Citrus Sinensis ID: 025061

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEcccccEEEEccccccccccccccccEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHcccccccccccccccEEEcEEEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHcccccccccccEcccccccccccccEEEEEEcccccccccccccccccHccccccHHHHHHHHHHHHHHHHcHHHcccccHHcccEEEEcccccEEEEEccccEEEcccccccEEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHcccccccccccccEEEEEEccEEEEEEEEccccccccEEEEEEEEcccccEcEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msesrsqsqnmasisplhtwsqrphhasftafsnnkgtnqyKKQFVFCCKKQEQEDDARTLNRFrieeqdddsrTKRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFeisipqdwqlgagepngfksitafypqeassssVSVVITGlgpdftrmesfgKVEAFADTLVSGldrswrrppgvaaKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Flexible Loop (DISEMBL)
msesrsqsqNMASisplhtwsqrPHHASFTAFSNNKGTNQYKKQFVFCCKKQeqeddartlnrfrieeqdddsrtkRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYpqeassssVSVVITGLGPDFTRMESFGKVEAFADTLVsgldrswrrppGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEeesekygsniekavasfrfi
Low Complexity Region (SEG)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered region (IsUnstruct)
*************************************TNQYKKQFVFCCK****************************EVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQE***SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVE********************
Disordered Region (DISOPRED)
***************PLHTWSQRP*****************************************************REVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLV****************LIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISEMBL)
*************ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISPRO)
*************ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQ********************SRTKRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9S720	247	PsbP domain-containing pr	yes	no	0.914	0.955	0.590	8e-76

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2

 Score =  283 bits (724), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/259 (59%), Positives = 179/259 (69%), Gaps = 23/259 (8%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAND----LRVYTDELNKFEISIPQDWQL 124
           +D     KRR+VM Q+A +    P  +S A A  +     RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 125 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 184
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 185 RPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 239
           +P GV AKLID      FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 240 ESEKYGSNIEKAVASFRFI 258
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
255539324	264	conserved hypothetical protein [Ricinus	0.914	0.893	0.632	2e-81
225457650	253	PREDICTED: psbP domain-containing protei	0.926	0.944	0.603	4e-79
449458059	257	PREDICTED: psbP domain-containing protei	0.720	0.723	0.714	1e-75
147809819	247	hypothetical protein VITISV_030793 [Viti	0.864	0.902	0.604	3e-75
188509930	274	unknown predicted protein [Gossypioides	0.713	0.671	0.728	5e-75
224083366	193	predicted protein [Populus trichocarpa]	0.682	0.911	0.740	8e-75
21537211	247	thylakoid lumen protein, chloroplast pre	0.914	0.955	0.590	4e-74
18411110	247	PsbP domain-containing protein 3 [Arabid	0.914	0.955	0.590	5e-74
449522159	188	PREDICTED: psbP domain-containing protei	0.689	0.946	0.728	9e-74
297839519	225	hypothetical protein ARALYDRAFT_476802 [	0.779	0.893	0.669	9e-73

>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis] gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/253 (63%), Positives = 192/253 (75%), Gaps = 17/253 (6%)

Query: 15  SPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDAR--TLNRFRIEEQDDD 72
           +PLH    +P+  +F + S +   N  +KQ + CC     ++D       RFR++E    
Sbjct: 20  TPLHLL--KPN-LNFLSASPSFRFNSCRKQHLPCCTNSFPDEDQHQPLFCRFRLQEP--- 73

Query: 73  SRTKRREVMFQLAFT-ACSFPAIVSYALA-ANDLRVYTDELNKFEISIPQDWQLGAGEPN 130
               RRE +F +AFT   +FP ++S A A  +D R+YTD+ NKF+ISIPQDW++GAGEPN
Sbjct: 74  --YGRREALFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPN 131

Query: 131 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 190
           GFKS+TAFYP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVA
Sbjct: 132 GFKSVTAFYPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVA 191

Query: 191 AKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 245
           AKLID       YYIEYTLQNPGE RKHLFSA+GMA NGWYNRLYTVTGQFVEEESE YG
Sbjct: 192 AKLIDCKATKGIYYIEYTLQNPGEGRKHLFSALGMAFNGWYNRLYTVTGQFVEEESENYG 251

Query: 246 SNIEKAVASFRFI 258
           S ++K V+SF+FI
Sbjct: 252 SKVQKVVSSFKFI 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera] gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/262 (60%), Positives = 192/262 (73%), Gaps = 23/262 (8%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGYGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA----ANDLRVYTDELNKFEISIPQD 121
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA      D +VY+DE+NKF+I IPQD
Sbjct: 55  IKEQHGGGR---REVVLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 122 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 181
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 182 SWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 236
           SW+RPPG+AAKLID      FYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ+
Sbjct: 172 SWQRPPGIAAKLIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQY 231

Query: 237 VEEESEKYGSNIEKAVASFRFI 258
           +EEESEK+ S IEK VASFRFI
Sbjct: 232 LEEESEKFSSKIEKVVASFRFI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 157/196 (80%), Gaps = 10/196 (5%)

Query: 73  SRTKRREVMFQLAFTACSFPAIVSYALA-----ANDLRVYTDELNKFEISIPQDWQLGAG 127
           S   RRE+M  + FTA SF  + S ALA     A D R YTDE NKF + IPQDWQ+G G
Sbjct: 62  SGVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNG 121

Query: 128 EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP 187
           EPNGFKS+TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPP
Sbjct: 122 EPNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPP 181

Query: 188 GVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESE 242
           GVAAKLID       YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE
Sbjct: 182 GVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESE 241

Query: 243 KYGSNIEKAVASFRFI 258
            Y S IEK V SF FI
Sbjct: 242 SYSSKIEKVVNSFAFI 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809819|emb|CAN64877.1| hypothetical protein VITISV_030793 [Vitis vinifera]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/243 (60%), Positives = 181/243 (74%), Gaps = 20/243 (8%)

Query: 23  RPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKR 77
           R     F+A+S+ KG         KKQ V  CK + +E++  +   F I+EQ    R   
Sbjct: 10  RSGSCDFSAYSSKKGCGSRTGKCGKKQRVVFCKNENKEEEKTS---FGIKEQHGGGR--- 63

Query: 78  REVMFQLAFTACSFPAIVSYALA----ANDLRVYTDELNKFEISIPQDWQLGAGEPNGFK 133
           REV+ Q+ F+  S  AIV  ALA      D +VY+DE+NKF+I IPQDWQ+G+GEP+GFK
Sbjct: 64  REVVLQIVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFK 123

Query: 134 SITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL 193
           S+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDRSW+RPPG+AAKL
Sbjct: 124 SVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKL 183

Query: 194 IDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI 248
           ID      FYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ++EEESEK+ S I
Sbjct: 184 IDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKI 243

Query: 249 EKA 251
           EK 
Sbjct: 244 EKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]

 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 145/199 (72%), Positives = 163/199 (81%), Gaps = 15/199 (7%)

Query: 67  EEQDDD---SRTKRREVMFQLAFTACSFP-AIVSYALAA------NDLRVYTDELNKFEI 116
           E ++DD   + T+RR+ + Q    A SFP  I+S A+A        D RVYTDE NKF+I
Sbjct: 46  EMKEDDGHATSTRRRQFILQAPLIAFSFPQLIMSTAIAVAEIDVPQDFRVYTDEQNKFKI 105

Query: 117 SIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLV 176
            IPQDWQ+GAGEPN FKSITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLV
Sbjct: 106 FIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLV 165

Query: 177 SGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 231
           SGLDRSW+RPPGVAAKLID      FYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYT
Sbjct: 166 SGLDRSWQRPPGVAAKLIDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYT 225

Query: 232 VTGQFVEEESEKYGSNIEK 250
           VTGQFVEEE+EKYGS IEK
Sbjct: 226 VTGQFVEEEAEKYGSRIEK 244

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa] gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/185 (74%), Positives = 158/185 (85%), Gaps = 9/185 (4%)

Query: 75  TKRREVMFQLAFTACSFPAIVSYALAAN----DLRVYTDELNKFEISIPQDWQLGAGEPN 130
           TKRRE +F + FTA +FPAI S ALAA     D RVYTD+ NKF+ISIPQ WQ+GAGEP+
Sbjct: 2   TKRREALFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPS 61

Query: 131 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 190
           G+KS+TAFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVA
Sbjct: 62  GYKSVTAFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVA 121

Query: 191 AKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 245
           AKLID       YYIEYTLQNPGESR+HL SA+G+  NGWYNRLYTVTGQFV+EESEK+G
Sbjct: 122 AKLIDSKAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFG 181

Query: 246 SNIEK 250
           + I K
Sbjct: 182 TEIRK 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 153/259 (59%), Positives = 179/259 (69%), Gaps = 23/259 (8%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAND----LRVYTDELNKFEISIPQDWQL 124
           +D     KRR+VM Q+A +    P  +S A A  +     RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 125 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 184
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 185 RPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 239
           +P GV AKLID      FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 240 ESEKYGSNIEKAVASFRFI 258
           ES +  S I+K V SFRFI
Sbjct: 229 ESSEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana] gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic; AltName: Full=OEC23-like protein 2; Flags: Precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana] gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana] gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 153/259 (59%), Positives = 179/259 (69%), Gaps = 23/259 (8%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAND----LRVYTDELNKFEISIPQDWQL 124
           +D     KRR+VM Q+A +    P  +S A A  +     RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 125 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 184
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 185 RPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 239
           +P GV AKLID      FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 240 ESEKYGSNIEKAVASFRFI 258
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 153/188 (81%), Gaps = 10/188 (5%)

Query: 81  MFQLAFTACSFPAIVSYALA-----ANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 135
           M  + FTA SF  +VS ALA     A D R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 1   MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60

Query: 136 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 195
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61  TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120

Query: 196 W-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 250
                  YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 121 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 180

Query: 251 AVASFRFI 258
            V SF FI
Sbjct: 181 VVNSFAFI 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata]

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 142/212 (66%), Positives = 161/212 (75%), Gaps = 11/212 (5%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAAND----LRVYTDELN 112
           D+    + RI  +D     KRRE M Q+A +    P  VS A A  +     RVYTDE N
Sbjct: 15  DSSNEEQHRISSRDHVG-IKRREAMLQIASSVFFLPLAVSPAFAETNASEAFRVYTDEAN 73

Query: 113 KFEISIPQ-DWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF 171
           KFEISIPQ DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAF
Sbjct: 74  KFEISIPQEDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAF 133

Query: 172 ADTLVSGLDRSWRRPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWY 226
           A+TLVSGLDRSW++P GV AKLID      FYYIEYTLQNPGE+RKHL+SAIGMA+NGWY
Sbjct: 134 AETLVSGLDRSWQKPAGVTAKLIDSRSSKGFYYIEYTLQNPGEARKHLYSAIGMATNGWY 193

Query: 227 NRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 258
           NRLYTVTGQF +EES +  S I+K V SFRFI
Sbjct: 194 NRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.922	0.963	0.591	3e-69

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 152/257 (59%), Positives = 178/257 (69%)

Query:    11 MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQD 70
             MA+ISP   W   P      +FSN + T    ++           D +    + RI  +D
Sbjct:     1 MAAISP---WLSSPQ-----SFSNPRVTITDSRRCSSISAAISVLDSSNE-EQHRISSRD 51

Query:    71 DDSRTKRREVMFQLAFTACSFPAIVSYALAAND----LRVYTDELNKFEISIPQDWQLGA 126
                  KRR+VM Q+A +    P  +S A A  +     RVYTDE NKFEISIPQDWQ+G 
Sbjct:    52 HVGM-KRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQ 110

Query:   127 GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP 186
              EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P
Sbjct:   111 AEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKP 170

Query:   187 PGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEES 241
              GV AKLID      FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES
Sbjct:   171 VGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEES 230

Query:   242 EKYGSNIEKAVASFRFI 258
              +  S I+K V SFRFI
Sbjct:   231 AEQSSKIQKTVKSFRFI 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       258   0.00087  114 3  11 22  0.46    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.25u 0.11s 23.36t   Elapsed:  00:00:01
  Total cpu time:  23.25u 0.11s 23.36t   Elapsed:  00:00:01
  Start:  Sat May 11 14:13:25 2013   End:  Sat May 11 14:13:26 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S720	PPD3_ARATH	No assigned EC number	0.5907	0.9147	0.9554	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
pfam01789	163	pfam01789, PsbP, PsbP	4e-06

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 22/126 (17%)

Query: 144 SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG-LDRSWRRPPGV--AAKLIDW---- 196
           S  +VSVVI+ +    + +E  G  E   + L+ G L      P G    A+L++     
Sbjct: 47  SDENVSVVISPVDKKKS-LEDLGSPEEVGERLLRGVLA-----PEGSGREAELLEASERE 100

Query: 197 -----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 251
                +Y +EY ++      +H  + +     G   +LYT+  Q  E+   K     E+ 
Sbjct: 101 VDGKTYYDLEYLVRLADGGDRHELATVT-VDRG---KLYTLAAQTNEKRWFKVKKLFERV 156

Query: 252 VASFRF 257
           V SF  
Sbjct: 157 VDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.95
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.67
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	93.8
COG5435	147	Uncharacterized conserved protein [Function unknow	92.92

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=4.7e-48  Score=351.67  Aligned_cols=179  Identities=20%  Similarity=0.301  Sum_probs=151.8

Q ss_pred             CcchhhHHHHHHHH--HHHhcccccchhhhhc-cCceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCCCceE
Q 025061           72 DSRTKRREVMFQLA--FTACSFPAIVSYALAA-NDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSV  148 (258)
Q Consensus        72 ~~~~~RR~~Ll~i~--~s~~sl~~~~s~A~A~-~gf~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNV  148 (258)
                      ..++.||.+++..+  +.++...+..++|+|+ .||++|+|+.|||+|+||.||+++++  +|+++  +|+|.++.+|||
T Consensus        74 ~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~--~G~DV--vFrD~Ie~~ENV  149 (286)
T PLN00059         74 VCAVGRRKSMMMGLLMSGLIVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRG--AGADI--FFRDPVVLDENL  149 (286)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHhhcCchhhcCCcccceeEcCCCCeEEeCCCCCeEecc--CCCce--EEeccCccccce
Confidence            46789999965322  3332223234466766 79999999999999999999999996  48886  899999999999


Q ss_pred             EEEEEcCCC-CccccccCCCHHHHHHHHHhccccCC---CCCCCccceeeee----------EEEEEEEEeCCC------
Q 025061          149 SVVITGLGP-DFTRMESFGKVEAFADTLVSGLDRSW---RRPPGVAAKLIDW----------FYYIEYTLQNPG------  208 (258)
Q Consensus       149 SVvItpv~~-d~~sL~dfGsp~evae~Lv~~~~~s~---~~~~g~~AkLida----------YY~lEY~v~~p~------  208 (258)
                      ||+|+|+++ ++++|+|||+|+|||++|++++++++   +...++.++|++|          ||+|||.+++++      
T Consensus       150 SV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~  229 (286)
T PLN00059        150 SVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELA  229 (286)
T ss_pred             EEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCccccccc
Confidence            999998864 57899999999999999999987643   2234799999999          999999999972      


Q ss_pred             ----------CCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceeeC
Q 025061          209 ----------ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  258 (258)
Q Consensus       209 ----------e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v~  258 (258)
                                +|.||+|++|+|.+    ||||||++|+||+||+|++++|++||+||+|+
T Consensus       230 ~~~qdr~~~~~w~RH~LA~v~V~n----GkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        230 VMPQDRVARLEWNRRYLAVLGVEN----DRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE  285 (286)
T ss_pred             ccccccccccccceeeEEEEEEeC----CEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence                      46899999999986    49999999999999999999999999999985

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.3e-43  Score=321.97  Aligned_cols=174  Identities=22%  Similarity=0.247  Sum_probs=138.3

Q ss_pred             cchhhHHHHHHHHHHHhcccccchhhhh---c-----------cCceeeeeCCCceEEEccCCCcccccC-CCCcceEEE
Q 025061           73 SRTKRREVMFQLAFTACSFPAIVSYALA---A-----------NDLRVYTDELNKFEISIPQDWQLGAGE-PNGFKSITA  137 (258)
Q Consensus        73 ~~~~RR~~Ll~i~~s~~sl~~~~s~A~A---~-----------~gf~~y~D~~dGYsFlyPsgW~~v~g~-~~G~k~V~~  137 (258)
                      ..+.||.+|++++.+++ +.+.+++|.|   +           +||.+|.  +|||+|+||++|+++++. .+|.+  ++
T Consensus        48 ~~~srr~~l~~~~ga~a-~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~d--v~  122 (260)
T PLN00042         48 SAVSRRAALALLAGAAA-AGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQV--LR  122 (260)
T ss_pred             ccccHHHHHHHHHHHHH-hhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCce--EE
Confidence            55889988887776642 2232333322   1           8999998  599999999999988753 46774  49


Q ss_pred             ecCCCCCCceEEEEEEcCCCCccccccCCCHHH----HHHHHHhccccCC-----CCCC--Cccceeeee---------E
Q 025061          138 FYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FADTLVSGLDRSW-----RRPP--GVAAKLIDW---------F  197 (258)
Q Consensus       138 F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~e----vae~Lv~~~~~s~-----~~~~--g~~AkLida---------Y  197 (258)
                      |+|++++++||||+|+|+  ++++|+|||+|+|    |++.|.++.....     -..|  ..+|+|+++         |
T Consensus       123 f~D~~~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~Y  200 (260)
T PLN00042        123 FEDNFDATSNLSVMVTPT--DKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPY  200 (260)
T ss_pred             eeccccccccEEEEEecC--CcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEE
Confidence            999999999999999998  5689999999999    5555555543211     0112  347899999         9


Q ss_pred             EEEEEEEeCCC--CCceeEEEEEEEecCCccceEEEEEcccCchhhHHh-hHHHHHHhcceee
Q 025061          198 YYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASFRF  257 (258)
Q Consensus       198 Y~lEY~v~~p~--e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~-k~~l~~Vv~SF~v  257 (258)
                      |+|||.++.|+  ++.||+|++++|.+    ||||||++|+||+||.|+ ++.|++|++||+|
T Consensus       201 Y~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        201 YYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             EEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence            99999999986  57899999999974    499999999999999997 7789999999997

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=2.9e-40  Score=281.91  Aligned_cols=148  Identities=32%  Similarity=0.491  Sum_probs=128.9

Q ss_pred             hhccCceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhc
Q 025061           99 LAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG  178 (258)
Q Consensus        99 ~A~~gf~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~  178 (258)
                      .+.+||++|.|+.+||+|+||+||+++++  +|.+  ++|+|+.+.++||+|+|+|++.++ +|+|||+|++||++|+..
T Consensus        18 ~~~~~~~~y~d~~~~y~f~~P~gW~~~~~--~G~~--v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~~~   92 (175)
T PF01789_consen   18 EASTGFQPYTDSDDGYSFLYPSGWEEVDV--SGAD--VVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLLNG   92 (175)
T ss_dssp             T--SSEEEEEECTTTEEEEEETTEEEEES--TTEE--EEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHHHH
T ss_pred             cCCCCceEEEcCCCCEEEECCCCCeecCC--CCeE--EEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHhhh
Confidence            44589999999999999999999988887  5764  489999999999999999998775 999999999999999998


Q ss_pred             cccCCCCCCCccceeeee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHH
Q 025061          179 LDRSWRRPPGVAAKLIDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIE  249 (258)
Q Consensus       179 ~~~s~~~~~g~~AkLida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~  249 (258)
                      ++++.  ..++.++|+++         ||+|||.++.|+++.||.|++++|. |   ||||||++|++|+||+|+++.|+
T Consensus        93 ~~~~~--~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~-~---g~lY~l~~~a~e~~w~k~~~~l~  166 (175)
T PF01789_consen   93 ELASP--GSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVK-N---GKLYTLTAQAPESRWDKVEPKLR  166 (175)
T ss_dssp             CCCHC--TSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEE-T---TEEEEEEEEEEHHHHHTCHHHHH
T ss_pred             hcccc--cCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEE-C---CEEEEEEEEcCHHHHHHHHHHHH
Confidence            76522  22489999999         9999999999986789999999997 4   49999999999999999999999


Q ss_pred             HHhcceee
Q 025061          250 KAVASFRF  257 (258)
Q Consensus       250 ~Vv~SF~v  257 (258)
                      +|++||+|
T Consensus       167 ~iv~SF~v  174 (175)
T PF01789_consen  167 KIVDSFRV  174 (175)
T ss_dssp             HHHHC-EE
T ss_pred             HHHhcEEe
Confidence            99999998

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=7.6e-35  Score=264.62  Aligned_cols=173  Identities=15%  Similarity=0.175  Sum_probs=135.9

Q ss_pred             chhhHHHHHHHHHHHhcccccchhhhhc--------------cCceeeee-----------CCCceEEEccCCCcccccC
Q 025061           74 RTKRREVMFQLAFTACSFPAIVSYALAA--------------NDLRVYTD-----------ELNKFEISIPQDWQLGAGE  128 (258)
Q Consensus        74 ~~~RR~~Ll~i~~s~~sl~~~~s~A~A~--------------~gf~~y~D-----------~~dGYsFlyPsgW~~v~g~  128 (258)
                      ...||++|++++++.+.+..-..++.|-              .||--|.-           .-.||+|+||.||+++++.
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~Vs  121 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRVA  121 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcccc
Confidence            4789999999988632111111122221              47766652           3469999999999998764


Q ss_pred             C--CCc---------ceEEEecCCCCCCceEEEEEEcCC----CCccccccCCCHHHHHHHHHhccccCCCCCCCcccee
Q 025061          129 P--NGF---------KSITAFYPQEASSSSVSVVITGLG----PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL  193 (258)
Q Consensus       129 ~--~G~---------k~V~~F~d~~~~~eNVSVvItpv~----~d~~sL~dfGsp~evae~Lv~~~~~s~~~~~g~~AkL  193 (258)
                      .  +|.         -..++|+|+.  ++||+|+|+|+.    .+.++|+|||+|++|+++|.+.++.    ++++.++|
T Consensus       122 ~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g----~~~~~~eL  195 (263)
T PLN00067        122 NILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG----NSYDPDEL  195 (263)
T ss_pred             ccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc----CCCCCcce
Confidence            1  231         1234899954  779999999983    2337999999999999999988864    56788899


Q ss_pred             eee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061          194 IDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  257 (258)
Q Consensus       194 ida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v  257 (258)
                      +|+         ||+|||.+..++ +.||+|++++|. +   ||||||++|++|+||.|+++.|++|++||+|
T Consensus       196 LeAs~re~dGktYY~~E~~tp~a~-~gRHnLataTV~-~---GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        196 LETSVEKIGDQTYYKYVLETPFAL-TGSHNLAKATAK-G---NTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             EEeeeEeeCCeEEEEEEEEecCCC-CCceEEEEEEEE-C---CEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            999         999999999998 479999999995 4   5999999999999999999999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=2.5e-33  Score=255.70  Aligned_cols=167  Identities=20%  Similarity=0.267  Sum_probs=132.3

Q ss_pred             chhhHHHHHHHHHHH-hcccccchhhhh-----------------ccCceeeeeCC-------------CceEEEccCCC
Q 025061           74 RTKRREVMFQLAFTA-CSFPAIVSYALA-----------------ANDLRVYTDEL-------------NKFEISIPQDW  122 (258)
Q Consensus        74 ~~~RR~~Ll~i~~s~-~sl~~~~s~A~A-----------------~~gf~~y~D~~-------------dGYsFlyPsgW  122 (258)
                      .++||.+|+.+++++ +++.+....+.|                 +.||+.|.-+.             ..|+|+||+||
T Consensus        44 ~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW  123 (262)
T PLN00066         44 AVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGW  123 (262)
T ss_pred             hhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCC
Confidence            478999999766552 111111111121                 16889998665             57999999999


Q ss_pred             cccccC---CCCcceEEEecCCCCCCceEEEEEEcCC------CCccccccCCCHHHHHHHHHhccccCCCCCCCcccee
Q 025061          123 QLGAGE---PNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL  193 (258)
Q Consensus       123 ~~v~g~---~~G~k~V~~F~d~~~~~eNVSVvItpv~------~d~~sL~dfGsp~evae~Lv~~~~~s~~~~~g~~AkL  193 (258)
                      .++.+.   ..|+..++.|.+  ..++||+|+|+|+.      .++++|+|||+|++|+++|.+.++.    ++.+.++|
T Consensus       124 ~ev~VS~~d~gg~~vd~Rf~~--~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g----~~~~e~eL  197 (262)
T PLN00066        124 EEVPVSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIG----EPVEEGKV  197 (262)
T ss_pred             eEeecccccCCCCceEEEecc--CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcC----CCccccce
Confidence            998764   347666556655  68999999999985      2568999999999999999988764    44667888


Q ss_pred             eee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceeeC
Q 025061          194 IDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  258 (258)
Q Consensus       194 ida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v~  258 (258)
                      +++         ||+|||        .||+|++|+|.+    ||||||++|+||+||.|++++|++|++||+|+
T Consensus       198 l~a~~re~dGktYY~~E~--------~rH~LasaTV~~----GrLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        198 LSMEVAEHSGRTYYQFEL--------PPHTLVTATAAG----NRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             eEeeeeecCCcEEEEEEE--------eCceEEEEEEEC----CEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence            888         999999        279999999974    49999999999999999999999999999985

>PLN03152 hypothetical protein; Provisional

Probab=99.95  E-value=8.5e-28  Score=214.68  Aligned_cols=135  Identities=19%  Similarity=0.306  Sum_probs=106.0

Q ss_pred             ceeeeeCCCceEEEccCCCccccc------------CCCCcceEEEecCCCCCCceEEEEEEcCC------CCccccccC
Q 025061          104 LRVYTDELNKFEISIPQDWQLGAG------------EPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESF  165 (258)
Q Consensus       104 f~~y~D~~dGYsFlyPsgW~~v~g------------~~~G~k~V~~F~d~~~~~eNVSVvItpv~------~d~~sL~df  165 (258)
                      .-.|.  ++||++-||-++..+-+            .-+-++.+.+=+...+.+|||||+|+|++      -+.++|+||
T Consensus        78 w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDL  155 (241)
T PLN03152         78 WFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDL  155 (241)
T ss_pred             hhhhh--CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHc
Confidence            33455  89999999999986532            11123333344566789999999999986      255899999


Q ss_pred             CCHHHHHHHHHhccccCCCCCCC---ccceeeee--------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEc
Q 025061          166 GKVEAFADTLVSGLDRSWRRPPG---VAAKLIDW--------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG  234 (258)
Q Consensus       166 Gsp~evae~Lv~~~~~s~~~~~g---~~AkLida--------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTlta  234 (258)
                      |+|+|||+.++         |++   +.+++++.        ||+|||.++     .||.|++|+|.+    ||||||++
T Consensus       156 Gsp~EVgkv~v---------P~g~~~~saR~iel~~E~dGKtYY~lEy~v~-----~RH~LaTVaVsr----GKLYTl~a  217 (241)
T PLN03152        156 GSLKEAAKIFV---------PGGATLYSARTIKVKEEEGIRTYYFYEFGRD-----EQHVALVATVNS----GKAYIAGA  217 (241)
T ss_pred             CCHHHHHHhhC---------CCcccccccceeeeeeecCCceeEEEEEEeC-----CcEEEEEEEEcC----CeEEEEec
Confidence            99999996665         222   23444433        999999885     599999999965    49999999


Q ss_pred             ccCchhhHHhhHHHHHHhcceeeC
Q 025061          235 QFVEEESEKYGSNIEKAVASFRFI  258 (258)
Q Consensus       235 q~~E~rw~K~k~~l~~Vv~SF~v~  258 (258)
                      |++|+||+|++++|+++++||+|+
T Consensus       218 St~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        218 TAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             CCchhchHHHHHHHHHHHhheeeC
Confidence            999999999999999999999996

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.67  E-value=0.0011  Score=53.60  Aligned_cols=124  Identities=16%  Similarity=0.186  Sum_probs=75.3

Q ss_pred             EEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccCCCC---CCCccc
Q 025061          115 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRR---PPGVAA  191 (258)
Q Consensus       115 sFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s~~~---~~g~~A  191 (258)
                      +|..|.+|+.-...      |+++.+......|+.|...+++++       .+.+++.++.++.+-+.-+.   -+.+..
T Consensus         3 ~~~lP~~~~D~t~n------v~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~~l~~~~~~~~~~~   69 (130)
T PF08786_consen    3 SLTLPDGWQDRTMN------VLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRKQLPGFQLVERQPI   69 (130)
T ss_dssp             EEEEETTSEE--BE------EEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHCCSTT-EEEEEEEE
T ss_pred             eEeCCCcceeceEE------EEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHhhCCCcEEEeeEEE
Confidence            46679999854432      445555444456666666676544       46778888888776321100   001111


Q ss_pred             eeeee-EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcce
Q 025061          192 KLIDW-FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF  255 (258)
Q Consensus       192 kLida-YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF  255 (258)
                      +|-.. -+.++|.-..++. .-|..-++.+-. |  +++|++|..++..-.+..++.++.+++||
T Consensus        70 ~l~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~-~--~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   70 TLGGRPARELEYSFRSGGQ-PVYQRQAAVLLP-G--RRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EETTEEEEEEEEEEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EeCCCCeEEEEEEEeeCCE-EEEEEEEEEEEC-C--CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            12111 8888888887765 456666655533 2  59999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=93.80  E-value=2.5  Score=37.22  Aligned_cols=134  Identities=14%  Similarity=0.173  Sum_probs=75.9

Q ss_pred             eEEEccCCCcccccC-CCCcceEEEecCC-CCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhcccc--CCCCCCCc
Q 025061          114 FEISIPQDWQLGAGE-PNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR--SWRRPPGV  189 (258)
Q Consensus       114 YsFlyPsgW~~v~g~-~~G~k~V~~F~d~-~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~--s~~~~~g~  189 (258)
                      -++-.|.||...... ++..-.+++.... ..-..|+-|++..+..++       +|+|+.+.=-..+..  -|....+-
T Consensus        33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~~~l~g~~~~~~s  105 (175)
T PF10738_consen   33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADAQNLPGFRELDGS  105 (175)
T ss_pred             EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhHhhCcCcccccCC
Confidence            567789999987542 2222335566542 344679999998875555       466665532111111  01111111


Q ss_pred             cceeeee-EEEEEEEEeCCCCCceeEEEE--EEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061          190 AAKLIDW-FYYIEYTLQNPGESRKHLFSA--IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  257 (258)
Q Consensus       190 ~AkLida-YY~lEY~v~~p~e~~RH~ls~--v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v  257 (258)
                      .+++--- -+.+|-+-+..+ .+||....  |.-+.++  .-|..|++++.+..=...-+..+.|++.|+|
T Consensus       106 ~~~~~GfpS~~i~GtY~~~g-~~~~~~~r~VV~~~~~~--~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen  106 PSDFSGFPSSQIEGTYDKDG-MRLHTSQRTVVIPGDDQ--RYLVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             ccccCCCceeEEEEEEeeCC-EEeEeEEEEEEEeCCCc--EEEEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence            1111110 455664444433 23444433  2222333  3477889999999999999999999999987

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=92.92  E-value=1.4  Score=38.20  Aligned_cols=125  Identities=17%  Similarity=0.240  Sum_probs=73.1

Q ss_pred             EEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEE--cCCCCccccccCCCHHHHHHHHHhccccCC---CCCCCc
Q 025061          115 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSW---RRPPGV  189 (258)
Q Consensus       115 sFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvIt--pv~~d~~sL~dfGsp~evae~Lv~~~~~s~---~~~~g~  189 (258)
                      .|..|..|+.-.        |-+|--.....+-+|.+|+  ++.++ .      +-.++.++.+..+-+--   .--...
T Consensus        10 ~l~lP~~w~DrS--------vNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k~Lpgy~~~~~~   74 (147)
T COG5435          10 TLELPAAWQDRS--------VNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRKQLPGYELHHRR   74 (147)
T ss_pred             eEcCcchhccce--------EEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHhhCCCeEEeecc
Confidence            478899998433        2244323333667777776  44443 1      23455666655542210   000112


Q ss_pred             cceeeee-EEEEEEEEeCC-CCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061          190 AAKLIDW-FYYIEYTLQNP-GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  257 (258)
Q Consensus       190 ~AkLida-YY~lEY~v~~p-~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v  257 (258)
                      ..++-.+ --.++|.-+.| .+++|=..-.+.+.++   .++-++|+.++-.--++.+....++|.||..
T Consensus        75 e~~v~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          75 EIEVGGAAAPLLDYQWTSPEGEQRRVQQRQVFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             ccccCccccceeEEEeecCCCCCceEEEEEeecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            2233222 44556666664 3333322223455554   5999999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	1e-23
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	5e-19
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	5e-09

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 93.0 bits (230), Expect = 1e-23
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 16/174 (9%)

Query: 92  PAIVSYALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV 151
           P      +    L+ Y+D  + +E   P  W     +         F        ++SV+
Sbjct: 2   PLGSCGGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVI 61

Query: 152 ITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID---------WFYYIEY 202
           I+ +  D T +   G         +  ++          A+LI+          +Y +EY
Sbjct: 62  ISEIPSDKT-LTDLGTATDVGYRFMKTVND--ASQGDRQAELINAEARDEDGQVYYTLEY 118

Query: 203 TLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 256
            +       +H  +++         +L T      E+  +   S  +   +SF 
Sbjct: 119 RVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFH 168

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 80.7 bits (198), Expect = 5e-19
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 98  ALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP 157
           + A + L+ Y D  + +E   P+ W     E         F+    ++ +VSVV+  +  
Sbjct: 2   SSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVV---FHDIIETTENVSVVVNTVAS 58

Query: 158 DFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID---------WFYYIEYTLQNPG 208
             + +E  G  E   D L+  +        G ++ LI           +Y +EY +  PG
Sbjct: 59  TKS-LEELGSPEEVGDRLLRNIIA--PSESGRSSALIAATSQKADDKTYYILEYAVTLPG 115

Query: 209 ----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 256
                 ++H  S+I ++      ++YT++    EE   K     +  V+SF 
Sbjct: 116 DGNTAQQRHNLSSIAVSRG----KVYTLSVSAPEERWPKVEDQFKTIVSSFT 163

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 53.7 bits (128), Expect = 5e-09
 Identities = 33/177 (18%), Positives = 54/177 (30%), Gaps = 32/177 (18%)

Query: 103 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRM 162
           D + Y    + F++ IP  W     E      +  F     ++S+V V IT    D   +
Sbjct: 8   DFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSI 62

Query: 163 ESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLID---------WFYYIEY 202
             FG  E F   +   L R                    A +++          +YY+  
Sbjct: 63  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI 122

Query: 203 TLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 256
             +     E  KH      +       +LY    Q  ++   K     +E    SF 
Sbjct: 123 LTRTADGNEGGKHQLVTATVNDG----KLYICKAQAGDKRWFKGAKKFVENTATSFS 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.02
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	96.56

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=3.6e-37  Score=258.13  Aligned_cols=147  Identities=24%  Similarity=0.431  Sum_probs=130.4

Q ss_pred             cCceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhcccc
Q 025061          102 NDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR  181 (258)
Q Consensus       102 ~gf~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~  181 (258)
                      +||++|.|+.+||+|+||++|+++... +|.  .++|+|+.+..+||+|+|+|+++ +++|++||+|++||++|++...+
T Consensus         6 ~g~~~~~D~~~gysf~~P~~W~~~~~~-~g~--~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~~   81 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPRGWVQVQVE-DPV--DVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNIIA   81 (165)
T ss_dssp             CCEEEEEETTTTEEEEEETTEEEECCC-TTE--EEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTTS
T ss_pred             CCceEEEcCCCCEEEEcCCCCeEecCC-CCc--eEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhhc
Confidence            799999999999999999999998753 365  44899999889999999999975 58999999999999999998654


Q ss_pred             CCCCCCCccceeeee---------EEEEEEEEeCCC----CCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHH
Q 025061          182 SWRRPPGVAAKLIDW---------FYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI  248 (258)
Q Consensus       182 s~~~~~g~~AkLida---------YY~lEY~v~~p~----e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l  248 (258)
                      +  +..++.++|+++         ||+|||+++.|+    ++.||.|++++|. |   ||||||++|+||++|+|+++.|
T Consensus        82 ~--~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~-~---g~lY~l~~sape~~w~~~~~~l  155 (165)
T 2xb3_A           82 P--SESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVS-R---GKVYTLSVSAPEERWPKVEDQF  155 (165)
T ss_dssp             C--TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEE-T---TEEEEEEEEEEGGGHHHHHHHH
T ss_pred             C--CCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEE-C---CEEEEEEEecCHHHhHHHHHHH
Confidence            1  123789999998         999999999997    4789999999997 4   4999999999999999999999


Q ss_pred             HHHhcceeeC
Q 025061          249 EKAVASFRFI  258 (258)
Q Consensus       249 ~~Vv~SF~v~  258 (258)
                      ++|++||+|+
T Consensus       156 ~~v~~SF~v~  165 (165)
T 2xb3_A          156 KTIVSSFTVY  165 (165)
T ss_dssp             HHHHHTCEEC
T ss_pred             HHHHhhEEeC
Confidence            9999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=4e-39  Score=272.89  Aligned_cols=150  Identities=17%  Similarity=0.300  Sum_probs=132.3

Q ss_pred             hccCceeeeeCCCceEEEccCCCcccccC--CCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHh
Q 025061          100 AANDLRVYTDELNKFEISIPQDWQLGAGE--PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVS  177 (258)
Q Consensus       100 A~~gf~~y~D~~dGYsFlyPsgW~~v~g~--~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~  177 (258)
                      +.+||++|+|+.|||+|+||+||+++++.  .+|.  .++|+|+.+.++||+|+|+|++.+ ++|+|||+|++||++|++
T Consensus        10 ~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~--~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~   86 (170)
T 2lnj_A           10 GIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGV--DVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMK   86 (170)
Confidence            34799999999999999999999988753  2255  458999999999999999999764 899999999999999999


Q ss_pred             ccccCCCCCCCccceeeee---------EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHH
Q 025061          178 GLDRSWRRPPGVAAKLIDW---------FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI  248 (258)
Q Consensus       178 ~~~~s~~~~~g~~AkLida---------YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l  248 (258)
                      .+.++  ..+++.|+|+++         ||++||+++.|+.+.||+|++++|. |   ||||||++|+||++|+|.++.|
T Consensus        87 ~~~~~--~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~-~---gklY~l~~~ape~~w~~~~~~l  160 (170)
T 2lnj_A           87 TVNDA--SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTN-R---GKLITFDLSTAEDRWDTVKSLF  160 (170)
Confidence            87542  234889999998         9999999999955789999999996 4   4999999999999999999999


Q ss_pred             HHHhcceeeC
Q 025061          249 EKAVASFRFI  258 (258)
Q Consensus       249 ~~Vv~SF~v~  258 (258)
                      ++|++||+|+
T Consensus       161 ~~v~~SF~v~  170 (170)
T 2lnj_A          161 DTVASSFHVY  170 (170)
Confidence            9999999985

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=4.1e-36  Score=258.10  Aligned_cols=147  Identities=22%  Similarity=0.344  Sum_probs=120.3

Q ss_pred             cCceeeeeCCCceEEEccCCCcccccC-CCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccc
Q 025061          102 NDLRVYTDELNKFEISIPQDWQLGAGE-PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD  180 (258)
Q Consensus       102 ~gf~~y~D~~dGYsFlyPsgW~~v~g~-~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~  180 (258)
                      +||++|.  .|||+|+||++|+++++. .+|.  .++|+|+++.++||+|+|+|+  ++++|+|||+|++|++++...+.
T Consensus         7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~--~~~f~d~~~~~~nvsV~v~p~--~~~si~dlGspe~~~~~v~~~l~   80 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQ--VLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLG   80 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTCEECCCCCSTTE--EEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCceEEe--cCCEEEEcCCCCcccccccCCCc--eEEEeCCcCCCccEEEEEeCC--CCCChhHCCCHHHHHHHHHHHHH
Confidence            7999999  999999999999987653 3566  458999999999999999999  45899999999997666544443


Q ss_pred             cCC-----------CCCCCccceeeee---------EEEEEEEEeCCC--CCceeEEEEEEEecCCccceEEEEEcccCc
Q 025061          181 RSW-----------RRPPGVAAKLIDW---------FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVE  238 (258)
Q Consensus       181 ~s~-----------~~~~g~~AkLida---------YY~lEY~v~~p~--e~~RH~ls~v~V~~nG~~gkLYTltaq~~E  238 (258)
                      ...           ....++.|+|+++         ||++||.++.++  ++.||+|++++|. |   ||||||++|++|
T Consensus        81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~-~---gkLY~l~~~a~e  156 (177)
T 1v2b_A           81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVN-D---GKLYICKAQAGD  156 (177)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEE-T---TEEEEEEEEEEG
T ss_pred             HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEE-C---CEEEEEEEecCH
Confidence            211           1122488999999         999999999987  3689999999997 4   499999999999


Q ss_pred             hhhHH-hhHHHHHHhcceeeC
Q 025061          239 EESEK-YGSNIEKAVASFRFI  258 (258)
Q Consensus       239 ~rw~K-~k~~l~~Vv~SF~v~  258 (258)
                      +||+| +++.|++|++||+|.
T Consensus       157 ~~W~k~~~~~l~~v~~SF~v~  177 (177)
T 1v2b_A          157 KRWFKGAKKFVENTATSFSLA  177 (177)
T ss_dssp             GGCSTTTTHHHHHHHHTCEEC
T ss_pred             HHhhhhHHHHHHHHHhheecC
Confidence            99999 599999999999983

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.02  E-value=0.0001  Score=60.44  Aligned_cols=134  Identities=13%  Similarity=0.160  Sum_probs=82.6

Q ss_pred             ceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCC-CCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccC
Q 025061          104 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQE-ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRS  182 (258)
Q Consensus       104 f~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~-~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s  182 (258)
                      ...|.  -+.++|..|.||+.-..  +    |..+.++. .++-|+.|...+++++       .+.+++.++-++.+...
T Consensus         3 m~~y~--~~Egsl~lP~gw~D~t~--n----v~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~~   67 (148)
T 1tu1_A            3 MTLYR--LHEADLEIPDAWQDQSI--N----IFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ   67 (148)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB--E----EEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH
T ss_pred             CceEE--ECCEEEeCCCCcEeeeE--E----EEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHhh
Confidence            45677  88999999999992221  1    22222222 1114555555565544       35566665554443210


Q ss_pred             ---CCCCCCccceeeee-EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061          183 ---WRRPPGVAAKLIDW-FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  257 (258)
Q Consensus       183 ---~~~~~g~~AkLida-YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v  257 (258)
                         ++.-....+++-+. --.+||+-..++ +.+|.+-++.+- .+   ++|.++..++...|+..+..++.|++||++
T Consensus        68 l~~y~~~~~~~~~l~g~~a~~~e~~~~~~g-~~~~Q~q~~~~~-~~---~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A           68 LPGFKLHKRWDINIHGHAAVLLDYQWQREG-RDLMLRQVFIER-RP---AVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             STTCEEEEEEEEEETTEEEEEEEEEEEETT-EEEEEEEEEECC-SS---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             CcCcEEeeeEeEEEcCCcEEEEEEEEccCC-EEEEEEEEEEEE-CC---eEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence               11111112222111 456666666655 478998887764 33   999999999999999999999999999985

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=96.56  E-value=0.099  Score=44.23  Aligned_cols=128  Identities=14%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             CceEEEccCCCcccccCCCCcceEEEecCC--CCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccCCCCCCCc
Q 025061          112 NKFEISIPQDWQLGAGEPNGFKSITAFYPQ--EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGV  189 (258)
Q Consensus       112 dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~--~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s~~~~~g~  189 (258)
                      -++++-.|.||......  |. -+.+=++.  ..=..||-|.+.-.+.|+     |   ++.-..|.+.+..    -++.
T Consensus        18 p~~~v~~P~gWe~~~~~--~~-~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~~----lp~~   82 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTM--GT-QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRATQ----LPDY   82 (161)
T ss_dssp             CEEEEECCTTEEECTTS--SS-SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHTT----STTC
T ss_pred             ceeeccCCCCceEcCCC--Cc-eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHhh----CCCc
Confidence            37889999999988643  22 12222232  233679999998776553     2   4433333332210    1222


Q ss_pred             cc---eeeee----EEEEEEEEeCCCCCceeE--EEEEEEecCCccceEEEE--EcccCchhhHHhhHHHHHHhcceeeC
Q 025061          190 AA---KLIDW----FYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIEKAVASFRFI  258 (258)
Q Consensus       190 ~A---kLida----YY~lEY~v~~p~e~~RH~--ls~v~V~~nG~~gkLYTl--taq~~E~rw~K~k~~l~~Vv~SF~v~  258 (258)
                      .-   ...+.    -|.+||.-+.+.. ..+.  +..+.|.++|   ..|.+  ++++.+..-+.+.+.++++++|++|.
T Consensus        83 ~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~---v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~  158 (161)
T 3lyd_A           83 AERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPH---AVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ  158 (161)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSS---CEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred             EeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCC---EEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence            21   11222    8999998888764 3452  5677888776   55555  99999999999999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	4e-17

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 74.3 bits (182), Expect = 4e-17
 Identities = 33/177 (18%), Positives = 54/177 (30%), Gaps = 32/177 (18%)

Query: 103 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRM 162
           D + Y    + F++ IP  W     E      +  F     ++S+V V IT    D   +
Sbjct: 2   DFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSI 56

Query: 163 ESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLID---------WFYYIEY 202
             FG  E F   +   L R                    A +++          +YY+  
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI 116

Query: 203 TLQNP--GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 256
             +     E  KH      +       +LY    Q  ++   K     +E    SF 
Sbjct: 117 LTRTADGNEGGKHQLVTATV----NDGKLYICKAQAGDKRWFKGAKKFVENTATSFS 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.35

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.3e-37  Score=259.00  Aligned_cols=146  Identities=23%  Similarity=0.354  Sum_probs=120.6

Q ss_pred             cCceeeeeCCCceEEEccCCCcccccC-CCCcceEEEecCCCCCCceEEEEEEcCCCCccccccCCCHHHHHHHHHhccc
Q 025061          102 NDLRVYTDELNKFEISIPQDWQLGAGE-PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD  180 (258)
Q Consensus       102 ~gf~~y~D~~dGYsFlyPsgW~~v~g~-~~G~k~V~~F~d~~~~~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~  180 (258)
                      ++|++|.|  |||+|+||+||.++... ..|.  .++|+|+.+.++||+|+|+|+  ++++|++||+|+++++++...+.
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~--d~~f~d~~~~~~nv~V~v~p~--~~~sl~~~G~p~~~~~~v~~~l~   74 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQ--VLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLG   74 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTE--EEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCc--eEEEeccccCCceEEEEEecC--CCcchhhccChHHHHHHHHHHHh
Confidence            47999996  89999999999877543 2344  558999999999999999987  57899999999999999987775


Q ss_pred             cCC-----------CCCCCccceeeee---------EEEEEEEEeCCC--CCceeEEEEEEEecCCccceEEEEEcccCc
Q 025061          181 RSW-----------RRPPGVAAKLIDW---------FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVE  238 (258)
Q Consensus       181 ~s~-----------~~~~g~~AkLida---------YY~lEY~v~~p~--e~~RH~ls~v~V~~nG~~gkLYTltaq~~E  238 (258)
                      +.+           ...+++.|+|+++         ||+|||.++.|+  ++.||+|++++|.+    ||||||++|+||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~----grLYtl~~~~pe  150 (171)
T d1v2ba_          75 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGD  150 (171)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEG
T ss_pred             hhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeC----CEEEEEEEecCH
Confidence            432           1234788999998         999999999874  56899999999974    499999999999


Q ss_pred             hhhHH-hhHHHHHHhcceee
Q 025061          239 EESEK-YGSNIEKAVASFRF  257 (258)
Q Consensus       239 ~rw~K-~k~~l~~Vv~SF~v  257 (258)
                      ++|+| +++.|++||+||+|
T Consensus       151 ~~w~~~~~~~l~~~v~SF~v  170 (171)
T d1v2ba_         151 KRWFKGAKKFVENTATSFSL  170 (171)
T ss_dssp             GGCSTTTTHHHHHHHHTCEE
T ss_pred             HHhhhhhHHHHHHHHhceEe
Confidence            99998 57789999999997

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.35  E-value=8.5e-06  Score=64.10  Aligned_cols=134  Identities=11%  Similarity=0.136  Sum_probs=87.0

Q ss_pred             ceeeeeCCCceEEEccCCCcccccCCCCcceEEEecCCCCC-CceEEEEEEcCCCCccccccCCCHHHHHHHHHhccccC
Q 025061          104 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEAS-SSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRS  182 (258)
Q Consensus       104 f~~y~D~~dGYsFlyPsgW~~v~g~~~G~k~V~~F~d~~~~-~eNVSVvItpv~~d~~sL~dfGsp~evae~Lv~~~~~s  182 (258)
                      ...|.  -..=+|.+|.||+.-..      .|+++.+.... .-|+.|...+++++       .+++++.++.+..+.+.
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~------ni~~~~~~~~~~~~~lvIsr~~l~~~-------~~l~~~~~~~~~~l~~~   67 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI------NIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ   67 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB------EEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH
T ss_pred             CceeE--EcCEEEeCCCCceeCcc------eEEEecCCCCCcceEEEEEeecCCCC-------CCHHHHHHHHHHHHHhh
Confidence            34555  23338999999973322      14444443322 34555555565444       47888888888877432


Q ss_pred             CCC---CCCccceeeee-EEEEEEEEeCCCCCceeEEEEEEEecCCccceEEEEEcccCchhhHHhhHHHHHHhcceee
Q 025061          183 WRR---PPGVAAKLIDW-FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  257 (258)
Q Consensus       183 ~~~---~~g~~AkLida-YY~lEY~v~~p~e~~RH~ls~v~V~~nG~~gkLYTltaq~~E~rw~K~k~~l~~Vv~SF~v  257 (258)
                      .+.   -+-..++|-+. -+.+||+-..++. ..|..-++.+- +|   +.|+|+..++...++..++.++++++||+.
T Consensus        68 l~~~~~~~~~~~~l~g~pa~~~~~t~~~~~~-~v~Q~q~~~~~-~~---~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p  141 (144)
T d1tu1a_          68 LPGFKLHKRWDINIHGHAAVLLDYQWQREGR-DLMLRQVFIER-RP---AVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (144)
T ss_dssp             STTCEEEEEEEEEETTEEEEEEEEEEEETTE-EEEEEEEEECC-SS---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             CCCcEEEeeEecccCCCcEEEEEEEEeeCCE-eEEEEEEEEEe-CC---CEEEEEEecCCcCCHHHHHHHHHHHHhCcc
Confidence            100   00112222222 7889999887764 67887776664 44   889999999999999999999999999974