Citrus Sinensis ID: 025077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEcccEEEEEEEccccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccEEEEEEEEEEcccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEcccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcccccccccEEEEEEEcccccEEEEEEEcccccccEEEEEEEcccccEEEEEEEcccEEEEEEccccHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEEccccccccccEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
msnspglyiDIGKKARDLLYkdygdkqpanhfrydcvdsnfdvscqcdaivpglstafrsiipdsggveLRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNtvlslgtdaafdistrtfsnynaglsFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFsnhrsisdnipiptsltvgfqhglfpsTLVKVRVntngkvgaHVQQSFWQKFSIAVSgetdirasswipnvrfgmafss
Flexible Loop (DISEMBL)
msnspglyiDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGEtdirasswipnvrfgmafss
Low Complexity Region (SEG)
MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFSS
Disordered region (IsUnstruct)
******LYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGM****
Disordered Region (DISOPRED)
***SPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNH****DNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS*
Disordered Region (DISEMBL)
MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFSS
Disordered Region (DISPRO)
****PGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
P42056	276	Mitochondrial outer membr	N/A	no	0.864	0.807	0.402	7e-43
P42055	276	Mitochondrial outer membr	N/A	no	0.906	0.847	0.391	2e-42
Q9SRH5	276	Mitochondrial outer membr	yes	no	0.914	0.855	0.363	9e-38
P46274	275	Mitochondrial outer membr	N/A	no	0.895	0.84	0.367	2e-36
Q9SMX3	274	Mitochondrial outer membr	no	no	0.906	0.854	0.353	8e-35
Q6K548	274	Mitochondrial outer membr	yes	no	0.844	0.795	0.371	2e-34
Q7F4F8	275	Mitochondrial outer membr	no	no	0.852	0.8	0.344	5e-33
P42054	276	Outer plastidial membrane	N/A	no	0.910	0.851	0.325	1e-31
P42057	277	Outer plastidial membrane	N/A	no	0.844	0.787	0.328	8e-29
Q0JJV1	317	Mitochondrial outer membr	no	no	0.841	0.684	0.333	8e-28

>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/281 (40%), Positives = 144/281 (51%), Gaps = 58/281 (20%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDC------------------------ 36
           M   PGLY DIGKKARDLLY+DY          Y                          
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 37  ----------VDSNFDV--SCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
                     VD+N +V  +   D   PGL T F  ++PD  SG VEL+YLH+YAG    
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 83  IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
           IGL A             +V FS VAGN  ++LGTD +FD +T  F+  NAGLSF+++  
Sbjct: 121 IGLTA-----------SPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDL 169

Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
            AS+ LNDK + + ASYY  + P+T TAV AEL HSFS++ +         +LT+G QH 
Sbjct: 170 IASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNEN---------TLTIGTQHL 220

Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
           L P T VK RVN+ GK  A +Q  +  K    +SGE D RA
Sbjct: 221 LDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRA 261

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.
Solanum tuberosum (taxid: 4113)

>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 146/296 (49%), Gaps = 62/296 (20%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDY-------------------------GD---------- 25
           M   PGLY +IGKKARDLLYKDY                         GD          
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 26  --KQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTA 81
             K      + D  +SN   +   D   PGL T     +PD  SG +E++YLHDYAG   
Sbjct: 61  KNKNVTTDIKVDT-NSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICT 119

Query: 82  GIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTAL 141
            +GL A           + IV FS V G  +++LGTD +FD  T  F+  NAGLSF  A 
Sbjct: 120 SVGLTA-----------NPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNAD 168

Query: 142 FNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201
             AS+NLN+K +NL ASYY  + PLT TAV AE+ HSFS + +I         +TVG QH
Sbjct: 169 LVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENI---------ITVGTQH 219

Query: 202 GLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
            L P T VK R+N  GK  A +Q  +  K    VSGE D +  S     +FG+A +
Sbjct: 220 RLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTK--SVDKGAKFGLALA 273

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 140/294 (47%), Gaps = 58/294 (19%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQ--------PA----------------------- 29
           M   PGLY +IGKKARDLLYKD+   Q        PA                       
Sbjct: 1   MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query: 30  --NHFRYD---CVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
              +   D   C DS F ++   D   PGL + F   +PD  SG VEL+YLH+YAG +  
Sbjct: 61  RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query: 83  IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
           +GL             +  V FS V G+ VL++GTD +FD  +  F+  NAGLSF     
Sbjct: 121 MGLTQ-----------NPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDL 169

Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
            AS+ +NDK + L ASYY  + PL  TAV AE+ H  S+  S         ++TVG QH 
Sbjct: 170 IASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDS---------TITVGTQHS 220

Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
           L P T VK RVN+ G   A +Q  +  K    +SGE D ++      V   +A 
Sbjct: 221 LDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALAL 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|P46274|VDAC1_WHEAT Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 140/291 (48%), Gaps = 60/291 (20%)

Query: 5   PGLYIDIGKKARDLLYKDY------------------------------GDKQPANHFRY 34
           PGLY  IGKKA+DLLY+DY                              G+ Q     + 
Sbjct: 4   PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKN 63

Query: 35  DCVD------SNFDVSCQCDAIV-PGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGL 85
             VD      SN   +   D +  PGL T     +PD  SG VEL+YLHDYAG  A IGL
Sbjct: 64  ITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGL 123

Query: 86  KAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNAS 145
            A           + +V  S   G + L++G D + D +T+ F+ YNA LS+      AS
Sbjct: 124 TA-----------NPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIAS 172

Query: 146 VNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFP 205
           +NLN+K ++L ASYY  +V  + TAV AEL HSFS++ +         SLT G QH L P
Sbjct: 173 LNLNNKGDSLTASYYH-IVEKSGTAVGAELTHSFSSNEN---------SLTFGTQHTLDP 222

Query: 206 STLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
            TLVK R+N +GK  A +Q  F  K    +S E D +A      V   +A 
Sbjct: 223 LTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIAL 273

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Triticum aestivum (taxid: 4565)

>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3

 Score =  147 bits (371), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 136/294 (46%), Gaps = 60/294 (20%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDY-GDKQ-------------------------------- 27
           M   PGLY +IGKKARDLLY+DY GD++                                
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 28  PANHFRYDC---VDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
             N+F  D     DS+   +   D   PGL    ++ +PD  SG  E++Y HDYAG +  
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 83  IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
           +G  A             IV FS V G   LSLGTD A++  +  F ++NAG +F     
Sbjct: 121 VGFTA-----------TPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDL 169

Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
            AS+ LNDK E L ASYYQ + P   T V AE+ H+F+   +         ++TVG QH 
Sbjct: 170 TASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKEN---------AITVGTQHA 218

Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
           L P T VK RVN  G   A +Q  +  K    VSGE D +A      V   +A 
Sbjct: 219 LDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALAL 272

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 135/277 (48%), Gaps = 59/277 (21%)

Query: 5   PGLYIDIGKKARDLLYKDY------------------------------GDKQPANHFRY 34
           PGLY +IGKKARDLLY+DY                              G+ Q     + 
Sbjct: 4   PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKN 63

Query: 35  DCVD------SNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGLK 86
             VD      SN   +   D + PGL +     +PD  SG  EL+Y HDYAG +A IGL 
Sbjct: 64  ITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLT 123

Query: 87  AGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASV 146
           A             +V  S V G   L++G D + D +T   + YNAGLSF+     AS+
Sbjct: 124 ASP-----------VVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASL 172

Query: 147 NLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS 206
           NLN+K ++L ASYY  +V  + TAV AEL HSFS++ +         SLT G QH L P 
Sbjct: 173 NLNNKGDSLTASYYH-IVNHSATAVGAELTHSFSSNEN---------SLTFGTQHTLDPL 222

Query: 207 TLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
           T+VK R N +GK  A +Q  +  K    +S E D +A
Sbjct: 223 TVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKA 259

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7F4F8|VDAC3_ORYSJ Mitochondrial outer membrane protein porin 3 OS=Oryza sativa subsp. japonica GN=VDAC3 PE=2 SV=1

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 130/279 (46%), Gaps = 59/279 (21%)

Query: 4   SPGLYIDIGKKARDLLYKDYGDKQP----------------------------ANHFRYD 35
           +PGLY DIGKK RDLLY+DYG                                    +  
Sbjct: 2   APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61

Query: 36  CVDSNFDVSCQCDAIV---------PGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIG 84
            +  +   + + D +          PGL +    ++PD  SG +EL+YLH+YAG  A +G
Sbjct: 62  KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121

Query: 85  LKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNA 144
           L +           + +V  S V G+  LS+G D AFD +T  F+ YNA LS   +   A
Sbjct: 122 LNS-----------NPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIA 170

Query: 145 SVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLF 204
           S++LN+  + L ASYY  +   + TAV AEL HSFS + S         +L  G QH L 
Sbjct: 171 SLHLNNHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNES---------TLIFGSQHSLD 221

Query: 205 PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
           P T VK R N  G   A VQ  +  K  I +SGE D +A
Sbjct: 222 PHTTVKARFNNYGMASALVQHEWRPKSLITISGEVDTKA 260

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 131/295 (44%), Gaps = 60/295 (20%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDY------------------------------GD----- 25
           M   PGLY DIGKKARDLLYKDY                              GD     
Sbjct: 1   MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60

Query: 26  --KQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTA 81
             K      + D  +SN   +   +   PG+       +P+  SG VEL+YLH+YAG ++
Sbjct: 61  KNKNITTDIKVDT-NSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISS 119

Query: 82  GIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTAL 141
            +GLKA           + IV FS V G   L+ G D +FD      +  NA ++F    
Sbjct: 120 SVGLKA-----------NPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDD 168

Query: 142 FNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201
              S+ LN+K + L ASYY  + PL+ TAV  ++ H FS   +         + T+G QH
Sbjct: 169 LIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKEN---------TFTLGTQH 219

Query: 202 GLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
            L P T VK RV  +GK  A +Q  +  K  I +S E D +A      +   +A 
Sbjct: 220 ALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLAL 274

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Pisum sativum (taxid: 3888)

>sp|P42057|VDAC_MAIZE Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 125/277 (45%), Gaps = 59/277 (21%)

Query: 6   GLYIDIGKKARDLLYKDYGDKQP--------------------------ANHFRYDCVDS 39
           GLY DIGKK RDLLYKDY   Q                             H +      
Sbjct: 6   GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKL 65

Query: 40  NFDVSCQCDAIV-----------PGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGLK 86
             DV    ++ +           PGL +    ++PD  SG +E +YLH+YAG  A +GL 
Sbjct: 66  TVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLN 125

Query: 87  AGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASV 146
           +           + +V  S   G+  LS+G D +FD +T  F+ YNA LS  +    AS+
Sbjct: 126 S-----------NPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASL 174

Query: 147 NLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS 206
           +LN+  + L ASYY  +   + TAV AEL HS S + S         +L  G QH L P 
Sbjct: 175 HLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNES---------TLIFGSQHSLDPH 225

Query: 207 TLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
           T +K R N  G   A VQ  +  K  + +SG+ D +A
Sbjct: 226 TTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKA 262

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Zea mays (taxid: 4577)

>sp|Q0JJV1|VDAC4_ORYSJ Mitochondrial outer membrane protein porin 4 OS=Oryza sativa subsp. japonica GN=VDAC4 PE=3 SV=3

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 127/276 (46%), Gaps = 59/276 (21%)

Query: 7   LYIDIGKKARDLLYKDYGDKQP---------------ANHFRYDCVDSN----------- 40
           LY +IGKKARDLLYKD+   Q                A+  + + + S            
Sbjct: 47  LYFEIGKKARDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQTKLKSNNVM 106

Query: 41  FDVSCQCDAIV-----------PGLSTAFRSIIP--DSGGVELRYLHDYAGFTAGIGLKA 87
            DV    D+ V            GL        P   +G  EL+YLHDYAG + G+GL +
Sbjct: 107 LDVKATSDSQVLTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLTS 166

Query: 88  GRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVN 147
                        +V  S V GN  +++G D A D ST  F+ Y+AGL+ N +   A + 
Sbjct: 167 -----------KPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLT 215

Query: 148 LNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPST 207
           LN+K ++L ASYY  +   + TA  AEL HSFS   +         +L+ G QH L P T
Sbjct: 216 LNNKGDSLTASYYHLVNKESGTAAGAELTHSFSTKEN---------TLSFGMQHALDPLT 266

Query: 208 LVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
            VK R N +G V A +Q  +  K  + +S E D +A
Sbjct: 267 TVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKA 302

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
224121532	249	porin/voltage-dependent anion-selective	0.957	0.991	0.484	8e-65
255540913	251	voltage-dependent anion-selective channe	0.910	0.936	0.504	1e-60
356512503	245	PREDICTED: mitochondrial outer membrane	0.887	0.934	0.442	1e-52
217073192	244	unknown [Medicago truncatula] gi|3884983	0.934	0.987	0.420	8e-52
357477441	244	Mitochondrial outer membrane protein por	0.934	0.987	0.416	3e-51
356562812	245	PREDICTED: mitochondrial outer membrane	0.887	0.934	0.430	5e-51
356507170	249	PREDICTED: mitochondrial outer membrane	0.937	0.971	0.412	2e-47
356516758	248	PREDICTED: mitochondrial outer membrane	0.934	0.971	0.419	1e-45
297734024	258	unnamed protein product [Vitis vinifera]	0.914	0.914	0.387	4e-45
225424908	276	PREDICTED: mitochondrial outer membrane	0.910	0.851	0.393	5e-42

>gi|224121532|ref|XP_002318608.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|222859281|gb|EEE96828.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 124/256 (48%), Positives = 169/256 (66%), Gaps = 9/256 (3%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           M   PGLY DIGKKARD+LYKDY  +QP  +F Y C   NFD+SC+   I+PGL+T FR 
Sbjct: 1   MGGCPGLYFDIGKKARDVLYKDYA-QQPPTYFNYQCFKWNFDLSCETQEILPGLTTVFRF 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            IPDS  VE+R++ +Y G T+G+G+KA +    +  G + IV FS V G+T+ SLGTD +
Sbjct: 60  TIPDSSNVEVRFMQNYFGITSGVGVKAYQQGSFKGNGYNPIVNFSGVIGSTLFSLGTDIS 119

Query: 121 FDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFS 180
           FDIS +TF  + AGLSFN+     S+ L+DKL+ L+AS Y+EL PLTRTA+AAELKHS  
Sbjct: 120 FDISAKTFDQFTAGLSFNSPFLITSLTLDDKLDTLKASCYRELNPLTRTAIAAELKHSSL 179

Query: 181 NHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
            + S        T+LT+G QH LFP TL+K R NT  K+   ++   W+K  ++++GE D
Sbjct: 180 LNGS--------TTLTIGAQHALFPFTLIKARANTEAKINTLIRLELWEKVLLSMNGEVD 231

Query: 241 IRASSWIPNVRFGMAF 256
            RA++ I  +   +A 
Sbjct: 232 CRATNKISKIGLSVAL 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540913|ref|XP_002511521.1| voltage-dependent anion-selective channel, putative [Ricinus communis] gi|223550636|gb|EEF52123.1| voltage-dependent anion-selective channel, putative [Ricinus communis]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/244 (50%), Positives = 160/244 (65%), Gaps = 9/244 (3%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS  PGLY DIGKKARDLLY DY    P  HF Y  +  NFD+SCQ   I+PG+ST FR 
Sbjct: 1   MSKGPGLYQDIGKKARDLLYGDYA-HHPRTHFGYKDIRWNFDLSCQTPEILPGVSTYFRF 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
           ++PDSG VELR+LH+Y G  AG+G+K+      +  G   +V  S VAGNT+ SLGTD  
Sbjct: 60  LVPDSGRVELRFLHEYFGIAAGVGVKSYEEGSFKGDGYFPVVNLSGVAGNTLFSLGTDIT 119

Query: 121 FDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFS 180
           F+++  +F  ++AG+SFN+    +SVNL+DKL+ ++AS Y     LTRTAVAAELKH+FS
Sbjct: 120 FNVAQGSFDEFSAGMSFNSPFIISSVNLDDKLDAVKASCYYSFNHLTRTAVAAELKHNFS 179

Query: 181 NHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
                       T++T G QH +FPSTL+K RVNT+ K+GA  +   W+K  IA +GE D
Sbjct: 180 TTGR--------TTITFGAQHSMFPSTLMKARVNTDAKLGALFKLEMWEKLLIAFTGEMD 231

Query: 241 IRAS 244
             AS
Sbjct: 232 FMAS 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512503|ref|XP_003524958.1| PREDICTED: mitochondrial outer membrane protein porin 1-like [Glycine max]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/244 (44%), Positives = 147/244 (60%), Gaps = 15/244 (6%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS  PG+Y DIGKKA+D+L+KDY +  P  HF Y  +D N D+SC+ D +VPG  + F+ 
Sbjct: 1   MSTCPGIYFDIGKKAKDVLHKDYSNLSPI-HFHYQFMDYNVDLSCKVDELVPGFKSLFKC 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            IPDSG VEL++L +Y G T  IGL+          G D ++  S + G  +LSLG + A
Sbjct: 60  TIPDSGKVELQHLSNYTGITGCIGLEGNLEK-----GYDPVLNLSGLVGTNILSLGGNVA 114

Query: 121 FDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFS 180
            D+ TRT S  NAGL  NT    AS+ ++D  + ++AS Y E+ PLT+TA+AAEL HS S
Sbjct: 115 LDLPTRTISKLNAGLGLNTDFLVASLTMHDSFDIVKASCYHEVNPLTKTAIAAELNHSLS 174

Query: 181 NHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
                       TS TVG QH   P TLVK R +T G+ GA +QQ FW++  + ++GE +
Sbjct: 175 MGE---------TSATVGAQHAFLPQTLVKARFDTFGRAGALIQQGFWERCFVTMAGEVE 225

Query: 241 IRAS 244
              S
Sbjct: 226 FNTS 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073192|gb|ACJ84955.1| unknown [Medicago truncatula] gi|388498342|gb|AFK37237.1| unknown [Medicago truncatula]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 152/257 (59%), Gaps = 16/257 (6%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS SPG+Y ++G  A+D+LYKDY ++ P  HF Y  +D N   SC+   I+PG  T F+ 
Sbjct: 1   MSKSPGVYSNLGDNAKDVLYKDYVNQSPI-HFHYQFMDWNAGFSCKVQEILPGFRTVFKC 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            +PDSG VEL+YL+ + G T  IGL             D +VK S + G ++LSLG +AA
Sbjct: 60  TVPDSGKVELQYLNRFTGITGCIGLLGNEEG-----AYDPVVKLSGLLGTSILSLGANAA 114

Query: 121 FDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFS 180
             I TR+ +   AG   NTA   AS+ L+D  + L+A+ Y E+ PLT+TA+A ++KHS S
Sbjct: 115 LHIPTRSITKLTAGFGLNTAFLEASLTLHDSFDTLKATIYHEVNPLTQTAIATQVKHSLS 174

Query: 181 NHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
                       T +T+G QH  FP TL+K R +++GKVGA +QQ FWQ+F + ++ E D
Sbjct: 175 LKE---------TGVTIGAQHAFFPETLLKARFDSSGKVGALIQQGFWQRFFVTMASEID 225

Query: 241 IRAS-SWIPNVRFGMAF 256
             A+   IP V   MA 
Sbjct: 226 FGATDDKIPKVGVSMAL 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477441|ref|XP_003609006.1| Mitochondrial outer membrane protein porin [Medicago truncatula] gi|355510061|gb|AES91203.1| Mitochondrial outer membrane protein porin [Medicago truncatula] gi|388517825|gb|AFK46974.1| unknown [Medicago truncatula]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 151/257 (58%), Gaps = 16/257 (6%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS SPG+Y ++G  A+D+LYKDY ++ P  HF Y  +D N   SC+   I+PG  T F+ 
Sbjct: 1   MSKSPGVYSNLGDNAKDVLYKDYVNQSPI-HFHYQFMDWNAGFSCKVQEILPGFRTVFKC 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            +PDSG VEL+YL+ + G T  IGL             D +VK S + G ++LSLG + A
Sbjct: 60  TVPDSGKVELQYLNRFTGITGCIGLLGNEEG-----AYDPVVKLSGLLGTSILSLGANVA 114

Query: 121 FDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFS 180
             I TR+ +   AG   NTA   AS+ L+D  + L+A+ Y E+ PLT+TA+A ++KHS S
Sbjct: 115 LHIPTRSITKLTAGFGLNTAFLEASLTLHDSFDTLKATIYHEVNPLTQTAIATQVKHSLS 174

Query: 181 NHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
                       T +T+G QH  FP TL+K R +++GKVGA +QQ FWQ+F + ++ E D
Sbjct: 175 LKE---------TGVTIGAQHAFFPETLLKARFDSSGKVGALIQQGFWQRFFVTMASEID 225

Query: 241 IRAS-SWIPNVRFGMAF 256
             A+   IP V   MA 
Sbjct: 226 FGATDDKIPKVGVSMAL 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562812|ref|XP_003549662.1| PREDICTED: mitochondrial outer membrane protein porin 1-like [Glycine max]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 148/244 (60%), Gaps = 15/244 (6%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS  PG+Y DIGKKA+D+L+ DY +  P  HF Y  +D N D+SC+ D +VPG  + F+ 
Sbjct: 1   MSTCPGIYFDIGKKAKDVLHTDYSNLSPI-HFHYQFMDYNVDLSCKVDELVPGFKSLFKC 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            IPDSG +EL++L +Y G T  IGL+          G D ++  S + G  +LSLG + A
Sbjct: 60  TIPDSGKLELQHLSNYTGITGCIGLEGNLEK-----GYDPVLNLSGLVGTNILSLGGNVA 114

Query: 121 FDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFS 180
            D+ TRT S  NAGL  NT    AS+ ++D  + ++AS Y E+  LT+TA+AAELKHS S
Sbjct: 115 LDLPTRTISKLNAGLGLNTNFLVASLTMHDSFDIVKASCYHEVNLLTKTAIAAELKHSLS 174

Query: 181 NHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
                       TS T+G QH  FP TL+K R +T G+ GA +QQ FW++  + ++GE +
Sbjct: 175 MGE---------TSGTIGAQHAFFPQTLLKARFDTFGRAGALIQQGFWERCFVTMAGEVE 225

Query: 241 IRAS 244
            + S
Sbjct: 226 FKNS 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507170|ref|XP_003522343.1| PREDICTED: mitochondrial outer membrane protein porin 1-like [Glycine max]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/262 (41%), Positives = 153/262 (58%), Gaps = 20/262 (7%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS  PGLY DIGKKARD+L+KDY  + P  HF Y  ++ N D+SCQ + +V GL   F  
Sbjct: 1   MSQGPGLYFDIGKKARDVLHKDYAQQSPI-HFNYRFLNWNLDLSCQVEELVHGLRGLFTC 59

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            IPDSG +E+++L  ++GF+A IGL           G + +   S   G  +L+LG + A
Sbjct: 60  NIPDSGKLEIQHLSRFSGFSASIGLSGEAEK-----GYNPVANISGHIGTRILTLGANLA 114

Query: 121 FDIST----RTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELK 176
           +D+S     +  +N NAGLS N+    A+  L+D  + L+ S Y E+ PLT+TA+AAE+K
Sbjct: 115 YDLSASSSAKITNNLNAGLSLNSPYLVAAATLHDNFQTLKGSCYFEVNPLTKTAIAAEVK 174

Query: 177 HSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVS 236
           +  +++ +I         +TVG QH LFP TL+K R+N NG VG  +QQ F +KFSI V+
Sbjct: 175 YDLADYETIG--------VTVGAQHALFPWTLLKARLNNNGNVGGLIQQKFGRKFSITVA 226

Query: 237 GETDIRAS--SWIPNVRFGMAF 256
           GE +         P V   MA 
Sbjct: 227 GEMNFNEEDKEKFPKVGVSMAL 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516758|ref|XP_003527060.1| PREDICTED: mitochondrial outer membrane protein porin 1-like [Glycine max]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/262 (41%), Positives = 153/262 (58%), Gaps = 21/262 (8%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
           MS  PGLY DIGKKARD+L+K Y  +QP  HF Y  ++ N D+SCQ + +V GL   F  
Sbjct: 1   MSQGPGLYFDIGKKARDVLHKGYA-QQPPIHFNYRFLNWNLDLSCQ-EELVHGLRGLFTC 58

Query: 61  IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAA 120
            IPDSG +E+++   ++GF+A IGL           G + +   S   G  +L+LG + A
Sbjct: 59  NIPDSGKLEIQHFSRFSGFSASIGLSGEAEK-----GYNPVANISGHIGTRILTLGANLA 113

Query: 121 FDIS----TRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELK 176
            D+S     RT +N NAGLS N+    A+  L+D  + L+ S Y E+ PLT+TA+AAE+K
Sbjct: 114 CDLSGSSSARTTNNLNAGLSLNSPYLVAAATLHDNFQTLKGSCYFEVNPLTKTAIAAEVK 173

Query: 177 HSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVS 236
           +  ++  +        T +TVG QH LF  TL+K R+N NGKVG  +QQ F  KFSI V+
Sbjct: 174 YDLADDET--------TGVTVGAQHALFSWTLLKARLNNNGKVGGLIQQKFGTKFSITVA 225

Query: 237 GETDI--RASSWIPNVRFGMAF 256
           GE ++  +A    P V   MA 
Sbjct: 226 GEINLNEKAKEKFPKVGVSMAL 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734024|emb|CBI15271.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 157/276 (56%), Gaps = 40/276 (14%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQ---CDAI------- 50
           M+  P  Y++IG+KARDLLY+DY + QP  H+ Y C D ++D++ +   C +        
Sbjct: 1   MAYRPSFYLEIGRKARDLLYRDYTE-QPPMHYHYGCCDWSYDLALRSQICRSTSHEINDN 59

Query: 51  --------VPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDR 100
                   VPG+S   R I+PD  S  VELRYL D+ G TAGI          + +  + 
Sbjct: 60  NQELVGEHVPGISAVLRFIVPDPLSSKVELRYLRDFLGITAGI----------EGMTTNP 109

Query: 101 IVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYY 160
           ++ FS V G++V+SLGTD AFD   + F+  NAGLSF++ + +AS+ L DK +  +AS +
Sbjct: 110 VMSFSGVIGSSVVSLGTDLAFDTILKNFTKCNAGLSFSSPIVSASLTLEDKGDTAKASCF 169

Query: 161 QELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVG 220
             + PLT TA+AAELKH+FS +          TSLT+G QH + P T++K R +T GKVG
Sbjct: 170 GLINPLTSTAIAAELKHTFSQNE---------TSLTLGAQHEVAPLTVIKARADTTGKVG 220

Query: 221 AHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
           A  Q     K  + ++G+ DI+     P +   +A 
Sbjct: 221 ALFQHQLVSKIFLTLAGDVDIQELKTSPTIGLSLAL 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424908|ref|XP_002276636.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa isoform 1 [Vitis vinifera]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 143/295 (48%), Gaps = 60/295 (20%)

Query: 1   MSNSPGLYIDIGKKARDLLYKDY------------------------------------- 23
           M   PGLY DIGK ARDLLY+DY                                     
Sbjct: 1   MGKGPGLYSDIGKIARDLLYRDYQSDHKFTVTTYTSSGVAITSSGTKKGELFIADVNTQL 60

Query: 24  GDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTA 81
            +K      + D  +SN   +   D   PGL T F  IIPD  SG VEL+YLH+YAG + 
Sbjct: 61  KNKNITTDVKVD-TNSNLFTTITVDEPAPGLKTIFSFIIPDQRSGKVELQYLHEYAGIST 119

Query: 82  GIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTAL 141
            IGL A           + IV FS V GN  LSLGTD +FD +T  F+  NAGL F+ A 
Sbjct: 120 SIGLTA-----------NPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCNAGLGFSNAD 168

Query: 142 FNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201
             A++ LNDK + L ASYY  + PLT TAV AEL H FS + +         +LT+G QH
Sbjct: 169 LIAALTLNDKGDTLNASYYHTVSPLTNTAVGAELSHCFSTNEN---------TLTIGTQH 219

Query: 202 GLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
            L P T VK R N +GKV A +Q  +  K    +SGE D RA      +   +A 
Sbjct: 220 ALDPLTKVKARANNSGKVSALIQHEWRPKSLFTISGEVDARAVEKSAKIGLALAL 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2100252	276	VDAC1 "voltage dependent anion	0.899	0.840	0.371	9.4e-40
TAIR|locus:2147820	274	VDAC3 "voltage dependent anion	0.848	0.799	0.364	1.7e-36
TAIR|locus:2174517	274	VDAC4 "voltage dependent anion	0.875	0.824	0.284	6.4e-26
TAIR|locus:2097425	226	VDAC5 "voltage dependent anion	0.585	0.668	0.329	2.8e-20
POMBASE|SPBC27B12.13	344	tom40 "mitochondrial TOM compl	0.635	0.476	0.260	5.5e-05
TAIR|locus:2151749	163	AT5G37610 [Arabidopsis thalian	0.562	0.889	0.268	0.00038

TAIR|locus:2100252 VDAC1 "voltage dependent anion channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 97/261 (37%), Positives = 133/261 (50%)

Query:     4 SP-GLYI-DIGKKARDLLYKDYGDKQPANHFRYD---CVDSNFDVSCQCDAIVPGLSTAF 58
             SP G+ I   G K  DLL  D   +    +   D   C DS F ++   D   PGL + F
Sbjct:    35 SPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIF 94

Query:    59 RSIIPD--SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLG 116
                +PD  SG VEL+YLH+YAG +  +GL             +  V FS V G+ VL++G
Sbjct:    95 SFKVPDQNSGKVELQYLHEYAGISTSMGLTQ-----------NPTVNFSGVIGSNVLAVG 143

Query:   117 TDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELK 176
             TD +FD  +  F+  NAGLSF      AS+ +NDK + L ASYY  + PL  TAV AE+ 
Sbjct:   144 TDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVS 203

Query:   177 HSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVS 236
             H  S+  S         ++TVG QH L P T VK RVN+ G   A +Q  +  K    +S
Sbjct:   204 HKLSSKDS---------TITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTIS 254

Query:   237 GETDIRASSWIPNVRFGMAFS 257
             GE D ++     + + G+A +
Sbjct:   255 GEVDTKSID--KSAKVGLALA 273

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2147820 VDAC3 "voltage dependent anion channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 90/247 (36%), Positives = 120/247 (48%)

Query:     3 NSPGLYIDI-GKKARDLLYKDYGDKQPANHFRYDC---VDSNFDVSCQCDAIVPGLSTAF 58
             +S G+ I   G     L   D   +   N+F  D     DS+   +   D   PGL    
Sbjct:    35 SSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIV 94

Query:    59 RSIIPD--SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLG 116
             ++ +PD  SG  E++Y HDYAG +  +G  A             IV FS V G   LSLG
Sbjct:    95 QAKLPDHKSGKAEVQYFHDYAGISTSVGFTA-----------TPIVNFSGVVGTNGLSLG 143

Query:   117 TDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELK 176
             TD A++  +  F ++NAG +F      AS+ LNDK E L ASYYQ + P   T V AE+ 
Sbjct:   144 TDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEIS 201

Query:   177 HSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVS 236
             H+F+      +N     ++TVG QH L P T VK RVN  G   A +Q  +  K    VS
Sbjct:   202 HNFTT----KEN-----AITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVS 252

Query:   237 GETDIRA 243
             GE D +A
Sbjct:   253 GEVDSKA 259

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

TAIR|locus:2174517 VDAC4 "voltage dependent anion channel 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 72/253 (28%), Positives = 118/253 (46%)

Query:     8 YIDIGKKARDLLYKDYGDKQPANHFRYDC-VDSNFDVSCQCDA--IVPGLSTAFRSIIPD 64
             ++  G K  D  + D        +   D  +DS+  VS +     ++P         IPD
Sbjct:    41 FVATGLKKDDFFFGDISTLYKGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPD 100

Query:    65 --SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFD 122
               SG ++++Y+H +A   + IGL               ++  S   G+  + LG + +FD
Sbjct:   101 HKSGKLDVQYVHPHATLNSSIGLNP-----------TPLLDLSATIGSQNVCLGGEVSFD 149

Query:   123 ISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNH 182
              ++ + + YNAG+ FN    +A++ L DK E+LRA+Y   + P T  +  AEL   FSN+
Sbjct:   150 TASSSLTKYNAGIGFNNQGVSAALILEDKGESLRATYVHTVNPTT--SFGAELIRRFSNY 207

Query:   183 RSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIR 242
              +         S TVG  H +   T+VK R + +GK G  VQ+ +  K  I  S E D +
Sbjct:   208 NN---------SFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQREWRPKSHITFSAEYDSK 258

Query:   243 ASSWIPNVRFGMA 255
             A +  P +   +A
Sbjct:   259 AVTSSPKLGLALA 271

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2097425 VDAC5 "voltage dependent anion channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 54/164 (32%), Positives = 82/164 (50%)

Query:    96 VGLDRIVKFSVVAGNTVLSL--GTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLE 153
             +  D  VK  V   N  +S+   T   +D ++RTF+ YN G+S        S+ L DK +
Sbjct:    71 IDTDFNVKSLVYPMNKFVSIDHNTLTGYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGD 130

Query:   154 NLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRV 213
             +++ASY   L   TR+A   E+       R IS N    T++TVG  + +   T VK ++
Sbjct:   131 SIKASYVYYLDESTRSATVGEVI------RKISTN---ETTVTVGGLYAVDHLTNVKAKL 181

Query:   214 NTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
             N+NGK GA +Q     K  + +SGE D +     P  R G++ S
Sbjct:   182 NSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYP--RLGLSLS 223

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

POMBASE|SPBC27B12.13 tom40 "mitochondrial TOM complex subunit Tom40 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 121 (47.7 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 45/173 (26%), Positives = 80/173 (46%)

Query:    74 HDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTV-LSLGTDAAFDISTRTFSNYN 132
             HD+ G       KA   N      L  I   S++   T  LSLG +A +   + +     
Sbjct:   140 HDHKGKDFSFSFKA--MNPWYEEKLTGIYIISLLQSVTPKLSLGVEALWQKPSSSIGPEE 197

Query:   133 AGLSF----NTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDN 188
             A LS+    N A + A+ +LN    ++ A+++++L P     V  +L     NH +    
Sbjct:   198 ATLSYMTRYNAADWIATAHLNGSQGDVTATFWRKLSPKVEAGVECQLSPVGLNHSAALMT 257

Query:   189 IPIPTSLT-VGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
              P P  LT VG ++  F  ++ + +V++ G+VG ++++      ++A S E D
Sbjct:   258 GPKPEGLTSVGVKYE-FAQSIYRGQVDSKGRVGVYLERRLAPAITLAFSSELD 309

GO:0005739 "mitochondrion" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0030150 "protein import into mitochondrial matrix" evidence=ISS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS

GO:0046930 "pore complex" evidence=IEA

TAIR|locus:2151749 AT5G37610 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00038, P = 0.00038
 Identities = 44/164 (26%), Positives = 71/164 (43%)

Query:    96 VGL--DRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLE 153
             VGL  + I+ FS V GN     G +   D+  R  +  N  LS  T     + +++ K  
Sbjct:    12 VGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTTFSIDKKAS 71

Query:   154 NLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVK--V 211
                ASYYQ L   ++T   AE K+  S+  +         S ++G +H      L++  +
Sbjct:    72 LFTASYYQRLH--SKTVCGAEAKYILSDKSN---------SFSIGKRHLFGDDDLIQALL 120

Query:   212 RVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA 255
              V+  G +    Q  +  K    ++GE  +  SS     RFG+A
Sbjct:   121 SVSNGGSMRVLFQHHWTLKSFFTIAGERLLNHSSQ----RFGLA 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       258   0.00087  114 3  11 22  0.45    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  194 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.62u 0.08s 21.70t   Elapsed:  00:00:02
  Total cpu time:  21.62u 0.08s 21.70t   Elapsed:  00:00:02
  Start:  Mon May 20 18:49:37 2013   End:  Mon May 20 18:49:39 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRH5	VDAC1_ARATH	No assigned EC number	0.3639	0.9147	0.8550	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120643 porin/voltage-dependent anion-selective channel protein (249 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	1e-32
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	5e-30
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	3e-04

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  119 bits (301), Expect = 1e-32
 Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 67/281 (23%)

Query: 5   PGLYIDIGKKARDLLYKDYG-----------------------DKQPANHFRYDC----- 36
           PG Y DIGK+ARDLL KDY                                  D      
Sbjct: 2   PGTYEDIGKEARDLLNKDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKYK 61

Query: 37  -----------VDSNFDVSCQC-DAIVPGLSTAFRSII-----PDSGGVELRYLHDYAGF 79
                       D++   +    D + PGL     + +       S  +EL Y  D    
Sbjct: 62  DKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKKSAKLELEYKGDDFTA 121

Query: 80  TAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNT 139
           +  +GL  G            IV  S + G T L+LG +A +D ++   + YNA L +  
Sbjct: 122 SLKVGLLKGP-----------IVVGSALQGVTGLALGAEAVYDTASGKLTKYNAALGYAA 170

Query: 140 ALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGF 199
             + AS+ LN+K + L ASYY ++    +  V AEL  +FS            T+ TVG+
Sbjct: 171 RDYIASLTLNNKGDVLTASYYHKVSD--KLEVGAELTWNFS---------SNETTTTVGY 219

Query: 200 QHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240
           ++ L PST VK +V++NGKVG  +++      ++ +S E D
Sbjct: 220 KYDLDPSTTVKAKVDSNGKVGLLLEKRLRPGVTLTLSAEVD 260

Length = 272

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  113 bits (284), Expect = 5e-30
 Identities = 72/298 (24%), Positives = 112/298 (37%), Gaps = 69/298 (23%)

Query: 5   PGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPD 64
           P  Y DIGK A+DLL K Y      N   +       DV  +    V   ST  +     
Sbjct: 1   PPTYFDIGKSAKDLLTKGY------NFGAW-----KLDVKTKTPNGVEFTSTGSKKPDTG 49

Query: 65  --SGGVELRYLHDYAGFTAGI------------------GLKAG---------------- 88
             SG +E +Y       T                     GLK                  
Sbjct: 50  KVSGSLEAKYKIKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKL 109

Query: 89  ----RHNHLQ---SVGLDR--IVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNT 139
               +H+ +     V L++  +V  S V G     LG +  +D +   F+ YN  L +  
Sbjct: 110 KAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTN 169

Query: 140 ALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGF 199
             F  S+ LN+  + LR SY+ ++ P  R AV A++      +          T+  VG 
Sbjct: 170 GDFELSLKLNN-GKTLRGSYFHKVSP--RLAVGAKVTWYSGTN---------ETTFAVGG 217

Query: 200 QHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
           Q+ L P  LVK +VN +G++G   Q       ++ +S   D +  +     +FG++ S
Sbjct: 218 QYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQ-GGHKFGLSLS 274

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 113 LSLGTDAAF-DISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAV 171
           L+LG +  +  +     S  +    +    + AS  L      L  SYY++L    +  +
Sbjct: 149 LALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLG-AQGGLHLSYYRKLSD--KLQL 205

Query: 172 AAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKF 231
             EL+ +     S           T+G+Q+  F  +  +  +++NGKV A +++      
Sbjct: 206 GVELELNLRTREST---------ATLGYQY-DFRQSRFRGSIDSNGKVSAVLEKRLPLPL 255

Query: 232 SIAVSGETDIRASSWIPNVRFGMAFS 257
           S+ +SGE +   +    + +FG   +
Sbjct: 256 SLLLSGELNHVKN----DYKFGFGLT 277

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	99.88
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.19
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	98.94
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	98.78
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	98.38
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.25
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	96.64
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	93.67
KOG3296	308	consensus Translocase of outer mitochondrial membr	93.31
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	91.14
PRK03761	778	LPS assembly outer membrane complex protein LptD;	86.98
PRK04423	798	organic solvent tolerance protein; Provisional	84.69
PF13609	311	Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1	84.28
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	83.16

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-56  Score=403.34  Aligned_cols=232  Identities=28%  Similarity=0.385  Sum_probs=212.9

Q ss_pred             CCCCccccccccccccccCCCCCCCCeeE-------------------------------EEeecc----------ccce
Q 025077            3 NSPGLYIDIGKKARDLLYKDYGDKQPANH-------------------------------FRYDCV----------DSNF   41 (258)
Q Consensus         3 ~~P~~y~DlgK~arDll~k~y~~~~k~~~-------------------------------~~~~~~----------~~~l   41 (258)
                      |+||+|.||||.|||||+|||+|++++..                               |+++++          +++|
T Consensus         2 ~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~L   81 (281)
T KOG3126|consen    2 MAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNTL   81 (281)
T ss_pred             CCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCcc
Confidence            78999999999999999999999977555                               443432          5559


Q ss_pred             eEEEEEcc-CCCCeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceee
Q 025077           42 DVSCQCDA-IVPGLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSL  115 (258)
Q Consensus        42 ~t~i~~~~-~~~Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~l  115 (258)
                      .++|++++ ++||||+++++.+ |+    ++|++++|.||++++.++..+..           +|++..|+|+|+++|++
T Consensus        82 ~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~-----------~P~i~~s~v~g~~g~l~  150 (281)
T KOG3126|consen   82 GTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTA-----------NPLILGSLVLGHEGWLL  150 (281)
T ss_pred             ceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeecccccc-----------CCeEEEEEEecccceEE
Confidence            99999976 8999999998885 63    89999999999999999643344           99999999999999999


Q ss_pred             eEEEEEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceE
Q 025077          116 GTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSL  195 (258)
Q Consensus       116 G~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~  195 (258)
                      |+|+.||++++.+++|+++++|+++|++++++++| ++++.+|+|||++++  ++++++++|.....         +++|
T Consensus       151 G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~s~yq~v~~~--~~~~~~~~~~~~~~---------~~~~  218 (281)
T KOG3126|consen  151 GYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNN-GTEFLASIYQRVNEK--LETGANAEWIAGSS---------NTRF  218 (281)
T ss_pred             EEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecc-cchhhhhhhhhhcch--heeeeeEEEeecCC---------ccEE
Confidence            99999999999999999999999999999999987 689999999999999  78899999998777         8999


Q ss_pred             EEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077          196 TVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS  257 (258)
Q Consensus       196 tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l~  257 (258)
                      +||+||.+|+.+++||||||+|++|++|||+|||++++++|+++|++++++.|||||+|+|+
T Consensus       219 ~igt~Y~lD~~t~VkAKVnn~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~  280 (281)
T KOG3126|consen  219 TIGTKYALDPDTSVKAKVNNAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALK  280 (281)
T ss_pred             EEEEEeccCCCceeeeeecCCceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeec
Confidence            99999999999999999999999999999999999999999999999998779999999997

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=9.6e-53  Score=380.62  Aligned_cols=230  Identities=27%  Similarity=0.457  Sum_probs=211.7

Q ss_pred             CCccccccccccccccCCCCC-CCCeeE------------------------------EEeecc--------ccceeEEE
Q 025077            5 PGLYIDIGKKARDLLYKDYGD-KQPANH------------------------------FRYDCV--------DSNFDVSC   45 (258)
Q Consensus         5 P~~y~DlgK~arDll~k~y~~-~~k~~~------------------------------~~~~~~--------~~~l~t~i   45 (258)
                      ||+|.||||.|||||+|||+| .+++++                              |+.+..        ++++.++|
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v   80 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI   80 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence            899999999999999999994 466665                              332212        45589999


Q ss_pred             EEccC-CCCeEEEEEEEcc-C----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceeeeEEE
Q 025077           46 QCDAI-VPGLSTAFRSIIP-D----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDA  119 (258)
Q Consensus        46 ~~~~~-~~Glk~~~~~~~p-~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~lG~e~  119 (258)
                      ++++. +||||+++++.+| +    +++++++|+|+++++++++++..           +|.++.|+++++++|++|+|+
T Consensus        81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~-----------~p~~~~s~~~g~~~~~~G~e~  149 (276)
T cd07306          81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNK-----------GPLVGASAVLGYKGFLLGAEV  149 (276)
T ss_pred             EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccC-----------CCeeEEEEEecccceEEEEEE
Confidence            99995 5999999999864 2    88999999999999999999976           899999999999999999999


Q ss_pred             EEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEE
Q 025077          120 AFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGF  199 (258)
Q Consensus       120 ~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~  199 (258)
                      .||++++++++|+++++|+.+||+++++++| ++.+++||||+|+|+  +++|+|+.|+...+         +++++||+
T Consensus       150 ~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~--l~~g~e~~~~~~~~---------~~~~~vg~  217 (276)
T cd07306         150 VYDTAKSKFTKYNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPR--LAVGAKVTWYSGTN---------ETTFAVGG  217 (276)
T ss_pred             EEeccCCcEeeEEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCC--eEEEEEEEEecCCC---------CcEEEEEE
Confidence            9999999999999999999999999999998 799999999999999  89999999998777         89999999


Q ss_pred             EEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC-CCCeeEEEEEEe
Q 025077          200 QHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS-WIPNVRFGMAFS  257 (258)
Q Consensus       200 ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~-~~hK~Gl~l~l~  257 (258)
                      ||++|+++++|||||++|+++++|||+|+|++++++|+++|+++++ +.||||++|+|+
T Consensus       218 ~y~l~~~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~  276 (276)
T cd07306         218 QYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK  276 (276)
T ss_pred             EEEcCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence            9999999999999999999999999999999999999999999876 789999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=5.1e-49  Score=356.37  Aligned_cols=227  Identities=21%  Similarity=0.337  Sum_probs=203.1

Q ss_pred             ccccccccccccccCCCCCCCCeeE--------------------------------EEeec----------cccceeEE
Q 025077            7 LYIDIGKKARDLLYKDYGDKQPANH--------------------------------FRYDC----------VDSNFDVS   44 (258)
Q Consensus         7 ~y~DlgK~arDll~k~y~~~~k~~~--------------------------------~~~~~----------~~~~l~t~   44 (258)
                      .|+||||+|||||++||.++++|++                                |+++.          .+++++++
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~~~   80 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLGLE   80 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCCccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcceEE
Confidence            5999999999999999998877766                                11111          15668999


Q ss_pred             EEEcc-CCCCeEEEEEEEc-cCCCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceeeeEEEEEe
Q 025077           45 CQCDA-IVPGLSTAFRSII-PDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFD  122 (258)
Q Consensus        45 i~~~~-~~~Glk~~~~~~~-p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~lG~e~~yd  122 (258)
                      +++++ +.||+|+++++++ |.+++.++||.+||.+.+.+++++.+        ..+|++..++++|+++|++|+|+.||
T Consensus        81 ~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~--------~~gp~v~~~~~~g~~~~~~G~e~~yd  152 (274)
T cd07303          81 ITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFD--------IAGPLIRGALVLGYEGWLAGYQMVFE  152 (274)
T ss_pred             EEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEee--------cCCCEEEEEEEEeecceEEEEEEEEe
Confidence            99998 6899999999996 55999999999999997777666431        04799999999999999999999999


Q ss_pred             ccCCcceeEEEEEeeec--CceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEE
Q 025077          123 ISTRTFSNYNAGLSFNT--ALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQ  200 (258)
Q Consensus       123 ~~~~~~~~~~~~~~y~~--~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~k  200 (258)
                      +++ .+++|+++++|.+  +||+++++++| ++.+++||||||+|+  +++|+|++|+.+.+         +++++||+|
T Consensus       153 ~~~-~~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~--~~~g~e~~~~~~~~---------e~~~~vG~~  219 (274)
T cd07303         153 TVS-RVTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDK--LEVGVNLAATAGNS---------NTRFGIAAK  219 (274)
T ss_pred             ccc-cccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCc--eEEEEEEEeeccCC---------ccEEEEEEE
Confidence            987 5789999999999  99999999987 789999999999999  89999999998777         999999999


Q ss_pred             EeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077          201 HGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF  256 (258)
Q Consensus       201 y~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l  256 (258)
                      |++|+++++||||||+|+|+++|||+|+|+++|++|+++|++  ++.||||+||+|
T Consensus       220 y~l~~~~~vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~  273 (274)
T cd07303         220 YQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF  273 (274)
T ss_pred             EecCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence            999999999999999999999999999999999999999996  678999999987

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=4e-41  Score=300.83  Aligned_cols=224  Identities=30%  Similarity=0.447  Sum_probs=194.8

Q ss_pred             CCCccccccccccccccCCCCCC-CCeeE-------------------------------EEee------ccccceeEEE
Q 025077            4 SPGLYIDIGKKARDLLYKDYGDK-QPANH-------------------------------FRYD------CVDSNFDVSC   45 (258)
Q Consensus         4 ~P~~y~DlgK~arDll~k~y~~~-~k~~~-------------------------------~~~~------~~~~~l~t~i   45 (258)
                      +||.|.||+|+|||||.+||+|+ .+|.+                               |...      +.++.+.+++
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   80 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYKGPKLTVKGDTDNDGNLEA   80 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEECEEEEEEEETTTEEEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEeCceeeEEEEeCCcccEEE
Confidence            69999999999999999999988 56555                               1110      1155578888


Q ss_pred             EEcc-CCCCeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEecc-ceeeeEE
Q 025077           46 QCDA-IVPGLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNT-VLSLGTD  118 (258)
Q Consensus        46 ~~~~-~~~Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~-~~~lG~e  118 (258)
                      ++.+ +.|||++++.+++ |+    ..+++++|+++.+++.+.+++.           .+|++..|.+.+.. +|++|+|
T Consensus        81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~-----------~~~~~~~s~~~~v~~~~~lG~e  149 (273)
T PF01459_consen   81 SVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDND-----------NNPIFNASYVQSVTPNLALGAE  149 (273)
T ss_dssp             EEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEES-----------TS-EEEEEEEEEET-TEEEEEE
T ss_pred             EEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEccc-----------CCCcEEEEEEEeccccEEEEEE
Confidence            8888 7999999999985 44    4568888999988888888873           38999999999866 9999999


Q ss_pred             EEEeccCCcceeEEEEEeeecC----ceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCce
Q 025077          119 AAFDISTRTFSNYNAGLSFNTA----LFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTS  194 (258)
Q Consensus       119 ~~yd~~~~~~~~~~~~~~y~~~----d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~  194 (258)
                      +.||.+.+.+.+|+++++|..+    +|++++++.++++.+.+|||||++++  +++|+|+.|+...+         ++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~--~~~g~e~~~~~~~~---------~~~  218 (273)
T PF01459_consen  150 ATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDK--LQLGAELTYNLSSR---------EST  218 (273)
T ss_dssp             EEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTT--EEEEEEEEEETTCC---------EEE
T ss_pred             EEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccc--eeeeeeeeecccCC---------Cce
Confidence            9999999999999999999999    99999999766899999999999999  89999999999888         899


Q ss_pred             EEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeE
Q 025077          195 LTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVR  251 (258)
Q Consensus       195 ~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~G  251 (258)
                      ++||+||.+++.+++|||||++|.|+++||++|+|+++|++|+++|+++.  .||||
T Consensus       219 ~~vG~~~~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~--~~KfG  273 (273)
T PF01459_consen  219 FTVGYQYKLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELDHKNN--NHKFG  273 (273)
T ss_dssp             EEEEEEEEECTTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEECTT-C---EEEE
T ss_pred             EEEEEEEEcCcccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEccCCC--CCCcC
Confidence            99999999998889999999999999999999999999999999999765  79998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=2.1e-40  Score=300.57  Aligned_cols=229  Identities=19%  Similarity=0.266  Sum_probs=206.0

Q ss_pred             CCCCccccccccccccccCCCCCCCCeeE------------------------------EEeec--c--------cccee
Q 025077            3 NSPGLYIDIGKKARDLLYKDYGDKQPANH------------------------------FRYDC--V--------DSNFD   42 (258)
Q Consensus         3 ~~P~~y~DlgK~arDll~k~y~~~~k~~~------------------------------~~~~~--~--------~~~l~   42 (258)
                      -+|+.|+||.|++|||+..+|..+.++.+                              |..++  .        +.+++
T Consensus         2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~l~   81 (279)
T cd07305           2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGNLN   81 (279)
T ss_pred             cCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCcee
Confidence            37999999999999999999976666555                              22222  1        44466


Q ss_pred             EEEEEccCCCCeEEEEEEEccCCCeeEEEEeeeceeeeEEeeecccccccccccccCC-eEEEEEEEe-------cccee
Q 025077           43 VSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDR-IVKFSVVAG-------NTVLS  114 (258)
Q Consensus        43 t~i~~~~~~~Glk~~~~~~~p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P-~v~~s~v~g-------~~~~~  114 (258)
                      +.+... +.|.+++++.+++|+.++.+.|+.+||.+.+.++.++.          .|| +++.+++++       +++|.
T Consensus        82 ~~~~~~-~~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~----------~n~~~~~~sg~~~~~ylq~vt~~l~  150 (279)
T cd07305          82 ARIIHQ-LGDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKL----------ANPDILNETGIYVASYLQSVTPKLA  150 (279)
T ss_pred             EEEEec-cCcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEE----------eCCCcccccEEEEEEEEEEccCcEE
Confidence            677644 88999999999998888999999999999999999996          599 889999998       99999


Q ss_pred             eeEEEEEec-cCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCc
Q 025077          115 LGTDAAFDI-STRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPT  193 (258)
Q Consensus       115 lG~e~~yd~-~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~  193 (258)
                      +|+|+.|++ +.+++++++++++|+.+||+++++++++ +.+.+|||||++|+  +++|+|+.|++..+         ++
T Consensus       151 lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~-~~l~asY~~kvs~~--l~lG~el~~~~~~~---------es  218 (279)
T cd07305         151 LGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQ-GGLHLSYYRKLSDK--LQLGVELELNLRTR---------ES  218 (279)
T ss_pred             EEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCC-CeEEEEEEEEcccc--eEeeeeeeecccCC---------ce
Confidence            999999997 7899999999999999999999999985 79999999999999  89999999999877         99


Q ss_pred             eEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077          194 SLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS  257 (258)
Q Consensus       194 ~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l~  257 (258)
                      .+++|+||.++ ++.+||+||++|+|+++||++|+|++++++|+++|++  ++.||||+||+|+
T Consensus       219 ~~tvg~~y~~~-~~~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~  279 (279)
T cd07305         219 TATLGYQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG  279 (279)
T ss_pred             eEEEEEEEEcC-CCEEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence            99999999996 9999999999999999999999999999999999995  4689999999984

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.4e-23  Score=190.79  Aligned_cols=183  Identities=20%  Similarity=0.229  Sum_probs=160.0

Q ss_pred             CCCCeEEEEEEEccCCCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEe-------ccceeeeEEEEEe
Q 025077           50 IVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAG-------NTVLSLGTDAAFD  122 (258)
Q Consensus        50 ~~~Glk~~~~~~~p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g-------~~~~~lG~e~~yd  122 (258)
                      +.++|+.++..++.+++.++.|+..++++.+.+..+..          +||-+..|+++.       ++.|+||+|+.|.
T Consensus       117 l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~----------~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~  186 (308)
T KOG3296|consen  117 LTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPL----------GNPDLGESGIYVASYLQSVTPRLSLGGELLYQ  186 (308)
T ss_pred             cchhhHHHHHHHhcchhhhccccccceecccccccccc----------cCcccccchHHHHHHHhhhcccccccceeEec
Confidence            57888888888888888999999999999999999887          699766788754       9999999999999


Q ss_pred             c-cCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEE
Q 025077          123 I-STRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH  201 (258)
Q Consensus       123 ~-~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky  201 (258)
                      . +.......+.+.+|...+|++++++.-  ..++++||||+.++  ++.|+|+.++..-+         ++..+++++|
T Consensus       187 ~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~--~~~~ve~~~~~~~~---------~~~~t~a~~~  253 (308)
T KOG3296|consen  187 RRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEK--LQMGVEFETNTRLQ---------STDVTAAYGY  253 (308)
T ss_pred             cCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhh--hccceeEeeecccC---------CcceEEEEEe
Confidence            8 556666778888999999999999985  47999999999999  88999999998766         6777777777


Q ss_pred             eeC-CCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077          202 GLF-PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS  257 (258)
Q Consensus       202 ~ld-~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l~  257 (258)
                      ++. +++.+|++||++|.||+.+|++|.+.+++.+|+++||.  +..+|||++|.+.
T Consensus       254 ~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~--k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  254 DLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHV--KNDFKFGFGLTIG  308 (308)
T ss_pred             eccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeeccc--ccccccceeEEeC
Confidence            764 35999999999999999999999888999999999994  4579999999874

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.19  E-value=2e-08  Score=91.25  Aligned_cols=187  Identities=16%  Similarity=0.172  Sum_probs=128.0

Q ss_pred             eEEEEEcc-CCCCeEEEEEEEccC-----CCeeEEEEeeec--eeeeEEeeecccccccccccccCCeEEEEEEEeccce
Q 025077           42 DVSCQCDA-IVPGLSTAFRSIIPD-----SGGVELRYLHDY--AGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVL  113 (258)
Q Consensus        42 ~t~i~~~~-~~~Glk~~~~~~~p~-----s~k~~~qy~~~~--~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~  113 (258)
                      +.++++.- +.|.+.+.-++.+..     +-.+..+|..+.  .-+.+.++-.               -+.++-+-+. |
T Consensus        25 G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~---------------g~l~~~~~~~-~   88 (279)
T cd07305          25 GFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDND---------------GNLNARIIHQ-L   88 (279)
T ss_pred             cEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCC---------------CceeEEEEec-c
Confidence            44555553 567766666555422     346777777776  4444444321               1222222211 2


Q ss_pred             --eeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEcccc-----CeEEEEEEEEeCCCcceeEEEEEEEee--cCCcc
Q 025077          114 --SLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKL-----ENLRASYYQELVPLTRTAVAAELKHSF--SNHRS  184 (258)
Q Consensus       114 --~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~-----~~~~aS~~~kv~~~~~~~vgae~~~~~--~~~~~  184 (258)
                        .+-..+..+.+......+.+.+-|..+||++++++.+..     ..+.++|.|+|+|+  +++|+|+.|..  ...  
T Consensus        89 ~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~--l~lG~E~~~~~~~~~~--  164 (279)
T cd07305          89 GDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK--LALGGELVYQRVPGNG--  164 (279)
T ss_pred             CcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc--EEEEEEEEEEEcCCCC--
Confidence              344455555566677889999999999999999976542     68999999999999  89999999984  444  


Q ss_pred             cCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077          185 ISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF  256 (258)
Q Consensus       185 ~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l  256 (258)
                             .+.+.+|++|.- ++.+..+++++.+.+.+.|-|++.|++.++...+.+...-+....+|....+
T Consensus       165 -------~~~~~~~~rY~~-~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~  228 (279)
T cd07305         165 -------ISVLSYAARYTA-GNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF  228 (279)
T ss_pred             -------ceeEEEEEEEcc-CCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence                   789999999996 6788899999999999999999999755544444443222234555554443

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=98.94  E-value=3.6e-09  Score=88.60  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=83.5

Q ss_pred             CCCCccccccccc-cccccCCCCCC-CCeeE-------------------------EEee------------cc--ccce
Q 025077            3 NSPGLYIDIGKKA-RDLLYKDYGDK-QPANH-------------------------FRYD------------CV--DSNF   41 (258)
Q Consensus         3 ~~P~~y~DlgK~a-rDll~k~y~~~-~k~~~-------------------------~~~~------------~~--~~~l   41 (258)
                      -+|++|++|.|++ ||++-+.|.|+ .++.+                         |...            ++  +.++
T Consensus         2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l   81 (161)
T TIGR00989         2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV   81 (161)
T ss_pred             cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence            3799999999999 99999999886 22222                         2211            01  3334


Q ss_pred             eEEEEEccCCCCeEEEEEEEccCCCeeEEEEeeeceeeeEEeeecccccccccccccCC-eEEE--EEEEe-------cc
Q 025077           42 DVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDR-IVKF--SVVAG-------NT  111 (258)
Q Consensus        42 ~t~i~~~~~~~Glk~~~~~~~p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P-~v~~--s~v~g-------~~  111 (258)
                      ++.+.. ++.+.+.+++.+++.++....+|.++||.+-++++.+++          .|| +++.  +++++       +|
T Consensus        82 ~ar~~~-~~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~G~Dft~~lk~----------~Np~~~~~~~sGi~v~sylQsVTp  150 (161)
T TIGR00989        82 STRLNY-RWGDRTISKVQFQISGGQPDMCQFEHDHLGDDFSASLKA----------INPSFLEKGLTGIFVGSYLQSVTP  150 (161)
T ss_pred             EEEEEE-eeCcceeEEEEEEecCCCCceEEEEEEecCCeEEEEEEE----------cCcccccccceEEEEEeeeehhCc
Confidence            444433 478999999999986655699999999999999999998          699 4454  78855       99


Q ss_pred             ceeeeEEEEEe
Q 025077          112 VLSLGTDAAFD  122 (258)
Q Consensus       112 ~~~lG~e~~yd  122 (258)
                      +|+||+|+.|+
T Consensus       151 ~LaLG~E~~yq  161 (161)
T TIGR00989       151 RLGLGLEALWQ  161 (161)
T ss_pred             ceeeeeeeEeC
Confidence            99999999985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=98.78  E-value=2.1e-05  Score=70.16  Aligned_cols=142  Identities=18%  Similarity=0.179  Sum_probs=100.4

Q ss_pred             CCeEEEEEEEe---ccceeeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEcc-ccCeEEEEEEEEeCCCcceeEEEE
Q 025077           99 DRIVKFSVVAG---NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLND-KLENLRASYYQELVPLTRTAVAAE  174 (258)
Q Consensus        99 ~P~v~~s~v~g---~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~-~~~~~~aS~~~kv~~~~~~~vgae  174 (258)
                      .+....++-+-   .++|.+-.++.+.. ......+.+.+.|..++|.+.+.+.+ ....+.+||.|.+.|+  +.+|+|
T Consensus        73 d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~--~~lG~e  149 (273)
T PF01459_consen   73 DNDGNLEASVRNKLSPGLKLKLSAQLSP-GSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPN--LALGAE  149 (273)
T ss_dssp             TTEEEEEEEEESSTTTTEEEEEEEEE-T-TTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-T--EEEEEE
T ss_pred             CCcccEEEEEecccCcceEEEEEEEEee-cCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEecccc--EEEEEE
Confidence            55555555443   46655555555432 33236788899999999999999985 1368999999999999  899999


Q ss_pred             EEEeecCCcccCCCCCCCce-----EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEEeccceEEEEEEeeeccCCCCCC
Q 025077          175 LKHSFSNHRSISDNIPIPTS-----LTVGFQHGLFPSTLVKVRV-NTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIP  248 (258)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~-----~tiG~ky~ld~~s~~Kakv-ns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~h  248 (258)
                      +.|+...+         +..     +..+.+|. .++.++-+++ ++.+.+.+.|.|++.|.+.++...+.+...  ...
T Consensus       150 ~~~~~~~~---------~~~~~~~~~~~~~~Y~-~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~--~~~  217 (273)
T PF01459_consen  150 ATYDLSSG---------KSSKYNAGLSYAARYT-HPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSS--RES  217 (273)
T ss_dssp             EEEETTTT---------CEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTC--CEE
T ss_pred             EEEecccC---------CcCcceEEEEEecccc-ceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccC--CCc
Confidence            99988765         332     55666666 4689999999 789999999999999998888888887632  234


Q ss_pred             eeEEEEE
Q 025077          249 NVRFGMA  255 (258)
Q Consensus       249 K~Gl~l~  255 (258)
                      .+.+|..
T Consensus       218 ~~~vG~~  224 (273)
T PF01459_consen  218 TFTVGYQ  224 (273)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            5555543

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=98.38  E-value=0.00095  Score=60.57  Aligned_cols=176  Identities=14%  Similarity=0.097  Sum_probs=118.5

Q ss_pred             CeEEEEEEE-ccC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEE--eccceeeeEEEEEeccC
Q 025077           53 GLSTAFRSI-IPD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVA--GNTVLSLGTDAAFDIST  125 (258)
Q Consensus        53 Glk~~~~~~-~p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~--g~~~~~lG~e~~yd~~~  125 (258)
                      |+.++.... .|+    ++.++..|+..  +++.+.....          .|.+...-.+-  ..+++-+-.+..|++..
T Consensus        35 gv~~~~~g~~~~~~~~~~g~~e~k~~~~--~~t~~~k~~t----------~n~l~t~v~~~~~~~~glk~~~~~~~~p~~  102 (276)
T cd07306          35 GVEFTSTGSKKPDTGKVSGSLEAKYKIK--GLTLTQKWNT----------DNVLLTEITIEDLLAPGLKLTLDTTFPPNT  102 (276)
T ss_pred             CeEEEEEEEeCCCCceEEEEEEEEEEeC--CEEEEEEEeC----------CCceeEEEEECcccCCcceEEEEEEECCCC
Confidence            777777554 565    45566666666  4444444433          13322211111  13788888888887653


Q ss_pred             CcceeEEEEEeeecCceEEEEEEccc-cCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeC
Q 025077          126 RTFSNYNAGLSFNTALFNASVNLNDK-LENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLF  204 (258)
Q Consensus       126 ~~~~~~~~~~~y~~~d~~~s~~l~~~-~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld  204 (258)
                      .. ....+.++|..+.+.+.+.+.-. .-.+.+|..... +.  +.+|+|+.|+...+.        -+...+|++|. .
T Consensus       103 ~~-~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~--~~~G~e~~yd~~~~~--------~~~~~~~~~Y~-~  169 (276)
T cd07306         103 GK-KSGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KG--FLLGAEVVYDTAKSK--------FTKYNFALGYT-N  169 (276)
T ss_pred             CC-ceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cc--eEEEEEEEEeccCCc--------EeeEEEEEEEe-c
Confidence            33 23556779999988887776543 467888887776 66  789999999887541        56788999998 4


Q ss_pred             CCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEE
Q 025077          205 PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA  255 (258)
Q Consensus       205 ~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~  255 (258)
                      ++.++-+++++.+.+.+.|-|++.|++  .+++|+....-++...+++|..
T Consensus       170 ~d~~~s~~l~~~~~l~~S~~~kv~~~l--~~g~e~~~~~~~~~~~~~vg~~  218 (276)
T cd07306         170 GDFELSLKLNNGKTLRGSYFHKVSPRL--AVGAKVTWYSGTNETTFAVGGQ  218 (276)
T ss_pred             CCeEEEEEECCCCEEEEEEEEEcCCCe--EEEEEEEEecCCCCcEEEEEEE
Confidence            788999999998999999999999974  4455555432233466666544

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.25  E-value=0.0014  Score=59.69  Aligned_cols=141  Identities=10%  Similarity=0.079  Sum_probs=96.1

Q ss_pred             eEEEEEEEe---ccceeeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEE
Q 025077          101 IVKFSVVAG---NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKH  177 (258)
Q Consensus       101 ~v~~s~v~g---~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~  177 (258)
                      .+..++.+-   .+++-+=.++.++... ......+-..|..+++.+.+.+.+. .-+-.++.+.+.++  +.+|+|+.|
T Consensus        76 ~~~~~~~~~~~~~~glk~~~~~~~~~~~-~~~~~q~~~~y~~~~~~~~l~~~~~-gp~v~~~~~~g~~~--~~~G~e~~y  151 (274)
T cd07303          76 TLGLEITVEDQLSRGLKSTFDSSFSPNT-GKKNAKIKTGYKRINLGCDVDFDIA-GPLIRGALVLGYEG--WLAGYQMVF  151 (274)
T ss_pred             cceEEEEEecccCCCeEEEEEEEECCCC-ccEEEEEeccEEcCCeeEEEEeecC-CCEEEEEEEEeecc--eEEEEEEEE
Confidence            444444432   4788888888886423 3344556668999999999999754 46778888999999  899999999


Q ss_pred             eecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEE
Q 025077          178 SFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA  255 (258)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~  255 (258)
                      +....       +....+.+|+.-.. ++...-+++++-+.+.+.|-|++.|++.+++-.+.+.+  .....+.+|..
T Consensus       152 d~~~~-------~~~~~~~~~y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~  219 (274)
T cd07303         152 ETVSR-------VTQSNFAVGYKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAK  219 (274)
T ss_pred             ecccc-------ccccceEEEEEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEE
Confidence            87432       01334444432222 45566788888899999999999998777766666643  23355555543

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=96.64  E-value=0.042  Score=46.36  Aligned_cols=49  Identities=16%  Similarity=0.066  Sum_probs=39.5

Q ss_pred             ceeEEEEEeeecCceEEEEEEcccc-------CeEEEEEEEEeCCCcceeEEEEEEEe
Q 025077          128 FSNYNAGLSFNTALFNASVNLNDKL-------ENLRASYYQELVPLTRTAVAAELKHS  178 (258)
Q Consensus       128 ~~~~~~~~~y~~~d~~~s~~l~~~~-------~~~~aS~~~kv~~~~~~~vgae~~~~  178 (258)
                      ....-+-.-|+.+||++++++.|..       ..+.+||.|.|.|+  +++|+|+-|.
T Consensus       106 ~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~--LaLG~E~~yq  161 (161)
T TIGR00989       106 PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPR--LGLGLEALWQ  161 (161)
T ss_pred             CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcc--eeeeeeeEeC
Confidence            3444445679999999999988622       26799999999999  8999999883

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=93.67  E-value=6.1  Score=36.87  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=33.1

Q ss_pred             EEcCCceEEEEEEEEeccceEEEEEEeeeccCCC------CCCeeEEEEEEe
Q 025077          212 RVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS------WIPNVRFGMAFS  257 (258)
Q Consensus       212 kvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~------~~hK~Gl~l~l~  257 (258)
                      +-|+...+++.++.++++.+.+.++.....++-+      ..+.++|++.++
T Consensus       329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~  380 (381)
T PF10082_consen  329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ  380 (381)
T ss_pred             ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence            6677777888888888888777777766654322      348899988874

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.31  E-value=0.13  Score=47.63  Aligned_cols=134  Identities=17%  Similarity=0.135  Sum_probs=91.9

Q ss_pred             ceeeeEEEEEec------------cCCcceeEEEEEeeecCceEEEEEEccc----cCeEEEEEEEEeCCCcceeEEEEE
Q 025077          112 VLSLGTDAAFDI------------STRTFSNYNAGLSFNTALFNASVNLNDK----LENLRASYYQELVPLTRTAVAAEL  175 (258)
Q Consensus       112 ~~~lG~e~~yd~------------~~~~~~~~~~~~~y~~~d~~~s~~l~~~----~~~~~aS~~~kv~~~~~~~vgae~  175 (258)
                      .-.+.+++.++.            +.+++..+.....|...|+++++.+.+-    -..+.++|-|.+.|+  ++.|+|+
T Consensus       106 ~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~--LsLG~El  183 (308)
T KOG3296|consen  106 DGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR--LSLGGEL  183 (308)
T ss_pred             CCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc--cccccee
Confidence            345666776653            3455556777778889999988887631    135778999999999  7889999


Q ss_pred             EEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEE
Q 025077          176 KHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA  255 (258)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~  255 (258)
                      -|.-..+       +.+..++..++|.. .....-+-+.-.|..+..| +++.+++...+..+.|..--+...-++.++.
T Consensus       184 ~~~~~~~-------~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~y~-~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~  254 (308)
T KOG3296|consen  184 LYQRRPG-------PEESGLSYAGRYEH-SNWDATVTLGQQGLTGTYY-QRAVEKLQMGVEFETNTRLQSTDVTAAYGYD  254 (308)
T ss_pred             EeccCCC-------ccccceeeeeeeee-cceeeEEecccccceehhh-hhhhhhhccceeEeeecccCCcceEEEEEee
Confidence            9976222       23788999999996 3444455555666666666 6666788888887777642223455555555


Q ss_pred             E
Q 025077          256 F  256 (258)
Q Consensus       256 l  256 (258)
                      |
T Consensus       255 l  255 (308)
T KOG3296|consen  255 L  255 (308)
T ss_pred             c
Confidence            4

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=91.14  E-value=7.9  Score=37.84  Aligned_cols=107  Identities=10%  Similarity=0.017  Sum_probs=64.7

Q ss_pred             eEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecCceEEEEE-EccccCeEEEEEEEEeCCCcceeEEEEEEEe
Q 025077          101 IVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVN-LNDKLENLRASYYQELVPLTRTAVAAELKHS  178 (258)
Q Consensus       101 ~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~-l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~  178 (258)
                      .++.++... .++|++.+.+.|- .=+++.+..+........+.-... ..| .-.+....=|+++|++.+  .+-+.|+
T Consensus       287 ~~el~~~~~~~d~w~~~~s~~wT-~WS~f~~l~~~~~~~~~~~~~~~~~yrD-~wt~a~G~~Y~~nd~~tl--ragiayD  362 (440)
T COG2067         287 SAELSGQHKVADQWAIHGSVKWT-DWSSFDKLDFVFTFGKTLFAKTEDGYRD-TWTVALGTTYKFNDQWTL--RAGIAYD  362 (440)
T ss_pred             EEEEeeeeccCCCeEEEEEEEEe-eccCCceEEEEEcCCCcccccccccccc-ccEEeeeceeEcCccceE--eeeeeec
Confidence            344444433 7889999998883 234565666544422233333333 454 467888889999999554  4456676


Q ss_pred             ecCCcccC--CC--CCCCceEEEEEEEeeCCCCeEEE
Q 025077          179 FSNHRSIS--DN--IPIPTSLTVGFQHGLFPSTLVKV  211 (258)
Q Consensus       179 ~~~~~~~~--~~--~~~~~~~tiG~ky~ld~~s~~Ka  211 (258)
                      -+......  ..  ++....+++|+.|.++++..+++
T Consensus       363 ~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~  399 (440)
T COG2067         363 QSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA  399 (440)
T ss_pred             CCCCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence            54321011  11  22356899999999999888875

>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional

Probab=86.98  E-value=32  Score=35.88  Aligned_cols=99  Identities=10%  Similarity=0.106  Sum_probs=69.2

Q ss_pred             ccceeeeEEEEEeccCCcceeEEEEEeeecCce-EEEEEE---------------------ccccCeEEEEEEEEeCCCc
Q 025077          110 NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF-NASVNL---------------------NDKLENLRASYYQELVPLT  167 (258)
Q Consensus       110 ~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~-~~s~~l---------------------~~~~~~~~aS~~~kv~~~~  167 (258)
                      .+.|.+.+++.||....++.+.++++.|..... .+.+..                     ....+.+.+|...+++++ 
T Consensus       612 ~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-  690 (778)
T PRK03761        612 SDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASWPIADR-  690 (778)
T ss_pred             cCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEEEecCc-
Confidence            688999999999999999999999999986665 322221                     001135677888888888 


Q ss_pred             ceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEecc
Q 025077          168 RTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQ  229 (258)
Q Consensus       168 ~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p  229 (258)
                       |.+.+...|++..+.        .....+|.+|+           +-=|.+.++|++.+.+
T Consensus       691 -w~~~g~~~ydl~~~~--------~~~~~~Gl~Y~-----------~~Cw~~~~~~~r~~~~  732 (778)
T PRK03761        691 -WSIVGAYYYDTKANK--------PAEQLLGLQYN-----------SCCWAIGVGYERKLTG  732 (778)
T ss_pred             -EEEEEEEEeeCcCCh--------hhhhhcCeeec-----------CceEEEEEEEEEEecc
Confidence             777888888886652        34557777776           2234566667776654

>PRK04423 organic solvent tolerance protein; Provisional

Probab=84.69  E-value=56  Score=34.36  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             CCeEEEEEEEeccceeeeEEEEEeccCCcceeEEEEEeeecC-ceEEEEEEc---------cccCeEEEEEEEEeCCCcc
Q 025077           99 DRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTA-LFNASVNLN---------DKLENLRASYYQELVPLTR  168 (258)
Q Consensus        99 ~P~v~~s~v~g~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~-d~~~s~~l~---------~~~~~~~aS~~~kv~~~~~  168 (258)
                      ++++-...+--.+.|.+.+++.||...+.+.+.+++++|... ...+.+...         +..+.+.+|.-.+++++  
T Consensus       617 SD~v~~~~~~~~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~--  694 (798)
T PRK04423        617 SAWVADANYMINDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPR--  694 (798)
T ss_pred             cceEEEEEEEecCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCC--
Confidence            444433333337889999999999988888888888888643 333333321         11246788888889998  


Q ss_pred             eeEEEEEEEeecCCcccCCCCCCCceEEEEEEEe
Q 025077          169 TAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG  202 (258)
Q Consensus       169 ~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~  202 (258)
                      |.+.+...|++..+.        .....+|.+|+
T Consensus       695 W~~~g~~~ydl~~~~--------~~e~~~GleY~  720 (798)
T PRK04423        695 WSAVGRYYYSLLDKK--------PLEIIGGVQWD  720 (798)
T ss_pred             EEEEEEEEEeCcCCc--------chhhhcCcEEc
Confidence            778888888886552        34456677776

>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A

Probab=84.28  E-value=29  Score=30.73  Aligned_cols=103  Identities=11%  Similarity=0.013  Sum_probs=54.0

Q ss_pred             ceeEEEEEeeecC--ceEEEEEEcc------ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEE
Q 025077          128 FSNYNAGLSFNTA--LFNASVNLND------KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGF  199 (258)
Q Consensus       128 ~~~~~~~~~y~~~--d~~~s~~l~~------~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~  199 (258)
                      ...|.+++.|...  .+.+++....      ..+.+..+--..+ ..  +.++++....-....   ........+.+++
T Consensus       183 ~~~~~~~~~Y~~~~~~~~~~~~y~~~~~~~~~~~~~~~ga~y~~-~~--~~l~a~y~~~~~~~~---~~~~~~~~~~~~~  256 (311)
T PF13609_consen  183 DDVYGAGASYSFGGFGLTVAAGYSSADDNGGDNDAWGVGASYNF-GG--FTLGAEYGQADNDGS---GGDSDQDAYYVGA  256 (311)
T ss_dssp             TEEEEEEEEEEET-SSEEEEEEEEEEECCETCEEEEEEEEEEEC-SS--EEEEEEEEEEEEECC---CCCEEEEEEEEEE
T ss_pred             ccceEEEEEEEcCCcceEEEeeeecccccchheeeEEeeEEEEE-Cc--EEEEEEEEEEEecCc---cccccceEEEEEE
Confidence            3345666666644  4444443331      0123444444555 33  556666554211100   0001256788888


Q ss_pred             EEeeCCCCeEEEEEcC----------CceEEEEEEEEeccceEEEEEE
Q 025077          200 QHGLFPSTLVKVRVNT----------NGKVGAHVQQSFWQKFSIAVSG  237 (258)
Q Consensus       200 ky~ld~~s~~Kakvns----------~g~vg~~~~~~l~p~v~ltls~  237 (258)
                      +|.+ +...+.+....          .-.+++.++++|.|++++-..-
T Consensus       257 ~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~a~y  303 (311)
T PF13609_consen  257 AYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSLYAEY  303 (311)
T ss_dssp             EEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEEEEEE
Confidence            8888 44666664432          2348888888888886665544

...

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=83.16  E-value=37  Score=31.60  Aligned_cols=67  Identities=16%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             eeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC
Q 025077          169 TAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS  245 (258)
Q Consensus       169 ~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~  245 (258)
                      +.+.+.+.|.+..          -+++++.+...+.+....-+--.-.-.+++.+.|+|+|++.+.+++.....+..
T Consensus       259 ~~~~~~l~w~pt~----------~t~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~  325 (381)
T PF10082_consen  259 PSWDASLTWSPTP----------KTTVTLSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQ  325 (381)
T ss_pred             eEEEEEEEEeccC----------ceEEEEEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcC
Confidence            4556677776644          478888888888666344333333456888899999999999999988765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3emn_X	295	Voltage-dependent anion-selective channel protein;	3e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  108 bits (270), Expect = 3e-28
 Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 78/304 (25%)

Query: 5   PGLYIDIGKKARDLLYKDYGDKQPANHFRYDC---------------------------- 36
           P  Y D+GK ARD+  K Y         + D                             
Sbjct: 16  PPTYADLGKSARDVFTKGY----GFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLE 71

Query: 37  ---VDSNFDVSCQC---------------DAIVPGLSTAFRSIIPDSGG-----VELRYL 73
                + + ++                  D +  GL   F S    + G     ++  Y 
Sbjct: 72  TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 131

Query: 74  HDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNA 133
            ++      +                  ++ ++V G      G    F+ S    +  N 
Sbjct: 132 REHINLGCDVDFDIA----------GPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNF 181

Query: 134 GLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPT 193
            + + T  F    N+ND       S YQ++    +   A  L  +  N           T
Sbjct: 182 AVGYKTDEFQLHTNVND-GTEFGGSIYQKVNK--KLETAVNLAWTAGNS---------NT 229

Query: 194 SLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFG 253
              +  ++ + P      +VN +  +G    Q+      + +S   D +  +     + G
Sbjct: 230 RFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVN-AGGHKLG 288

Query: 254 MAFS 257
           +   
Sbjct: 289 LGLE 292

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 39/210 (18%), Positives = 63/210 (30%), Gaps = 53/210 (25%)

Query: 1   MSNSPGLYIDIGKKARDLL-YKDYG-------DKQPANHFRYDCVDSNFDVSCQCDAIVP 52
            SN       I  + R LL  K Y        + Q A  +        F++SC+   I+ 
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA------FNLSCK---IL- 269

Query: 53  GLSTAFRSIIPDSGGVELRYL---HDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAG 109
            L+T F+ +          ++   H     T             +   L           
Sbjct: 270 -LTTRFKQVTDFLSAATTTHISLDHHSMTLT-----------PDEVKSL-----LLKYLD 312

Query: 110 NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLN-DKLENLRASYYQELVPLTR 168
                L  +     + R  S     +    A ++   ++N DKL  +  S    L P   
Sbjct: 313 CRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--- 368

Query: 169 TAVAAELKHSFSNHRSIS---DNIPIPTSL 195
               AE +  F     +S    +  IPT L
Sbjct: 369 ----AEYRKMF---DRLSVFPPSAHIPTIL 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.08
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	90.32
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	88.25
3nsg_A	341	Outer membrane protein F; porin, beta barrel, beta	86.77
3dwo_X	451	Probable outer membrane protein; beta barrel; HET:	85.49
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	85.08
2por_A	301	Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SC	83.47
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	82.42

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=2.3e-62  Score=446.20  Aligned_cols=234  Identities=20%  Similarity=0.314  Sum_probs=219.9

Q ss_pred             CCCCccccccccccccccCCCCCC-CCeeE------------------------------EEeecc----------ccce
Q 025077            3 NSPGLYIDIGKKARDLLYKDYGDK-QPANH------------------------------FRYDCV----------DSNF   41 (258)
Q Consensus         3 ~~P~~y~DlgK~arDll~k~y~~~-~k~~~------------------------------~~~~~~----------~~~l   41 (258)
                      ++||+|+||||.|||||+|||+|+ +||++                              |+++++          +++|
T Consensus        14 ~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l   93 (295)
T 3emn_X           14 AVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTL   93 (295)
T ss_dssp             CSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCE
T ss_pred             CCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcE
Confidence            579999999999999999999999 88777                              666653          4559


Q ss_pred             eEEEEEcc-CCCCeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceee
Q 025077           42 DVSCQCDA-IVPGLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSL  115 (258)
Q Consensus        42 ~t~i~~~~-~~~Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~l  115 (258)
                      .++|++++ ++||||+++++.+ |+    ++|+++||+||+++++++++++.          .+|+++.|+|+|+++|++
T Consensus        94 ~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~----------~~P~i~~s~v~g~~~~~~  163 (295)
T 3emn_X           94 GTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDI----------AGPSIRGALVLGYEGWLA  163 (295)
T ss_dssp             EEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECT----------TCCEEEEEEEEEETTEEE
T ss_pred             EEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEecc----------CCCEEEEEEEEeeCCEEE
Confidence            99999999 8999999999996 76    57999999999999999999964          499999999999999999


Q ss_pred             eEEEEEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceE
Q 025077          116 GTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSL  195 (258)
Q Consensus       116 G~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~  195 (258)
                      |+|+.||++++++++|+++++|+.+||+++++++| ++.+++|||||++|+  +++|+|+.|+++.+         ++++
T Consensus       164 G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~--~~~g~e~~~~~~~~---------~~~~  231 (295)
T 3emn_X          164 GYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKK--LETAVNLAWTAGNS---------NTRF  231 (295)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSS--EEEEEEEEEETTEE---------EEEE
T ss_pred             EEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCc--eEEEEEEEEeccCC---------CcEE
Confidence            99999999999999999999999999999999997 789999999999999  89999999999877         9999


Q ss_pred             EEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC-CCCeeEEEEEEeC
Q 025077          196 TVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS-WIPNVRFGMAFSS  258 (258)
Q Consensus       196 tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~-~~hK~Gl~l~l~~  258 (258)
                      +||+||++|+++++||||||+|+|+++|||+|+|++++++|++||+++++ +.||||++|+||.
T Consensus       232 tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~  295 (295)
T 3emn_X          232 GIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA  295 (295)
T ss_dssp             EEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred             EEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999986 6899999999984

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.08  E-value=0.0022  Score=57.73  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=120.7

Q ss_pred             EEEEEccC-CCCeEEEEEEE-ccC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEE---eccce
Q 025077           43 VSCQCDAI-VPGLSTAFRSI-IPD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVA---GNTVL  113 (258)
Q Consensus        43 t~i~~~~~-~~Glk~~~~~~-~p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~---g~~~~  113 (258)
                      .++++.-. ..|+..+.... -|+    +|.++.+|+....+++.+.....          .|.+.. ...+   ..+++
T Consensus        39 ~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t----------~n~l~t-~i~~~~~l~~Gl  107 (295)
T 3emn_X           39 IKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNT----------DNTLGT-EITVEDQLARGL  107 (295)
T ss_dssp             EEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEET----------TSCEEE-EEEEESSSSTTE
T ss_pred             EEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeC----------CCcEEE-EEEEccccCCce
Confidence            45555543 46788777665 463    67899999999988887777665          244332 2222   25777


Q ss_pred             eeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEcc--ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCC
Q 025077          114 SLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLND--KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPI  191 (258)
Q Consensus       114 ~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~--~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~  191 (258)
                      -+-.+..|.+..+ -....+.+.|..+.+.+...+.-  .+-.+.+|..-- .+.  +.+|+|+.|+...+.        
T Consensus       108 k~~~~~~~~P~~~-~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g-~~~--~~~G~e~~yd~~~~~--------  175 (295)
T 3emn_X          108 KLTFDSSFSPNTG-KKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG-YEG--WLAGYQMNFETSKSR--------  175 (295)
T ss_dssp             EEEEEEEEETTTT-EEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE-ETT--EEEEEEEEEETTTTE--------
T ss_pred             EEEEEEEECCCCC-CcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe-eCC--EEEEEEEEEEeCCCC--------
Confidence            7778888865443 23567778999999999555422  234677765332 367  899999999986551        


Q ss_pred             CceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeee
Q 025077          192 PTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD  240 (258)
Q Consensus       192 ~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD  240 (258)
                      -+...+|.+|.- ++..+-+++++...+.+.|-|++.|++.+++-...+
T Consensus       176 ~t~~n~~~gY~~-~d~~~s~~l~~~~~~~aSy~qkvs~~~~~g~e~~~~  223 (295)
T 3emn_X          176 VTQSNFAVGYKT-DEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWT  223 (295)
T ss_dssp             EEEEEEEEEEEC-SSEEEEEEEETTTEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             eeeEEEEEEEcC-CCEEEEEEECCCCeEEEEEEEECCCceEEEEEEEEe
Confidence            456888999984 788888999998899999999999976544433333

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=90.32  E-value=11  Score=34.68  Aligned_cols=85  Identities=12%  Similarity=0.055  Sum_probs=58.0

Q ss_pred             cCeEEEEEEEEeCCCcceeEEEEEEEeecCC-c---------c-------cCCCCCCCceEEEEEEEeeCCCCeEEEEEc
Q 025077          152 LENLRASYYQELVPLTRTAVAAELKHSFSNH-R---------S-------ISDNIPIPTSLTVGFQHGLFPSTLVKVRVN  214 (258)
Q Consensus       152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~-~---------~-------~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn  214 (258)
                      ...+.++..|+++++  +.+.+++.|..-+. -         .       ...+-.....+.||+.|++.+..++||=++
T Consensus       278 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~  355 (439)
T 3bs0_A          278 PASLTLGLAHQFNER--WVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYS  355 (439)
T ss_dssp             CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEE
T ss_pred             CcEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeE
Confidence            467999999999999  88888888853211 0         0       000112245789999999998899998542


Q ss_pred             ------------------CCceEEEEEEEEeccceEEEEEEe
Q 025077          215 ------------------TNGKVGAHVQQSFWQKFSIAVSGE  238 (258)
Q Consensus       215 ------------------s~g~vg~~~~~~l~p~v~ltls~~  238 (258)
                                        +...++++...++.+++.+.++.+
T Consensus       356 yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~  397 (439)
T 3bs0_A          356 YAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS  397 (439)
T ss_dssp             ECC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred             cccCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence                              223467777777777776666654

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=88.25  E-value=16  Score=33.78  Aligned_cols=84  Identities=13%  Similarity=0.018  Sum_probs=53.0

Q ss_pred             cCeEEEEEEEEeCCCcceeEEEEEEEeecCCc-c-------------cCCCCCCCceEEEEEEEeeCCCCeEEEEEc--C
Q 025077          152 LENLRASYYQELVPLTRTAVAAELKHSFSNHR-S-------------ISDNIPIPTSLTVGFQHGLFPSTLVKVRVN--T  215 (258)
Q Consensus       152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~-~-------------~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn--s  215 (258)
                      .+.+.++..|+++++  +.+.+++.|..-+.- .             ...+-.....+.+|+.|++.+..++||=+.  +
T Consensus       272 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~yd~  349 (427)
T 3pgu_A          272 PEMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDD  349 (427)
T ss_dssp             CEEEEEEEEEEEETT--EEEEEEEEEEEESSCSCEEEEEETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred             CcEEEEEEEEecCCC--EEEEEEEEEEEeccccceEEEcCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEEEcc
Confidence            367999999999999  788889988532110 0             000111246788999999888888887332  1


Q ss_pred             C----------------ceEEEEEEEEeccceEEEEEE
Q 025077          216 N----------------GKVGAHVQQSFWQKFSIAVSG  237 (258)
Q Consensus       216 ~----------------g~vg~~~~~~l~p~v~ltls~  237 (258)
                      .                -.++++...++.+++++.++.
T Consensus       350 spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~~~id~ay  387 (427)
T 3pgu_A          350 SPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGV  387 (427)
T ss_dssp             CCCCGGGCBTTBCCSCEEEEEEEEEEESSSSEEEEEEE
T ss_pred             CCCCcccccccccCCCCEEEEEeEEEEcCCCcEEEEEE
Confidence            1                125666666666665555554

>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}

Probab=86.77  E-value=17  Score=32.46  Aligned_cols=142  Identities=10%  Similarity=0.016  Sum_probs=87.8

Q ss_pred             cceeeeEEEEEeccC------CcceeEEEEEeeecCceEEEEEEcc---------------ccCeEEEEEEEEeCCCcce
Q 025077          111 TVLSLGTDAAFDIST------RTFSNYNAGLSFNTALFNASVNLND---------------KLENLRASYYQELVPLTRT  169 (258)
Q Consensus       111 ~~~~lG~e~~yd~~~------~~~~~~~~~~~y~~~d~~~s~~l~~---------------~~~~~~aS~~~kv~~~~~~  169 (258)
                      .+|.+++...+.-..      ..-..|.+++.|....+.+.+-...               +.+.+.+.--..+.+   +
T Consensus       147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~  223 (341)
T 3nsg_A          147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN---V  223 (341)
T ss_dssp             SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT---E
T ss_pred             CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC---E
Confidence            356666666664322      2334689999999999988876532               113345555556655   4


Q ss_pred             eEEEEEEEeecCCcccCC-------CCCCCceEEEEEEEeeCCCCeEEEE-----EcC----------CceEEEEEEEEe
Q 025077          170 AVAAELKHSFSNHRSISD-------NIPIPTSLTVGFQHGLFPSTLVKVR-----VNT----------NGKVGAHVQQSF  227 (258)
Q Consensus       170 ~vgae~~~~~~~~~~~~~-------~~~~~~~~tiG~ky~ld~~s~~Kak-----vns----------~g~vg~~~~~~l  227 (258)
                      .+++..++.-... ..+.       ...+...+++|++|.+.|...+++-     .++          .-++.+.++..|
T Consensus       224 ~l~a~Y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~L  302 (341)
T 3nsg_A          224 YLAAVYAETRNMS-IVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYF  302 (341)
T ss_dssp             EEEEEEEEESSCC-CEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEEEEEEEecc-ccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEe
Confidence            4565555432111 0000       1123568999999999997666652     221          235889999999


Q ss_pred             ccceEEEEEEeeeccC--------CCCCCeeEEEEEE
Q 025077          228 WQKFSIAVSGETDIRA--------SSWIPNVRFGMAF  256 (258)
Q Consensus       228 ~p~v~ltls~~iD~~~--------~~~~hK~Gl~l~l  256 (258)
                      .+...+=+...++.-+        .+....+++||..
T Consensus       303 SKrT~lY~~y~~~~~~~~~~~~~~~~~dd~~~vGlry  339 (341)
T 3nsg_A          303 NKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITY  339 (341)
T ss_dssp             CSSEEEEEEEEEECCCCCSSCTTTTCSSCEEEEEEEE
T ss_pred             cCCEEEEEEEEEecccCccccccccCcCCEEEEEEEE
Confidence            9998888877776521        2245789999864

>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}

Probab=85.49  E-value=23  Score=32.87  Aligned_cols=86  Identities=10%  Similarity=-0.016  Sum_probs=58.2

Q ss_pred             cCeEEEEEEEEeCCCcceeEEEEEEEeecCCc---c----------cCCCCCCCceEEEEEEEeeCCCCeEEEEEc--C-
Q 025077          152 LENLRASYYQELVPLTRTAVAAELKHSFSNHR---S----------ISDNIPIPTSLTVGFQHGLFPSTLVKVRVN--T-  215 (258)
Q Consensus       152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~---~----------~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn--s-  215 (258)
                      .+.+.++..|+++++  +.+.+++.|.--+.-   .          ...+-.....+++|+.|++.+..++||=+.  + 
T Consensus       285 P~~~~lg~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~~yd~s  362 (451)
T 3dwo_X          285 PAYASLDWVHQFNDR--LSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQT  362 (451)
T ss_dssp             CCEEEEEEEEECSSS--EEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEEEEECC
T ss_pred             CcEEEEEEEEEeCCC--EEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEEEEccC
Confidence            467999999999999  788888888642210   0          000112356899999999988889988332  1 


Q ss_pred             ---------------CceEEEEEEEEec--cceEEEEEEee
Q 025077          216 ---------------NGKVGAHVQQSFW--QKFSIAVSGET  239 (258)
Q Consensus       216 ---------------~g~vg~~~~~~l~--p~v~ltls~~i  239 (258)
                                     ...++++...++.  +++.|.++...
T Consensus       363 p~~~~~~~~~~P~~~~~~~s~G~~y~~~~~~~~~ld~~y~y  403 (451)
T 3dwo_X          363 PTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSR  403 (451)
T ss_dssp             SCCTTTCCSSSCCCCEEEEEEEEEEECSSSSSEEEEEEEEE
T ss_pred             CCCcccccccccCCCCEEEEEeEEEEecCCCCeEEEEEEEE
Confidence                           2236777777787  77777666543

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=85.08  E-value=23  Score=32.38  Aligned_cols=87  Identities=9%  Similarity=0.046  Sum_probs=59.1

Q ss_pred             cCeEEEEEEEEeCCCcceeEEEEEEEeecCC--c----ccC-------------CCCCCCceEEEEEEEeeCCCCeEEEE
Q 025077          152 LENLRASYYQELVPLTRTAVAAELKHSFSNH--R----SIS-------------DNIPIPTSLTVGFQHGLFPSTLVKVR  212 (258)
Q Consensus       152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~--~----~~~-------------~~~~~~~~~tiG~ky~ld~~s~~Kak  212 (258)
                      ...+.++..|+++++  +.+.+++.|..-+.  .    .+.             .+-.....+.+|+.|++.+..++||=
T Consensus       278 P~~~~~g~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG  355 (441)
T 3bry_A          278 PAQLTVGISHQFNDQ--LSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGG  355 (441)
T ss_dssp             CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEE
T ss_pred             ccEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEe
Confidence            467999999999998  78888888853111  0    000             01122558899999999888899984


Q ss_pred             Ec------------------CCceEEEEEEEEeccceEEEEEEeee
Q 025077          213 VN------------------TNGKVGAHVQQSFWQKFSIAVSGETD  240 (258)
Q Consensus       213 vn------------------s~g~vg~~~~~~l~p~v~ltls~~iD  240 (258)
                      +.                  +...++++...++.+.+.|.++...-
T Consensus       356 ~~yd~s~~~~~~~~~~~P~~~~~~~s~G~gy~~~~~~~ld~ay~y~  401 (441)
T 3bry_A          356 FHYAQEAIPGNMLLAVVPATPTTSLTGGVSYAIGKNDVIDFALSVA  401 (441)
T ss_dssp             EEEEEC---------------CEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             eecccCCCCcccccccccCcCceEEEeeeEEEcCCCeEEEEEEEEE
Confidence            32                  23346777777787777777776653

>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*

Probab=83.47  E-value=22  Score=31.01  Aligned_cols=142  Identities=8%  Similarity=-0.008  Sum_probs=80.2

Q ss_pred             cceeeeEEEEEecc----CCcceeEEEEEeeecCceEEEEEEccc----------cCeEEEEEEEEeCCCcceeEEEEEE
Q 025077          111 TVLSLGTDAAFDIS----TRTFSNYNAGLSFNTALFNASVNLNDK----------LENLRASYYQELVPLTRTAVAAELK  176 (258)
Q Consensus       111 ~~~~lG~e~~yd~~----~~~~~~~~~~~~y~~~d~~~s~~l~~~----------~~~~~aS~~~kv~~~~~~~vgae~~  176 (258)
                      .+|.+++...+...    ...-..|.+++.|...++.+.+-....          .+.+.++.-..+.+   +.+++...
T Consensus       126 gGf~~~a~Y~~~~~~~~~~~~~~~~~~~~~Y~~G~l~v~a~Y~~~~~~~~~~~~~~~~~~lgasY~~g~---~~l~~~Y~  202 (301)
T 2por_A          126 GAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFGA---TNVKAYYA  202 (301)
T ss_dssp             TTEEEEEEECCSBSTTSSCBCCEEEEEEEEEEETTEEEEEEEEEEECSCTTTSCCEEEEEEEEEEEETT---EEEEEEEE
T ss_pred             CCEEEEEEEEeCCCCCCCCCCCcEEEEEEEEEeCCeEEEEEEEEccCCCccccccccEEEEEEEEEEcc---EEEEEEEE
Confidence            46676666666421    122356889999998888888865421          12344444446665   23333332


Q ss_pred             EeecCCc--------ccCC---CCCCCceEEEEE--EEeeCCCCeEEEEEc-----CCceEEEEEEEEeccceEEEEEEe
Q 025077          177 HSFSNHR--------SISD---NIPIPTSLTVGF--QHGLFPSTLVKVRVN-----TNGKVGAHVQQSFWQKFSIAVSGE  238 (258)
Q Consensus       177 ~~~~~~~--------~~~~---~~~~~~~~tiG~--ky~ld~~s~~Kakvn-----s~g~vg~~~~~~l~p~v~ltls~~  238 (258)
                      ..-....        .+..   ...+.+.+.+|+  +|.+.+...+++...     +...+++.+++.|.|++++-.+-.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~  282 (301)
T 2por_A          203 DGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIA  282 (301)
T ss_dssp             EEEEEHHHHHHHTTCCCCSSCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             eccCccccccccccccccccccccccCceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEE
Confidence            2110000        0000   001145689999  999977666777653     235789999999999988866654


Q ss_pred             eeccCCCCCCeeEEEEEE
Q 025077          239 TDIRASSWIPNVRFGMAF  256 (258)
Q Consensus       239 iD~~~~~~~hK~Gl~l~l  256 (258)
                      .+-.+ +..-.+-+|+.+
T Consensus       283 ~~~~~-~~~~~~~~Gvr~  299 (301)
T 2por_A          283 DNDLP-NSDMVADLGVKF  299 (301)
T ss_dssp             EECSS-SCCCEEEEEEEE
T ss_pred             eccCC-CCceeEEEEeEE
Confidence            44311 112456666554

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=82.42  E-value=30  Score=31.83  Aligned_cols=135  Identities=12%  Similarity=-0.037  Sum_probs=73.1

Q ss_pred             eEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecCce--EEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEE
Q 025077          101 IVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF--NASVNLNDKLENLRASYYQELVPLTRTAVAAELKH  177 (258)
Q Consensus       101 ~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~--~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~  177 (258)
                      .+..+.... .++|++.+++.|..=+ ++....+  .+....-  .......| ...+++..-+++++++.+-+|  +.|
T Consensus       274 ~~~~g~~~~~~~~~~l~~d~~~~~WS-~~~~~~~--~~~~g~~~~~~~~~~~D-~~~~~lG~eY~~~~~~~lRaG--~~y  347 (427)
T 3pgu_A          274 MWEVSGYNRVDPQWAIHYSLAYTSWS-QFQQLKA--TSTSGDTLFQKHEGFKD-AYRIALGTTYYYDDNWTFRTG--IAF  347 (427)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEES-SCSCEEE--EEETTEEEEEECCCCEE-EEEEEEEEEEECSSSEEEEEE--EEE
T ss_pred             EEEEEEEEecCCCEEEEEEEEEEEec-cccceEE--EcCCCcccccccCCcee-ccEEEEEEEEEcCCCEEEEEE--EEE
Confidence            445544443 6889999999885311 1222222  1111111  11112233 356788888999999555555  444


Q ss_pred             eecC--Cc--ccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEE---EEEEeeeccCCCCCCee
Q 025077          178 SFSN--HR--SISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSI---AVSGETDIRASSWIPNV  250 (258)
Q Consensus       178 ~~~~--~~--~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~l---tls~~iD~~~~~~~hK~  250 (258)
                      .-..  ..  .+.........+++|+.|++.+.          ..|.++|++......++   .+.++.+.+    .+-+
T Consensus       348 d~spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~----------~~id~ay~y~~~~~~~~~~~~~~~~~~~~----a~~~  413 (427)
T 3pgu_A          348 DDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKD----------ASVDVGVSYMHGQSVKINEGPYQFESEGK----AWLF  413 (427)
T ss_dssp             EECCCCGGGCBTTBCCSCEEEEEEEEEEESSSS----------EEEEEEEEEEEECCEEEEETTEEEEEEEE----EEEE
T ss_pred             ccCCCCcccccccccCCCCEEEEEeEEEEcCCC----------cEEEEEEEEEecCcceEeccceEEEEEEE----EEEE
Confidence            3322  10  11111123567999999998653          46677777777666666   344444332    4667


Q ss_pred             EEEEE
Q 025077          251 RFGMA  255 (258)
Q Consensus       251 Gl~l~  255 (258)
                      |+++.
T Consensus       414 g~~~~  418 (427)
T 3pgu_A          414 GTNFN  418 (427)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            77664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	83.81

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=83.81  E-value=10  Score=31.18  Aligned_cols=84  Identities=13%  Similarity=0.025  Sum_probs=57.7

Q ss_pred             CeEEEEEEEEeCCCcceeEEEEEEEeecCCc--------------ccCCCCCCCceEEEEEEEeeCCCCeEEEEEc----
Q 025077          153 ENLRASYYQELVPLTRTAVAAELKHSFSNHR--------------SISDNIPIPTSLTVGFQHGLFPSTLVKVRVN----  214 (258)
Q Consensus       153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~--------------~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn----  214 (258)
                      ..+.+++-+++.++  +.+.+++.|..-+.-              .+..+-.....+.+|+.|.+.+...+|+-+.    
T Consensus       273 ~~~~~G~~~~~~~~--~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~  350 (427)
T d1t16a_         273 EMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDS  350 (427)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECC
T ss_pred             cEEEEEEEEEeccc--eeEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccC
Confidence            57888999999999  777878877431110              0000011257889999999988888998765    


Q ss_pred             --------------CCceEEEEEEEEeccceEEEEEEe
Q 025077          215 --------------TNGKVGAHVQQSFWQKFSIAVSGE  238 (258)
Q Consensus       215 --------------s~g~vg~~~~~~l~p~v~ltls~~  238 (258)
                                    +.-.+++++.-++.+.+.+.++.+
T Consensus       351 ~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~  388 (427)
T d1t16a_         351 PVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVS  388 (427)
T ss_dssp             SSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEE
T ss_pred             CCCcccccccccCCCCEEEEEEEEEEcCCCeEEEEEEE
Confidence                          223478888888888877777665