Citrus Sinensis ID: 025089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTSDAAAKAGPSQPAAAATPTEVVVAA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccccHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHccccccccccccEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mstfdsvdsvpvaeythsfddtAEQLnsavdlsddnnnssfqsgddafasqtsvygeyadggsdgpilpppsdmvpeegFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELipnevpaiEKKKakrdqekkpsivviqgpkpgkptnlSRMRQIIIKLkhntpahlkpspppasapatdtktsdaaakagpsqpaaaatptEVVVAA
Flexible Loop (DISEMBL)
mstfdsvdsvpVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRleekekkeKEMLNQIIEEaeeyklefyrKSIVtrennkasnrereKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKkakrdqekkpsivviqgpkpgkptnlSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTSDAAAKAGpsqpaaaatPTEVVVAA
Low Complexity Region (SEG)
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLeekekkekeMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEkkkakrdqekkPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLkpspppasapatdtktsdaaakagpsqpaaaatptevvvaa
Disordered region (IsUnstruct)
**********************************************************************************************************IIEEAEEYKLEFYRKSIV**************LFVASQQKFHDEAYKNYWKAIAELIPNEV**************************************II***************************************************
Disordered Region (DISOPRED)
**********************************************************************************REWR************************AEEYKLEFYRKS****************LFVASQQK*HDEAYKNYWKAIAELIPNE********************************LSRMRQIIIKLKH***********************************************
Disordered Region (DISEMBL)
*********VPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIE***********PSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTP********************************************
Disordered Region (DISPRO)
*************************************************S***VYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTP*************************************T**VV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTSDAAAKAGPSQPAAAATPTEVVVAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
O04209	258	Clathrin light chain 2 OS	yes	no	0.899	0.899	0.533	1e-60
F4J5M9	258	Clathrin light chain 3 OS	no	no	0.608	0.608	0.662	2e-49
Q9SKU1	338	Clathrin light chain 1 OS	no	no	0.577	0.440	0.686	1e-47
Q7XKE9	301	Clathrin light chain 1 OS	yes	no	0.577	0.495	0.68	7e-46
Q5Z402	291	Clathrin light chain 2 OS	no	no	0.573	0.508	0.646	4e-42
Q6Z3A8	363	Clathrin light chain 3 OS	no	no	0.577	0.410	0.544	7e-42

>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/266 (53%), Positives = 187/266 (70%), Gaps = 34/266 (12%)

Query: 5   DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
           D+ +SVPV   + SFD  D+    + ++ + D        S DD FA+ +S YG Y++G 
Sbjct: 15  DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63

Query: 62  ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64  GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123

Query: 115 KLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKK 174
           K EF++K  VT ENNKA+NRE+EKL++ +Q+KF+ E+ KNYWKAIAEL+P EVP IEK++
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRR 183

Query: 175 AKRDQE--KKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTK 232
            K++Q+  KKP++ VIQGPKPGKPT+L+RMRQI++KLKHN P+HLK +  P S  A    
Sbjct: 184 GKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEA---- 239

Query: 233 TSDAAAKAGPSQPAAAATPTEVVVAA 258
                  A P +      PTE V AA
Sbjct: 240 -------AAPPKNVPETKPTEAVTAA 258

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 123/160 (76%), Gaps = 3/160 (1%)

Query: 67  ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126
           ILPPPS M  EEGFALREWRR NA+RLEEKEK+EKEM+ QI+E AE+YK EFY K  VT 
Sbjct: 85  ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTI 144

Query: 127 ENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIV 186
           ENNK  NRE+EK F+ +Q+KF+ EA KN WKAIAELIP EVP IE +  K+   K  +I 
Sbjct: 145 ENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKK---KTATIT 201

Query: 187 VIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASA 226
           VIQGPKPGKPT+LSRMRQ++ KLKHN P H+KP  P  S 
Sbjct: 202 VIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPSG 241

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 118/150 (78%), Gaps = 1/150 (0%)

Query: 63  SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122
           SDGPILP P++M  EEGF  REWRR N I LEEKEKKEKEM NQII EAE++K  FY K 
Sbjct: 93  SDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKR 151

Query: 123 IVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKK 182
             T E NK  NRE+EKL+ A+Q+KFH E  K+YWKAIAELIP EVP IEKK+ K+D +KK
Sbjct: 152 DKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKK 211

Query: 183 PSIVVIQGPKPGKPTNLSRMRQIIIKLKHN 212
           PS+ VIQGPKPGKPT+L RMRQI +KLK N
Sbjct: 212 PSVNVIQGPKPGKPTDLGRMRQIFLKLKTN 241

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica GN=Os04g0679100 PE=2 SV=1

 Score =  184 bits (466), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 121/150 (80%), Gaps = 1/150 (0%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           G DGPILPPP+ M  EEG  LREWRR+NAI LEEKE+KEKE+  QI+ EAEE+K  FY K
Sbjct: 92  GGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEKELRAQILAEAEEFKKAFYEK 151

Query: 122 SIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEK 181
            I   E NK  NREREK+FVA Q+KFH EA K YWK+I+ELIP+E+  IE K+ K+D++K
Sbjct: 152 RIQNCETNKVHNREREKIFVAGQEKFHAEADKQYWKSISELIPHEIATIE-KRGKKDKDK 210

Query: 182 KPSIVVIQGPKPGKPTNLSRMRQIIIKLKH 211
           KPSI VIQGPKPGKPT+LSRMRQI++KLKH
Sbjct: 211 KPSITVIQGPKPGKPTDLSRMRQILVKLKH 240

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica GN=Os06g0731800 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 121/150 (80%), Gaps = 2/150 (1%)

Query: 64  DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSI 123
           +GP+LPPP+ M  +EGF LREWRR+NAI LEEKEKKEKEM NQII +A+E+K  F  K  
Sbjct: 76  NGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRK 135

Query: 124 VTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKA--KRDQEK 181
           +  E +K  NREREKL++A+Q+KFH  A K YWKAI+ELIP+E+  IEK+ A   +D+EK
Sbjct: 136 LNVETSKDQNREREKLYLANQEKFHAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEK 195

Query: 182 KPSIVVIQGPKPGKPTNLSRMRQIIIKLKH 211
           KP IVVIQGPKPGKPT++SRMRQI++KLKH
Sbjct: 196 KPGIVVIQGPKPGKPTDMSRMRQILLKLKH 225

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica GN=Os07g0461500 PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 117/158 (74%), Gaps = 9/158 (5%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           G DGP+LPPP  M  EEG   REWRR+NA+ LEEKE+KE+E   +II EA+E+K  F  K
Sbjct: 133 GDDGPVLPPPEAM-KEEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEK 191

Query: 122 SIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQE- 180
             +  + N+A NR+REKLF+A Q+KFH EA K YWKAIAE++P+E+P +EK+  +R+++ 
Sbjct: 192 RKLNGDTNRAQNRDREKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGKRREKQS 251

Query: 181 -------KKPSIVVIQGPKPGKPTNLSRMRQIIIKLKH 211
                  K+P +VV+QG KPGKPT+LSRMRQ+++KLK 
Sbjct: 252 AEANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLKQ 289

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
255571907	268	conserved hypothetical protein [Ricinus	0.848	0.817	0.702	7e-68
224098537	258	predicted protein [Populus trichocarpa]	0.976	0.976	0.537	4e-66
224112533	252	predicted protein [Populus trichocarpa]	0.910	0.932	0.54	7e-65
225448385	319	PREDICTED: clathrin light chain 2-like [	0.763	0.617	0.736	8e-62
255574399	282	conserved hypothetical protein [Ricinus	0.984	0.900	0.501	3e-61
147766743	319	hypothetical protein VITISV_014565 [Viti	0.763	0.617	0.730	4e-61
449460303	290	PREDICTED: clathrin light chain 3-like [	0.844	0.751	0.589	7e-61
449516147	290	PREDICTED: clathrin light chain 2-like [	0.848	0.755	0.586	9e-61
18405251	258	Clathrin light chain protein [Arabidopsi	0.899	0.899	0.533	6e-59
356494973	260	PREDICTED: uncharacterized protein LOC10	0.751	0.746	0.666	9e-59

>gi|255571907|ref|XP_002526896.1| conserved hypothetical protein [Ricinus communis] gi|223533795|gb|EEF35527.1| conserved hypothetical protein [Ricinus communis]

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 182/225 (80%), Gaps = 6/225 (2%)

Query: 40  SFQSGDDAFAS---QTSVYGEYA---DGGSDGPILPPPSDMVPEEGFALREWRRENAIRL 93
           SF   DD F S   Q + Y ++A   +GGSDGPILPPPS M  EEGFALREWRRENA++L
Sbjct: 44  SFTGNDDVFESHHHQPAAYVDFASEENGGSDGPILPPPSGMEAEEGFALREWRRENALKL 103

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYK 153
           EEKEK+EKE+L+QII+EA+EYK+EFYRK  +T ENNKA+NRE+EK+FVA+Q+KFH EA K
Sbjct: 104 EEKEKREKEILSQIIQEADEYKVEFYRKREITCENNKATNREKEKVFVANQEKFHAEADK 163

Query: 154 NYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNT 213
           N+WKAIAELIPNEVPAIEKK+ K+DQEKKP I VIQGPKPGKPT LSRMRQI+IKLKHNT
Sbjct: 164 NFWKAIAELIPNEVPAIEKKRGKKDQEKKPGITVIQGPKPGKPTELSRMRQILIKLKHNT 223

Query: 214 PAHLKPSPPPASAPATDTKTSDAAAKAGPSQPAAAATPTEVVVAA 258
           P HLKPSPPP +APA DTKTSD AA + P   A   T  E V  A
Sbjct: 224 PPHLKPSPPPPAAPAKDTKTSDEAASSVPVSAAPVLTTPEAVAVA 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098537|ref|XP_002311210.1| predicted protein [Populus trichocarpa] gi|222851030|gb|EEE88577.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 142/264 (53%), Positives = 181/264 (68%), Gaps = 12/264 (4%)

Query: 1   MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYAD 60
           MS F   +S   +E T  FDD     +S    +    + SF +GDD   SQ  +YG+++ 
Sbjct: 1   MSAF--AESFAQSESTRPFDDD----DSYAGYNSQPFDDSFATGDDVLESQPPIYGQFSP 54

Query: 61  ------GGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
                 GGS+G I   PS+   E+G AL EWRR+N I LE+KE++EKE+L+QII+EAE+Y
Sbjct: 55  QENGEFGGSEGRISLSPSETEAEQGLALIEWRRQNVILLEDKERREKEVLSQIIKEAEDY 114

Query: 115 KLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKK 174
           K+EFY+K   T ENNK +NRE+EKLF+ +Q+KFH EA KNYWK+IAELIPNEVPAIEK+K
Sbjct: 115 KVEFYKKRQFTCENNKTTNREKEKLFLVNQEKFHAEADKNYWKSIAELIPNEVPAIEKRK 174

Query: 175 AKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTS 234
            K+DQ+KKP+IVVIQGPKPGKPT LSRMRQI++KLKH+TP HLK SP  AS+ A   KT 
Sbjct: 175 GKKDQDKKPAIVVIQGPKPGKPTELSRMRQILLKLKHDTPPHLKHSPAAASSTANAAKTC 234

Query: 235 DAAAKAGPSQPAAAATPTEVVVAA 258
           DA      ++     T  E V  A
Sbjct: 235 DATGVTTSTKANTVVTAPEPVAVA 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112533|ref|XP_002316222.1| predicted protein [Populus trichocarpa] gi|222865262|gb|EEF02393.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 135/250 (54%), Positives = 171/250 (68%), Gaps = 15/250 (6%)

Query: 14  EYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYA------DGGSDGPI 67
           E T  FD+     +S V       + SF +G+D F SQ  +YGE++       GG +GPI
Sbjct: 12  ESTRMFDED----DSYVGYDSQPFDDSFAAGNDVFESQLPIYGEFSPLENGGSGGPEGPI 67

Query: 68  LPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRE 127
            PPPS+   E+GFALREWRR+NAI LE+KEK+EKE L+QII+EAE+YK+E Y+K  +  E
Sbjct: 68  FPPPSEKDAEQGFALREWRRQNAILLEDKEKREKEALSQIIKEAEDYKVESYKKREIACE 127

Query: 128 NNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVV 187
           NNK +NRE+EKLF+ +++KFH E  KNYWK+IAELIPNEV AIEK+  K+D EKKP+IVV
Sbjct: 128 NNKITNREKEKLFLVNREKFHAEVDKNYWKSIAELIPNEVAAIEKRTGKKDLEKKPAIVV 187

Query: 188 IQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTSDAAAKAGPSQPAA 247
           IQGPK GKPT LSRMRQI++KLKH+ P HLK SP  A A + D   +  + KA       
Sbjct: 188 IQGPKSGKPTELSRMRQILLKLKHSAPPHLKYSPAEA-ATSIDATVATTSLKAN----TV 242

Query: 248 AATPTEVVVA 257
              P  V VA
Sbjct: 243 VTAPETVAVA 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448385|ref|XP_002269465.1| PREDICTED: clathrin light chain 2-like [Vitis vinifera]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 145/197 (73%), Positives = 173/197 (87%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           GSDGPILPPP++M  EEGFALREWRR+NAI LEEKEK+EKE+L+QII+EA+EYK+EFYR+
Sbjct: 123 GSDGPILPPPTEMQSEEGFALREWRRQNAITLEEKEKREKELLSQIIDEADEYKVEFYRR 182

Query: 122 SIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEK 181
             +T E NK +NRE+EKLF+A+Q+KFH EA KNYWKAIAELIPNEVPAIEKK+ K+DQ+K
Sbjct: 183 RTITCETNKTTNREKEKLFIANQEKFHAEADKNYWKAIAELIPNEVPAIEKKRGKKDQDK 242

Query: 182 KPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTSDAAAKAG 241
           KPSIVVIQGPKPGKPT+LSRMRQI++KLKHNTP HLKPSPPPA APA DTKT ++A+ A 
Sbjct: 243 KPSIVVIQGPKPGKPTDLSRMRQILLKLKHNTPPHLKPSPPPAPAPAKDTKTGNSASAAA 302

Query: 242 PSQPAAAATPTEVVVAA 258
           P++ A   +P E V AA
Sbjct: 303 PAKAAVGPSPPEAVAAA 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574399|ref|XP_002528113.1| conserved hypothetical protein [Ricinus communis] gi|223532502|gb|EEF34292.1| conserved hypothetical protein [Ricinus communis]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/283 (50%), Positives = 188/283 (66%), Gaps = 29/283 (10%)

Query: 1   MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNN---NSSFQSG---DDAFASQ--- 51
           MS+F       +  Y H F   +++  S+   S  ++    SS+ +G   DD F+S    
Sbjct: 1   MSSFGDDHGYVIDGYDHRF--PSQRFYSSFSQSAGDSPPMFSSYSTGGGADDVFSSVPVS 58

Query: 52  ------TSVYG------EYADGGSDGPILPPPSDMVPEE--GFALREWRRENAIRLEEKE 97
                  SV G      +   GGS+GP+LP P  M  EE  GFALREWRR+NAIRL+EKE
Sbjct: 59  ESPPSVFSVSGGGFSSEQNGQGGSNGPMLPLPDGMQAEEEEGFALREWRRQNAIRLKEKE 118

Query: 98  KKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWK 157
           KKE +ML++II+EA+++K EFYRK  +T EN KASN E+EKLF+A+++ FH EA KNYWK
Sbjct: 119 KKENQMLHKIIQEADDFKTEFYRKRHLTIENKKASNGEKEKLFLANREMFHAEAEKNYWK 178

Query: 158 AIAELIPNEVPAIEKK--KAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPA 215
           AIAELIP EVPAIEK+  K +  ++KKPSIVVIQGPKPGKPT+LSRMRQ+++KLKHN P 
Sbjct: 179 AIAELIPQEVPAIEKRGKKQQDQEKKKPSIVVIQGPKPGKPTDLSRMRQLLLKLKHNPPL 238

Query: 216 HLKPSPPPASAPATDTKTSDAAAKAGPSQ--PAAAATPTEVVV 256
           H+KP P P++ P    K + +AA    ++  P  +ATP  V+V
Sbjct: 239 HMKPKPSPSAEPKKGGKVAPSAANHASTKTAPTTSATPETVIV 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766743|emb|CAN69697.1| hypothetical protein VITISV_014565 [Vitis vinifera]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 144/197 (73%), Positives = 172/197 (87%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           GSDGPILPPP++M  EEGFALREWRR+NAI LEEKEK+EKE+L+QII+EA+EYK+EFYR+
Sbjct: 123 GSDGPILPPPTEMQSEEGFALREWRRQNAITLEEKEKREKELLSQIIDEADEYKVEFYRR 182

Query: 122 SIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEK 181
             +T E NK +NRE+EKLF+A+Q+KFH EA KNYWKAIAELIPNEVPAIEKK+ K+DQ+K
Sbjct: 183 RTITCETNKTTNREKEKLFIANQEKFHAEADKNYWKAIAELIPNEVPAIEKKRGKKDQDK 242

Query: 182 KPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTKTSDAAAKAG 241
           KPSIVVIQGPKPGKPT+LSRMRQI++KLKHNTP HLKPSPPPA APA D KT ++A+ A 
Sbjct: 243 KPSIVVIQGPKPGKPTDLSRMRQILLKLKHNTPPHLKPSPPPAPAPAKDXKTGNSASAAA 302

Query: 242 PSQPAAAATPTEVVVAA 258
           P++ A   +P E V AA
Sbjct: 303 PAKAAVGPSPPEAVAAA 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460303|ref|XP_004147885.1| PREDICTED: clathrin light chain 3-like [Cucumis sativus]

 Score =  239 bits (611), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 132/224 (58%), Positives = 168/224 (75%), Gaps = 6/224 (2%)

Query: 38  NSSFQSGDDAFASQTSVYGEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRLE 94
           N S   G  +F+SQ +  G+  DGG   SDGPIL  P+ M PEEGF LREWRR NAIRLE
Sbjct: 64  NFSAGGGFSSFSSQQN--GKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLE 121

Query: 95  EKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKN 154
           EKEK+E E+L +II+EA++YK+EFYR+  +  +++KA+NR++EK ++A+Q+KFH EA KN
Sbjct: 122 EKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKN 181

Query: 155 YWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTP 214
           YWKAIAELIPNEVP IE ++ K+D+EKKP+IVVIQGPKPGKPT+LSRMRQI +KLKHNTP
Sbjct: 182 YWKAIAELIPNEVPTIE-QRGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIHLKLKHNTP 240

Query: 215 AHLKPSPPPASAPATDTKTSDAAAKAGPSQPAAAATPTEVVVAA 258
            H+KP PPPA   A   K S AA     +   +AA+ T  V  +
Sbjct: 241 LHMKPKPPPAEPKAESKKDSSAAGATLAAGSGSAASRTAAVATS 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516147|ref|XP_004165109.1| PREDICTED: clathrin light chain 2-like [Cucumis sativus]

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/225 (58%), Positives = 168/225 (74%), Gaps = 6/225 (2%)

Query: 37  NNSSFQSGDDAFASQTSVYGEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRL 93
            N S   G  +F+SQ +  G+  DGG   SDGPIL  P+ M PEEGF LREWRR NAIRL
Sbjct: 63  TNFSAGGGFSSFSSQQN--GKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRL 120

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYK 153
           EEKEK+E E+L +II+EA++YK+EFYR+  +  +++KA+NR++EK ++A+Q+KFH EA K
Sbjct: 121 EEKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADK 180

Query: 154 NYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNT 213
           NYWKAIAELIPNEVP IE ++ K+D+EKKP+IVVIQGPKPGKPT+LSRMRQI +KLKHNT
Sbjct: 181 NYWKAIAELIPNEVPTIE-QRGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIHLKLKHNT 239

Query: 214 PAHLKPSPPPASAPATDTKTSDAAAKAGPSQPAAAATPTEVVVAA 258
           P H+KP PPPA   A   K S AA     +   +AA+ T  V  +
Sbjct: 240 PLHMKPKPPPAEPKAESKKDSSAAGATLAAGSGSAASRTAAVATS 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405251|ref|NP_565921.1| Clathrin light chain protein [Arabidopsis thaliana] gi|75096962|sp|O04209.1|CLC2_ARATH RecName: Full=Clathrin light chain 2 gi|2088662|gb|AAB95291.1| expressed protein [Arabidopsis thaliana] gi|20260192|gb|AAM12994.1| unknown protein [Arabidopsis thaliana] gi|21387051|gb|AAM47929.1| unknown protein [Arabidopsis thaliana] gi|110741048|dbj|BAE98618.1| hypothetical protein [Arabidopsis thaliana] gi|330254676|gb|AEC09770.1| Clathrin light chain protein [Arabidopsis thaliana]

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/266 (53%), Positives = 187/266 (70%), Gaps = 34/266 (12%)

Query: 5   DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
           D+ +SVPV   + SFD  D+    + ++ + D        S DD FA+ +S YG Y++G 
Sbjct: 15  DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63

Query: 62  ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64  GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123

Query: 115 KLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKK 174
           K EF++K  VT ENNKA+NRE+EKL++ +Q+KF+ E+ KNYWKAIAEL+P EVP IEK++
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRR 183

Query: 175 AKRDQE--KKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTK 232
            K++Q+  KKP++ VIQGPKPGKPT+L+RMRQI++KLKHN P+HLK +  P S  A    
Sbjct: 184 GKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEA---- 239

Query: 233 TSDAAAKAGPSQPAAAATPTEVVVAA 258
                  A P +      PTE V AA
Sbjct: 240 -------AAPPKNVPETKPTEAVTAA 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494973|ref|XP_003516355.1| PREDICTED: uncharacterized protein LOC100783050 [Glycine max]

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 138/207 (66%), Positives = 164/207 (79%), Gaps = 13/207 (6%)

Query: 56  GEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE 112
           G+  DGG   SDGPILPPP++MV +EGFALREWR +NAI+LEEKEKKEKEM +QIIEEAE
Sbjct: 55  GKGVDGGFGASDGPILPPPTNMVAKEGFALREWRMQNAIQLEEKEKKEKEMRSQIIEEAE 114

Query: 113 EYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEK 172
           EYK+EFYRK  V  E NKASNREREKLF+AS++KFH EA KNYWK I ELIP+EVPAIEK
Sbjct: 115 EYKIEFYRKREVNAEKNKASNREREKLFLASREKFHAEADKNYWKTIGELIPHEVPAIEK 174

Query: 173 KKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTK 232
           +  K D+ KKPSI VIQGPKPGKPT+LSRMR I++KLKHN P+H+KP PPP     ++TK
Sbjct: 175 RGKK-DKVKKPSIAVIQGPKPGKPTDLSRMRHILLKLKHNLPSHMKPKPPP-----SETK 228

Query: 233 TSDAAAKAGPSQPAAAAT-PTEVVVAA 258
                AK GP   A+ ++ P +VV+ A
Sbjct: 229 KD---AKTGPLDGASTSSNPPKVVLVA 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2061196	258	CLC2 "clathrin light chain 2"	0.790	0.790	0.538	7.2e-52
TAIR|locus:2074378	258	CLC3 "clathrin light chain 3"	0.596	0.596	0.594	5.7e-43
TAIR|locus:2051472	338	AT2G20760 [Arabidopsis thalian	0.767	0.585	0.504	1.1e-41
UNIPROTKB|E2R2G2	211	CLTB "Uncharacterized protein"	0.406	0.497	0.266	0.00067

TAIR|locus:2061196 CLC2 "clathrin light chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 120/223 (53%), Positives = 153/223 (68%)

Query:     5 DSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG--- 61
             D+ +SVPV+    SFD T     SA D S    +S     DD FA+ +S YG Y++G   
Sbjct:    15 DASESVPVSG---SFDATDSF--SAFDGSLQVEDSV----DDVFAAPSSDYGAYSNGDGI 65

Query:    62 -GS----DGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKL 116
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+L         +L QIIEEA++YK 
Sbjct:    66 FGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKE 125

Query:   117 EFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEXXXXX 176
             EF++K  VT ENNKA+NRE+EKL++ +Q+KF+ E+ KNYWKAIAEL+P EVP IE     
Sbjct:   126 EFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRRGK 185

Query:   177 XXXXX--XPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHL 217
                     P++ VIQGPKPGKPT+L+RMRQI++KLKHN P+HL
Sbjct:   186 KEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHL 228

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2074378 CLC3 "clathrin light chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 94/158 (59%), Positives = 109/158 (68%)

Query:    60 DGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFY 119
             D  +D  ILPPPS M  EEGFALREWRR NA+RL         M+ QI+E AE+YK EFY
Sbjct:    79 DDTNDS-ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFY 137

Query:   120 RKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEXXXXXXXX 179
              K  VT ENNK  NRE+EK F+ +Q+KF+ EA KN WKAIAELIP EVP IE        
Sbjct:   138 SKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKKKT 197

Query:   180 XXXPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHL 217
                 +I VIQGPKPGKPT+LSRMRQ++ KLKHN P H+
Sbjct:   198 A---TITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHM 232

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2051472 AT2G20760 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 103/204 (50%), Positives = 123/204 (60%)

Query:    18 SFD-DTAEQLNSAVDLSDDNNN--SSFQSG-DDAFASQTSVYGEYADGGSDGPILPPPSD 73
             SF+ D A         S  N++  S F+S  +DA  +     G+ A   SDGPILP P++
Sbjct:    45 SFNGDPASPNGYGFGASSPNHDFSSPFESSVNDANGNGGGSGGD-AIFASDGPILPDPNE 103

Query:    74 MVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133
             M  EEGF  REWRR N I L         M NQII EAE++K  FY K   T E NK  N
Sbjct:   104 M-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDN 162

Query:   134 REREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEXXXXXXXXXXXPSIVVIQGPKP 193
             RE+EKL+ A+Q+KFH E  K+YWKAIAELIP EVP IE           PS+ VIQGPKP
Sbjct:   163 REKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKP 222

Query:   194 GKPTNLSRMRQIIIKLKHNTPAHL 217
             GKPT+L RMRQI +KLK N P H+
Sbjct:   223 GKPTDLGRMRQIFLKLKTNPPPHM 246

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

UNIPROTKB|E2R2G2 CLTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 96 (38.9 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 29/109 (26%), Positives = 52/109 (47%)

Query:    54 VYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEE 113
             V+ E A+G +DG      +D + +E  ++R+WR E   RL            +  E+A++
Sbjct:    76 VFQE-ANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKK 134

Query:   114 YKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAEL 162
                E+ ++     E NK +NR  E+ FV   +   +E     W+ +A+L
Sbjct:   135 DLEEWNQRQSEQVEKNKINNRASEEAFVKESK---EETPGTEWEKVAQL 180

GO:0060170 "cilium membrane" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04209	CLC2_ARATH	No assigned EC number	0.5338	0.8992	0.8992	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101845 hypothetical protein (252 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	5e-10
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.004

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 29/196 (14%)

Query: 20  DDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEG 79
           DD   +  S+    D  N +    G          Y E  D  S    +     +  EE 
Sbjct: 56  DDEISEFESSFPDVDTANEAVAPGGTIN----GDGYQEPDDPTSGYASISQADRVEGEEP 111

Query: 80  FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKL 139
            ++R+WR    +R+EE+++  ++   ++IE+A++   +FY      +E  KA NR+  + 
Sbjct: 112 ESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQ 171

Query: 140 FVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNL 199
           F+A +  F   +    W+ +A+L               D   K S       K G+    
Sbjct: 172 FLAERDDF--SSPGTEWERVAKLC--------------DFNPKGS-------KQGRDK-- 206

Query: 200 SRMRQIIIKLKHNTPA 215
           SR R+I++ LK +  A
Sbjct: 207 SRFREILLSLKGDEQA 222

Length = 225

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 220 SPPPASAPATDTKTSDAAAKAGPSQPAAAATPTEVVVA 257
            PP   APA + +   A   +    P+AA  P E V  
Sbjct: 78  PPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEP 115

Length = 931

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	100.0
PF01086	225	Clathrin_lg_ch: Clathrin light chain; InterPro: IP	100.0
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	93.85

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-34  Score=253.42  Aligned_cols=157  Identities=23%  Similarity=0.335  Sum_probs=131.6

Q ss_pred             CCCCCcCCCCCCCccccCCcccccccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089           33 SDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE  112 (258)
Q Consensus        33 ~~~~~~~~~~~~~d~~~~~~~~~~~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAe  112 (258)
                      +-++|..+|.+-|.+-+..-..+-+..||..++++.+.+.....+|||.||+||++|++||+|||..+++++++++++|.
T Consensus        59 p~~~~e~~g~~~d~~~~~~~~~~f~~~nG~~d~~a~is~~~~~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAk  138 (216)
T KOG4031|consen   59 PQRHFEESGPGIDALNGAVGGDVFQEDNGPADGYAGISQGPRLRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAK  138 (216)
T ss_pred             cCCCccccCCCcchhhccccccccccCCCCcccccccCCCCCcccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45788888866555433333334445677788888888777788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHhhhhhhhcccCChHHHHHhhcCCCchhHHHhhhhhhccCCCcceeecCCC
Q 025089          113 EYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPK  192 (258)
Q Consensus       113 e~id~FY~~rn~kkEknk~~NRe~Ek~FLa~re~F~~~a~gt~WERVaeLIDle~p~~Ek~~~kkd~~Kk~~i~vi~gpK  192 (258)
                      +.|++||.+|++++++++.+||++++.|+...+.|   .+||.||||++|||+                        +||
T Consensus       139 Kelddwy~~~~ek~~k~~~~nk~eee~~~~e~~~~---~~gTeWErv~kL~D~------------------------n~k  191 (216)
T KOG4031|consen  139 KELDDWYDQQNEKLEKTKANNKAEEEALVKENEEF---SPGTEWERVAKLCDF------------------------NPK  191 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccc---CCCchHHHHHHHHcC------------------------Ccc
Confidence            99999999999999999999988887777665553   467999999999998                        466


Q ss_pred             CCC-CchhhHHHHHHHHhcCCCCCC
Q 025089          193 PGK-PTNLSRMRQIIIKLKHNTPAH  216 (258)
Q Consensus       193 ~gK-~kDlSRMRqILLkLK~~pp~h  216 (258)
                      +.+ ++||||||+|||+|||.|.+|
T Consensus       192 ~sk~gkD~SRlrslL~~LK~aP~a~  216 (216)
T KOG4031|consen  192 SSKQGKDVSRLRSLLISLKQAPGAA  216 (216)
T ss_pred             chhccccHHHHHHHHHHhhhCcCCC
Confidence            667 699999999999999988764

>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=1.8e-35  Score=262.57  Aligned_cols=122  Identities=39%  Similarity=0.604  Sum_probs=56.7

Q ss_pred             CCCCCCCCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Q 025089           65 GPILPPPSD-MVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVAS  143 (258)
Q Consensus        65 ~p~~p~p~~-~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FLa~  143 (258)
                      ++...++.. +..++|++||+||++|+++|++||+++++++++|+++|+++|++||.+|+.+|+++++.||++|++||++
T Consensus        96 ~~~~~~~~~~~~~E~~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~ee~fl~~  175 (225)
T PF01086_consen   96 GPSSISPAPPVEEEEPEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREEEEEFLAK  175 (225)
T ss_dssp             --------STTTTS-TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred             CccccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334443333 3333499999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccCChHHHHHhhcCCCchhHHHhhhhhhccCCCcceeecCCCCCC-CchhhHHHHHHHHhcCC
Q 025089          144 QQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGK-PTNLSRMRQIIIKLKHN  212 (258)
Q Consensus       144 re~F~~~a~gt~WERVaeLIDle~p~~Ek~~~kkd~~Kk~~i~vi~gpK~gK-~kDlSRMRqILLkLK~~  212 (258)
                      |+.|  ..+||+|+||++||||.                        ++..+ ++|+||||+|||+||++
T Consensus       176 ~~~~--~~~~t~WerV~~Lid~~------------------------~~~~~~~kD~sRmR~iLl~LK~~  219 (225)
T PF01086_consen  176 REEF--LQPGTEWERVAKLIDFN------------------------PKSSKSGKDVSRMREILLKLKGD  219 (225)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccc--CCCCCcHHHHHHHhCCC------------------------CCCCCCCCcHHHHHHHHHHhhhh
Confidence            9997  67899999999999992                        22222 69999999999999944

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.85  E-value=0.97  Score=41.41  Aligned_cols=82  Identities=20%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025089           51 QTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEK-KEKEMLNQIIEEAEEYKLEFYRKSIVTRENN  129 (258)
Q Consensus        51 ~~~~~~~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~-~e~E~keqi~kEAee~id~FY~~rn~kkEkn  129 (258)
                      .+++.++..+++... .-++...-..|--..-|+=++++-.++-+.++ .++||+++++|++++|.+.|-+++...+..|
T Consensus        81 ~f~~~nG~~d~~a~i-s~~~~~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~n  159 (216)
T KOG4031|consen   81 VFQEDNGPADGYAGI-SQGPRLRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANN  159 (216)
T ss_pred             ccccCCCCccccccc-CCCCCcccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444433222 22222334456777899999999888888765 5899999999999999999999999999999


Q ss_pred             HHhh
Q 025089          130 KASN  133 (258)
Q Consensus       130 k~~N  133 (258)
                      ++.-
T Consensus       160 k~ee  163 (216)
T KOG4031|consen  160 KAEE  163 (216)
T ss_pred             HHHH
Confidence            6543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-23
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	7e-21
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	7e-07

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 92.5 bits (229), Expect = 3e-23
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 73  DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132
           D + +E  ++R+WR E   RL+E +   K M  +  E+A++   E+ ++     E NK +
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 133 NREREKLFVASQ 144
           NR  +K F    
Sbjct: 138 NRIADKAFYQQP 149

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 86.5 bits (213), Expect = 7e-21
 Identities = 28/125 (22%), Positives = 54/125 (43%)

Query: 20  DDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEG 79
           +D      +           +  + +D  A+      + A+G +DG      +D + +E 
Sbjct: 40  NDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99

Query: 80  FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKL 139
            ++R+WR E   RL+E +   K M  +  E+A++   E+ ++     E NK +NR  +K 
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159

Query: 140 FVASQ 144
           F    
Sbjct: 160 FYQQP 164

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J Length = 70

 Score = 44.7 bits (105), Expect = 7e-07
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 73  DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132
           D +  E  ++R+WR E   RLE  +   ++   +  E+A +   E+Y +     +  KA+
Sbjct: 2   DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKAN 61

Query: 133 NREREKLF 140
           NR  ++ F
Sbjct: 62  NRVADEAF 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	99.86
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	99.83
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	99.8
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	80.35

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}

Probab=99.86  E-value=4.9e-24  Score=183.99  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=97.4

Q ss_pred             ccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 025089           57 EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRER  136 (258)
Q Consensus        57 ~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~  136 (258)
                      +.++|++|+++++++.++..+|||.||+|||+|++||++||+.+++++++++++|++.|++||++||+++++++++||+.
T Consensus        62 qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~a  141 (190)
T 3lvg_D           62 XXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA  141 (190)
T ss_dssp             CCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             cccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhcccCChHHHHHhhcC
Q 025089          137 EKLFVASQQKFHDEAYKNYWKAIAELIP  164 (258)
Q Consensus       137 Ek~FLa~re~F~~~a~gt~WERVaeLID  164 (258)
                      |++||++|+.   +..|.+|.--.....
T Consensus       142 EEeFLaqRdd---ttiGyV~~~~~~~~~  166 (190)
T 3lvg_D          142 DKAFYQQPDA---DIIXXXXXXXXXXXX  166 (190)
T ss_dssp             TTTSSHHHHH---HHCCTTTHHHHHHHC
T ss_pred             HHHHHhCCcc---chhhhhccccccccc
Confidence            9999999997   778999986544443

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}

Probab=99.83  E-value=8.8e-22  Score=172.76  Aligned_cols=90  Identities=28%  Similarity=0.368  Sum_probs=74.8

Q ss_pred             ccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 025089           57 EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRER  136 (258)
Q Consensus        57 ~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~  136 (258)
                      +.|+|++|+++.+++.+...+|||+||+|||+|++||++||+.+++++++++++|++.|++||.+|+.+++|+|++||..
T Consensus        77 qesngp~d~yaai~qad~leeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~a  156 (205)
T 3lvh_D           77 QEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA  156 (205)
T ss_dssp             --------------CCSTTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             hhcCCCccchhhhccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 025089          137 EKLFVASQQK  146 (258)
Q Consensus       137 Ek~FLa~re~  146 (258)
                      +++||++|+.
T Consensus       157 eeeFlaqrd~  166 (205)
T 3lvh_D          157 DKAFYQQPDA  166 (205)
T ss_dssp             TTTSSHHHHH
T ss_pred             HHHHHhCccc
Confidence            9999999986

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=99.80  E-value=1.5e-19  Score=135.97  Aligned_cols=66  Identities=26%  Similarity=0.359  Sum_probs=64.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 025089           76 PEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFV  141 (258)
Q Consensus        76 ~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FL  141 (258)
                      .+||++||+||++|+++|++||+.+++++++++++|+++||+||.+||.++++++++||..+++||
T Consensus         5 ~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl   70 (70)
T 1xi4_J            5 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY   70 (70)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            479999999999999999999999999999999999999999999999999999999999999986

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=80.35  E-value=15  Score=27.20  Aligned_cols=64  Identities=22%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             CCCCCCccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 025089           70 PPSDMVPEEGFALREWRRENAIRLEEKEK-KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN  133 (258)
Q Consensus        70 ~p~~~~~eEpE~IReWREe~a~rIeEKD~-~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~N  133 (258)
                      +|..+.++--..-|+=+..+-.+..+..+ +..++++++++++++|.+.|-.+-...+..|...-
T Consensus         2 ~~~~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~   66 (70)
T 1xi4_J            2 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVAD   66 (70)
T ss_pred             CCcccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667788888888888877765 58999999999999999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00