Citrus Sinensis ID: 025076
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 258 | ||||||
| 255543276 | 264 | conserved hypothetical protein [Ricinus | 0.976 | 0.954 | 0.737 | 1e-105 | |
| 224053605 | 235 | predicted protein [Populus trichocarpa] | 0.910 | 1.0 | 0.797 | 7e-99 | |
| 225425326 | 264 | PREDICTED: TVP38/TMEM64 family membrane | 0.918 | 0.897 | 0.723 | 9e-98 | |
| 296085555 | 493 | unnamed protein product [Vitis vinifera] | 0.910 | 0.476 | 0.733 | 7e-97 | |
| 225425324 | 264 | PREDICTED: TVP38/TMEM64 family membrane | 0.918 | 0.897 | 0.707 | 1e-96 | |
| 449446797 | 260 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.980 | 0.701 | 8e-95 | |
| 356569091 | 239 | PREDICTED: TVP38/TMEM64 family membrane | 0.810 | 0.874 | 0.727 | 2e-86 | |
| 388494950 | 238 | unknown [Lotus japonicus] | 0.802 | 0.869 | 0.729 | 5e-86 | |
| 7767655 | 280 | F27F5.5 [Arabidopsis thaliana] | 0.895 | 0.825 | 0.649 | 3e-85 | |
| 22330026 | 261 | SNARE associated Golgi protein family [A | 0.895 | 0.885 | 0.649 | 4e-85 |
| >gi|255543276|ref|XP_002512701.1| conserved hypothetical protein [Ricinus communis] gi|223548662|gb|EEF50153.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/263 (73%), Positives = 224/263 (85%), Gaps = 11/263 (4%)
Query: 5 KWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIAL 64
KW K+G ++G++AI RE+ K G+ DK+ +K EWSD LG+WA+P++VG HTLT+AL
Sbjct: 4 KWWKVGAILGIVAIGRELIKQTGW--DKEAALKVFAEWSDGLGIWAMPIYVGIHTLTLAL 61
Query: 65 CLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYF 124
CLPYAVFFEAAA LLFGF PAVLCVFSAKLLGASLSFWIGRLVF+SS+SAMEWAQRNKYF
Sbjct: 62 CLPYAVFFEAAAPLLFGFMPAVLCVFSAKLLGASLSFWIGRLVFRSSSSAMEWAQRNKYF 121
Query: 125 HILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTS 184
H+LS+GVE+DGW+FV+LARFSPMPSYVINYALAAT V F+VDFLLPTIIGCLPMILQNTS
Sbjct: 122 HLLSKGVEQDGWRFVLLARFSPMPSYVINYALAATKVEFLVDFLLPTIIGCLPMILQNTS 181
Query: 185 IGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVAE-SPSDIVAD 243
IGSLAGAAVAS S S KS+VWSYLFPLLGI+SSILIS RIKKYS+DIT+ E SPS+ D
Sbjct: 182 IGSLAGAAVASTSGSQKSKVWSYLFPLLGIISSILISMRIKKYSSDITMVESSPSNHTTD 241
Query: 244 SSH--------GKTGREGLKKSQ 258
S+ G TG +GLKKS+
Sbjct: 242 SNDVDSSKDLSGNTGGDGLKKSR 264
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053605|ref|XP_002297894.1| predicted protein [Populus trichocarpa] gi|222845152|gb|EEE82699.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225425326|ref|XP_002273831.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296085555|emb|CBI29287.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225425324|ref|XP_002273872.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449446797|ref|XP_004141157.1| PREDICTED: uncharacterized protein LOC101209858 [Cucumis sativus] gi|449528000|ref|XP_004170995.1| PREDICTED: uncharacterized protein LOC101229874 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356569091|ref|XP_003552739.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|388494950|gb|AFK35541.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|7767655|gb|AAF69152.1|AC007915_4 F27F5.5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|22330026|ref|NP_175116.2| SNARE associated Golgi protein family [Arabidopsis thaliana] gi|8656006|gb|AAF78279.1|AC020576_23 Contains similarity to unknown protein F27F5.5 gi|7767655 from Arabidopsis thaliana F27F5 gb|AC007915 and contains a DedA PF|00597 domain. EST gb|T44906 comes from this gene [Arabidopsis thaliana] gi|18176198|gb|AAL60002.1| unknown protein [Arabidopsis thaliana] gi|22136750|gb|AAM91694.1| unknown protein [Arabidopsis thaliana] gi|332193947|gb|AEE32068.1| SNARE associated Golgi protein family [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 258 | ||||||
| TAIR|locus:2028270 | 261 | AT1G44960 "AT1G44960" [Arabido | 0.984 | 0.973 | 0.577 | 8.1e-76 | |
| UNIPROTKB|Q3ABR1 | 219 | CHY_1595 "Putative membrane pr | 0.658 | 0.776 | 0.254 | 3e-06 | |
| TIGR_CMR|CHY_1595 | 219 | CHY_1595 "putative membrane pr | 0.658 | 0.776 | 0.254 | 3e-06 | |
| TAIR|locus:2017769 | 344 | AT1G22850 "AT1G22850" [Arabido | 0.635 | 0.476 | 0.248 | 8.2e-06 | |
| GENEDB_PFALCIPARUM|MAL13P1.329 | 408 | MAL13P1.329 "hypothetical prot | 0.751 | 0.475 | 0.230 | 1.5e-05 | |
| UNIPROTKB|Q8ID52 | 408 | MAL13P1.329 "Uncharacterized p | 0.751 | 0.475 | 0.230 | 1.5e-05 | |
| UNIPROTKB|Q74DK2 | 226 | GSU1314 "Membrane protein, put | 0.472 | 0.539 | 0.265 | 1.9e-05 | |
| TIGR_CMR|GSU_1314 | 226 | GSU_1314 "membrane protein, pu | 0.472 | 0.539 | 0.265 | 1.9e-05 | |
| TAIR|locus:2014530 | 274 | AT1G03260 [Arabidopsis thalian | 0.751 | 0.708 | 0.219 | 1.9e-05 | |
| ASPGD|ASPL0000012431 | 410 | AN3579 [Emericella nidulans (t | 0.554 | 0.348 | 0.272 | 4.4e-05 |
| TAIR|locus:2028270 AT1G44960 "AT1G44960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 152/263 (57%), Positives = 187/263 (71%)
Query: 3 MGKWLKIGMVVGVIAII-REVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLT 61
M KWL I V +IAII R+ + YG+ +K+ ++ ++EWSDRLG+WAIP +V HT+T
Sbjct: 1 MKKWLAIAATVAIIAIIVRQGTTQYGW--NKEAALEKLKEWSDRLGIWAIPTYVAVHTIT 58
Query: 62 IALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRN 121
+ALCLP+AVFFEA AS+LFGF PA+LCVFSAK+L AS SFWIGR VFKSS A WA N
Sbjct: 59 LALCLPHAVFFEAGASMLFGFLPALLCVFSAKVLAASFSFWIGRFVFKSSTRATGWAHSN 118
Query: 122 KYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQ 181
KYF+ILSRGVE+DGWKFV+LARFSP+PSYVINYALAAT V FV DFL PT+IGCLPMILQ
Sbjct: 119 KYFNILSRGVERDGWKFVLLARFSPIPSYVINYALAATEVRFVADFLFPTVIGCLPMILQ 178
Query: 182 NTXXXXXXXXXXXXXXXXXXXXXXXYLFPLLGIVSSILISFRIKKYSTDITVAESP---- 237
N Y+FP+LGI+SS+LIS RIKKYS IT A S
Sbjct: 179 NASVGSLAGMAVASVAGKQKSQVWGYVFPVLGILSSVLISLRIKKYSAGITEASSDTSAN 238
Query: 238 -SDIVA-DSSHGKTGREGLKKSQ 258
S + + ++++ G +G KKS+
Sbjct: 239 NSSLASSETANPAYGTDGSKKSE 261
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| UNIPROTKB|Q3ABR1 CHY_1595 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_1595 CHY_1595 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| GENEDB_PFALCIPARUM|MAL13P1.329 MAL13P1.329 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8ID52 MAL13P1.329 "Uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q74DK2 GSU1314 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_1314 GSU_1314 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000012431 AN3579 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.I.8047.1 | hypothetical protein (235 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 258 | |||
| pfam09335 | 123 | pfam09335, SNARE_assoc, SNARE associated Golgi pro | 4e-17 | |
| COG0398 | 223 | COG0398, COG0398, Uncharacterized conserved protei | 3e-10 | |
| COG0586 | 208 | COG0586, DedA, Uncharacterized membrane-associated | 3e-04 |
| >gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein | Back alignment and domain information |
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Score = 74.6 bits (184), Expect = 4e-17
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 66 LPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSS-NSAMEWAQRNKYF 124
LP V AA LFG + L LLG+ L++ +GR + + + + + +
Sbjct: 1 LPGTVLL-IAAGALFGPWLGFLVALLGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRL 59
Query: 125 HILSRGVEKDGWKFVVLARFSP-MPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNT 183
+ R VE+ G+K ++L R P +P ++NY + V F FLL T +G LP L
Sbjct: 60 QRVERLVERYGFKALLLLRLLPGVPRDLVNYVAGLSRVSF-RRFLLGTFLGILPWALLYV 118
Query: 184 SIGSL 188
+GSL
Sbjct: 119 YLGSL 123
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This is a family of SNARE associated Golgi proteins. The yeast member of this family localises with the t-SNARE Tlg2. Length = 123 |
| >gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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| >gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 258 | |||
| COG0398 | 223 | Uncharacterized conserved protein [Function unknow | 100.0 | |
| COG0586 | 208 | DedA Uncharacterized membrane-associated protein [ | 99.94 | |
| PRK10847 | 219 | hypothetical protein; Provisional | 99.92 | |
| PF09335 | 123 | SNARE_assoc: SNARE associated Golgi protein; Inter | 99.88 | |
| KOG3140 | 275 | consensus Predicted membrane protein [Function unk | 99.72 | |
| COG1238 | 161 | Predicted membrane protein [Function unknown] | 99.56 | |
| PF06695 | 121 | Sm_multidrug_ex: Putative small multi-drug export | 97.1 | |
| PRK01844 | 72 | hypothetical protein; Provisional | 86.65 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 83.48 | |
| PRK00523 | 72 | hypothetical protein; Provisional | 81.59 |
| >COG0398 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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Probab=100.00 E-value=3.8e-31 Score=228.61 Aligned_cols=153 Identities=25% Similarity=0.441 Sum_probs=142.9
Q ss_pred CchhhHHHHHHHHHHcCchHHHH-HHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 025076 31 DKDTGIKAIREWSDRLGVWAIPV-FVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFK 109 (258)
Q Consensus 31 ~~~~~~~~l~~~~~~~g~~~~~i-~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~ 109 (258)
...++.+.+++|++++|.+++++ |++.++...++++|+++ +++++|++||++.|++++++|+++|+.++|+++|++|+
T Consensus 30 ~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr 108 (223)
T COG0398 30 VLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR 108 (223)
T ss_pred HhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45678999999999999999988 66667777888899986 79999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHH
Q 025076 110 SSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGS 187 (258)
Q Consensus 110 ~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~ 187 (258)
+..+ +.++++++.+++++..+|+|+..+++.|++|+ |++++||++|++++++ ++|.++|.+|++|++++|+++|+
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~-~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 109 DWVL--KFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISF-RDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHH--HHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcH-HHHHHHHHHhcccHHHHHHHHHH
Confidence 9887 67777789999999999999999999999996 9999999999999999 99999999999999999999997
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| >COG0586 DedA Uncharacterized membrane-associated protein [Function unknown] | Back alignment and domain information |
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| >PRK10847 hypothetical protein; Provisional | Back alignment and domain information |
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| >PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins | Back alignment and domain information |
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| >KOG3140 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >COG1238 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins | Back alignment and domain information |
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| >PRK01844 hypothetical protein; Provisional | Back alignment and domain information |
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| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
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| >PRK00523 hypothetical protein; Provisional | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00