Confidence            445666666654345  88888765431    11 6789999999999 99 9999999999999999998888888765


Q ss_pred             hhHhhhcceeeeEeeEeeccccCC--CCCCccchhhhcccchhhhccc
Q 025031          141 PFLSKYLLRVVPVIGILHNRKAFK--PTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       141 ~~~~~~~~~v~~~v~~~~~~~~~~--~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .........++.|++.........  ..+ ++|+.++.|+|++++.+.
T Consensus       120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~  166 (191)
T 3o6z_A          120 MSPGGVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEM  166 (191)
T ss_dssp             SCTTTBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHH
T ss_pred             eCCCccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHH
Confidence            444444556777877765321110  122 689999999999999764

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.69  E-value=8.1e-18  Score=140.69  Aligned_cols=103  Identities=19%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             ceEEEEeeccc-----ccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-hc-ceeeeE
Q 025031           81 ELRVILTKRAS-----RLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-YL-LRVVPV  153 (259)
Q Consensus        81 ~~~vLL~kRs~-----~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-~~-~~v~~~  153 (259)
                      +.+|||++|+.     ....++|.|+||||++|+|| ++.+||+||++|||||.+..+..++.+...... .+ .....|
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~  123 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENE-SAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAF  123 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEE
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCCCCEEEEEE
Confidence            45999999975     33478899999999999999 999999999999999999888888876543221 11 222334


Q ss_pred             eeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          154 IGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       154 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      ++.+..... ....+.+|+.++.|++++++.+
T Consensus       124 ~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~  154 (187)
T 3i9x_A          124 YAIVPPEAL-EKRAAGDDAAEIGLFPMTEALE  154 (187)
T ss_dssp             EEECCHHHH-HHHHHSTTTTTEEEEEHHHHTT
T ss_pred             EEEEcCccc-CCcCCCCceeEEEEEeHHHccc
Confidence            444332111 1112457899999999999975

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.69  E-value=1.6e-17  Score=133.29  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=79.3

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-  145 (259)
                      +++|.+++..  ++  +|||++|.... . +|.|+||||++|+|| ++.+||+||++||||+.+....+++........ 
T Consensus         8 ~~~v~~ii~~--~~--~vLl~~r~~~~-~-~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (153)
T 2b0v_A            8 NVTVAAVIEQ--DD--KYLLVEEIPRG-T-AIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASN   80 (153)
T ss_dssp             EEEEEEECEE--TT--EEEEEEECSSS-S-CCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             CEEEEEEEee--CC--EEEEEEEcCCC-C-CCeEECCCcCcCCCC-CHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCC
Confidence            3444444443  34  89999998752 3 789999999999999 999999999999999998888887776432221 


Q ss_pred             -hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 -YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                       ....++.|++.+....  ....+.+|+.++.|++++++.+.
T Consensus        81 ~~~~~~~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           81 GTTYLRFTFSGQVVSFD--PDRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             TEEEEEEEEEEEEEEEC--TTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             CcEEEEEEEEEEeCCCC--CCCCCCCCeeeEEEecHHHHhhh
Confidence             1223344555544321  11345678999999999999873

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.69  E-value=4.1e-17  Score=132.20  Aligned_cols=101  Identities=21%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH----hhhcceeeeEe
Q 025031           79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL----SKYLLRVVPVI  154 (259)
Q Consensus        79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~----~~~~~~v~~~v  154 (259)
                      ++..++||++|+..    +|.|+||||++|+|| |+.+||+||++||||+.......++.+....    ......+..|+
T Consensus        21 n~~~e~LL~~r~~~----~~~W~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (155)
T 3u53_A           21 NNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL   95 (155)
T ss_dssp             SCSEEEEEEEESSS----SCCEECSEEECCSSC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEecCC----CCCEECCeeeccCCC-CHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEE
Confidence            45679999999864    478999999999999 9999999999999999998877766543221    11122334444


Q ss_pred             eEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          155 GILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       155 ~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      +.+... ...+.+ .+|+.++.|++++++.+.
T Consensus        96 ~~~~~~-~~~~~~-~~E~~~~~W~~~~ea~~~  125 (155)
T 3u53_A           96 AEVKDY-DVEIRL-SHEHQAYRWLGLEEACQL  125 (155)
T ss_dssp             EEESCT-TCCCCC-CTTEEEEEEECHHHHHHH
T ss_pred             EEEecc-CCccCC-CcceeEEEEeEHHHHHHH
Confidence            544432 222333 369999999999998653

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.69  E-value=3.1e-17  Score=132.16  Aligned_cols=111  Identities=18%  Similarity=0.099  Sum_probs=76.0

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-h
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-K  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~  145 (259)
                      +.+|.+++++++.+.+.|||++|+..  .++| |+||||++|+|| ++.+||+||+.||||+.+....+++....... .
T Consensus         8 ~~~~~~ii~~~~~~~~~vLl~~r~~~--~~~g-w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   83 (155)
T 2b06_A            8 ILTNICLIEDLETQRVVMQYRAPENN--RWSG-YAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG   83 (155)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEC-------CCE-EECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred             EEEEEEEEEECCCCeEEEEEEECCCC--CCCC-EeccceecCCCC-CHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence            34555555554434456999999876  3788 999999999999 99999999999999999888887776554332 1


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ....++.|.+....   .  .+...|+.++.|++++++.+.
T Consensus        84 ~~~~~~~~~~~~~~---~--~~~~~e~~~~~W~~~~el~~~  119 (155)
T 2b06_A           84 GRYIVICYKATEFS---G--TLQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             CEEEEEEEEECEEE---E--CCCCBTTBEEEEEEGGGGGGS
T ss_pred             ceEEEEEEEEEecC---C--CCCCCcceeeEEeeHHHhhhC
Confidence            22334444443322   1  233478899999999999874

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.68  E-value=4.3e-17  Score=133.67  Aligned_cols=112  Identities=21%  Similarity=0.258  Sum_probs=76.5

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      .+.+|.+++++  +|  +|||++|...    +|.|+||||++|+|| ++.+||+||++|||||.+....+++........
T Consensus        22 ~~~~v~~ii~~--~~--~vLL~~r~~~----~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   92 (171)
T 3id9_A           22 MQVRVTGILIE--DE--KVLLVKQKVA----NRDWSLPGGRVENGE-TLEEAMIREMREETGLEVKIKKLLYVCDKPDAS   92 (171)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEECSST----TCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSS
T ss_pred             eEEEEEEEEEE--CC--EEEEEEEECC----CCeEECCCccCCCCC-CHHHHHHHHHHHHHCCccccceEEEEEcccCCC
Confidence            34455555555  34  8999999863    689999999999999 999999999999999999877777776543333


Q ss_pred             hcceeeeEeeEeeccccC--CCCCCccchhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAF--KPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~--~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......|++........  ...++.+|+.++.|+|++++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  135 (171)
T 3id9_A           93 PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY  135 (171)
T ss_dssp             SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGG
T ss_pred             CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC
Confidence            232333344433221110  11236689999999999999864

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.67  E-value=2.5e-17  Score=140.28  Aligned_cols=116  Identities=18%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCC-CCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAE-EGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS  144 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve-~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~  144 (259)
                      +..+|.|++++ .++  +|||++|... ..++|.|+||||++| .|| ++.+||+||++|||||.+..+..++.+.....
T Consensus        42 ~~~av~v~i~~-~~~--~vLLvrr~r~-~~~~~~w~lPgG~ve~~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~  116 (207)
T 1mk1_A           42 HFGAVAIVAMD-DNG--NIPMVYQYRH-TYGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPG  116 (207)
T ss_dssp             ECCEEEEEECC-TTS--EEEEEEEEET-TTTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTT
T ss_pred             CCCEEEEEEEc-CCC--EEEEEEeecC-CCCCcEEEeCCccccCCCC-CHHHHHHHHHHHHHCCcccccEEEEEEEcCCC
Confidence            34566666665 345  8999988765 356899999999999 999 99999999999999999988887776532222


Q ss_pred             hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .....++.|++............+.+|+.++.|++++++.+.
T Consensus       117 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~  158 (207)
T 1mk1_A          117 FSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  158 (207)
T ss_dssp             TBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             ccccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            222245666665433211111246789999999999999764

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.67  E-value=6.2e-17  Score=138.32  Aligned_cols=118  Identities=19%  Similarity=0.114  Sum_probs=80.5

Q ss_pred             cceeEEEEEeecCCCceEEEEeeccccccc----ccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLST----HSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP  141 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~----~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~  141 (259)
                      +..||.|++++.+++  +|||+++.+....    .++.|+||||++|+|| ++++||+||++||||+.+..+..++.+..
T Consensus        56 ~~~av~vl~~~~~~~--~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE-~~~~aA~REl~EEtGl~~~~~~~l~~~~~  132 (209)
T 1g0s_A           56 RGHAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLA  132 (209)
T ss_dssp             CCCEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEES
T ss_pred             CCCEEEEEEEECCCC--EEEEEEeecccCCCCCCCCeEEEeCcccCCCCc-CHHHHHHHHHHHHcCcccCcEEEeEEEec
Confidence            445677766663345  8888765432111    2578999999999999 99999999999999999988888887643


Q ss_pred             hHhhhcceeeeEeeEeeccc-cC-CCCCCccchhhhcccchhhhccc
Q 025031          142 FLSKYLLRVVPVIGILHNRK-AF-KPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       142 ~~~~~~~~v~~~v~~~~~~~-~~-~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ........++.|++.+.... .. ....+++|+.++.|+|++++.+.
T Consensus       133 ~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~  179 (209)
T 1g0s_A          133 SPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             CTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             CCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence            33333345677777653211 11 12356788999999999998763

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.67  E-value=3.7e-17  Score=141.13  Aligned_cols=118  Identities=23%  Similarity=0.146  Sum_probs=80.4

Q ss_pred             cceeEEEEEeecCCCceEEEEeeccccc------------------------------ccccceeecCCCCCCC-CCCCc
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRL------------------------------STHSGEVSLPGGKAEE-GDEDD  114 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~------------------------------~~~~G~wsfPGG~ve~-gE~s~  114 (259)
                      +..+|.|++++..++  +|||+++.+..                              ..+++.|+||||++|+ || ++
T Consensus        35 ~~~aV~vl~~~~~~~--~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gE-s~  111 (218)
T 3q91_A           35 THDSVTVLLFNSSRR--SLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGL-SL  111 (218)
T ss_dssp             CCCEEEEEEEEGGGT--EEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSC-CH
T ss_pred             cCCeEEEEEEECCCC--EEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCC-CH
Confidence            456777777774444  78887754321                              0126899999999999 99 99


Q ss_pred             hhhhhHHHHHhhCCCC--cceeeeeehhhhHhhhcceeeeEeeEeeccc---cCCCCCCccchhhhcccchhhhccc
Q 025031          115 GETATREAKEEIGLDP--SLVDVVTVIEPFLSKYLLRVVPVIGILHNRK---AFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       115 ~~aA~REl~EE~GL~~--~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~---~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ++||+||++||||+.+  ..+..++.+..........++.|++.+....   .....++++|+.++.|+|++++.+.
T Consensus       112 ~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~  188 (218)
T 3q91_A          112 EEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAF  188 (218)
T ss_dssp             HHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHH
T ss_pred             HHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence            9999999999999998  7777777754433344556777887765321   1123567789999999999999764

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.67  E-value=8.7e-17  Score=128.82  Aligned_cols=110  Identities=23%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eee--eehhhh-H
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVV--TVIEPF-L  143 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l--~~l~~~-~  143 (259)
                      +|.|+++...+++.+|||++|...     |.|+||||++|+|| ++.+||+||++|||||.+...  .+.  .....+ +
T Consensus         7 ~v~vvi~~~~~~~~~vLl~~r~~~-----g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (149)
T 3son_A            7 QVLVIPFIKTEANYQFGVLHRTDA-----DVWQFVAGGGEDEE-AISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF   80 (149)
T ss_dssp             EEEEEEEEECSSSEEEEEEEESSS-----SCEECEEEECCTTC-CHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred             EEEEEEEEecCCCeEEEEEEEcCC-----CCEeCCccccCCCC-CHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence            444444432233449999999864     89999999999999 999999999999999988753  111  111111 1


Q ss_pred             h-h--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 S-K--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~-~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      . .  .....+.|.+.+... ...+.+ ++|+.++.|++++++.+.
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~E~~~~~W~~~~el~~~  124 (149)
T 3son_A           81 SFNKPYVVPEYCFAIDLTSC-SYQVTL-SLEHSELRWVSYESAIQL  124 (149)
T ss_dssp             CSSSCSEEEEEEEEEECTTT-GGGCCC-CTTEEEEEEECHHHHHHH
T ss_pred             ccCCceEeEEEEEEEEcCCC-CCcccC-CCceeeEEEeCHHHHHHH
Confidence            1 1  222344555554421 123344 489999999999998764

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.66  E-value=7.9e-17  Score=139.45  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-  145 (259)
                      ..+|.++++...+++.+|||++|...  +++|.|+||||++|+|| |+.+||+||++||||+....++.++.+...... 
T Consensus        13 ~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gE-s~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r~~   89 (226)
T 2fb1_A           13 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDP   89 (226)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSS
T ss_pred             eEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCC-CHHHHHHHHHHHHHCCCCCceEEEEEeCCCCcCC
Confidence            34555545532234459999999874  67899999999999999 999999999999999999888888876533211 


Q ss_pred             hcc-eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLL-RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ... ....|++.+...   ....+.+|+.++.|++++++.+.
T Consensus        90 ~~~~v~~~y~a~~~~~---~~~~~~~e~~~~~W~~~~el~~l  128 (226)
T 2fb1_A           90 GERVVSIAYYALININ---EYDRELVQKHNAYWVNINELPAL  128 (226)
T ss_dssp             SSCEEEEEEEEECCTT---SSCHHHHHHTTEEEEETTSCCCB
T ss_pred             CceEEEEEEEEEecCc---ccccCCccccceEEEEHHHhhhc
Confidence            122 222455554432   11234579999999999999753

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.66  E-value=7.1e-17  Score=128.56  Aligned_cols=107  Identities=17%  Similarity=0.220  Sum_probs=74.1

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh-Hhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF-LSK  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~-~~~  145 (259)
                      +.+|.++++++.++  +|||++|.      +|.|+||||++|+|| ++.+||+||+.||||+.+.....++.+..+ +..
T Consensus        18 ~~~~~~vi~~~~~~--~vLl~~r~------~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   88 (148)
T 2azw_A           18 RYAAYIIVSKPENN--TMVLVQAP------NGAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFYSN   88 (148)
T ss_dssp             CCEEEEECEEGGGT--EEEEEECT------TSCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET
T ss_pred             eeEEEEEEECCCCC--eEEEEEcC------CCCEeCCCcccCCCC-CHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCC
Confidence            34454555553345  89999984      289999999999999 999999999999999998888877765322 111


Q ss_pred             -----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 -----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 -----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                           ....++.|.+.....   . ....+|+.++.|++++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~e~~~~~W~~~~el~~~  130 (148)
T 2azw_A           89 HRQTAYYNPGYFYVANTWRQ---L-SEPLERTNTLHWVAPEEAVRL  130 (148)
T ss_dssp             TTTEEEEEEEEEEEEEEEEE---C-SSCC-CCSEEEEECHHHHHHH
T ss_pred             CCCcceEEEEEEEEEEcCcC---C-cCCCCceeeEEEeeHHHHHhh
Confidence                 112244444444322   1 123478889999999999764

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.65  E-value=1.4e-16  Score=128.87  Aligned_cols=113  Identities=17%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeee--hhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV--IEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~--l~~~~  143 (259)
                      .+.+|.+++++ .++  +|||++|+.    ++|.|+||||++|+|| |+.+||+||++|||||.+..+.....  ..+.+
T Consensus        13 ~~~~v~~~i~~-~~~--~vLl~~r~~----~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   84 (165)
T 1f3y_A           13 YRRNVGICLMN-NDK--KIFAASRLD----IPDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEVIAEVPYWLTYDF   84 (165)
T ss_dssp             CCCEEEEEEEC-TTS--CEEEEEETT----EEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCC
T ss_pred             eeeeEEEEEEC-CCC--cEEEEecCC----CCCcEECCeeccCCCC-CHHHHHHHHHHHhhCCChhhhhcccccceeeec
Confidence            34455555665 345  899999874    3599999999999999 99999999999999998754322111  11100


Q ss_pred             hh--------------hcceeeeEeeEeeccccCCCCC-----Cccchhhhcccchhhhcccc
Q 025031          144 SK--------------YLLRVVPVIGILHNRKAFKPTP-----NPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       144 ~~--------------~~~~v~~~v~~~~~~~~~~~~~-----~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..              .+..++.|++.+.... ..+.+     +++|+.++.|++++++.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  146 (165)
T 1f3y_A           85 PPKVREKLNIQWGSDWKGQAQKWFLFKFTGQD-QEINLLGDGSEKPEFGEWSWVTPEQLIDLT  146 (165)
T ss_dssp             CHHHHHHHGGGSCSSCCSCBEEEEEEEECSCG-GGCCCCCCSSSCCSEEEEEEECHHHHHHHB
T ss_pred             CccccccccccccccccCceEEEEEEEecCCc-ccccccCCCCCCChhheeEEecHHHHHHHh
Confidence            00              0123455666654321 12222     35799999999999998743

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.65  E-value=1.5e-16  Score=126.52  Aligned_cols=109  Identities=17%  Similarity=0.094  Sum_probs=74.9

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehh----
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIE----  140 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~----  140 (259)
                      ..+|.+++++.++|  +|||++|+..    +|.|+||||++|+|| ++.+||+||++||||+.+...  .+++...    
T Consensus         9 ~~~v~~~i~~~~~~--~vLl~~r~~~----~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   81 (150)
T 2o1c_A            9 PVSILVVIYAQDTK--RVLMLQRRDD----PDFWQSVTGSVEEGE-TAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEF   81 (150)
T ss_dssp             SEEEEEEEEETTTC--EEEEEECSSS----TTCEESEEEECCTTC-CHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEE
T ss_pred             ceEEEEEEEeCCCC--EEEEEEecCC----CCceECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeEEeeeceeee
Confidence            34666666663335  8999998764    689999999999999 999999999999999987653  3333211    


Q ss_pred             ----h---hHhh--hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          141 ----P---FLSK--YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       141 ----~---~~~~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                          .   .+..  ....++.|.+.+...   . ....+|+.++.|++++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~-~~~~~E~~~~~W~~~~el~~~  132 (150)
T 2o1c_A           82 EIFSHLRHRYAPGVTRNTESWFCLALPHE---R-QIVFTEHLAYKWLDAPAAAAL  132 (150)
T ss_dssp             ECCGGGGGGBCTTCCEEEEEEEEEEESSC---C-CCCCSSSSCEEEEEHHHHHHH
T ss_pred             eeecccccccCCCCcceEEEEEEEEcCCC---C-CcChhHhhccEeecHHHHHhh
Confidence                1   1111  123344555554432   1 123479999999999999764

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.65  E-value=2.3e-16  Score=124.91  Aligned_cols=91  Identities=27%  Similarity=0.324  Sum_probs=69.2

Q ss_pred             EEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh--hcceeeeEeeEeeccc
Q 025031           84 VILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK--YLLRVVPVIGILHNRK  161 (259)
Q Consensus        84 vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~--~~~~v~~~v~~~~~~~  161 (259)
                      |||++|...    ++.|+||||++|+|| |+.+||+||++||||+.+....+++.+......  ....++.|++....  
T Consensus        27 vLl~~r~~~----~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--   99 (139)
T 2yyh_A           27 IVLIERKYP----PVGLALPGGFVEVGE-RVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQG--   99 (139)
T ss_dssp             EEEEEECSS----SCSEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSCTTSCEEEEEEEEEEES--
T ss_pred             EEEEEecCC----CCcEECccccCCCCC-CHHHHHHHHHHHHHCCCcccceEEEEECCCCcCCCceEEEEEEEEecCC--
Confidence            999999864    345999999999999 999999999999999999888887776543221  22334455555522  


Q ss_pred             cCCCCCCccchhhhcccchhhhc
Q 025031          162 AFKPTPNPGEVEEVFDAPLEMFL  184 (259)
Q Consensus       162 ~~~~~~~~~Ev~~v~wvpl~ell  184 (259)
                        .+. ..+|+.++.|++++++.
T Consensus       100 --~~~-~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A          100 --EPK-AGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             --CCC-CCTTEEEEEEECTTSCC
T ss_pred             --ccC-CCCCcceEEEEEHHHCC
Confidence              222 45789999999999998

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.64  E-value=1.3e-16  Score=143.66  Aligned_cols=122  Identities=19%  Similarity=0.233  Sum_probs=92.2

Q ss_pred             ccCccceeEEEEEeecCCCceEEEEeeccccccccccee-ecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce---eeee
Q 025031           62 TFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEV-SLPGGKAEEGDEDDGETATREAKEEIGLDPSLV---DVVT  137 (259)
Q Consensus        62 ~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~w-sfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i---~~l~  137 (259)
                      .++..+.+|.|.++..++++++++++||+..+..|||+| .++||++++|| ++.+||+||++||+||+...+   ..++
T Consensus       113 ~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GE-s~~eaA~REl~EElGI~~~~~~~l~~~g  191 (300)
T 3dup_A          113 TFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADL-SLRQNLIKECAEEADLPEALARQAIPVG  191 (300)
T ss_dssp             GGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTS-CHHHHHHHHHHHHHCCCHHHHTTCEEEE
T ss_pred             ccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCC-CHHHHHHHHHHHHhCCChhhhhhccccc
Confidence            457788899998887655667999999999999999999 58999999999 999999999999999987543   2334


Q ss_pred             ehhhhH-hhhcc---eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          138 VIEPFL-SKYLL---RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       138 ~l~~~~-~~~~~---~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .+.+.. ...++   .++.|.+.+.  .+..+.++++||+++.|+|++++.+.
T Consensus       192 ~i~y~~~~~~G~~~E~~~vy~~~l~--~~~~p~~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          192 AITYCMESPAGIKPDTLFLYDLALP--EDFRPHNTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECC--TTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred             eEEEEEecCCCeEEEEEEEEEEEec--CCCcCCCCchHhheEEEECHHHHHHH
Confidence            433222 11121   2233334443  34556789999999999999999864

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.1e-16  Score=126.03  Aligned_cols=105  Identities=20%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             EEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceee
Q 025031           72 VCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVV  151 (259)
Q Consensus        72 i~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~  151 (259)
                      +++++.+++  +|||++|..     +|.|+||||++|+|| |+.+||+||++||||+.+..+..+..+... ...+...+
T Consensus         9 ~~i~~~~~~--~vLl~~r~~-----~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~~~~~~   79 (146)
T 2jvb_A            9 AAIFNENLS--KILLVQGTE-----SDSWSFPRGKISKDE-NDIDCCIREVKEEIGFDLTDYIDDNQFIER-NIQGKNYK   79 (146)
T ss_dssp             EEEBCTTSS--EEEEECCSS-----SSCCBCCEECCCSSS-CHHHHHHHHHHHHTSCCCSSSSCSSCEEEE-EETTEEEE
T ss_pred             EEEEeCCCC--EEEEEEEcC-----CCcEECCcccCCCCC-CHHHHHHHHHHHHHCCCchHhccccccccc-ccCCceEE
Confidence            334443224  899999764     489999999999999 999999999999999988754322221111 11112233


Q ss_pred             eEeeEe-eccccCCCCCCccchhhhcccchhhhccc
Q 025031          152 PVIGIL-HNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       152 ~~v~~~-~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .|++.. .......+ .+.+|+.++.|++++++.+.
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~E~~~~~W~~~~el~~~  114 (146)
T 2jvb_A           80 IFLISGVSEVFNFKP-QVRNEIDKIEWFDFKKISKT  114 (146)
T ss_dssp             EEEECCCCSSSCCCC-CCSSSCCCEEEEEHHHHHTG
T ss_pred             EEEEEeccccccCCc-CCcchhheeEEeEHHHHHhh
Confidence            333321 21111121 23689999999999999874

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.64  E-value=2.9e-16  Score=133.56  Aligned_cols=109  Identities=20%  Similarity=0.217  Sum_probs=78.1

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      ...+.+|.+++++  ++  +|||++|..     +|.|+||||++|+|| |+.+||+||++||||+.+....+++.+....
T Consensus        65 ~~~~~~v~~vv~~--~~--~vLLv~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~v~~~~~l~~~~~~~  134 (205)
T 3q1p_A           65 QTPKVDIRAVVFQ--NE--KLLFVKEKS-----DGKWALPGGWADVGY-TPTEVAAKEVFEETGYEVDHFKLLAIFDKEK  134 (205)
T ss_dssp             CCCEEEEEEEEEE--TT--EEEEEEC--------CCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred             CCCcceEEEEEEE--CC--EEEEEEEcC-----CCcEECCcCccCCCC-CHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence            3344556555665  34  899999874     489999999999999 9999999999999999998888888776543


Q ss_pred             hh-----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 SK-----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~-----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..     .......|.+.+..   ..+.++ +|+.++.|++++++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~E~~~~~w~~~~el~~l  178 (205)
T 3q1p_A          135 HQPSPSATHVYKIFIGCEIIG---GEKKTS-IETEEVEFFGENELPNL  178 (205)
T ss_dssp             HSCCCCSSCEEEEEEEEEEEE---ECCCCC-TTSCCEEEECTTSCCCB
T ss_pred             cCCCCCCceEEEEEEEEEecC---CccCCC-CcceEEEEEeHHHhhhc
Confidence            22     12223334444433   233445 89999999999998654

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.63  E-value=2.3e-16  Score=134.30  Aligned_cols=109  Identities=22%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      ...+.+|.++++++  |  +|||++|.      .|.|+||||++|+|| ++.+||+||++||||+.+....+++.+....
T Consensus        67 ~~~~~~v~~vv~~~--~--~vLLvrr~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~  135 (206)
T 3o8s_A           67 QTPKLDTRAAIFQE--D--KILLVQEN------DGLWSLPGGWCDVDQ-SVKDNVVKEVKEEAGLDVEAQRVVAILDKHK  135 (206)
T ss_dssp             -CCEEEEEEEEEET--T--EEEEEECT------TSCEECSEEECCTTS-CHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred             CCCCccEEEEEEEC--C--EEEEEEec------CCeEECCeeccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence            34455666666653  4  89999988      489999999999999 9999999999999999998888888876432


Q ss_pred             hh-----hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          144 SK-----YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       144 ~~-----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..     .......|.+.+..   ..+..+ .|+.++.|++++++.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~E~~~~~w~~~~el~~l~  180 (206)
T 3o8s_A          136 NNPAKSAHRVTKVFILCRLLG---GEFQPN-SETVASGFFSLDDLPPLY  180 (206)
T ss_dssp             HCC-----CEEEEEEEEEEEE---ECCCCC-SSCSEEEEECTTSCCCBC
T ss_pred             cCCCCCCceEEEEEEEEEecC---CeecCC-CCceEEEEEeHHHhhhcc
Confidence            21     12223344444433   233444 899999999999987643

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.63  E-value=1.2e-16  Score=139.60  Aligned_cols=112  Identities=21%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCC--CCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEE--GDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-  144 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~--gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-  144 (259)
                      .+|.++++.-.+++.+|||++|...  +++|.|+||||++|+  || |+.+||+||++|||||.+..++.++.+..... 
T Consensus        23 v~v~~vi~~~~~~~~~vLLv~R~~~--~~~g~W~lPGG~ve~~~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~   99 (240)
T 3gz5_A           23 LTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDE-SLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRD   99 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECCSS--SSTTCEECSEEECCTTTCS-BHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSS
T ss_pred             cEEEEEEEEEeCCCcEEEEEECcCC--CCCCCEECCccccCCCCCc-CHHHHHHHHHHHHHCCCCCceeeEEEeCCCccC
Confidence            4444444422235569999999864  678999999999999  99 99999999999999999988888887654321 


Q ss_pred             h-hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          145 K-YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       145 ~-~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      . .......|++.+....   ...+.+|+.++.|++++++.+
T Consensus       100 ~~~~~~~~~y~a~~~~~~---~~~~~~e~~~~~W~~~~el~~  138 (240)
T 3gz5_A          100 ARGWSVTVCYTALMSYQA---CQIQIASVSDVKWWPLADVLQ  138 (240)
T ss_dssp             TTSCEEEEEEEEECCHHH---HHHHHTTCTTEEEEEHHHHTT
T ss_pred             CCceEEEEEEEEEecccc---cCCCCCcccceEEecHHHccc
Confidence            1 1223344555544321   112457899999999999964

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.62  E-value=4.3e-16  Score=131.32  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=67.6

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCC-Cccee-eeeehhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD-PSLVD-VVTVIEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~-~~~i~-~l~~l~~~~  143 (259)
                      .+.++.+++++.+++  +|||++|..     .|.|+||||++|.|| |+.+||+||++|||||. ...+. .+..+..+.
T Consensus        44 ~h~~~~~vv~~~~~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~  115 (197)
T 3fcm_A           44 AHLTSSAFAVNKERN--KFLMIHHNI-----YNSWAWTGGHSDNEK-DQLKVAIKELKEETGVKNPTPLLDKAFALDVLT  115 (197)
T ss_dssp             EEEEEEEEEECTTSC--EEEEEEETT-----TTEEECEEEECTTCC-BHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEE
T ss_pred             ccEEEEEEEEECCCC--EEEEEEecC-----CCCEECCccccCCCC-CHHHHHHHHHHHHHCCCcccccCCCceEEEEee
Confidence            445555556653333  899999774     489999999999999 99999999999999998 32111 111111110


Q ss_pred             hh----hc------ce-eeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 SK----YL------LR-VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~----~~------~~-v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..    .+      .. ...|++.+..  .....++++|+.++.|+|++++.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~  167 (197)
T 3fcm_A          116 VNGHIKRGKYVSSHLHLNLTYLIECSE--DETLMLKEDENSGVMWIPFNEISKY  167 (197)
T ss_dssp             ECCEEETTEEECCEEEEEEEEEEECCT--TSCCCCCC----CEEEEEGGGHHHH
T ss_pred             ecCccccCcccCCceeEEEEEEEEeCC--CcccCCCcccccceEEccHHHHHhh
Confidence            00    01      11 1334444332  2234567799999999999999764

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.62  E-value=4.6e-16  Score=138.28  Aligned_cols=116  Identities=14%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             ccccccCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee
Q 025031           58 RYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT  137 (259)
Q Consensus        58 ~~~~~~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~  137 (259)
                      .+...++....+|++++..  ++  +|||++|+...   +|.|+||||++|+|| |+++||+||++|||||.+..+.+++
T Consensus       131 C~~~~yp~~~~~viv~v~~--~~--~vLL~rr~~~~---~g~w~lPgG~vE~GE-t~eeAa~REv~EEtGl~v~~~~~~~  202 (269)
T 1vk6_A          131 CRERYYPQIAPCIIVAIRR--DD--SILLAQHTRHR---NGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVT  202 (269)
T ss_dssp             SSCEECCCCEEEEEEEEEE--TT--EEEEEEETTTC---SSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CCCEecCCCCcEEEEEEEe--CC--EEEEEEecCCC---CCcEECCcCcCCCCC-CHHHHHHHHHHHHhCceeeeEEEEE
Confidence            3444555455566555544  34  89999998652   689999999999999 9999999999999999999888888


Q ss_pred             ehhhhHhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          138 VIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       138 ~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .....+.  ...+..|++.+...   .+.++.+|+.++.|++++++...
T Consensus       203 ~~~~~~~--~~~~~~f~a~~~~~---~~~~~~~E~~~~~W~~~~el~~l  246 (269)
T 1vk6_A          203 SQPWPFP--QSLMTAFMAEYDSG---DIVIDPKELLEANWYRYDDLPLL  246 (269)
T ss_dssp             EEEEETT--EEEEEEEEEEEEEC---CCCCCTTTEEEEEEEETTSCCSC
T ss_pred             EEecCCC--CEEEEEEEEEECCC---CcCCCCcceEEEEEEEHHHhhhc
Confidence            7653322  22445566655432   34567789999999999999764

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.61  E-value=1.1e-15  Score=128.18  Aligned_cols=106  Identities=21%  Similarity=0.064  Sum_probs=77.7

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      .+.+|.+++++  ++  +|||++|...  ..+|.|+||||++|.|| |+.+||+||++|||||.+....+++....  ..
T Consensus        39 ~~~~v~~ii~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~  109 (189)
T 3cng_A           39 PKVIVGCIPEW--EN--KVLLCKRAIA--PYRGKWTLPAGFMENNE-TLVQGAARETLEEANARVEIRELYAVYSL--PH  109 (189)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEE--GG
T ss_pred             CceEEEEEEEe--CC--EEEEEEccCC--CCCCeEECceeeccCCC-CHHHHHHHHHHHHHCCccccceeEEEEec--CC
Confidence            34455555555  35  8999999875  34789999999999999 99999999999999999877666655322  22


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFL  184 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell  184 (259)
                      ....++.|++.....   .+. ..+|+.++.|++++++.
T Consensus       110 ~~~~~~~f~~~~~~~---~~~-~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          110 ISQVYMLFRAKLLDL---DFF-PGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             GTEEEEEEEEEECCS---CCC-CCTTEEEEEEECTTTCC
T ss_pred             CcEEEEEEEEEeCCC---ccC-CCccceeEEEECHHHcC
Confidence            233455566655432   222 35789999999999997

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.61  E-value=6e-16  Score=134.89  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=83.5

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCC------CCCc---hhhhhHHHHHhhCCCCcc-
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEG------DEDD---GETATREAKEEIGLDPSL-  132 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~g------E~s~---~~aA~REl~EE~GL~~~~-  132 (259)
                      +..+.||.|++++ .+|  +|||++|+..+..+||.|++| ||++++|      | ++   .+||+||++|||||.+.. 
T Consensus        56 g~~h~av~v~v~~-~~g--~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E-~~~~~~~Aa~REl~EElGi~~~~v  131 (235)
T 2dho_A           56 GLLHRAFSVFLFN-TEN--KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEES-DALGVRRAAQRRLKAELGIPLEEV  131 (235)
T ss_dssp             TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCGGGS
T ss_pred             CceEEEEEEEEEc-CCC--EEEEEEecCcCCCCCCcEEeccCceecCCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence            4466778887776 455  899999999888899999999 5999999      7 74   999999999999998652 


Q ss_pred             ----eeeeeehhhhHh-hhc----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          133 ----VDVVTVIEPFLS-KYL----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       133 ----i~~l~~l~~~~~-~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                          +..++.+.+... ..+    ..++.|++...    ..+.++++|+.++.|++++++.+.
T Consensus       132 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~----~~~~~~~~Ev~~~~wv~~~el~~~  190 (235)
T 2dho_A          132 PPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMN----VTLNPDPNEIKSYCYVSKEELKEL  190 (235)
T ss_dssp             CGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ChhhcEEEEEEEEeccCCCccceeEEEEEEEEEEC----CCCcCChHHEEEEEEEcHHHHHHH
Confidence                455665432211 111    12334444432    244678899999999999999763

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.60  E-value=6.4e-17  Score=138.59  Aligned_cols=135  Identities=20%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee-----eeeehhhh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD-----VVTVIEPF  142 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~-----~l~~l~~~  142 (259)
                      ++|++++++ .++  +|||++|      ++|.|+||||++|+||.++.+||+||++||||+.+..+.     .++.....
T Consensus        45 ~~vv~~i~~-~~~--~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~  115 (212)
T 1u20_A           45 QAKLFDRVP-IRR--VLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVRE  115 (212)
T ss_dssp             CCEETTTEE-CCE--EEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEEC
T ss_pred             ceEEEEEEe-cCC--EEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEecccc
Confidence            344444444 233  8999988      368999999999999878999999999999999887553     34444332


Q ss_pred             HhhhcceeeeEeeEeeccc-------cCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceE
Q 025031          143 LSKYLLRVVPVIGILHNRK-------AFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKY  215 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~~-------~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~  215 (259)
                      +. ....++.|++.+....       ......+.+|+.+++|+|++++.+...             ..+.|.     ...
T Consensus       116 ~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~-------------~~p~f~-----~~~  176 (212)
T 1u20_A          116 HP-QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVG-------------GLPAFL-----CNN  176 (212)
T ss_dssp             TT-SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSST-------------BHHHHT-----TSC
T ss_pred             CC-CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhhhc-------------CCchhh-----hhh
Confidence            22 3455667776654211       011123457889999999999965311             112222     134


Q ss_pred             EeeehhHhhhhhhce
Q 025031          216 LIWGITAAILVRAAS  230 (259)
Q Consensus       216 ~IWGlTa~il~~~~~  230 (259)
                      .||+++++|+..+..
T Consensus       177 ~i~~a~~~l~~~l~~  191 (212)
T 1u20_A          177 FIGNSKSQLLYALRS  191 (212)
T ss_dssp             BCTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh
Confidence            799999999876654

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.60  E-value=2.7e-16  Score=132.98  Aligned_cols=95  Identities=20%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|...    +|.|+||||++|+|| ++++||+||++|||||.+....+++.+....  ....++.|++.+.....
T Consensus        55 ~vLLv~r~~~----~g~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~f~~~~~~~~~  127 (194)
T 2fvv_A           55 EVLLVSSSRH----PDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLE  127 (194)
T ss_dssp             EEEEEECSSC----TTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTEEEEEEEEEEEEECS
T ss_pred             EEEEEEEeCC----CCcEECCCCcCCCCc-CHHHHHHHHHHHHhCCccccceEEEEEEcCC--CceEEEEEEEEEccccC
Confidence            8999998753    589999999999999 9999999999999999988888888765322  22234555555443111


Q ss_pred             CCCCCCccchhhhcccchhhhcc
Q 025031          163 FKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                       ....+.++..++.|++++++.+
T Consensus       128 -~~~~~~e~~~~~~W~~~~el~~  149 (194)
T 2fvv_A          128 -DWEDSVNIGRKREWFKIEDAIK  149 (194)
T ss_dssp             -SCHHHHHHCCCEEEEEHHHHHH
T ss_pred             -CCCCcccccceEEEEEHHHHHH
Confidence             1001112346889999999875

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.60  E-value=8.8e-16  Score=134.76  Aligned_cols=115  Identities=16%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCC-CCCCCC------CCCc---hhhhhHHHHHhhCCCCcc-
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPG-GKAEEG------DEDD---GETATREAKEEIGLDPSL-  132 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPG-G~ve~g------E~s~---~~aA~REl~EE~GL~~~~-  132 (259)
                      +..+.||.|++++ .+|  +|||++|+..+..+||.|++|+ |++++|      | ++   .+||+||++|||||.+.. 
T Consensus        67 g~~h~av~v~v~~-~~g--~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~E-t~~~~~eAA~REl~EElGi~~~~v  142 (246)
T 2pny_A           67 GLLHRAFSVVLFN-TKN--RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEK-DAIGVRRAAQRRLQAELGIPGEQI  142 (246)
T ss_dssp             TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCTTTC
T ss_pred             CcEEEEEEEEEEe-CCC--EEEEEEecCCCCCCCCceEeccCceeccCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence            3456777777776 455  8999999998888999999995 999999      7 77   899999999999998763 


Q ss_pred             ----eeeeeehhhhHh-hhc----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          133 ----VDVVTVIEPFLS-KYL----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       133 ----i~~l~~l~~~~~-~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                          +..++.+.+... ..+    ..++.|++...    ..+.++++|+.++.|++++++.+.
T Consensus       143 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~----~~~~~~~~Ev~~~~wv~~eel~~~  201 (246)
T 2pny_A          143 SPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKN----VTLNPDPSETKSILYLSQEELWEL  201 (246)
T ss_dssp             CGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             CccccEEEEEEEEEecCCCceeeeEEEEEEEEEEC----CCCCCChHHeeEEEEEeHHHHHHH
Confidence                455555432211 111    12233444432    245678899999999999999763

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.59  E-value=1.5e-15  Score=124.95  Aligned_cols=84  Identities=25%  Similarity=0.290  Sum_probs=61.6

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEeecccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKA  162 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~~~~~~  162 (259)
                      +|||++|.      +|.|+||||++|+|| |+.+||+||++|||||.+..+..++.+....    ...+.|++.+.    
T Consensus        28 ~vLL~~r~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~~f~~~~~----   92 (163)
T 3f13_A           28 GVLVTASR------GGRYNLPGGKANRGE-LRSQALIREIREETGLRINSMLYLFDHITPF----NAHKVYLCIAQ----   92 (163)
T ss_dssp             EEEEEECC---------BBCSEEECCTTC-CHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEEEEEEEC-----
T ss_pred             EEEEEEEC------CCeEECCceeCCCCC-CHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEEEEEEEEC----
Confidence            79999885      489999999999999 9999999999999999998888877643211    33444555432    


Q ss_pred             CCCCCCccchhhhcccchhh
Q 025031          163 FKPTPNPGEVEEVFDAPLEM  182 (259)
Q Consensus       163 ~~~~~~~~Ev~~v~wvpl~e  182 (259)
                      ..+.++ +|+.++.|++.+.
T Consensus        93 ~~~~~~-~E~~~~~W~~~~~  111 (163)
T 3f13_A           93 GQPKPQ-NEIERIALVSSPD  111 (163)
T ss_dssp             CCCCCC-TTCCEEEEESSTT
T ss_pred             CcCccC-CCceEEEEECccc
Confidence            234444 4999999999443

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.59  E-value=5.9e-16  Score=134.78  Aligned_cols=68  Identities=37%  Similarity=0.538  Sum_probs=57.4

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCC-------------------chhhhhHHHHH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDED-------------------DGETATREAKE  124 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s-------------------~~~aA~REl~E  124 (259)
                      ..|.||++|++.+..+|+++|||++|+.+...++|.|.||||++|++|.+                   +..||+||++|
T Consensus         6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E   85 (232)
T 3qsj_A            6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE   85 (232)
T ss_dssp             CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence            34889999988774333389999999998778899999999999999933                   58999999999


Q ss_pred             hhCCCCc
Q 025031          125 EIGLDPS  131 (259)
Q Consensus       125 E~GL~~~  131 (259)
                      ||||.+.
T Consensus        86 E~Gl~l~   92 (232)
T 3qsj_A           86 EIGWLLA   92 (232)
T ss_dssp             HHSCCCS
T ss_pred             HhCceec
Confidence            9999754

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.58  E-value=8.7e-16  Score=123.61  Aligned_cols=105  Identities=15%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLL  148 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~  148 (259)
                      +|.+++++  ++  +|||++|       +|.|+||||++|+|| ++.+||+||++||||+.+....+++.....+...+.
T Consensus        21 ~~~~ii~~--~~--~vLl~~r-------~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   88 (154)
T 2pqv_A           21 RATALIVQ--NH--KLLVTKD-------KGKYYTIGGAIQVNE-STEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGV   88 (154)
T ss_dssp             EEEECCEE--TT--EEEEEEE-------TTEEECEEEECBTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTE
T ss_pred             EEEEEEEE--CC--EEEEEec-------CCeEECcccCcCCCC-CHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCC
Confidence            44444444  34  8999998       489999999999999 999999999999999998877777665433322221


Q ss_pred             ----eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          149 ----RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       149 ----~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                          ..+.|++.+...... ...+.+|+.++.|++++++.+.
T Consensus        89 ~~~~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           89 SYHNIEFHYLVDLLEDAPL-TMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEEEEEEEESSCCCS-EEEETTEEEEEEEEEGGGGGGS
T ss_pred             cceEEEEEEEEEecCCCCc-ccCCCCceeeEEEeEHHHHhhc
Confidence                223444444322110 0123467889999999999874

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.58  E-value=2.7e-15  Score=123.10  Aligned_cols=111  Identities=16%  Similarity=0.167  Sum_probs=78.6

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL--  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~--  143 (259)
                      .+.+|.+++++ .+|  +|||++|..     +|.|+||||++|.|| ++.+||+||++||||+.+..+.+++......  
T Consensus         7 ~~~~v~~~i~~-~~~--~vLl~~r~~-----~~~w~~p~G~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~   77 (164)
T 2kdv_A            7 YRPNVGIVICN-RQG--QVMWARRFG-----QHSWQFPQGGINPGE-SAEQAMYRELFEEVGLSRKDVRILASTRNWLRY   77 (164)
T ss_dssp             EEEEEEEEEEC-TTS--EEEEEEETT-----CCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEE
T ss_pred             CCcEEEEEEEc-cCC--EEEEEEEcC-----CCeEECCeeecCCCC-CHHHHHHHHHHHHHCCCccceEEEEEecceeEE
Confidence            34556666665 345  899999875     489999999999999 9999999999999999998888888764321  


Q ss_pred             --hh-----------hcceeeeEeeEeeccccCCCCCC---ccchhhhcccchhhhccc
Q 025031          144 --SK-----------YLLRVVPVIGILHNRKAFKPTPN---PGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 --~~-----------~~~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~ell~~  186 (259)
                        ..           .+..++.|++.+.... ....++   .+|+.++.|++++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           78 KLPKRLVRWDTKPVCIGQKQKWFLLQLVSGD-AEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             ECCTTTCCTTSSSCCCEEEEEEEEEEESSCG-GGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             ecCcceeeeccCcccccceeEEEEEEecCCc-cccccCCCCCchhceEEEecHHHhhhh
Confidence              00           0113455555544321 122332   359999999999987653

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.58  E-value=1.3e-15  Score=140.89  Aligned_cols=96  Identities=22%  Similarity=0.257  Sum_probs=77.8

Q ss_pred             CCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031           78 DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL  157 (259)
Q Consensus        78 ~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~  157 (259)
                      .+|  +|||++|... +.++|.|+||||++|.|  ++++|+.||+.||+|+.+.....++.+.+.++.....++.|.+.+
T Consensus       250 ~~g--~vLL~rR~~~-g~~~GlWefPGG~ve~g--t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~~  324 (369)
T 3fsp_A          250 DEG--RVLIRKRDST-GLLANLWEFPSCETDGA--DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRL  324 (369)
T ss_dssp             SSS--EEEEEECCSS-STTTTCEECCEEECSSS--CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEEE
T ss_pred             CCC--EEEEEECCCC-CCcCCcccCCCcccCCC--CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEEE
Confidence            345  8999999875 67999999999999998  889999999999999998888878777666666566666666654


Q ss_pred             eccccCCCCCCccchhhhcccchhhhccc
Q 025031          158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..        ...|..++.|++++++.+.
T Consensus       325 ~~--------~~~e~~~~~Wv~~~el~~~  345 (369)
T 3fsp_A          325 VH--------GGPVEEPYRLAPEDELKAY  345 (369)
T ss_dssp             CC--------SSCCCTTEEEEEGGGGGGS
T ss_pred             cC--------CCCCccccEEeeHHHhhhC
Confidence            32        1367889999999998763

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.56  E-value=1.6e-15  Score=134.89  Aligned_cols=111  Identities=17%  Similarity=0.038  Sum_probs=70.4

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      .+|.+++++..+|  +|||++|...    +|.|+||||++|+|| ++.+||+||++||||+++..+..+..+.. ....+
T Consensus       102 ~~v~avv~~~~~~--~vLLv~r~~~----~g~W~lPgG~ve~gE-s~~eAA~REl~EEtGl~~~~l~~~~~~~~-~~~~~  173 (271)
T 2a6t_A          102 PVRGAIMLDMSMQ--QCVLVKGWKA----SSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFID-MTIRG  173 (271)
T ss_dssp             CEEEEEEBCSSSS--EEEEEEESST----TCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEE-EEETT
T ss_pred             CeEEEEEEECCCC--EEEEEEEeCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCceeeeeeeeecc-CCcCC
Confidence            3444555553335  8999998653    589999999999999 99999999999999998876432221110 01112


Q ss_pred             ceeeeEeeEeeccccCCCC-CCccchhhhcccchhhhcccc
Q 025031          148 LRVVPVIGILHNRKAFKPT-PNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~-~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..++.|++..... ..... .+.+|+.++.|++++++.+..
T Consensus       174 ~~~~~f~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~  213 (271)
T 2a6t_A          174 QNVRLYIIPGISL-DTRFESRTRKEISKIEWHNLMDLPTFK  213 (271)
T ss_dssp             EEEEEEEECCCCT-TCCCC------EEEEEEEEGGGSTTCC
T ss_pred             ceEEEEEEEEecC-cccCCCCCccceeEEEEEEHHHHHHHH
Confidence            2344455543221 11112 256899999999999997643

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.56  E-value=3.1e-15  Score=137.70  Aligned_cols=102  Identities=20%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             CceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh-------------
Q 025031           80 GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY-------------  146 (259)
Q Consensus        80 g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~-------------  146 (259)
                      ++.+|||++|...     |.|+||||++|+|| ++.+||+||++|||||.+....+++.....+...             
T Consensus        36 ~~~~vLLv~r~~~-----g~W~lPgG~ve~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~  109 (364)
T 3fjy_A           36 DSIEVCIVHRPKY-----DDWSWPKGKLEQNE-THRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTAD  109 (364)
T ss_dssp             TTEEEEEEEETTT-----TEEECCEEECCTTC-CHHHHHHHHHHHHHSCCEEEEEEEEEEC-------------------
T ss_pred             CceEEEEEEcCCC-----CCEECCcCCCCCCC-CHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccC
Confidence            4569999998553     89999999999999 9999999999999999998888888765544321             


Q ss_pred             cceeeeEeeEeeccc---------cCCCCCCccchhhhcccchhhhcccc
Q 025031          147 LLRVVPVIGILHNRK---------AFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~---------~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ...++.|++......         .....++++|+.++.|++++++.+..
T Consensus       110 ~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  159 (364)
T 3fjy_A          110 TKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL  159 (364)
T ss_dssp             --CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC
T ss_pred             ceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh
Confidence            244566666654321         11223567899999999999987643

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.55  E-value=6e-15  Score=131.06  Aligned_cols=98  Identities=20%  Similarity=0.252  Sum_probs=70.7

Q ss_pred             ceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCc--ceeeeeehhhhHh-h-hcceeeeEeeE
Q 025031           81 ELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS--LVDVVTVIEPFLS-K-YLLRVVPVIGI  156 (259)
Q Consensus        81 ~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~--~i~~l~~l~~~~~-~-~~~~v~~~v~~  156 (259)
                      +.+|||++|...  +++|.|+||||++|+|| ++.+||+||++|||||.+.  .+..++.+..... . .....+.|++.
T Consensus        55 ~~~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~r~~~~~~~~~~y~a~  131 (273)
T 2fml_A           55 QLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAF  131 (273)
T ss_dssp             EEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEE
T ss_pred             CcEEEEEEccCC--CCCCcEECCccCCCCCc-CHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCCCCCCCceEEEEEEEEE
Confidence            679999999876  67899999999999999 9999999999999997654  4555555432211 1 11233455565


Q ss_pred             eeccccCCCCCCccchhhhcccchhhhcc
Q 025031          157 LHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       157 ~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      +....    ....+|+.++.|++++++.+
T Consensus       132 ~~~~~----~~~~~E~~~~~W~~~~e~~~  156 (273)
T 2fml_A          132 IGEEP----LIAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             CCCCC----CCCCTTEEEEEEEEEEEETT
T ss_pred             eCCCC----CCCCcceeeEEEEEhhHhhh
Confidence            54321    23457899999999997543

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.55  E-value=4.5e-15  Score=124.53  Aligned_cols=94  Identities=19%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc-----ceeeeEeeEe
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL-----LRVVPVIGIL  157 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~-----~~v~~~v~~~  157 (259)
                      +|||++|..     +|.|+||||++|+|| ++.+||+||++|||||.+....+++.+........     ..++.|.+..
T Consensus        16 ~vLL~~r~~-----~g~W~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~   89 (188)
T 3fk9_A           16 QVLLLQKPR-----RGWWVAPGGKMEAGE-SILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATE   89 (188)
T ss_dssp             EEEEEECTT-----TCCEECCEEECCTTC-CHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESC
T ss_pred             EEEEEEeCC-----CCeEECCeecccCCC-CHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEEC
Confidence            899999853     589999999999999 99999999999999999888888777654432221     1233444432


Q ss_pred             eccccCCCCCCccchhhhcccchhhhccc
Q 025031          158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..   ..+.. ..|..++.|++++++.+.
T Consensus        90 ~~---~~~~~-~~e~~~~~W~~~~el~~~  114 (188)
T 3fk9_A           90 HE---GEMLK-QSPEGKLEWKKKDEVLEL  114 (188)
T ss_dssp             EE---SCCCS-EETTEEEEEEEGGGGGGS
T ss_pred             CC---CCCcC-CCCCEeEEEEEHHHhhhC
Confidence            22   22222 345578999999999764

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.52  E-value=5.9e-15  Score=133.56  Aligned_cols=112  Identities=18%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh---hh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE---PF  142 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~---~~  142 (259)
                      .+.+|.++++.  ++  +|||++|...  ..+|.|+||||++|+|| ++.+||+||++||||+.+....+++.+.   .+
T Consensus       202 ~~~~v~~vi~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  274 (341)
T 2qjo_A          202 TFITTDAVVVQ--AG--HVLMVRRQAK--PGLGLIALPGGFIKQNE-TLVEGMLRELKEETRLKVPLPVLRGSIVDSHVF  274 (341)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEECCSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEE
T ss_pred             CceEEEEEEEe--CC--EEEEEEecCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHhhhhCCccccccccccccceEEE
Confidence            34555555554  34  8999999864  45799999999999999 9999999999999999988665543211   11


Q ss_pred             H--hh--h-cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcc
Q 025031          143 L--SK--Y-LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       143 ~--~~--~-~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      .  ..  . ....+.|++.+.... .....+.+|+.++.|++++++.+
T Consensus       275 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~  321 (341)
T 2qjo_A          275 DAPGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMSLADLYA  321 (341)
T ss_dssp             CCTTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEEHHHHHH
T ss_pred             eCCCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEeeHHHHhh
Confidence            1  11  1 122345666554321 11124568999999999999976

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.51  E-value=6.7e-15  Score=119.16  Aligned_cols=49  Identities=29%  Similarity=0.419  Sum_probs=43.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeee
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVT  137 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~  137 (259)
                      +|||++|..     +|.|+||||++|+|| ++.+||+||++||||+.+.....++
T Consensus        13 ~vLL~~r~~-----~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~   61 (156)
T 1k2e_A           13 KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTY   61 (156)
T ss_dssp             EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCCC
T ss_pred             EEEEEEEcC-----CCcEECCeeecCCCC-CHHHHHHHHHHHHHCCcceecccee
Confidence            899999875     489999999999999 9999999999999999887666554

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.51  E-value=2.8e-15  Score=128.69  Aligned_cols=98  Identities=24%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             EEEEeecccccc--cccceeec-CCCCCCCCCCC------chhhhhHHHHHhhCCCCcceeeeeehhhhH-hhhcce-ee
Q 025031           83 RVILTKRASRLS--THSGEVSL-PGGKAEEGDED------DGETATREAKEEIGLDPSLVDVVTVIEPFL-SKYLLR-VV  151 (259)
Q Consensus        83 ~vLL~kRs~~~~--~~~G~wsf-PGG~ve~gE~s------~~~aA~REl~EE~GL~~~~i~~l~~l~~~~-~~~~~~-v~  151 (259)
                      +||+++|.....  ...|.|+| |||++|+|| +      +++||+||++|||||.+....+++.+.... ...... ..
T Consensus        80 rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GE-s~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~~~~l~~  158 (211)
T 3e57_A           80 RVLITKRTTKQSEKRLHNLYSLGIGGHVREGD-GATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVSRVHLGA  158 (211)
T ss_dssp             EEEEEEC------------CBSSEECCCBGGG-CSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHHHTEEEE
T ss_pred             EEEEEEECCCCCcccccCCcccccceEEeCCC-CCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCCeEEEEE
Confidence            899999987642  25688999 999999999 7      499999999999999988888888765421 111111 22


Q ss_pred             eEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          152 PVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       152 ~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .|.+....   .  .+...|+.++.|++++++.+.
T Consensus       159 ~f~~~~~~---g--~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          159 LFLGRGKF---F--SVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             EEEEEEEE---E--EESCTTTCEEEEEEHHHHHHH
T ss_pred             EEEEEeCC---c--eeCCCCeEEEEEEEHHHHHHh
Confidence            34444332   1  235568889999999999774

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.50  E-value=1.8e-14  Score=131.23  Aligned_cols=115  Identities=14%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeeh---h
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVI---E  140 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l---~  140 (259)
                      +....+|.++++.  ++  +|||++|...  ..+|.|+||||++|+|| |+++||+||++||||+.+....+++.+   .
T Consensus       205 ~~~~~~v~~vv~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~v~~~~~~~~~~~~~  277 (352)
T 2qjt_B          205 KPNFVTVDALVIV--ND--HILMVQRKAH--PGKDLWALPGGFLECDE-TIAQAIIRELFEETNINLTHEQLAIAKRCEK  277 (352)
T ss_dssp             CCEEEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSCCHHHHHHHEEEEE
T ss_pred             CCCceEEEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHHHhhCCCcccchhcceeeeeE
Confidence            3344555555554  34  8999999875  35799999999999999 999999999999999998754433211   0


Q ss_pred             hh--Hhh---hcceeeeEeeEeeccccCCCCCCccchhhhcccch-hhhcc
Q 025031          141 PF--LSK---YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPL-EMFLK  185 (259)
Q Consensus       141 ~~--~~~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl-~ell~  185 (259)
                      .+  ...   .....+.|++.+..........+.+|+.++.|+++ +++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~  328 (352)
T 2qjt_B          278 VFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKN  328 (352)
T ss_dssp             EECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHH
T ss_pred             EecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHh
Confidence            11  111   11234455565543210111234689999999999 99876

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.44  E-value=1.9e-14  Score=123.97  Aligned_cols=125  Identities=17%  Similarity=0.183  Sum_probs=79.0

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcc--eeeeeehhhhHhh-hcceeeeEeeEeec
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSL--VDVVTVIEPFLSK-YLLRVVPVIGILHN  159 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~--i~~l~~l~~~~~~-~~~~v~~~v~~~~~  159 (259)
                      ++||+.|.      +|.|+||||++|+||.++++||+||++||||+.+..  +..+..+...... .....+.|++.+..
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~  139 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL  139 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence            45666654      489999999999998789999999999999998863  2222222111111 12234445555442


Q ss_pred             ccc-------CCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHhhhhhhcee
Q 025031          160 RKA-------FKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVRAASV  231 (259)
Q Consensus       160 ~~~-------~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~il~~~~~~  231 (259)
                      ...       .....+.+|+.+++|+|++++.+..+             .+|.|-     ....|||++++|+..+...
T Consensus       140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d~~~-------------~~P~~L-----~~~~l~~~~~~i~~~l~~~  200 (217)
T 2xsq_A          140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG-------------GLPTFL-----ENSFIGSAREQLLEALQDL  200 (217)
T ss_dssp             HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTTSST-------------BHHHHT-----TSCBCTTHHHHHHHHHHHT
T ss_pred             ccceecccccccccccCCceeeEEEEEHHHhhhccc-------------cCcHHH-----HHHHHHHHHHHHHHHHHhc
Confidence            111       00123457899999999999865322             112221     1246899999999888653

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.32  E-value=8.2e-13  Score=118.50  Aligned_cols=45  Identities=31%  Similarity=0.384  Sum_probs=40.9

Q ss_pred             CceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCC
Q 025031           80 GELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDP  130 (259)
Q Consensus        80 g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~  130 (259)
                      +.++|||++|...     |.|+||||++|+|| ++.+||+||++||||+..
T Consensus       137 ~~l~vLl~~r~~~-----g~W~lPGG~Ve~GE-s~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          137 HILQFVAIKRKDC-----GEWAIPGGMVDPGE-KISATLKREFGEEALNSL  181 (292)
T ss_dssp             BCEEEEEEECTTT-----CSEECCCEECCTTC-CHHHHHHHHHHHHHSCGG
T ss_pred             CceEEEEEEecCC-----CcEeCCCcccCCCC-CHHHHHHHHHHHHhCCcc
Confidence            3578999999864     89999999999999 999999999999999973

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.91  E-value=5.8e-10  Score=94.45  Aligned_cols=58  Identities=22%  Similarity=0.302  Sum_probs=48.3

Q ss_pred             cCccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCC
Q 025031           63 FRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL  128 (259)
Q Consensus        63 ~~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL  128 (259)
                      .+.|+.++.|+++++ .+.++|||.++..      +.|.||||++|+|| ++++|+.||+.||+|+
T Consensus        55 ~g~R~sV~avil~~~-~~~phVLLlq~~~------~~f~LPGGkle~gE-~~~eaL~REL~EELg~  112 (208)
T 3bho_A           55 IGMRRTVEGVLIVHE-HRLPHVLLLQLGT------TFFKLPGGELNPGE-DEVEGLKRLMTEILGR  112 (208)
T ss_dssp             HCSEEEEEEEEEEEE-TTEEEEEEEEEET------TEEECSEEECCTTC-CHHHHHHHHHHHHHCC
T ss_pred             hCCceEEEEEEEEcC-CCCcEEEEEEcCC------CcEECCCcccCCCC-CHHHHHHHHHHHHhCC
Confidence            366777777777763 4557899999743      58999999999999 9999999999999995

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.85  E-value=1.2e-09  Score=91.70  Aligned_cols=68  Identities=15%  Similarity=0.053  Sum_probs=46.3

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCC-CCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL-DPSLVDVVTVIEPFLSKYLLRVVPVIGIL  157 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL-~~~~i~~l~~l~~~~~~~~~~v~~~v~~~  157 (259)
                      .||++.|-.      |.|+||||++|+||.|+++|+.||+.||+|+ .+.....+.....-+. ..+..+.|.+.+
T Consensus        45 ~iLmQ~R~~------G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl  113 (214)
T 3kvh_A           45 SVLMQMRFD------GLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQL  113 (214)
T ss_dssp             EEEEEEETT------SCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEEC
T ss_pred             eEEEeeeeC------CEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEe
Confidence            467776553      8999999999999999999999999999997 5666666655433332 234455555543

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.52  E-value=1.1e-07  Score=86.19  Aligned_cols=93  Identities=15%  Similarity=0.080  Sum_probs=61.5

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhh-CCCCcceeeeeehhhhHhhh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEI-GLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~-GL~~~~i~~l~~l~~~~~~~  146 (259)
                      ..|.+++..  +|  +|||+  .+     .| |++|||.++.   +..++|+||++||+ ||.++...+++.++...  .
T Consensus       184 ~~vgaii~~--~g--~vLL~--~~-----~G-W~LPG~~~~~---~~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~  246 (321)
T 3rh7_A          184 IRLGAVLEQ--QG--AVFLA--GN-----ET-LSLPNCTVEG---GDPARTLAAYLEQLTGLNVTIGFLYSVYEDKS--D  246 (321)
T ss_dssp             EEEEEEEES--SS--CEEEB--CS-----SE-EBCCEEEESS---SCHHHHHHHHHHHHHSSCEEEEEEEEEEECTT--T
T ss_pred             ceEEEEEEE--CC--EEEEe--eC-----CC-ccCCcccCCC---ChhHHHHHHHHHHhcCCEEeeceEEEEEEcCC--C
Confidence            445554444  35  79999  22     38 9999886554   44569999999997 99999888888765432  1


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ......|.+.+.+.          +..++.|++++++....
T Consensus       247 ~~~~i~f~~~~~~g----------~~~e~~~f~~~elp~~~  277 (321)
T 3rh7_A          247 GRQNIVYHALASDG----------APRQGRFLRPAELAAAK  277 (321)
T ss_dssp             CCEEEEEEEEECSS----------CCSSSEEECHHHHTTCE
T ss_pred             ceEEEEEEEEeCCC----------CeeeeEEECHHHCCCcc
Confidence            12222344443321          12778999999997664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	1e-35
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	4e-09
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	2e-08
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	6e-08
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	5e-07
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	2e-06
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-06
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	8e-06
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	1e-05
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	2e-05
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	2e-05
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	8e-05
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	1e-04
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-04
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-04
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-04
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-04
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-04
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	0.002

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  123 bits (309), Expect = 1e-35
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 8/175 (4%)

Query: 53  ASPTVRYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDE 112
           +  T    +    ++AAVLV L      + RV+LT R+S L TH G+++ PGG  +   E
Sbjct: 18  SGRTRTALELPHYRRAAVLVALT--READPRVLLTVRSSELPTHKGQIAFPGGSLDA-GE 74

Query: 113 DDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEV 172
              + A REA+EE+ LDP+ V ++  ++   +     V PV+G +    A        EV
Sbjct: 75  TPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPE-ALDTLRVTPEV 133

Query: 173 EEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAAILVR 227
            ++    L         R       G +  L+ + +        IWG+TA +L  
Sbjct: 134 AQIITPTLAELRAVPLVRERRTLPDGTEVPLYRYPWRG----LDIWGMTARVLHD 184

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 15/152 (9%)

Query: 66  KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEE 125
            +   LV + +      RV+L  +       +G  +  GGK +EG E   + A RE +EE
Sbjct: 4   SRLYTLVLVLQPQ----RVLLGMKKRGF--GAGRWNGFGGKVQEG-ETIEDGARRELQEE 56

Query: 126 IGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLK 185
            GL    +  V  I     +++     +   +    + + TP   +        L+  + 
Sbjct: 57  SGLTVDALHKVGQIV---FEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQ-IP 112

Query: 186 DENRRVEEKEW----MGEKYLLHYFNYEQKNK 213
            ++   ++  W    + +K    YF ++ ++ 
Sbjct: 113 FKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDT 144

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 25/132 (18%)

Query: 69  AVLVCLFEGDNGEL--------RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATR 120
           A    L      +L         +++  R        G +  PGG  +  D    E   R
Sbjct: 22  ACHALLHAPSQAKLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKR 75

Query: 121 EAKEEIGLDPSLVDVVTV------IEPFLSK-----YLLRVVPVIGILHNRKAFKPTPNP 169
           E +EE+G   + V+V         +     K     Y+  +          +A     + 
Sbjct: 76  ELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHG 135

Query: 170 GEVEEVFDAPLE 181
            EV  +   PL 
Sbjct: 136 LEVMGLIRVPLY 147

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 48.6 bits (115), Expect = 6e-08
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 61  KTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATR 120
           +T  P +      +   + G++ ++  K        +G   +P G  E+G E+  + A R
Sbjct: 5   RTHVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDG-ENPQDAAVR 63

Query: 121 EAKEEIGLDPSLVDVVTVIE-PFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV---- 175
           EA EE GL    V  +      F    L+     +      +   P     E+ E     
Sbjct: 64  EACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTD-EIAEASFVS 122

Query: 176 FDAPLEMFLKDENRRVE 192
            +   +++   + R  +
Sbjct: 123 REDFAQLYAAGQIRMYQ 139

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 64  RPKKAAVLVCL-FEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREA 122
           +P     +V L +  +  +L+V+L +R           +LPGG      E   ++  RE 
Sbjct: 35  KPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRN-ESTEDSVLRET 91

Query: 123 KEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPG-EVEEVFDAPLE 181
           KEE G+  S  ++  +          R   V+ + +     +     G + +EV    LE
Sbjct: 92  KEETGVVISQENIEQLHSFSRPDRDPR-GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLE 150

Query: 182 MFLKDENRRVEEKEW 196
              +      E+ E 
Sbjct: 151 RHGQHITLSHEDVEI 165

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 65  PKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKE 124
            K+AA L    E +   L V         S H     +PGG  E  +E+    A RE  E
Sbjct: 11  KKRAACLCFRSESEEEVLLV-------SSSRHPDRWIVPGGGMEP-EEEPSVAAVREVCE 62

Query: 125 EIGLDPSLVDVVTVIEPFLSKYLLRVVPV 153
           E G+  +L  +V + E    K+   V  +
Sbjct: 63  EAGVKGTLGRLVGIFENQERKHRTYVYVL 91

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 16/140 (11%)

Query: 61  KTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATR 120
            T++ + AA ++        E   ++  +A      +G   LPGG+ E   E   E   R
Sbjct: 12  LTYQTRYAAYIIVS----KPENNTMVLVQA-----PNGAYFLPGGEIEGT-ETKEEAIHR 61

Query: 121 EAKEEIGLDPSLVDVVTVIE--PFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV--- 175
           E  EE+G+   +   +   +   + +                   + +        +   
Sbjct: 62  EVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWV 121

Query: 176 -FDAPLEMFLKDENRRVEEK 194
             +  + +  +  +R   EK
Sbjct: 122 APEEAVRLLKRGSHRWAVEK 141

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           A    LF       ++++T+RA       G  +       +  E + +   R  + E+G+
Sbjct: 4   AFSSWLFNAKG---QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 60

Query: 129 DPSLVDVVTVIEPFLSKYL--LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD 186
           + +  + +     + +     +    V  +   R       N  EV +     L   L  
Sbjct: 61  EITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHG 120

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 28/151 (18%)

Query: 72  VCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS 131
           +CL E    + RV++  RA   +  SG  + PGG   E DE   E+  RE  EE GL   
Sbjct: 12  ICLIEDLETQ-RVVMQYRAPENNRWSG-YAFPGGHV-ENDEAFAESVIREIYEETGLTIQ 68

Query: 132 LVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV---------------- 175
              +V +    L      +V    I +    F  T    E  EV                
Sbjct: 69  NPQLVGIKNWPLDTGGRYIV----ICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYD 124

Query: 176 FDAPLEMFLKDENR-----RVEEKEWMGEKY 201
               +EM    +       R  E +W  + +
Sbjct: 125 MLPLMEMMEAPDKSEFFYPRRTEDDWEKKIF 155

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           A  + + +G     ++++ +R        G +    G   + DE   E+A REA+EE+G+
Sbjct: 32  ATYIVVHDGMG---KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 88

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLE 181
                              +       + H            EV EV     E
Sbjct: 89  AGVPFAEHGQFYFEDKNCRVWGALFSCVSHG----PFALQEDEVSEVCWLTPE 137

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 83  RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPS-LVDVVTVIEP 141
           + +L K        S     P GK ++  E D + A RE  EE G D S  ++    I+ 
Sbjct: 16  QCVLVKGWK----ASSGWGFPKGKIDKD-ESDVDCAIREVYEETGFDCSSRINPNEFIDM 70

Query: 142 FLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFD-APLEMFLKDENRRVEEKEWMGEK 200
            +    +R+  + GI  + +    T       E  +   L  F K++ + ++ K +M   
Sbjct: 71  TIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIP 130

Query: 201 YLLHYFNYEQKNK 213
           +L     + +K  
Sbjct: 131 FLAPLKKWIKKRN 143

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 22/123 (17%)

Query: 68  AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG 127
           + VLV     +NG  +V+L K         G    PGG  E   E   E   RE +EE G
Sbjct: 5   SGVLV-----ENG--KVLLVKHK-----RLGVYIYPGGHVEHN-ETPIEAVKREFEEETG 51

Query: 128 LDPSLVDVVTVIE---------PFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDA 178
           +    +     I          P +    +   P    +H    +      G+++     
Sbjct: 52  IVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWI 111

Query: 179 PLE 181
            + 
Sbjct: 112 DVR 114

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
            +   +F  + GE+ ++L KR        GE SL GG  ++ DE   + A R   E  GL
Sbjct: 12  GIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQK-DESVDDAAKRVLAELTGL 68

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLE 181
           +   ++ V      + +     V  I         +      +    +   + 
Sbjct: 69  ENVYMEQVGAFG-AIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNIN 120

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 19/154 (12%), Positives = 44/154 (28%), Gaps = 18/154 (11%)

Query: 64  RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAK 123
           +P      V   +      + +L +   R    + +++ P G  E G E   +  +RE  
Sbjct: 1   KPNVTVAAVIEQDD-----KYLLVEEIPR--GTAIKLNQPAGHLEPG-ESIIQACSREVL 52

Query: 124 EEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMF 183
           EE G       +  +     +      +                    +       ++  
Sbjct: 53  EETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEI 112

Query: 184 LKDEN-------RRVEEKEWMGEKY---LLHYFN 207
              +         +  E    G++Y   +L Y++
Sbjct: 113 RAKQAMHRTPLVMQCIEDYHAGKRYPLDILQYYD 146

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 48  GSQESASPTV-RYAKTFRPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGK 106
           G   +A P + R+ +      +   +         L+ +  KR        GE ++PGG 
Sbjct: 108 GPNHAADPIITRWKRD----SSGNKIMHPVSGKHILQFVAIKRK-----DCGEWAIPGGM 158

Query: 107 AEEGDEDDGETATREAKEEIGLDPSLVDVVTVI 139
            + G E    T  RE  EE              
Sbjct: 159 VDPG-EKISATLKREFGEEALNSLQKTSAEKRE 190

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 65  PKKAAVLVC-----LFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETAT 119
             +A  L+      + + DN  +  +L +     S      + P G  E G EDD ETA 
Sbjct: 7   ALRACGLIIFRRCLIPKVDNNAIEFLLLQA----SDGIHHWTPPKGHVEPG-EDDLETAL 61

Query: 120 REAKEEIGLDPSLVDVVTVI---EPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEV- 175
           R  +EE G++   + ++        ++++   + V            +   +  E +   
Sbjct: 62  RATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYR 120

Query: 176 ---FDAPLEMFLKDENRRVEEK 194
               +   ++    E +   ++
Sbjct: 121 WLGLEEACQLAQFKEMKAALQE 142

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 79  NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV 138
           N +  V+L +         G    P G  E G E   E A RE  EE G+   ++  +  
Sbjct: 11  NAKREVLLLRD------RMGFWVFPKGHPEPG-ESLEEAAVREVWEETGVRAEVLLPLYP 63

Query: 139 IEPFLSKYLLRVV 151
                 K + R V
Sbjct: 64  TRYVNPKGVEREV 76

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
            V   L        ++ + +R+   S     + +  G A +  E   E   REA+EE+ +
Sbjct: 30  VVNAFLRNSQG---QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 86

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLE 181
           +   +    +      +  L     +  L  R    P  NP ++        E
Sbjct: 87  EIDALSWRPLASFSPFQTTLSSFMCVYEL--RSDATPIFNPNDISGGEWLTPE 137

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 20/150 (13%)

Query: 69  AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGL 128
           ++   +          +L KR +R     G   +PGG+ ++  E       R    E+GL
Sbjct: 20  SLDFIVENSRG---EFLLGKRTNR--PAQGYWFVPGGRVQKD-ETLEAAFERLTMAELGL 73

Query: 129 DPSLVDVVTVIEPFLSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPL-EMFLKDE 187
              +                +   V    ++            V   F   + E  L   
Sbjct: 74  RLPITA-------------GQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP 120

Query: 188 NRRVEEKEWMGEKYLLHYFNYEQKNKKYLI 217
           + + ++  W+    LL   N    ++ Y +
Sbjct: 121 DEQHDDYRWLTSDALLASDNVHANSRAYFL 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	100.0
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.8
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.79
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.79
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.78
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.76
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.76
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.74
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.74
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.73
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.71
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.7
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.7
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.69
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.69
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.68
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.67
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.67
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.65
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.64
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.62
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.61
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.59
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.58
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.58
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.55
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.37
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.35
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.34
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.34

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.1e-38  Score=268.25  Aligned_cols=158  Identities=29%  Similarity=0.458  Sum_probs=129.7

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      ..|+|||+|+++.+  ++.+|||+||+.+++.|+|+|+||||++|.+| ++.+||+||++|||||++..+++++.++.+.
T Consensus        29 ~~r~aaVlv~~~~~--~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E-~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~  105 (187)
T d1nqza_          29 HYRRAAVLVALTRE--ADPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVF  105 (187)
T ss_dssp             -CEEEEEEEEEESS--SSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCEE
T ss_pred             CCCccEEEEEEEEC--CCCEEEEEEcCCCCCCCCCeEeCCccccccCC-chhHHHHHHHHHhhccccceeEEeeccccee
Confidence            45789999999863  45699999999999999999999999999999 9999999999999999999999999999888


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccchhhHHHHhhcccceeeeeeeeeccCceEEeeehhHh
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDENRRVEEKEWMGEKYLLHYFNYEQKNKKYLIWGITAA  223 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~  223 (259)
                      +.+++.|+||++.+.... .....+++||++++|+|+++|.+..+.......+.|..+.+++|.|    +++.|||+||+
T Consensus       106 ~~~~~~V~p~v~~l~~~~-~~~~~~~~EV~~v~~vpl~~L~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~IWG~TA~  180 (187)
T d1nqza_         106 TPVGFHVTPVLGRIAPEA-LDTLRVTPEVAQIITPTLAELRAVPLVRERRTLPDGTEVPLYRYPW----RGLDIWGMTAR  180 (187)
T ss_dssp             ETTTEEEEEEEEEECGGG-GGGCCCCTTEEEEECCBHHHHHHSCCEEEEEECTTSCEEEEEEEEE----TTEEEEHHHHH
T ss_pred             eccccEEEEEEEEECCcc-ccccccCCcceEEEeccHHHHhcCcccceEEEccCCcEEEEEEEEE----CCcEEhHHHHH
Confidence            888899999999886532 2334567899999999999999877655444456677778888887    46899999999


Q ss_pred             hhhhhc
Q 025031          224 ILVRAA  229 (259)
Q Consensus       224 il~~~~  229 (259)
                      ||.+++
T Consensus       181 IL~~~l  186 (187)
T d1nqza_         181 VLHDLL  186 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999986

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4e-20  Score=150.08  Aligned_cols=115  Identities=17%  Similarity=0.110  Sum_probs=86.8

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF  142 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~  142 (259)
                      ...+.||.|++++ .+|  +|||++|+..+..+||.|.+| ||++++|| |+++||+||++|||||....+..++.+...
T Consensus        27 ~~~h~~v~v~v~~-~~g--~vLl~rR~~~~~~~pg~w~~~~GG~ie~gE-s~~~aa~REl~EE~Gi~~~~~~~~~~~~~~  102 (161)
T d2fkba1          27 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE  102 (161)
T ss_dssp             TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred             CCcEeEEEEEEEe-CCC--CEEEEEecCccccccccccccccccccccC-cHHHHHHHHHHHHhCCccceeEEEEEEEee
Confidence            4456678887776 456  899999999888999999886 99999999 999999999999999988777777664322


Q ss_pred             HhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          143 LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .......++.|.+..    ...+.++++|++++.|++++++.+.
T Consensus       103 ~~~~~~~~~~~~~~~----~~~~~~~~~Ev~~~~w~~~~el~~~  142 (161)
T d2fkba1         103 DKNCRVWGALFSCVS----HGPFALQEDEVSEVCWLTPEEITAR  142 (161)
T ss_dssp             ETTEEEEEEEEEEEC----CCCCCCCTTTEEEEEEECHHHHHTT
T ss_pred             cCCcEEEEEEEEEEE----CCCCcCChhHeeEEEEEeHHHHhhh
Confidence            222222233333332    2244678899999999999998764

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.6e-20  Score=143.27  Aligned_cols=100  Identities=21%  Similarity=0.261  Sum_probs=76.5

Q ss_pred             CCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeEeeEe
Q 025031           78 DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPVIGIL  157 (259)
Q Consensus        78 ~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~v~~~  157 (259)
                      .+|  +|||++|+.. ..++|.|+||||++|.|| |+.+||.||++||||+.+....+++...+.+......++.|.+..
T Consensus        14 ~~~--~vLl~~R~~~-~~~~g~W~~PgG~ve~gE-s~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (129)
T d1puna_          14 ENN--EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVER   89 (129)
T ss_dssp             TTS--CEEEBCCCSS-CSCTTCCBCSCCSCTTTS-CTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEECCC
T ss_pred             CCC--EEEEEEecCC-CCCCCcEECCcceecCCC-chhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEEEee
Confidence            445  8999999876 568999999999999999 999999999999999999988887776654444443444443332


Q ss_pred             eccccCCCCCCccchhhhcccchhhhccc
Q 025031          158 HNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       158 ~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .   ..  .+...|++++.|++++++.+.
T Consensus        90 ~---~~--~~~~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          90 W---EG--EPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             C---SS--CCCTTSSSCCEEECGGGCCTT
T ss_pred             c---cC--cCCCCccceEEEEEHHHcccC
Confidence            1   12  234578899999999998653

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.3e-20  Score=149.06  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=81.2

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeec-CCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH--hh
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSL-PGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL--SK  145 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsf-PGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~--~~  145 (259)
                      ||.|.|++ ++|  +|||+||+..+..+||.|.+ |||++|+|| |+.+||+||+.|||||+...+..+.....+.  ..
T Consensus         4 a~~v~i~n-~~g--~vLl~kRs~~k~~~pg~w~~~pgG~ve~gE-t~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~   79 (153)
T d1hzta_           4 AFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRYRATDP   79 (153)
T ss_dssp             CEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECT
T ss_pred             EEEEEEEE-CCC--EEEEEEeCCCCCCCCCceecccCceeecCC-cHHHHHHHHHHHHcCceeecccceecccccccccc
Confidence            66676777 456  79999999888899999988 999999999 9999999999999999988776554321111  11


Q ss_pred             hcc----eeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLL----RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~----~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .+.    .++.|.+.  .  ...+.+|++|++++.|++++++.+.
T Consensus        80 ~~~~~~~~~~~~~~~--~--~~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          80 SGIVENEVCPVFAAR--T--TSALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             TSCEEEEECCEEEEE--B--CSCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ccccceeEEEEEEEe--e--CCCccCChhheeEEEEeeHHHHHHH
Confidence            111    11222222  2  2345678899999999999999764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.78  E-value=9.5e-20  Score=147.87  Aligned_cols=117  Identities=18%  Similarity=0.200  Sum_probs=80.4

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecC-CCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhh
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLP-GGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPF  142 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfP-GG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~  142 (259)
                      ...+.+|.+++++ .+|  +|||++|+..+..+||.|++| ||+++.|| |+.+||+||++|||||++.....+......
T Consensus        25 ~~~~~~v~~~v~~-~~g--~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gE-s~~eaa~REl~EE~Gl~~~~~~~~~~~~~~  100 (162)
T d2o5fa1          25 WERVRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFS  100 (162)
T ss_dssp             GGGSEEEEEEEEC-TTS--CEEEEEC-------CCSBCCSEEEECBTTC-CHHHHHHHHHHHHHCCCGGGSEEEEEEEEC
T ss_pred             CCeEEEEEEEEEc-CCC--CEEEEEeccCccccccccccccCCcccCCC-ChhhhhhhhhhheeCcceeeEEEEEEEEec
Confidence            3355577777776 456  799999999888999999887 99999999 999999999999999998877655443332


Q ss_pred             HhhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          143 LSKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       143 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ........+.+++.+...  ..+.++++|++++.|+++++++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Ev~~~~W~~~eel~~~  142 (162)
T d2o5fa1         101 PFQTTLSSFMCVYELRSD--ATPIFNPNDISGGEWLTPEHLLAR  142 (162)
T ss_dssp             TTTSSCSSEEEEEEEECS--SCCCCCTTTCSEEEEECHHHHHHH
T ss_pred             cccccceEEEEEEEEecC--CCccCChhHeeEEEEeeHHHHHHH
Confidence            222222223333333332  345678899999999999999764

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.76  E-value=3.1e-19  Score=143.25  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             cceeEEEEEeecCCCceEEEEeeccccc--ccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRL--STHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~--~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      +..|+.+++++ ++|  +|||++|+...  ...+|.|+||||++|+|| |+.+||.||++|||||.+..+.+++.+....
T Consensus        11 ~~~a~~~vi~~-~~g--~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~   86 (158)
T d1sjya_          11 ELRAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRF   86 (158)
T ss_dssp             CEEEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             ceeEEEEEEEe-CCC--EEEEEEEecCCCCCCCCCcEECCceecCCCC-CHHHHHHHHHHHHhCccceeeEEEEEEEEEC
Confidence            33455555665 345  79999998653  346789999999999999 9999999999999999999888887764332


Q ss_pred             h-hhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 S-KYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~-~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      . ......+.|++.........+ .+.+|+.++.|++++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~l  129 (158)
T d1sjya_          87 PDGVLILRHVWLAEPEPGQTLAP-AFTDEIAEASFVSREDFAQL  129 (158)
T ss_dssp             TTSCEEEEEEEEEEECSSCCCCC-CCCSSEEEEEEECHHHHHHH
T ss_pred             CCCCEEEEEEEEEEEcCCcccCC-CCCcceEEEEEEEHHHHhhh
Confidence            2 222233444444443222222 23479999999999998753

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.76  E-value=3.2e-19  Score=142.96  Aligned_cols=114  Identities=16%  Similarity=0.176  Sum_probs=83.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      ..+|-++++..++++++|||++|+..  +++|+|+||||++|.|| |+.+||+||++|||||++..+..++.+.......
T Consensus        10 ~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lPGG~ie~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (147)
T d2fb1a2          10 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDP   86 (147)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSS
T ss_pred             ceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCcEeeecCCC-CHHHHHHHHHHHHhCCcccceeeeeEecCCcccC
Confidence            34554444433456679999999865  67899999999999999 9999999999999999999988888775443221


Q ss_pred             c--ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 L--LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      +  .....|++.+...   ......+|.+++.|++++++.+.
T Consensus        87 ~~~~v~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~~lp~l  125 (147)
T d2fb1a2          87 GERVVSIAYYALININ---EYDRELVQKHNAYWVNINELPAL  125 (147)
T ss_dssp             SSCEEEEEEEEECCTT---SSCHHHHHHTTEEEEETTSCCCB
T ss_pred             CCceEEEEEEEEecCC---cccCCCcchhheEEecHHhchhc
Confidence            2  2223455554432   22335578899999999998653

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=5.3e-19  Score=139.94  Aligned_cols=111  Identities=12%  Similarity=0.064  Sum_probs=79.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      ++|.+++.+  +|  ++||++|...  ...|.|+||||++|.|| |+.+||+||++|||||.......++.........+
T Consensus         4 v~va~ii~~--~~--k~Llv~r~~~--~~~~~w~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   76 (146)
T d2b0va1           4 VTVAAVIEQ--DD--KYLLVEEIPR--GTAIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG   76 (146)
T ss_dssp             EEEEEECEE--TT--EEEEEEECSS--SSCCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT
T ss_pred             EEEEEEEEe--CC--EEEEEEEecC--CCCCEEECCeeeECCCC-CHHHHHHHHHHHhheeecccceEEEEEEEecCCCC
Confidence            445444433  35  8999999876  46789999999999999 99999999999999999888777776554443332


Q ss_pred             c--eeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          148 L--RVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       148 ~--~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      .  ..+.|++.+....  ......+|+.++.|++++++.+..
T Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~~  116 (146)
T d2b0va1          77 TTYLRFTFSGQVVSFD--PDRKLDTGIVRAAWFSIDEIRAKQ  116 (146)
T ss_dssp             EEEEEEEEEEEEEEEC--TTSCCCTTEEEEEEEEHHHHHHTG
T ss_pred             eEEEEEEEEEEeecCC--CCCCCCcceeEEEEeeHHHHhhCc
Confidence            2  2333444443322  223445799999999999997643

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=8.6e-19  Score=137.49  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=80.5

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhc
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYL  147 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~  147 (259)
                      .||++++.++  +  ++||++|...   .+|.|+||||++|+|| |+++||.||++||||+.+.....++......  ..
T Consensus         4 paViv~i~~~--~--~vLL~~~~~~---~~g~w~lpGG~ve~GE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~--~~   73 (131)
T d1vk6a2           4 PCIIVAIRRD--D--SILLAQHTRH---RNGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVTSQPWPF--PQ   73 (131)
T ss_dssp             EEEEEEEEET--T--EEEEEEETTT---CSSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEET--TE
T ss_pred             cEEEEEEEeC--C--EEEEEEeccC---CCCCEecccCCCcCCC-cHHHHHHHHHHHHhCCcccceeEEEEeccCc--Cc
Confidence            3676666653  3  8999988754   3589999999999999 9999999999999999998888777644322  22


Q ss_pred             ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...+.|++.+..   ..+.++++|+.++.|++++++...
T Consensus        74 ~~~~~f~~~~~~---~~~~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          74 SLMTAFMAEYDS---GDIVIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEEEEEEEEEE---CCCCCCTTTEEEEEEEETTSCCSC
T ss_pred             eEEEEEEEEEcC---CcccCCCccEEEEEEEcHHHHhhC
Confidence            334455555543   245678899999999999998654

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-18  Score=139.24  Aligned_cols=111  Identities=21%  Similarity=0.123  Sum_probs=77.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      +.++++++..  +|  +|||++|...  .+.|.|++|||++|.|| |+.+||+||++|||||++.....++.+.......
T Consensus         5 r~~~~v~i~~--~~--~vLL~~r~~~--~~~g~W~lPGG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   77 (156)
T d1irya_           5 RLYTLVLVLQ--PQ--RVLLGMKKRG--FGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFVGE   77 (156)
T ss_dssp             EEEEEECEEC--SS--EEEEEEESSS--SSBTCEECBCCBCCTTC-CHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTC
T ss_pred             EEEEEEEEEE--CC--EEEEEEecCC--CCCCEEECcEeEecCCC-CHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCC
Confidence            4455555554  34  8999999764  67899999999999999 9999999999999999998888887765443333


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ......+++.... ...  .+...|..++.|++++++....
T Consensus        78 ~~~~~~~~~~~~~-~~~--~~~~~ee~~~~W~~~~~l~~~~  115 (156)
T d1irya_          78 PELMDVHVFCTDS-IQG--TPVESDEMRPCWFQLDQIPFKD  115 (156)
T ss_dssp             SCEEEEEEECCCC-BCS--CCCCCSSEEEEEEETTCCCSTT
T ss_pred             CEEEEEEEEEEEe-ecC--cccCCchhheEEeEHHHCCcCC
Confidence            2222223322222 122  2333444667999999997653

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=5.6e-18  Score=136.11  Aligned_cols=104  Identities=21%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             EeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-hcceeee
Q 025031           74 LFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-YLLRVVP  152 (259)
Q Consensus        74 l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-~~~~v~~  152 (259)
                      +++.+++  +|||++|+... .+.|.|+||||++|+|| |+.+||.||++|||||.+....+++........ ....+..
T Consensus        15 i~~~~~~--~lLl~~R~~~~-~~~~~w~~PGG~ve~gE-s~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   90 (155)
T d2b06a1          15 IEDLETQ--RVVMQYRAPEN-NRWSGYAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVIC   90 (155)
T ss_dssp             EEETTTT--EEEEEEEC------CCEEECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCC--EEEEEEECCCC-CCCCcEECceeEEcCCC-CHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEEEEE
Confidence            3443444  89999998774 34466999999999999 999999999999999999888877765433322 2222223


Q ss_pred             EeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          153 VIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       153 ~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      |.+...   ..  .+...|..++.|++++++.+.
T Consensus        91 ~~~~~~---~~--~~~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          91 YKATEF---SG--TLQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             EEECEE---EE--CCCCBTTBEEEEEEGGGGGGS
T ss_pred             EEEEec---CC--ccCCCchheEEEEEHHHhccC
Confidence            333211   11  244578899999999999764

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.70  E-value=7.1e-18  Score=131.62  Aligned_cols=110  Identities=23%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH---h
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL---S  144 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~---~  144 (259)
                      +|-+|++.. .+++.++||++|+..    +|.|+||||++|.|| |+.+||+||++||||+++..+..+.......   .
T Consensus         4 aag~vv~~~-~~~~~~~Ll~~r~~~----~g~W~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   77 (137)
T d1ktga_           4 AAGLVIYRK-LAGKIEFLLLQASYP----PHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYEA   77 (137)
T ss_dssp             EEEEEEEEE-ETTEEEEEEEEESST----TCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEE-cCCCEEEEEEEEcCC----CCcEeCcccccccCC-CHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCC
Confidence            444444443 456678999998754    589999999999999 9999999999999999988777654433221   1


Q ss_pred             h-hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          145 K-YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       145 ~-~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      . ....+..|+......  ....++ +|+.++.|++++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~~-~E~~~~~W~~~~e~~~~  117 (137)
T d1ktga_          78 KGKPKSVKYWLAKLNNP--DDVQLS-HEHQNWKWCELEDAIKI  117 (137)
T ss_dssp             TTEEEEEEEEEEEECSC--CCCCCC-TTEEEEEEECHHHHHHH
T ss_pred             CcceEEEEEEEEEecCC--CCcCCC-cceEEEEEEEHHHHHHh
Confidence            1 112233344443332  233444 68999999999998754

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.3e-18  Score=134.97  Aligned_cols=113  Identities=22%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             CccceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhH
Q 025031           64 RPKKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFL  143 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~  143 (259)
                      ..|+.|.+|++..+.++  .+||.+|..    ++|.|+||||++|+|| |+.+||+||++|||||.+....+++......
T Consensus         9 ~~r~~a~~vv~~~~~~~--~~lL~~~~~----~~~~W~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (135)
T d2fvva1           9 GYKKRAACLCFRSESEE--EVLLVSSSR----HPDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE   81 (135)
T ss_dssp             SCEEEEEEEEESSTTCC--EEEEEECSS----CTTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT
T ss_pred             CCceEEEEEEEEecCCC--EEEEEEEeC----CCCcEECCccccCCCC-CHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Confidence            44555555555443222  666666654    3689999999999999 9999999999999999988887777665444


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ......++.+......  .. .....+|+.++.|++++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~--~~-~~~~~~e~~~~~W~~~~e~~~~  121 (135)
T d2fvva1          82 RKHRTYVYVLIVTEVL--ED-WEDSVNIGRKREWFKIEDAIKV  121 (135)
T ss_dssp             TTEEEEEEEEEEEEEC--SS-CHHHHHHCCCEEEEEHHHHHHH
T ss_pred             CCccEEEEEEEEEeec--CC-CCCCCCceeEEEEEEHHHHHHH
Confidence            3333333333222111  11 1223568889999999998764

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.4e-17  Score=133.88  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=77.2

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcce--eeeeehhhhHh-
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLV--DVVTVIEPFLS-  144 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i--~~l~~l~~~~~-  144 (259)
                      .+|.+++++ .+|  +|||++|+..  +++|.|++|||+++.|| |+.+||+||++|||||.....  ..++....... 
T Consensus        19 ~~v~~vi~~-~~~--~vLL~kR~~~--~~~g~W~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   92 (160)
T d1ryaa_          19 VSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD   92 (160)
T ss_dssp             EEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESS
T ss_pred             EEEEEEEEe-CCC--eEEEEEeCCC--CCCCcEecccccccCCC-cHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccc
Confidence            466666666 455  8999999865  68899999999999999 999999999999999987543  33433322211 


Q ss_pred             ---hhc--ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhcccch
Q 025031          145 ---KYL--LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDEN  188 (259)
Q Consensus       145 ---~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~~  188 (259)
                         ...  .....+++..... ......+.+|+.++.|++++++.+...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~e~~W~~~~el~~~~~  140 (160)
T d1ryaa_          93 NFSGTDFTTHYVVLGFRFRVS-EEELLLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             BTTBSSSCEEEEEEEEEEECC-GGGCCCCSSSEEEEEEECHHHHHHCTT
T ss_pred             cccCCCcceEEEEEEEEEEec-CCCccCCCcceEEEEEEEHHHhhcCcc
Confidence               111  1112222222221 222344568999999999999987554

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=7.2e-18  Score=134.86  Aligned_cols=104  Identities=19%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             EeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcceeeeE
Q 025031           74 LFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLRVVPV  153 (259)
Q Consensus        74 l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~v~~~  153 (259)
                      +++.+.+  +|||+||...    .|.|+||||++|.|| |+.+||+||+.|||||++.............. ....++.|
T Consensus         9 i~~~~~~--kvLLvk~~~~----~~~W~lPgG~ie~gE-s~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~-~~~~~~~~   80 (151)
T d2a6ta2           9 MLDMSMQ--QCVLVKGWKA----SSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFIDMTI-RGQNVRLY   80 (151)
T ss_dssp             EBCSSSS--EEEEEEESST----TCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEE-TTEEEEEE
T ss_pred             EEECCCC--EEEEEEEeCC----CCCEECCcccccCCC-CHHHHHHHHHHHHhCCCceeeeecceEEeecc-cCceEEEE
Confidence            4543334  8999998643    578999999999999 99999999999999998765433322211111 11122223


Q ss_pred             ee-EeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          154 IG-ILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       154 v~-~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ++ .+.....+. ..+.+|++++.|+++++|.+.
T Consensus        81 ~~~~~~~~~~~~-~~~~~Ei~~~~W~~~~el~~~  113 (151)
T d2a6ta2          81 IIPGISLDTRFE-SRTRKEISKIEWHNLMDLPTF  113 (151)
T ss_dssp             EECCCCTTCCCC-------EEEEEEEEGGGSTTC
T ss_pred             EEEEeccCCccc-ccCCCccceEEEEEHHHhhhh
Confidence            32 222222222 234579999999999998764

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.6e-17  Score=128.95  Aligned_cols=103  Identities=18%  Similarity=0.074  Sum_probs=72.7

Q ss_pred             eEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh-hc
Q 025031           69 AVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK-YL  147 (259)
Q Consensus        69 aVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~-~~  147 (259)
                      +|.+++++ .++  +|||++|.      .|.|+||||++|.|| |+.+||.||++|||||.+..+..++........ ..
T Consensus         4 ~agavv~~-~~~--~vLl~~~~------~g~w~~PgG~ve~gE-t~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~   73 (126)
T d1vcda1           4 GAGGVVFN-AKR--EVLLLRDR------MGFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVE   73 (126)
T ss_dssp             EEEEEEEC-TTS--CEEEEECT------TSCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCE
T ss_pred             EEEEEEEE-CCC--EEEEEEcC------CCCEECCccccCCCC-CHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeE
Confidence            44555565 345  78888764      278999999999999 999999999999999998877777654433222 12


Q ss_pred             ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          148 LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       148 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ..++.|++....    .+.++ +|+.++.|++++++.+.
T Consensus        74 ~~~~~~~~~~~~----~~~~~-~e~~~~~W~~~~e~~~~  107 (126)
T d1vcda1          74 REVHWFLMRGEG----APRLE-EGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEEEEEEES----CCCCC-TTCCEEEEECHHHHHHH
T ss_pred             EEEEEEEEEEcC----CCCCC-ccceEEEEEEHHHHhhc
Confidence            234444444332    22333 68889999999998764

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.67  E-value=2.3e-17  Score=138.75  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=74.5

Q ss_pred             eecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCccee--eeeehhhhH-hhhccee-
Q 025031           75 FEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVD--VVTVIEPFL-SKYLLRV-  150 (259)
Q Consensus        75 ~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~--~l~~l~~~~-~~~~~~v-  150 (259)
                      ++.+++.++|||++|+..  ++.|.|+||||++|.|| |+.+||+||++|||||.+....  .++.+.... ...+..+ 
T Consensus        47 ~~~~~~~l~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~eaa~REl~EEtGl~~~~~~l~~~~~~~~~~r~~~~~~i~  123 (202)
T d2fmla2          47 YNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVT  123 (202)
T ss_dssp             EETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEE
T ss_pred             EecCCCeeEEEEEEecCC--CCCCcEECCEEeecCCC-CHHHHhhhhhHhhcCeeeecceeeeeeecccCCccccceEEE
Confidence            344456789999999865  78899999999999999 9999999999999999876543  344332211 1122223 


Q ss_pred             eeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          151 VPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       151 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      ..|++.+...   . ....+|+.++.|+|++++....
T Consensus       124 ~~~~~~~~~~---~-~~~~~e~~~~~Wf~ld~l~~~~  156 (202)
T d2fmla2         124 VSYLAFIGEE---P-LIAGDDAKEVHWFNLERHGQHI  156 (202)
T ss_dssp             EEEEEECCCC---C-CCCCTTEEEEEEEEEEEETTEE
T ss_pred             EEEEEEeCCC---C-cCCCcceeeEEEEeHHHCcchh
Confidence            2344443321   2 2345799999999999987643

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.67  E-value=5.8e-17  Score=131.52  Aligned_cols=112  Identities=18%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeee------hh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTV------IE  140 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~------l~  140 (259)
                      |.+|.+++++ ++|  +|||++|+.+    +|.|.||||++|.|| |+++||+||++|||||....+.....      ..
T Consensus        14 R~~Vg~vI~n-~~~--~vLL~kR~~~----~g~W~~PgG~ve~gE-t~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   85 (165)
T d1jkna_          14 RRNVGICLMN-NDK--KIFAASRLDI----PDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP   85 (165)
T ss_dssp             EEEEEEEEEC-TTS--CEEEEEESSS----TTCEECCEECCCTTC-CHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECC
T ss_pred             cccEEEEEEe-CCC--EEEEEEEcCC----CCcccCccceEcCCC-ChhHHHHHHHHHhhcccccccccccccccccccc
Confidence            4577777776 455  8999999854    689999999999999 99999999999999999876543221      11


Q ss_pred             hh-Hh----h-----hcceeeeEeeEeecc-ccCCCCC---Cccchhhhcccchhhhccc
Q 025031          141 PF-LS----K-----YLLRVVPVIGILHNR-KAFKPTP---NPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       141 ~~-~~----~-----~~~~v~~~v~~~~~~-~~~~~~~---~~~Ev~~v~wvpl~ell~~  186 (259)
                      .. ..    .     .....+.|+..+... .......   ...|.+++.|++++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T d1jkna_          86 PKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             HHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHH
T ss_pred             ceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHh
Confidence            10 00    0     011223334333321 1111111   2348899999999999864

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=3.6e-17  Score=132.44  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=73.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      ..||.|++++  +|  +|||+++.+. ....+.|+||||++|+|| ++.+||+||+.||||+... +..++.+.......
T Consensus        24 ~~aV~vl~~~--~~--~vlLv~q~R~-~~~~~~~elP~G~ve~gE-~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~   96 (158)
T d1v8ya_          24 KPAVAVIALR--EG--RMLFVRQMRP-AVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFT   96 (158)
T ss_dssp             CCEEEEEEEE--TT--EEEEEECCBT-TTTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTB
T ss_pred             CCEEEEEEEE--CC--EEEEEEeeec-CCCCceEecchhhccccC-CHHHHHHHHHHhhcCCcce-eeeecceecCCCcc
Confidence            3466666555  34  7999886543 344568999999999999 9999999999999999764 45555543333333


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus        97 ~~~~~~f~a~~~~~--~~~~~d~~E~~ev~w~~~~e~~~~  134 (158)
T d1v8ya_          97 DEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALER  134 (158)
T ss_dssp             CCEEEEEEEEEEEE--CC--------CEEEEECHHHHHHH
T ss_pred             eEEEEEEEEccccc--cccCCCCCeeEEEEEEEHHHHHHH
Confidence            44566666654332  234567789999999999998763

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.3e-17  Score=133.93  Aligned_cols=112  Identities=20%  Similarity=0.200  Sum_probs=82.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKY  146 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~  146 (259)
                      ..+|+|+...  ++  +|||+++.+. ......|+||||++|+|| ++++||+||+.||||+.+..+..++.+.......
T Consensus        48 ~~~v~vi~~~--~~--~vlLvrq~R~-~~~~~~~elP~G~ie~gE-~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~  121 (186)
T d1vhza_          48 REAVMIVPIV--DD--HLILIREYAV-GTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF  121 (186)
T ss_dssp             CCEEEEEEEE--TT--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTC
T ss_pred             CcEEEEEEcc--CC--EEEEEEeeec-CCCceEeecccccCCCCc-CHHHHHHHHHHHHhccccccceecceeecccccc
Confidence            3455554443  24  7888865433 455678999999999999 9999999999999999999999888875444444


Q ss_pred             cceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 LLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ...++.|++.....  ....++.+|+.++.|+|++++.+.
T Consensus       122 ~~~~~~~~a~~~~~--~~~~~de~E~~~~~~~~~~e~~~~  159 (186)
T d1vhza_         122 SSKMNIVVAQDLYP--ESLEGDEPEPLPQVRWPLAHMMDL  159 (186)
T ss_dssp             CCEEEEEEEEEEEE--CCCCCCCSSCCCEEEEEGGGGGGG
T ss_pred             ceEEEEEEEEeccc--ccCCCCCCcEEEEEEEeHHHHHHH
Confidence            45566666653322  233567789999999999998764

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.1e-16  Score=134.72  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=78.5

Q ss_pred             ceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCC-CCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhh
Q 025031           67 KAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAE-EGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSK  145 (259)
Q Consensus        67 ~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve-~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~  145 (259)
                      .-+|.|+.+++ ++  +|||+++.+. ......|+||||++| +|| ++++||+||+.||||+....+..++.+....+.
T Consensus        38 ~~~V~vl~~~~-~~--~ilLvrq~R~-~~~~~~welPaG~ie~~gE-~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~  112 (202)
T d1mqea_          38 FGAVAIVAMDD-NG--NIPMVYQYRH-TYGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPGF  112 (202)
T ss_dssp             CCEEEEEECCT-TS--EEEEEEEEET-TTTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTT
T ss_pred             CCeEEEEEECC-CC--EEEEEEeccc-ccCceEEeccccccccCCC-CHHHHHHHHHhhccccccccceEeeeeeccCcc
Confidence            34666655553 45  8999886443 234557999999999 799 999999999999999999999999987665555


Q ss_pred             hcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          146 YLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       146 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ....++.|++............+.+|..++.|+|++++.+.
T Consensus       113 ~~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~  153 (202)
T d1mqea_         113 SDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  153 (202)
T ss_dssp             BCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             CCcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHH
Confidence            55566777766433211111223345668999999999764

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.61  E-value=1.6e-16  Score=125.62  Aligned_cols=106  Identities=15%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-hh
Q 025031           68 AAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-KY  146 (259)
Q Consensus        68 aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~~  146 (259)
                      .+|.+++++.++.  .+|++++. .     |.|+||||++|+|| |+.+||+||+.|||||+......++.+..... ..
T Consensus        18 ~~~~~vi~~~~~~--~lll~~~~-~-----~~w~lPgG~ie~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   88 (147)
T d2azwa1          18 YAAYIIVSKPENN--TMVLVQAP-N-----GAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH   88 (147)
T ss_dssp             CEEEEECEEGGGT--EEEEEECT-T-----SCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred             CeEEEEEEECCCC--EEEEEEcC-C-----CeEECcEeEeCCCC-CHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeecc
Confidence            4444545654333  56666543 2     78999999999999 99999999999999999887777766543321 11


Q ss_pred             c-----ceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          147 L-----LRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       147 ~-----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .     ...+.|.+....   .. ....+|+.++.|++++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~---~~-~~~~~e~~~~~W~~~~e~~~~  129 (147)
T d2azwa1          89 RQTAYYNPGYFYVANTWR---QL-SEPLERTNTLHWVAPEEAVRL  129 (147)
T ss_dssp             TTEEEEEEEEEEEEEEEE---EC-SSCC-CCSEEEEECHHHHHHH
T ss_pred             CCceEEEEEEEEEEEecc---cc-CCCCccceEEEEEEHHHHHHH
Confidence            1     112222232221   12 223468889999999998654

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.59  E-value=9.8e-17  Score=126.86  Aligned_cols=99  Identities=18%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             EEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh-hhcceeeeEeeEeeccc
Q 025031           83 RVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS-KYLLRVVPVIGILHNRK  161 (259)
Q Consensus        83 ~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~-~~~~~v~~~v~~~~~~~  161 (259)
                      +|||++|..     .|.|+||||++|.|| ++.+||.||++|||||++.....+........ ........+........
T Consensus        13 kvLl~~r~~-----~~~w~lPgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (152)
T d1k2ea_          13 KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPE   86 (152)
T ss_dssp             EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEECSS
T ss_pred             EEEEEEEcC-----CCeEECCeeEEeCCc-cHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEEEEEEecCC
Confidence            899999864     388999999999999 99999999999999998876665544332211 11111111111111000


Q ss_pred             --------cCCCCCCccchhhhcccchhhhcccc
Q 025031          162 --------AFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       162 --------~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                              .+...++.+|+.++.|+|++++.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  120 (152)
T d1k2ea_          87 ETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIE  120 (152)
T ss_dssp             CEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSC
T ss_pred             CceEEEEEeEeeecCCCCcceEEEeEHHHHhhCC
Confidence                    00112345799999999999987643

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.58  E-value=5.5e-16  Score=120.57  Aligned_cols=105  Identities=21%  Similarity=0.257  Sum_probs=75.7

Q ss_pred             EEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHhhhcce
Q 025031           70 VLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLSKYLLR  149 (259)
Q Consensus        70 Vli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~~~~~~  149 (259)
                      |.+.++.+++|  ++||+||... +.++|.|+||||++|.++ + .+++.||++||+|+++...+.++.+.+.++.....
T Consensus         6 v~~~vi~~~~g--~iLl~kR~~~-~~~~GlWefP~g~~e~~~-~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~   80 (127)
T d1rrqa2           6 LAVAVLADDEG--RVLIRKRDST-GLLANLWEFPSCETDGAD-G-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQ   80 (127)
T ss_dssp             EEEEEEEESSS--EEEEEECCSS-STTTTCEECCEEECTTTC-C-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEE
T ss_pred             EEEEEEEECCC--EEEEEECCCC-CCCCCceecccccccCCC-C-HHHHHHHhhhhcceEEEeccccccceEecCCeEEE
Confidence            33333333556  8999999876 689999999999999766 5 78999999999999988888888877777776666


Q ss_pred             eeeEeeEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          150 VVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       150 v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      +++|.+.....        ..+.+++.|++++++.+-.
T Consensus        81 ~~~~~~~~~~~--------~~~~~~~~Wv~~~el~~~~  110 (127)
T d1rrqa2          81 LTVFPGRLVHG--------GPVEEPYRLAPEDELKAYA  110 (127)
T ss_dssp             EEEEEEEEECC--------SCCCTTEEEEEGGGGGGSC
T ss_pred             EEEEEEEECCC--------CccccceEEeeHHHHhHCC
Confidence            77777665432        1234678899999997643

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=121.21  Aligned_cols=102  Identities=20%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             CCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhhhHh----hhcceeeeEe
Q 025031           79 NGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEPFLS----KYLLRVVPVI  154 (259)
Q Consensus        79 ~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~~~~----~~~~~v~~~v  154 (259)
                      ++..++||++|+..    .+.|.||||+++.|| |+.+||.||++||||+....+.++........    ........|+
T Consensus        26 ~~~~~~LL~~~~~~----~~~W~lPgG~ie~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (153)
T d1xsba_          26 NNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL  100 (153)
T ss_dssp             STTEEEEEEEESST----TCCEECCEEECCSSS-CHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEEESSSCEEEEEEEE
T ss_pred             CCCCEEEEEEecCC----CCcEECCeeecCCCC-CHHHHHHHHHHHHhCCccceeeeeccceeeecccccCceeEEEEEE
Confidence            45679999998875    357999999999999 99999999999999999988877665432221    1112223333


Q ss_pred             eEeeccccCCCCCCccchhhhcccchhhhcccc
Q 025031          155 GILHNRKAFKPTPNPGEVEEVFDAPLEMFLKDE  187 (259)
Q Consensus       155 ~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~~  187 (259)
                      +..... .....+ .+|+.++.|++++++.+..
T Consensus       101 ~~~~~~-~~~~~~-~~E~~~~~W~~~~e~~~~~  131 (153)
T d1xsba_         101 AEVKDY-DVEIRL-SHEHQAYRWLGLEEACQLA  131 (153)
T ss_dssp             EEESCT-TCCCCC-CTTEEEEEEECHHHHHHHT
T ss_pred             EEEeec-ccccCC-CcceeEEEEEEHHHHHHhc
Confidence            433322 222233 4789999999999987653

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3e-15  Score=126.31  Aligned_cols=118  Identities=19%  Similarity=0.128  Sum_probs=81.6

Q ss_pred             cceeEEEEEeecCCCceEEEEeeccccc--c--cccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehhh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRL--S--THSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIEP  141 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~--~--~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~~  141 (259)
                      +..+|.|+++..+.+  +|+|++.-+..  +  ..+-.|+||+|.+|+|| |+++||+||+.||||+.+..++.++.+..
T Consensus        56 ~~~~v~vl~~~~~~~--~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE-~p~~aA~REL~EEtG~~~~~l~~l~~~~~  132 (209)
T d1g0sa_          56 RGHAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLA  132 (209)
T ss_dssp             CCCEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEES
T ss_pred             cCCEEEEEEEEecCC--eEEEEEEEeccccccCCCceEEeeceeecCCCc-CHHHHHHHHHHhhhcccccceeecccccc
Confidence            345566655654444  67777654321  0  12236899999999999 99999999999999999999999988765


Q ss_pred             hHhhhcceeeeEeeEeeccccC--CCCCCccchhhhcccchhhhccc
Q 025031          142 FLSKYLLRVVPVIGILHNRKAF--KPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       142 ~~~~~~~~v~~~v~~~~~~~~~--~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ........++.|++.+......  ....+++|..++.|+|++++.+.
T Consensus       133 spg~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~  179 (209)
T d1g0sa_         133 SPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             CTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             CCcccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHH
Confidence            5555566677788775532211  12345678889999999998764

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=2.6e-13  Score=112.48  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=77.4

Q ss_pred             cceeEEEEEeecCCCceEEEEeeccccc---c--cccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceeeeeehh
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRL---S--THSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDVVTVIE  140 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~---~--~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~l~~l~  140 (259)
                      +.-||.|+.++..++  +|+|++.-+..   .  ...-.|.+|||.+| +| ++++||+||+.||||+.+..+..++.+.
T Consensus        42 ~~~aV~Vl~~~~~~~--~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e-~p~~aA~REL~EEtG~~~~~~~~lg~~~  117 (189)
T d1viua_          42 RGNGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELY  117 (189)
T ss_dssp             CCCEEEEEEEETTTT--EEEEEEEECHHHHTTTCSSCEEEECEEEECT-TS-CHHHHHHHHHHHHHSCCCCCCEEEEEEE
T ss_pred             cCCEEEEEEEEcCCC--EEEEEEeeccceeeccCCCcceecCcEEecC-CC-CHHHHHHHHHHHhhCCcceEEEEcceee
Confidence            345677766654444  67777653220   0  11235789999998 56 5799999999999999999999998865


Q ss_pred             hhHhhhcceeeeEeeEeeccccC-CCCCCccchhhhcccchhhhccc
Q 025031          141 PFLSKYLLRVVPVIGILHNRKAF-KPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       141 ~~~~~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      .....+...++.|++.+...... ....+.+|..++.|+|++++.+.
T Consensus       118 ~spG~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~  164 (189)
T d1viua_         118 MSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEM  164 (189)
T ss_dssp             SCTTTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHH
T ss_pred             cCccccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHH
Confidence            44444556678888775543211 11235578889999999998764

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.35  E-value=2e-13  Score=113.79  Aligned_cols=115  Identities=20%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             CccceeEEEEEeecCCC--------ceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCCCcceee
Q 025031           64 RPKKAAVLVCLFEGDNG--------ELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLDPSLVDV  135 (259)
Q Consensus        64 ~~r~aaVli~l~~~~~g--------~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~~~~i~~  135 (259)
                      +.|+++++++... +.+        .-.||+++|.      .|.|+||||++|.||.+.++||.||+.||||+.+..+.+
T Consensus        18 g~r~a~~~~~~~~-~~~~~~~~~~~~~~vl~~~r~------~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l   90 (196)
T d1u20a1          18 GYKHACHALLHAP-SQAKLFDRVPIRRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV   90 (196)
T ss_dssp             SCEEEEEEEEEEE-CCCEETTTEECCEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCC
T ss_pred             CcceEEEEEEEcC-CCceEEEEecCCcEEEEEEec------CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEE
Confidence            4566666554443 222        1257777764      489999999999999335789999999999998877665


Q ss_pred             eeehh--hh-Hhh-hcceeeeEeeEeecc-------ccCCCCCCccchhhhcccchhhhcc
Q 025031          136 VTVIE--PF-LSK-YLLRVVPVIGILHNR-------KAFKPTPNPGEVEEVFDAPLEMFLK  185 (259)
Q Consensus       136 l~~l~--~~-~~~-~~~~v~~~v~~~~~~-------~~~~~~~~~~Ev~~v~wvpl~ell~  185 (259)
                      +....  .. ... .....+.|++.+...       ........+.|+.++.|+|+.++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          91 TEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             EeeEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            43211  11 111 122233344433211       0122234456889999999998754

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.2e-13  Score=116.78  Aligned_cols=67  Identities=25%  Similarity=0.279  Sum_probs=53.5

Q ss_pred             cCccceeEEEEEee--c-----------CCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhCCC
Q 025031           63 FRPKKAAVLVCLFE--G-----------DNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIGLD  129 (259)
Q Consensus        63 ~~~r~aaVli~l~~--~-----------~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~GL~  129 (259)
                      +++.+||-.|+-.-  +           ..+.++|||++|...     |+|+||||++|+|| ++.+||+||+.||||+.
T Consensus       107 wGpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d~-----g~WaLPGG~Vd~GE-s~~~Aa~REl~EETGl~  180 (292)
T d1q33a_         107 WGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDC-----GEWAIPGGMVDPGE-KISATLKREFGEEALNS  180 (292)
T ss_dssp             SEEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTT-----CSEECCCEECCTTC-CHHHHHHHHHHHHHSCG
T ss_pred             cCccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecCC-----CcEeCCcccCCCCC-CHHHHHHHHHHHHhCcc
Confidence            46678887776431  1           112478999999875     89999999999999 99999999999999998


Q ss_pred             Ccceee
Q 025031          130 PSLVDV  135 (259)
Q Consensus       130 ~~~i~~  135 (259)
                      ......
T Consensus       181 ~~~~~~  186 (292)
T d1q33a_         181 LQKTSA  186 (292)
T ss_dssp             GGSCSS
T ss_pred             cccccc
Confidence            765544

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.3e-13  Score=103.92  Aligned_cols=113  Identities=14%  Similarity=0.048  Sum_probs=80.1

Q ss_pred             cceeEEEEEeecCCCceEEEEeecccccccccceeecCCCCCCCCCCCchhhhhHHHHHhhC--CCCcceeeeeehhhhH
Q 025031           66 KKAAVLVCLFEGDNGELRVILTKRASRLSTHSGEVSLPGGKAEEGDEDDGETATREAKEEIG--LDPSLVDVVTVIEPFL  143 (259)
Q Consensus        66 r~aaVli~l~~~~~g~~~vLL~kRs~~~~~~~G~wsfPGG~ve~gE~s~~~aA~REl~EE~G--L~~~~i~~l~~l~~~~  143 (259)
                      +..+++|+...+.. +-+|||++|+.. +.++|+|+||||.++.+| +..++|+||..+|.+  +.+.....++.+.+.+
T Consensus        12 ~~~~~~vv~~~~~~-~~~iLl~kR~~~-g~l~GlWefP~~~~~~~e-~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~f   88 (142)
T d1x51a1          12 ESSATCVLEQPGAL-GAQILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQELQRWAGPLPATHLRHLGEVVHTF   88 (142)
T ss_dssp             EEEEEEEEEEECSS-SEEEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBC
T ss_pred             EEEEEEEEEecCCC-CCEEEEEECCCC-CCCCcceeeeEeeccCCc-chhHHHHHHHHHHhccCcceeeeeeeccceecc
Confidence            44555554443221 228999999876 789999999999999999 777777766544444  4555666777777777


Q ss_pred             hhhcceeeeEeeEeeccccCCCCCCccchhhhcccchhhhccc
Q 025031          144 SKYLLRVVPVIGILHNRKAFKPTPNPGEVEEVFDAPLEMFLKD  186 (259)
Q Consensus       144 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~ell~~  186 (259)
                      ++....+++|.+.+....     +...|.++..|++++++.+-
T Consensus        89 sH~~~~~~v~~~~~~~~~-----~~~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1          89 SHIKLTYQVYGLALEGQT-----PVTTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             SSCEEEEEEEEEECSSCC-----CCCCCCTTEEEEEHHHHHHS
T ss_pred             CCcceEEEEEEEEEeCCC-----cccccCccCEEeeHHHcccc
Confidence            777777777777665421     23357788999999998753