Citrus Sinensis ID: 025076


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MGMGKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVAESPSDIVADSSHGKTGREGLKKSQ
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccc
MGMGKWLKIGMVVGVIAIIREVSkhygfgfdkdtGIKAIREWSdrlgvwaipvFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPtiigclpmilqntsigsLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKystditvaespsdivadsshgktgreglkksq
mgmgkwlkIGMVVGVIAIIREVSkhygfgfdkDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTditvaespsdivadsshgktgreglkksq
MGMGKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTsigslagaavasassswksqvwsYLFPLLGIVSSILISFRIKKYSTDITVAESPSDIVADSSHGKTGREGLKKSQ
****KWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITV*************************
***GKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKK********************************
MGMGKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSL*************SQVWSYLFPLLGIVSSILISFRIKKYSTDITVAESPSDIVA****************
**MGKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVAES**********************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGMGKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVAESPSDIVADSSHGKTGREGLKKSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q55909209 TVP38/TMEM64 family membr N/A no 0.686 0.846 0.276 2e-12
P67118252 TVP38/TMEM64 family membr yes no 0.515 0.527 0.3 5e-05
P67117252 TVP38/TMEM64 family membr yes no 0.515 0.527 0.3 5e-05
>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1 Back     alignment and function desciption
 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 15/192 (7%)

Query: 41  EWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLS 100
           +W D LG WA   F+  +T+   + LP ++     A ++FG     + VF    LGA+ +
Sbjct: 10  QWIDGLGTWAAIAFMLLYTVATVVFLPGSI-LTLGAGVVFGVILGSIYVFIGATLGATAA 68

Query: 101 FWIGRLVFKSSNSAMEWAQR----NKYFHILSRGVEKDGWKFVVLARFSPM-PSYVINYA 155
           F +GR +      A  W  +    N+ F  +   V K+G K V+L R SP+ P  ++NYA
Sbjct: 69  FLVGRYL------ARGWVAKKIAGNQKFKAIDEAVGKEGLKIVILTRLSPVFPFNLLNYA 122

Query: 156 LAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGA-AVASASSSWKSQVWSYLFPLLGI 214
              TNV    D+++ + +G +P  +    IGSLAG+ A    +++  +    +   ++G 
Sbjct: 123 YGITNVSL-KDYVIGS-LGMIPGTIMYVYIGSLAGSLATLGTATNQANPTLQWTIRIVGF 180

Query: 215 VSSILISFRIKK 226
           ++++ ++  + K
Sbjct: 181 IATVAVTIYVTK 192





Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
>sp|P67118|Y1528_MYCBO TVP38/TMEM64 family membrane protein Mb1528c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1528c PE=3 SV=1 Back     alignment and function description
>sp|P67117|Y1491_MYCTU TVP38/TMEM64 family membrane protein Rv1491c/MT1538 OS=Mycobacterium tuberculosis GN=Rv1491c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
255543276264 conserved hypothetical protein [Ricinus 0.976 0.954 0.737 1e-105
224053605235 predicted protein [Populus trichocarpa] 0.910 1.0 0.797 7e-99
225425326264 PREDICTED: TVP38/TMEM64 family membrane 0.918 0.897 0.723 9e-98
296085555 493 unnamed protein product [Vitis vinifera] 0.910 0.476 0.733 7e-97
225425324264 PREDICTED: TVP38/TMEM64 family membrane 0.918 0.897 0.707 1e-96
449446797260 PREDICTED: uncharacterized protein LOC10 0.988 0.980 0.701 8e-95
356569091239 PREDICTED: TVP38/TMEM64 family membrane 0.810 0.874 0.727 2e-86
388494950238 unknown [Lotus japonicus] 0.802 0.869 0.729 5e-86
7767655280 F27F5.5 [Arabidopsis thaliana] 0.895 0.825 0.649 3e-85
22330026261 SNARE associated Golgi protein family [A 0.895 0.885 0.649 4e-85
>gi|255543276|ref|XP_002512701.1| conserved hypothetical protein [Ricinus communis] gi|223548662|gb|EEF50153.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/263 (73%), Positives = 224/263 (85%), Gaps = 11/263 (4%)

Query: 5   KWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLTIAL 64
           KW K+G ++G++AI RE+ K  G+  DK+  +K   EWSD LG+WA+P++VG HTLT+AL
Sbjct: 4   KWWKVGAILGIVAIGRELIKQTGW--DKEAALKVFAEWSDGLGIWAMPIYVGIHTLTLAL 61

Query: 65  CLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYF 124
           CLPYAVFFEAAA LLFGF PAVLCVFSAKLLGASLSFWIGRLVF+SS+SAMEWAQRNKYF
Sbjct: 62  CLPYAVFFEAAAPLLFGFMPAVLCVFSAKLLGASLSFWIGRLVFRSSSSAMEWAQRNKYF 121

Query: 125 HILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTS 184
           H+LS+GVE+DGW+FV+LARFSPMPSYVINYALAAT V F+VDFLLPTIIGCLPMILQNTS
Sbjct: 122 HLLSKGVEQDGWRFVLLARFSPMPSYVINYALAATKVEFLVDFLLPTIIGCLPMILQNTS 181

Query: 185 IGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVAE-SPSDIVAD 243
           IGSLAGAAVAS S S KS+VWSYLFPLLGI+SSILIS RIKKYS+DIT+ E SPS+   D
Sbjct: 182 IGSLAGAAVASTSGSQKSKVWSYLFPLLGIISSILISMRIKKYSSDITMVESSPSNHTTD 241

Query: 244 SSH--------GKTGREGLKKSQ 258
           S+         G TG +GLKKS+
Sbjct: 242 SNDVDSSKDLSGNTGGDGLKKSR 264




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053605|ref|XP_002297894.1| predicted protein [Populus trichocarpa] gi|222845152|gb|EEE82699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425326|ref|XP_002273831.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085555|emb|CBI29287.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425324|ref|XP_002273872.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449446797|ref|XP_004141157.1| PREDICTED: uncharacterized protein LOC101209858 [Cucumis sativus] gi|449528000|ref|XP_004170995.1| PREDICTED: uncharacterized protein LOC101229874 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356569091|ref|XP_003552739.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max] Back     alignment and taxonomy information
>gi|388494950|gb|AFK35541.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|7767655|gb|AAF69152.1|AC007915_4 F27F5.5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22330026|ref|NP_175116.2| SNARE associated Golgi protein family [Arabidopsis thaliana] gi|8656006|gb|AAF78279.1|AC020576_23 Contains similarity to unknown protein F27F5.5 gi|7767655 from Arabidopsis thaliana F27F5 gb|AC007915 and contains a DedA PF|00597 domain. EST gb|T44906 comes from this gene [Arabidopsis thaliana] gi|18176198|gb|AAL60002.1| unknown protein [Arabidopsis thaliana] gi|22136750|gb|AAM91694.1| unknown protein [Arabidopsis thaliana] gi|332193947|gb|AEE32068.1| SNARE associated Golgi protein family [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2028270261 AT1G44960 "AT1G44960" [Arabido 0.984 0.973 0.577 8.1e-76
UNIPROTKB|Q3ABR1219 CHY_1595 "Putative membrane pr 0.658 0.776 0.254 3e-06
TIGR_CMR|CHY_1595219 CHY_1595 "putative membrane pr 0.658 0.776 0.254 3e-06
TAIR|locus:2017769344 AT1G22850 "AT1G22850" [Arabido 0.635 0.476 0.248 8.2e-06
GENEDB_PFALCIPARUM|MAL13P1.329408 MAL13P1.329 "hypothetical prot 0.751 0.475 0.230 1.5e-05
UNIPROTKB|Q8ID52408 MAL13P1.329 "Uncharacterized p 0.751 0.475 0.230 1.5e-05
UNIPROTKB|Q74DK2226 GSU1314 "Membrane protein, put 0.472 0.539 0.265 1.9e-05
TIGR_CMR|GSU_1314226 GSU_1314 "membrane protein, pu 0.472 0.539 0.265 1.9e-05
TAIR|locus:2014530274 AT1G03260 [Arabidopsis thalian 0.751 0.708 0.219 1.9e-05
ASPGD|ASPL0000012431410 AN3579 [Emericella nidulans (t 0.554 0.348 0.272 4.4e-05
TAIR|locus:2028270 AT1G44960 "AT1G44960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 152/263 (57%), Positives = 187/263 (71%)

Query:     3 MGKWLKIGMVVGVIAII-REVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTLT 61
             M KWL I   V +IAII R+ +  YG+  +K+  ++ ++EWSDRLG+WAIP +V  HT+T
Sbjct:     1 MKKWLAIAATVAIIAIIVRQGTTQYGW--NKEAALEKLKEWSDRLGIWAIPTYVAVHTIT 58

Query:    62 IALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRN 121
             +ALCLP+AVFFEA AS+LFGF PA+LCVFSAK+L AS SFWIGR VFKSS  A  WA  N
Sbjct:    59 LALCLPHAVFFEAGASMLFGFLPALLCVFSAKVLAASFSFWIGRFVFKSSTRATGWAHSN 118

Query:   122 KYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQ 181
             KYF+ILSRGVE+DGWKFV+LARFSP+PSYVINYALAAT V FV DFL PT+IGCLPMILQ
Sbjct:   119 KYFNILSRGVERDGWKFVLLARFSPIPSYVINYALAATEVRFVADFLFPTVIGCLPMILQ 178

Query:   182 NTXXXXXXXXXXXXXXXXXXXXXXXYLFPLLGIVSSILISFRIKKYSTDITVAESP---- 237
             N                        Y+FP+LGI+SS+LIS RIKKYS  IT A S     
Sbjct:   179 NASVGSLAGMAVASVAGKQKSQVWGYVFPVLGILSSVLISLRIKKYSAGITEASSDTSAN 238

Query:   238 -SDIVA-DSSHGKTGREGLKKSQ 258
              S + + ++++   G +G KKS+
Sbjct:   239 NSSLASSETANPAYGTDGSKKSE 261




GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|Q3ABR1 CHY_1595 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1595 CHY_1595 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|MAL13P1.329 MAL13P1.329 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8ID52 MAL13P1.329 "Uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q74DK2 GSU1314 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1314 GSU_1314 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012431 AN3579 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.I.8047.1
hypothetical protein (235 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
pfam09335123 pfam09335, SNARE_assoc, SNARE associated Golgi pro 4e-17
COG0398223 COG0398, COG0398, Uncharacterized conserved protei 3e-10
COG0586208 COG0586, DedA, Uncharacterized membrane-associated 3e-04
>gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein Back     alignment and domain information
 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 66  LPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSS-NSAMEWAQRNKYF 124
           LP  V    AA  LFG +   L      LLG+ L++ +GR + + +    +   +  +  
Sbjct: 1   LPGTVLL-IAAGALFGPWLGFLVALLGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRL 59

Query: 125 HILSRGVEKDGWKFVVLARFSP-MPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNT 183
             + R VE+ G+K ++L R  P +P  ++NY    + V F   FLL T +G LP  L   
Sbjct: 60  QRVERLVERYGFKALLLLRLLPGVPRDLVNYVAGLSRVSF-RRFLLGTFLGILPWALLYV 118

Query: 184 SIGSL 188
            +GSL
Sbjct: 119 YLGSL 123


This is a family of SNARE associated Golgi proteins. The yeast member of this family localises with the t-SNARE Tlg2. Length = 123

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
COG0398223 Uncharacterized conserved protein [Function unknow 100.0
COG0586208 DedA Uncharacterized membrane-associated protein [ 99.94
PRK10847219 hypothetical protein; Provisional 99.92
PF09335123 SNARE_assoc: SNARE associated Golgi protein; Inter 99.88
KOG3140275 consensus Predicted membrane protein [Function unk 99.72
COG1238161 Predicted membrane protein [Function unknown] 99.56
PF06695121 Sm_multidrug_ex: Putative small multi-drug export 97.1
PRK0184472 hypothetical protein; Provisional 86.65
PRK11281 1113 hypothetical protein; Provisional 83.48
PRK0052372 hypothetical protein; Provisional 81.59
>COG0398 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=3.8e-31  Score=228.61  Aligned_cols=153  Identities=25%  Similarity=0.441  Sum_probs=142.9

Q ss_pred             CchhhHHHHHHHHHHcCchHHHH-HHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 025076           31 DKDTGIKAIREWSDRLGVWAIPV-FVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFK  109 (258)
Q Consensus        31 ~~~~~~~~l~~~~~~~g~~~~~i-~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~  109 (258)
                      ...++.+.+++|++++|.+++++ |++.++...++++|+++ +++++|++||++.|++++++|+++|+.++|+++|++|+
T Consensus        30 ~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr  108 (223)
T COG0398          30 VLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR  108 (223)
T ss_pred             HhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            45678999999999999999988 66667777888899986 79999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHH
Q 025076          110 SSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGS  187 (258)
Q Consensus       110 ~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~  187 (258)
                      +..+  +.++++++.+++++..+|+|+..+++.|++|+ |++++||++|++++++ ++|.++|.+|++|++++|+++|+
T Consensus       109 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~-~~f~ias~lG~~P~~i~y~~~G~  184 (223)
T COG0398         109 DWVL--KFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISF-RDFAIATLLGKLPGTIVYTYLGS  184 (223)
T ss_pred             HHHH--HHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcH-HHHHHHHHHhcccHHHHHHHHHH
Confidence            9887  67777789999999999999999999999996 9999999999999999 99999999999999999999997



>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown] Back     alignment and domain information
>PRK10847 hypothetical protein; Provisional Back     alignment and domain information
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins Back     alignment and domain information
>KOG3140 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG1238 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins Back     alignment and domain information
>PRK01844 hypothetical protein; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK00523 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00