Citrus Sinensis ID: 025144
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ED65 | 261 | 2-phytyl-1,4-beta-naphtho | yes | no | 0.949 | 0.934 | 0.694 | 1e-100 | |
| P72818 | 238 | Demethylmenaquinone methy | N/A | no | 0.871 | 0.941 | 0.517 | 2e-65 | |
| Q8YLP4 | 229 | Demethylmenaquinone methy | yes | no | 0.887 | 0.995 | 0.491 | 3e-64 | |
| Q3MD91 | 229 | Demethylmenaquinone methy | yes | no | 0.879 | 0.986 | 0.491 | 5e-64 | |
| B2IUM7 | 230 | Demethylmenaquinone methy | yes | no | 0.879 | 0.982 | 0.508 | 3e-63 | |
| Q5N4X9 | 233 | Demethylmenaquinone methy | yes | no | 0.852 | 0.939 | 0.542 | 2e-62 | |
| Q31P90 | 233 | Demethylmenaquinone methy | yes | no | 0.852 | 0.939 | 0.542 | 2e-62 | |
| Q8DGE4 | 225 | Demethylmenaquinone methy | yes | no | 0.859 | 0.982 | 0.504 | 2e-60 | |
| A0Q549 | 250 | Ubiquinone/menaquinone bi | yes | no | 0.840 | 0.864 | 0.401 | 1e-41 | |
| B2SFA2 | 250 | Ubiquinone/menaquinone bi | yes | no | 0.840 | 0.864 | 0.401 | 2e-41 |
| >sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/249 (69%), Positives = 208/249 (83%), Gaps = 5/249 (2%)
Query: 9 PFSSTSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAK 68
P +S SR + V+CS+ER+ LF+RIAPVYDNLNDLLS GQHRIWK MAVSWSGAK
Sbjct: 18 PVNSRSRRR-----TVVKCSNERRILFNRIAPVYDNLNDLLSLGQHRIWKNMAVSWSGAK 72
Query: 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128
GD VLD+CCGSGDL+FLLSE+VGS GKV+GLDFS QL++A++RQ L +++CYK IEW+
Sbjct: 73 KGDYVLDLCCGSGDLAFLLSEKVGSTGKVMGLDFSSEQLAVAATRQSLKARSCYKCIEWI 132
Query: 129 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188
EGDA+DLPF DC FDA+TMGYGLRNVVD+ +A++E +RVLKPGSR+S+LDFNKS Q TT
Sbjct: 133 EGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTT 192
Query: 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 248
+Q WMIDNVVVPVA+ Y LA+EY+YLK SI +LTG++LE LALE GFS A HYE+SGG
Sbjct: 193 FMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 252
Query: 249 LMGNLVATR 257
MGNLVA R
Sbjct: 253 FMGNLVAMR 261
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Involved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl-1,4-beta-naphthoquinone to phylloquinone. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 2 |
| >sp|P72818|UBIE_SYNY3 Demethylmenaquinone methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 157/226 (69%), Gaps = 2/226 (0%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
Q++F+RIAP YD+LN LSFGQH IWK MAV WSG GD +LDVCCGSGDL+F ++ V
Sbjct: 15 QQIFARIAPQYDDLNTFLSFGQHHIWKAMAVKWSGVSPGDRLLDVCCGSGDLAFQGAKVV 74
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G++GKV+GLDF L++A+ + SK + ++W++GDAL LPFSD FD TMGYGL
Sbjct: 75 GTRGKVVGLDFCAELLAIAAGKHK--SKYAHLPMQWLQGDALALPFSDNEFDGATMGYGL 132
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
RNV + +AL E RVLKPG ++++LDF++ Q W + NVVVP+A + L EE
Sbjct: 133 RNVGNIPQALTELQRVLKPGKKVAILDFHQPGNALAANFQRWYLANVVVPMAKQWRLTEE 192
Query: 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y YL+ S+ F TG + ALE+GF++A HY ++ GLMG LVA +
Sbjct: 193 YAYLQPSLDRFPTGPKQVQFALEVGFAKAVHYPIAAGLMGVLVAEK 238
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q8YLP4|UBIE_NOSS1 Demethylmenaquinone methyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 157/230 (68%), Gaps = 2/230 (0%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLL 87
+++ + +F RIAPVYD LND LS GQHRIWK MA+ W+GAK GD LD+CCGSGDL+ L
Sbjct: 2 TNKIRAIFDRIAPVYDQLNDWLSLGQHRIWKEMAIKWTGAKPGDTCLDLCCGSGDLALRL 61
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147
+ +VGS G+V G+DFS N L A R S+ NI WVE + LDLPF D FDA TM
Sbjct: 62 ARRVGSTGQVSGVDFSANLLETAKQRAQ--SQYPQPNISWVEANVLDLPFKDNQFDAATM 119
Query: 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207
GYGLRNV D ++L+E RVLKP ++ ++LDF++ Q+W +D++VVP+A G
Sbjct: 120 GYGLRNVTDIPRSLQELHRVLKPNAKAAILDFHRPNNQQFRTFQQWYLDSIVVPLADRLG 179
Query: 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
+ EEY Y+ S+ F GK+ ++AL++GF+ A HY ++ G+MG L+ ++
Sbjct: 180 VKEEYAYISPSLDRFPIGKEQVEIALKVGFTSATHYPIANGMMGVLIISK 229
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q3MD91|UBIE_ANAVT Demethylmenaquinone methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 159/232 (68%), Gaps = 6/232 (2%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLL 87
++E + +F RIAPVYD LND LS GQHRIWK MA+ W+GAK GD LD+CCGSGDL+ L
Sbjct: 2 TNEIRAIFDRIAPVYDQLNDWLSLGQHRIWKEMAIKWTGAKPGDTCLDLCCGSGDLALRL 61
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK--NIEWVEGDALDLPFSDCFFDAI 145
+ +VGS G+V G+DFS N L A R ++A Y +I WVE + LDLPF D FDA
Sbjct: 62 ARRVGSTGQVYGVDFSANLLETAKQR----AQAQYPQPHISWVEANVLDLPFEDNQFDAA 117
Query: 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205
TMGYGLRNV D ++L+E RVLKP ++ ++LDF++ Q+W +D++VVP+A
Sbjct: 118 TMGYGLRNVTDIPRSLQELRRVLKPNAKAAILDFHRPNNQQFRTFQQWYLDSIVVPLADR 177
Query: 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
G+ EEY Y+ S+ F GK+ ++AL++GF+ A HY ++ G+MG L+ ++
Sbjct: 178 LGVKEEYAYISPSLDRFPIGKEQVEIALQVGFTSATHYPIANGMMGVLIISK 229
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B2IUM7|UBIE_NOSP7 Demethylmenaquinone methyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/232 (50%), Positives = 159/232 (68%), Gaps = 6/232 (2%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLL 87
++E Q +F+RIAPVYD LND LS GQHRIWK MAV WS AK+G+ LD+CCGSGDL+ L
Sbjct: 2 TNEVQSIFNRIAPVYDQLNDWLSLGQHRIWKEMAVKWSAAKSGNTALDLCCGSGDLALRL 61
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN--IEWVEGDALDLPFSDCFFDAI 145
+ +VG+ G V G+DFS N L A R S+ Y I WVE D L+LPF D FDA
Sbjct: 62 ARRVGATGYVYGVDFSCNLLETAKER----SQKQYPQPAIAWVEADVLNLPFDDNQFDAA 117
Query: 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205
TMGYGLRNV D ++L+E RVLKPG++ ++LDF++ + P A Q+ +++ VVPVA+
Sbjct: 118 TMGYGLRNVKDIPRSLQELHRVLKPGAKAAILDFHRPSNPQLRAFQQLYLNSFVVPVANY 177
Query: 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
GL EEY Y+ S+ F GK+ +LA ++GF+ A HY ++ G+MG LV ++
Sbjct: 178 LGLKEEYAYISPSLDRFPIGKEQIELARQVGFAVATHYPIANGMMGVLVVSK 229
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q5N4X9|UBIE_SYNP6 Demethylmenaquinone methyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 151/221 (68%), Gaps = 2/221 (0%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
LF +IAP+YDNLND LSFG HR+WKRMAV WS AK GD VLD+CCGSGDL+FLL++ VGS
Sbjct: 12 LFDQIAPIYDNLNDQLSFGLHRLWKRMAVKWSAAKPGDRVLDLCCGSGDLAFLLAKVVGS 71
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
+G+VIG D S+ LS+A R ++ A I+W GDALDLPF D FDA T+GYGLRN
Sbjct: 72 KGQVIGFDRSQALLSVAGDRARQLASALV--IDWQRGDALDLPFPDDHFDAATLGYGLRN 129
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213
V D L + RVLKPG+R ++LD ++ P Q+ +D VVP A+ A EY+
Sbjct: 130 VPDIPTVLRQLQRVLKPGARAAILDMHRPYSPLLRQFQQVYLDRWVVPAAAAQNCAAEYE 189
Query: 214 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 254
Y+ +S+ F G+ LA+ GF RAKHYEL+ GLMG LV
Sbjct: 190 YIDASLEAFPQGQQQVALAIAAGFQRAKHYELAAGLMGVLV 230
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q31P90|UBIE_SYNE7 Demethylmenaquinone methyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 151/221 (68%), Gaps = 2/221 (0%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
LF +IAP+YDNLND LSFG HR+WKRMAV WS AK GD VLD+CCGSGDL+FLL++ VGS
Sbjct: 12 LFDQIAPIYDNLNDQLSFGLHRLWKRMAVKWSAAKPGDRVLDLCCGSGDLAFLLAKVVGS 71
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
+G+VIG D S+ LS+A R ++ A I+W GDALDLPF D FDA T+GYGLRN
Sbjct: 72 KGQVIGFDRSQALLSVAGDRARQLASALV--IDWQRGDALDLPFPDDHFDAATLGYGLRN 129
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213
V D L + RVLKPG+R ++LD ++ P Q+ +D VVP A+ A EY+
Sbjct: 130 VPDIPTVLRQLQRVLKPGARAAILDMHRPYSPLLRQFQQVYLDRWVVPAAAAQNCAAEYE 189
Query: 214 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 254
Y+ +S+ F G+ LA+ GF RAKHYEL+ GLMG LV
Sbjct: 190 YIDASLEAFPQGQQQVALAIAAGFQRAKHYELAAGLMGVLV 230
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q8DGE4|UBIE_THEEB Demethylmenaquinone methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 142/226 (62%), Gaps = 5/226 (2%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
Q LF RIAP+YD LND LSFG H +WK+MAV W G LD+CCG+GDL+ LL+ +V
Sbjct: 5 QALFERIAPLYDRLNDQLSFGLHHVWKQMAVDWLELPQGATALDLCCGTGDLTRLLARRV 64
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G QG+V+GLDF+ L++A R D Y IEW++GDAL +PF+ F IT+GYGL
Sbjct: 65 GRQGRVVGLDFAAAPLAIARQRSD-----HYPQIEWLQGDALAVPFAPQTFQGITIGYGL 119
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
RNVVD +AL E FR+L PG R ++LDF+ Q+W + VVP A YGLA E
Sbjct: 120 RNVVDIPQALREMFRLLVPGGRAAILDFSHPQTSALEQFQQWYLQQWVVPTARHYGLAAE 179
Query: 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y YL SI+ F T L L + GF R KHY L GGLM VA +
Sbjct: 180 YDYLWPSIQAFPTPPTLCALIQQAGFERVKHYPLLGGLMAITVAQK 225
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|A0Q549|UBIE_FRATN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. novicida (strain U112) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+F +A YD +NDL+SFG HRIWK+ ++ SG + GDNVLD+ G+GDL++ + VG
Sbjct: 27 VFHSVAAKYDLMNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMVGQ 86
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
QGKVI D + + L + ++ L +K C NIE+V+ +A LPF D +FD IT+ +GLRN
Sbjct: 87 QGKVILSDINSSMLEVG--KEKLTNKGCVGNIEYVQANAECLPFPDNYFDCITISFGLRN 144
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI-QEWMIDNVVVPVASGYGLAEEY 212
V DK KAL RVLKPG R+ VL+F+K P + + E+ + AE Y
Sbjct: 145 VTDKEKALASMCRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESY 204
Query: 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 251
+YL SIR+ + L+++ + GF ++ ++GG++
Sbjct: 205 KYLAESIRKHPDQQTLKQMMYDAGFDNVEYQNMTGGIVA 243
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Francisella tularensis subsp. novicida (strain U112) (taxid: 401614) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|B2SFA2|UBIE_FRATM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+F +A YD +NDL+SFG HRIWK+ ++ SG + GDNVLD+ G+GDL++ + VG
Sbjct: 27 VFHSVAAKYDLMNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMVGQ 86
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
QGKVI D + + L + ++ L +K C NIE+V+ +A LPF D +FD IT+ +GLRN
Sbjct: 87 QGKVILSDINSSMLEVG--KEKLTNKGCVGNIEYVQANAECLPFPDNYFDCITISFGLRN 144
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI-QEWMIDNVVVPVASGYGLAEEY 212
V DK KAL RVLKPG R+ VL+F+K P + + E+ + AE Y
Sbjct: 145 VTDKDKALASMCRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESY 204
Query: 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 251
+YL SIR+ + L+++ + GF ++ ++GG++
Sbjct: 205 KYLAESIRKHPDQQTLKQMMYDAGFDNVEYQNMTGGIVA 243
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Francisella tularensis subsp. mediasiatica (strain FSC147) (taxid: 441952) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| 359473246 | 258 | PREDICTED: 2-phytyl-1,4-naphtoquinone me | 1.0 | 0.996 | 0.763 | 1e-112 | |
| 359473244 | 259 | PREDICTED: LOW QUALITY PROTEIN: 2-phytyl | 1.0 | 0.992 | 0.760 | 1e-110 | |
| 224102453 | 230 | predicted protein [Populus trichocarpa] | 0.894 | 1.0 | 0.808 | 1e-108 | |
| 356501994 | 252 | PREDICTED: 2-phytyl-1,4-naphtoquinone me | 0.980 | 1.0 | 0.746 | 1e-107 | |
| 356497551 | 253 | PREDICTED: 2-phytyl-1,4-naphtoquinone me | 0.957 | 0.972 | 0.752 | 1e-105 | |
| 255638241 | 253 | unknown [Glycine max] | 0.957 | 0.972 | 0.747 | 1e-104 | |
| 297850802 | 262 | UbiE/COQ5 methyltransferase family prote | 0.941 | 0.923 | 0.726 | 1e-102 | |
| 89953328 | 265 | Fgenesh protein 2 [Beta vulgaris] | 0.968 | 0.939 | 0.706 | 1e-102 | |
| 449450442 | 251 | PREDICTED: 2-phytyl-1,4-beta-naphthoquin | 0.906 | 0.928 | 0.751 | 1e-100 | |
| 357485787 | 270 | Menaquinone biosynthesis methyltransfera | 0.891 | 0.848 | 0.761 | 2e-99 |
| >gi|359473246|ref|XP_002269864.2| PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Vitis vinifera] gi|297739088|emb|CBI28577.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/258 (76%), Positives = 224/258 (86%), Gaps = 1/258 (0%)
Query: 1 MASLQLCLPFSSTSRSQFRFSYGR-VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKR 59
MASL L SS S R V+C++ERQ LFSRIAPVYDNLND LS GQHRIWKR
Sbjct: 1 MASLHFLLRPSSNPNLLALPSRSRPVQCANERQALFSRIAPVYDNLNDFLSLGQHRIWKR 60
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
MAVSWSGAK GD+VLD+CCGSGDL+FLLSE+VGS GKVIG DFS+ QLS+ASSRQ L+SK
Sbjct: 61 MAVSWSGAKRGDDVLDLCCGSGDLAFLLSERVGSDGKVIGFDFSREQLSVASSRQHLLSK 120
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
ACYKNIEW+EGDA LPFSDC FDAITMGYGLRNV+D+ KA++E FRVLKPGSR+S+LDF
Sbjct: 121 ACYKNIEWIEGDATKLPFSDCSFDAITMGYGLRNVLDRGKAMQEMFRVLKPGSRVSILDF 180
Query: 180 NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSR 239
NKST+PF T+IQEWMIDNVVVPVA+GYGLA+EY YLKSS++EFLTGK+LEKLALE+GFS
Sbjct: 181 NKSTKPFITSIQEWMIDNVVVPVATGYGLADEYAYLKSSVQEFLTGKELEKLALEMGFSN 240
Query: 240 AKHYELSGGLMGNLVATR 257
AKHYE+ GG+MGNLVA R
Sbjct: 241 AKHYEIGGGIMGNLVAKR 258
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473244|ref|XP_003631276.1| PREDICTED: LOW QUALITY PROTEIN: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/259 (76%), Positives = 223/259 (86%), Gaps = 2/259 (0%)
Query: 1 MASLQLCLPFSSTSRSQFRFSYGR-VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKR 59
MASLQ L SS S R VRC+ ERQ LF+RIAPVYDNLND LS GQHRIWKR
Sbjct: 1 MASLQFLLRPSSNPNLLALPSRCRSVRCADERQALFNRIAPVYDNLNDFLSLGQHRIWKR 60
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
MAVSWSGAK GDNVLD+CCGSGDL+FLLSE+VGS GKVIG DFS+ QLS+AS RQ L+SK
Sbjct: 61 MAVSWSGAKRGDNVLDLCCGSGDLAFLLSERVGSDGKVIGFDFSRKQLSVASLRQHLLSK 120
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
ACYKNIEW+EGDA++LPFSDC FDAITMGYGLRNV D+ KA++E FRVLKPGSR+S+LDF
Sbjct: 121 ACYKNIEWIEGDAIELPFSDCSFDAITMGYGLRNVFDRCKAMQEMFRVLKPGSRVSILDF 180
Query: 180 NKSTQPFTTA-IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFS 238
NKST+PF T+ I+EWMI+NVVVPVA+GYGLAEEY YLKS ++EFLTGK+LEKLALE GFS
Sbjct: 181 NKSTKPFITSIIKEWMIENVVVPVATGYGLAEEYAYLKSPVQEFLTGKELEKLALETGFS 240
Query: 239 RAKHYELSGGLMGNLVATR 257
AKHYE+ GG+MGNLVATR
Sbjct: 241 HAKHYEIGGGIMGNLVATR 259
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102453|ref|XP_002312683.1| predicted protein [Populus trichocarpa] gi|222852503|gb|EEE90050.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/230 (80%), Positives = 208/230 (90%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLL 87
+++RQ LF+RIAPVYDNLNDLLS GQHRIWKRMAVSW+GAK GD VLD+CCGSGDL+FLL
Sbjct: 1 ANDRQLLFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKLGDCVLDLCCGSGDLAFLL 60
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147
SE+VGS GKV GLDFSK QL MASSRQ L+SKACYKNIEW+EGDA +LPF DC+FDAITM
Sbjct: 61 SEKVGSNGKVSGLDFSKEQLLMASSRQHLLSKACYKNIEWIEGDATELPFPDCYFDAITM 120
Query: 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207
GYGLRNVVDKRKA++E FRVLKPGS+ SVLDFNKSTQPF + QEWMIDN VVPVA+ YG
Sbjct: 121 GYGLRNVVDKRKAVQEMFRVLKPGSKASVLDFNKSTQPFVASFQEWMIDNAVVPVATAYG 180
Query: 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
LA+EY+YLK SIREFLTG +LE+LALE GFS AKHYE+SGGLMGNLVATR
Sbjct: 181 LAKEYEYLKGSIREFLTGNELEELALEAGFSTAKHYEISGGLMGNLVATR 230
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501994|ref|XP_003519807.1| PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/252 (74%), Positives = 217/252 (86%)
Query: 6 LCLPFSSTSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWS 65
+ + F ++ S FR + R S+ER+ LFSRIAPVYDNLNDLLS GQHRIWKRMAVSW+
Sbjct: 1 MAMTFVPSTSSSFRPTLIRCANSNERRALFSRIAPVYDNLNDLLSLGQHRIWKRMAVSWT 60
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125
GAK GD VLDVCCGSGDLSFLLS+QVGS GKVIGLDFSK+QL ASSRQ+ +SK C+ NI
Sbjct: 61 GAKMGDRVLDVCCGSGDLSFLLSDQVGSHGKVIGLDFSKDQLLFASSRQESLSKNCFTNI 120
Query: 126 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
EWVEGDALDLPFSD +FDAITMGYGLRNVVDK+KA++E FRVLK GS +S+LDFNKS +
Sbjct: 121 EWVEGDALDLPFSDGWFDAITMGYGLRNVVDKQKAMQEIFRVLKTGSTVSILDFNKSNEL 180
Query: 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245
T+A EWMIDN+VVPVA+GYGL+EEY+YLKSSIREFLTGK+LEKLALE+GFS A+HYE+
Sbjct: 181 LTSAFTEWMIDNIVVPVATGYGLSEEYRYLKSSIREFLTGKELEKLALEVGFSAARHYEI 240
Query: 246 SGGLMGNLVATR 257
GGLMG LVA R
Sbjct: 241 GGGLMGCLVAKR 252
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497551|ref|XP_003517623.1| PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/246 (75%), Positives = 213/246 (86%)
Query: 12 STSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGD 71
S++ S FR + R ++ERQ LFSRIAPVYDNLNDLLS GQHRIWKRMAVSW+GAK GD
Sbjct: 8 SSTSSTFRPTLIRCASANERQALFSRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKMGD 67
Query: 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131
VLDVCCGSGDLSFLLS++VGS GKVIGLDFSK+QLS A SRQ +SK C+ NIEWVEGD
Sbjct: 68 CVLDVCCGSGDLSFLLSDKVGSHGKVIGLDFSKDQLSFALSRQQSLSKNCFMNIEWVEGD 127
Query: 132 ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 191
ALDLPFSD +FDAITMGYGLRNVVDK+KA++E FRVLK GS +S+LDFNKS + T+A+
Sbjct: 128 ALDLPFSDGWFDAITMGYGLRNVVDKQKAMQEIFRVLKTGSTVSILDFNKSNELLTSAVT 187
Query: 192 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 251
EWMIDN+VVPVA+GYGL+EEY+YLK SIREFLTGK+LEKLAL +GFS A+HYE+ GGLMG
Sbjct: 188 EWMIDNIVVPVATGYGLSEEYRYLKRSIREFLTGKELEKLALGVGFSAARHYEIGGGLMG 247
Query: 252 NLVATR 257
LVA R
Sbjct: 248 CLVAKR 253
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255638241|gb|ACU19434.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/246 (74%), Positives = 211/246 (85%)
Query: 12 STSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGD 71
S++ S FR + R ++ERQ L SRIAPVYDNLNDLLS GQHRIWKRMAVSW+GAK GD
Sbjct: 8 SSTSSTFRPTLIRCASANERQALLSRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKMGD 67
Query: 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131
VLDVCCGSGDLSFLLS++VGS GKVIGLDFSK+QLS A SRQ +SK C+ NIEWVEGD
Sbjct: 68 CVLDVCCGSGDLSFLLSDKVGSHGKVIGLDFSKDQLSFALSRQQSLSKNCFMNIEWVEGD 127
Query: 132 ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 191
ALDLPFSD FDAITMGYGLRNVVDK+KA++E FRVLK GS +S+LDFNKS + T+A+
Sbjct: 128 ALDLPFSDGRFDAITMGYGLRNVVDKQKAMQEIFRVLKTGSTVSILDFNKSNELLTSAVT 187
Query: 192 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 251
EWMIDN+VVPVA+GYGL+EEY+YLK SIREFLTGK+LEKLAL +GFS A+HYE+ GGLMG
Sbjct: 188 EWMIDNIVVPVATGYGLSEEYRYLKRSIREFLTGKELEKLALGVGFSAARHYEIGGGLMG 247
Query: 252 NLVATR 257
LVA R
Sbjct: 248 CLVAKR 253
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850802|ref|XP_002893282.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297339124|gb|EFH69541.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/245 (72%), Positives = 212/245 (86%), Gaps = 3/245 (1%)
Query: 13 TSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDN 72
SRS+ R V+CS+ER+ LF+RIAPVYDNLNDLLSFGQHRIWK M VSWSGAKTGDN
Sbjct: 21 NSRSRRRMV---VKCSNERRILFNRIAPVYDNLNDLLSFGQHRIWKNMTVSWSGAKTGDN 77
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
VLD+CCGSGDL+FLLSE+VGS GKV+GLDFS QL++A+SRQ+L +++CYK IEW+EGDA
Sbjct: 78 VLDLCCGSGDLAFLLSEKVGSTGKVLGLDFSSEQLAVAASRQNLKARSCYKCIEWIEGDA 137
Query: 133 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE 192
+DLPF DC FDAITMGYGLRNVVD+ +A++E +RVLKPGSR+S+LDFNKS Q TT +Q+
Sbjct: 138 IDLPFDDCEFDAITMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQD 197
Query: 193 WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252
WMIDNVVVPVA+ YGLA+EY+YLK SI +LTG++LE LALE GFS A HYE+SGG MGN
Sbjct: 198 WMIDNVVVPVATVYGLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGN 257
Query: 253 LVATR 257
LVA R
Sbjct: 258 LVAER 262
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89953328|gb|ABD83274.1| Fgenesh protein 2 [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/249 (70%), Positives = 211/249 (84%)
Query: 9 PFSSTSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAK 68
P S S FR VRCS+ERQ LF+RIAPVYDNLND+LS GQHRIWKRMAVSW+GAK
Sbjct: 17 PRISPEYSIFRHRNFTVRCSAERQALFNRIAPVYDNLNDVLSLGQHRIWKRMAVSWTGAK 76
Query: 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128
GD+ LD+CCGSGDL+FLLSE+VG G+V+GLDFS +QL +ASSRQ S CYKNIEW+
Sbjct: 77 RGDSTLDICCGSGDLAFLLSEKVGLDGQVMGLDFSSDQLLVASSRQQESSTPCYKNIEWL 136
Query: 129 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188
EGDAL+LPF D +FDAITMGYGLRNV+DK +A+++ FRVLKPG + S+LDFNKS +P T+
Sbjct: 137 EGDALNLPFRDDYFDAITMGYGLRNVMDKERAMQQIFRVLKPGCKASILDFNKSREPITS 196
Query: 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 248
IQEWMID++VVPVA+G+GLAEEY+YLKSSI+EFLTGK+LE+LA +GFS AK YE++GG
Sbjct: 197 LIQEWMIDSIVVPVATGFGLAEEYKYLKSSIQEFLTGKELEQLAFAVGFSDAKFYEIAGG 256
Query: 249 LMGNLVATR 257
LMGNLV TR
Sbjct: 257 LMGNLVVTR 265
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450442|ref|XP_004142971.1| PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic-like [Cucumis sativus] gi|449500314|ref|XP_004161063.1| PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/233 (75%), Positives = 202/233 (86%)
Query: 25 VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLS 84
++C+S+RQ LF+RIAPVYD LND LS GQHRIWKRMAVSW+ AK GD VLD+CCGSGDL+
Sbjct: 19 IQCASDRQALFNRIAPVYDTLNDFLSLGQHRIWKRMAVSWTCAKPGDCVLDICCGSGDLA 78
Query: 85 FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144
FLLS++VGS GKV GLDFS QLS+ASSRQ +SK CY+NIEWVEGDAL+LPF DC FDA
Sbjct: 79 FLLSQKVGSTGKVTGLDFSWEQLSIASSRQRSLSKPCYENIEWVEGDALNLPFPDCSFDA 138
Query: 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204
ITMGYGLRNVVDKRKAL E RVLK GS+ S+LDFNK+TQP AIQEWMI+N+VVPVAS
Sbjct: 139 ITMGYGLRNVVDKRKALGEILRVLKEGSKASILDFNKTTQPTIAAIQEWMINNIVVPVAS 198
Query: 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
YGLA++Y+YL SI EF TGK+LE+LALE+GFS + HYELSGGLMGNLVA+R
Sbjct: 199 SYGLADDYRYLSKSISEFSTGKELEELALEVGFSTSIHYELSGGLMGNLVASR 251
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485787|ref|XP_003613181.1| Menaquinone biosynthesis methyltransferase ubiE [Medicago truncatula] gi|355514516|gb|AES96139.1| Menaquinone biosynthesis methyltransferase ubiE [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/231 (76%), Positives = 200/231 (86%), Gaps = 2/231 (0%)
Query: 25 VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLS 84
+RCS++RQ LF+RIAPVYDNLNDLLS GQHRIWKRMAVSW+ AK GD VLDVCCGSGDLS
Sbjct: 40 IRCSNDRQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTEAKKGDRVLDVCCGSGDLS 99
Query: 85 FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144
FLLS +V S GKVIGLDFSK QL +ASSR S C+ NIEWVEGDALDLPFSD +FDA
Sbjct: 100 FLLSNKVASNGKVIGLDFSKEQLMVASSRS--FSTNCFNNIEWVEGDALDLPFSDAWFDA 157
Query: 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204
ITMGYGLRNVVDKRKA++E RVLKPGS S+LDFNKS + T++ EWMIDN+VVPVAS
Sbjct: 158 ITMGYGLRNVVDKRKAMQEILRVLKPGSTASILDFNKSNELLTSSFTEWMIDNIVVPVAS 217
Query: 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 255
YGL+++Y+YLKSSIREFLTGK+LEKLALE+GFS A+HYE+ GGLMG LVA
Sbjct: 218 VYGLSDDYKYLKSSIREFLTGKELEKLALEVGFSTARHYEIGGGLMGCLVA 268
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| TAIR|locus:2028050 | 261 | MENG [Arabidopsis thaliana (ta | 0.906 | 0.892 | 0.725 | 4.5e-91 | |
| UNIPROTKB|P0A887 | 251 | ubiE "bifunctional 2-octapreny | 0.832 | 0.852 | 0.392 | 7.2e-36 | |
| TIGR_CMR|CPS_0294 | 271 | CPS_0294 "ubiquinone/menaquino | 0.836 | 0.793 | 0.380 | 3.1e-35 | |
| UNIPROTKB|Q3AB55 | 244 | menG "Demethylmenaquinone meth | 0.859 | 0.905 | 0.384 | 8.3e-35 | |
| TIGR_CMR|CHY_1809 | 244 | CHY_1809 "2-heptaprenyl-1,4-na | 0.859 | 0.905 | 0.384 | 8.3e-35 | |
| UNIPROTKB|Q9KVQ6 | 260 | ubiE "Ubiquinone/menaquinone b | 0.832 | 0.823 | 0.375 | 2.8e-34 | |
| TIGR_CMR|VC_0083 | 260 | VC_0083 "ubiquinone/menaquinon | 0.832 | 0.823 | 0.375 | 2.8e-34 | |
| TIGR_CMR|SO_4199 | 251 | SO_4199 "ubiquinone/menaquinon | 0.828 | 0.848 | 0.354 | 2.6e-31 | |
| TIGR_CMR|CBU_2017 | 250 | CBU_2017 "ubiquinone/menaquino | 0.844 | 0.868 | 0.340 | 4.2e-31 | |
| ZFIN|ZDB-GENE-040912-5 | 327 | zgc:92445 "zgc:92445" [Danio r | 0.626 | 0.492 | 0.335 | 7.7e-31 |
| TAIR|locus:2028050 MENG [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 169/233 (72%), Positives = 202/233 (86%)
Query: 25 VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLS 84
V+CS+ER+ LF+RIAPVYDNLNDLLS GQHRIWK MAVSWSGAK GD VLD+CCGSGDL+
Sbjct: 29 VKCSNERRILFNRIAPVYDNLNDLLSLGQHRIWKNMAVSWSGAKKGDYVLDLCCGSGDLA 88
Query: 85 FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144
FLLSE+VGS GKV+GLDFS QL++A++RQ L +++CYK IEW+EGDA+DLPF DC FDA
Sbjct: 89 FLLSEKVGSTGKVMGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDA 148
Query: 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204
+TMGYGLRNVVD+ +A++E +RVLKPGSR+S+LDFNKS Q TT +Q WMIDNVVVPVA+
Sbjct: 149 VTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVAT 208
Query: 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y LA+EY+YLK SI +LTG++LE LALE GFS A HYE+SGG MGNLVA R
Sbjct: 209 VYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 261
|
|
| UNIPROTKB|P0A887 ubiE "bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 86/219 (39%), Positives = 127/219 (57%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+F +A YD +NDL+SFG HR+WKR + SG + G VLD+ G+GDL+ S VG
Sbjct: 28 VFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGE 87
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
GKV+ D +++ L M R+ L + N+E+V+ +A LPF D FD IT+ +GLRN
Sbjct: 88 TGKVVLADINESMLKMG--REKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRN 145
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKST-QPFTTAIQEWMIDNVVVPVASGYGL-AEE 211
V DK KAL +RVLKPG R+ VL+F+K +P + A + +V+ + S A+
Sbjct: 146 VTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSF-HVLPRIGSLVANDADS 204
Query: 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
Y+YL SIR L+ + + GF +Y L+ G++
Sbjct: 205 YRYLAESIRMHPDQDTLKAMMQDAGFESVDYYNLTAGVV 243
|
|
| TIGR_CMR|CPS_0294 CPS_0294 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 83/218 (38%), Positives = 125/218 (57%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+F +A YD +NDL+SFG HR+WKR + SG + G+ VLD+ G+GDL+ S+ VG
Sbjct: 48 VFHSVAKQYDVMNDLMSFGIHRLWKRFTIDASGVRPGNKVLDLAGGTGDLTAKFSKLVGR 107
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
+GKVI D + + L++ R L K +NIE+V+ +A LPF + FD +T+ +GLRN
Sbjct: 108 EGKVILADINSSMLNVG--RDKLRDKGLVQNIEYVQANAEYLPFEENTFDIVTIAFGLRN 165
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL-AEEY 212
V DK KAL + VLKPG R+ VL+F+K ++ N++ + E Y
Sbjct: 166 VTDKDKALRSIYSVLKPGGRLLVLEFSKPEHELLNKAYDFYSFNILPKMGELVAKDGESY 225
Query: 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
QYL SIR + L+ + + GF + L+GG++
Sbjct: 226 QYLAESIRMHPDQETLKDMMEKAGFEQTSFKNLTGGVV 263
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| UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 87/226 (38%), Positives = 129/226 (57%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+FS IA YD LN +LSF + + W+R AV SG G LDV CG+G + L+ VG
Sbjct: 16 IFSAIAHRYDLLNTVLSFNRDKAWRRFAVKVSGLSAGGRGLDVACGTGMFAIELARVVGP 75
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
G+V+GLDF++N L +A R+++ + K I+ V G+AL LPF D FD T+G+ LRN
Sbjct: 76 TGEVVGLDFNENMLEVA--RKNIARYSMEKIIKLVHGNALALPFPDNSFDVATIGFALRN 133
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS--GYGLAEE 211
V D K + E RV+KPG R+ L+ T P + W +VP+ G G+
Sbjct: 134 VPDIEKTILEMKRVVKPGGRVVNLELAHPTFPVFKQLY-WFYFEKLVPLLGKLGVGVDGP 192
Query: 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y YL +S++ F + ++K+ ++G K YEL+GG++ V T+
Sbjct: 193 YSYLPNSVKNFPHQQVIKKMFEDLGLVDVKCYELTGGIVAVHVGTK 238
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| TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 87/226 (38%), Positives = 129/226 (57%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+FS IA YD LN +LSF + + W+R AV SG G LDV CG+G + L+ VG
Sbjct: 16 IFSAIAHRYDLLNTVLSFNRDKAWRRFAVKVSGLSAGGRGLDVACGTGMFAIELARVVGP 75
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
G+V+GLDF++N L +A R+++ + K I+ V G+AL LPF D FD T+G+ LRN
Sbjct: 76 TGEVVGLDFNENMLEVA--RKNIARYSMEKIIKLVHGNALALPFPDNSFDVATIGFALRN 133
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS--GYGLAEE 211
V D K + E RV+KPG R+ L+ T P + W +VP+ G G+
Sbjct: 134 VPDIEKTILEMKRVVKPGGRVVNLELAHPTFPVFKQLY-WFYFEKLVPLLGKLGVGVDGP 192
Query: 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y YL +S++ F + ++K+ ++G K YEL+GG++ V T+
Sbjct: 193 YSYLPNSVKNFPHQQVIKKMFEDLGLVDVKCYELTGGIVAVHVGTK 238
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| UNIPROTKB|Q9KVQ6 ubiE "Ubiquinone/menaquinone biosynthesis methyltransferase ubiE" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 83/221 (37%), Positives = 126/221 (57%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
++F +A YD +NDL+S G HR+WKR + SGA+ G +LD+ G+GDL+ S VG
Sbjct: 36 QVFHSVAAKYDIMNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVG 95
Query: 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152
+G VI D + + L++ R L N+ +V+ +A +LPF D +FD IT+ + LR
Sbjct: 96 EKGHVILADINNSMLNVG--RDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLR 153
Query: 153 NVVDKRKALEESFRVLKPGSRISVLDFNKST-QPFTTAIQEWMIDNVVVPVASGY--GLA 209
NV DK KAL FRVLKPG R+ VL+F+K +P + + ++P A
Sbjct: 154 NVTDKDKALRSMFRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFH--ILPKMGQLIANDA 211
Query: 210 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
+ Y+YL SIR + L+ + E GF + +Y L+GG++
Sbjct: 212 DSYRYLAESIRMHPDQETLKGMMEEAGFEQTTYYNLTGGIV 252
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| TIGR_CMR|VC_0083 VC_0083 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 83/221 (37%), Positives = 126/221 (57%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
++F +A YD +NDL+S G HR+WKR + SGA+ G +LD+ G+GDL+ S VG
Sbjct: 36 QVFHSVAAKYDIMNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVG 95
Query: 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152
+G VI D + + L++ R L N+ +V+ +A +LPF D +FD IT+ + LR
Sbjct: 96 EKGHVILADINNSMLNVG--RDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLR 153
Query: 153 NVVDKRKALEESFRVLKPGSRISVLDFNKST-QPFTTAIQEWMIDNVVVPVASGY--GLA 209
NV DK KAL FRVLKPG R+ VL+F+K +P + + ++P A
Sbjct: 154 NVTDKDKALRSMFRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFH--ILPKMGQLIANDA 211
Query: 210 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
+ Y+YL SIR + L+ + E GF + +Y L+GG++
Sbjct: 212 DSYRYLAESIRMHPDQETLKGMMEEAGFEQTTYYNLTGGIV 252
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| TIGR_CMR|SO_4199 SO_4199 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 78/220 (35%), Positives = 123/220 (55%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+F +A YD +ND++SFG HR WKR + SGA+ G VLD+ G+GDL+ S VG
Sbjct: 28 VFHSVAAKYDIMNDVMSFGIHRFWKRYTIEVSGARPGMKVLDLAGGTGDLTAKFSHLVGD 87
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
+G+V+ D + + L + R L + N+ +V+ +A LPF D FD IT+ +GLRN
Sbjct: 88 KGEVVLADINDSMLKVG--RTKLRDRGIVSNVSYVQANAEALPFPDNHFDIITIAFGLRN 145
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL---AE 210
V DK AL RVLKPG ++ VL+F+K + + + V+P G + A+
Sbjct: 146 VTDKDAALRSMNRVLKPGGKLLVLEFSKPQHEVMRKVYD-LYSFKVLP-KMGQLITKDAD 203
Query: 211 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
Y+YL SIR L+++ ++ GF + + ++ G++
Sbjct: 204 SYEYLAESIRMHPDQDTLKQMMVDAGFEQVDYTNMTDGIV 243
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| TIGR_CMR|CBU_2017 CBU_2017 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 75/220 (34%), Positives = 126/220 (57%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
+ +F +A YD +NDL+S G HR WK A++ +TG +LD+ G+GDL+ +S V
Sbjct: 25 KHVFESVAAKYDLMNDLMSLGIHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLV 84
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G +G+V+ D + L++ R+ L+ + ++NI++++ DA LPF + FFD I +G+GL
Sbjct: 85 GDEGEVVIADINAAMLNVG--RRRLLDQGIFRNIQFIQADAEKLPFPNNFFDRIVIGFGL 142
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
RNV ++ AL+ RV+KPG + +L+F+K T A+ + ++ + EE
Sbjct: 143 RNVTNQLAALQSMHRVIKPGGFVVILEFSKPTLAPLKAVYDAYSFQLLPRLGKLVAKDEE 202
Query: 212 -YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
Y+YL SIR + L + GF ++ LSGG++
Sbjct: 203 SYRYLVESIRMHPDQEALLSKMTDAGFEDCDYHNLSGGIV 242
|
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| ZFIN|ZDB-GENE-040912-5 zgc:92445 "zgc:92445" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 56/167 (33%), Positives = 91/167 (54%)
Query: 87 LSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145
+S++ G Q + + D +K L + R + + WV GDA +LPF D FD
Sbjct: 156 VSDEEGPPQSRAVVCDINKEMLKVGKQRAE--DAGITTGLSWVAGDAEELPFDDDQFDMY 213
Query: 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205
T+ +G+RNV +AL+E+FRVLKPG R L+F+K T P + + ++PV
Sbjct: 214 TIAFGIRNVTHIEQALQEAFRVLKPGGRFMCLEFSKVTNPLLARLYD-AYSFQMIPVLGE 272
Query: 206 Y--GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
G + YQYL SIR+F + +++ + GF R +++ L+GG++
Sbjct: 273 VIAGDWKSYQYLVESIRKFPDQEIFKEMIEDAGFFRVQYFNLTGGIV 319
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q14GU4 | UBIE_FRAT1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4018 | 0.8404 | 0.864 | yes | no |
| C3K8U4 | UBIE_PSEFS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3772 | 0.8365 | 0.8398 | yes | no |
| O66128 | UBIE_MICLU | 2, ., 1, ., 1, ., 1, 6, 3 | 0.3789 | 0.8287 | 0.8658 | yes | no |
| Q8DGE4 | UBIE_THEEB | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5044 | 0.8599 | 0.9822 | yes | no |
| Q5X0X6 | UBIE_LEGPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3805 | 0.8677 | 0.892 | yes | no |
| A9MY97 | UBIE_SALPB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| A1JIF2 | UBIE_YERE8 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3946 | 0.8326 | 0.8525 | yes | no |
| Q66FT0 | UBIE_YERPS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| B1JP75 | UBIE_YERPY | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| B5BIX9 | UBIE_SALPK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| Q1CBG0 | UBIE_YERPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4144 | 0.8287 | 0.8486 | yes | no |
| Q5N4X9 | UBIE_SYNP6 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5429 | 0.8521 | 0.9399 | yes | no |
| A8G8B8 | UBIE_SERP5 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3846 | 0.8677 | 0.8884 | yes | no |
| B4TBR3 | UBIE_SALHS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| B0TZP1 | UBIE_FRAP2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3926 | 0.8404 | 0.864 | yes | no |
| B2K0Y4 | UBIE_YERPB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| A7MQL7 | UBIE_CROS8 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3946 | 0.8326 | 0.8525 | yes | no |
| B8DBZ5 | UBIE_LISMH | 2, ., 1, ., 1, ., 1, 6, 3 | 0.3652 | 0.8287 | 0.8987 | yes | no |
| A0Q549 | UBIE_FRATN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4018 | 0.8404 | 0.864 | yes | no |
| Q1CNB4 | UBIE_YERPN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| A4IXH9 | UBIE_FRATW | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4018 | 0.8404 | 0.864 | yes | no |
| Q0BNE2 | UBIE_FRATO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3972 | 0.8404 | 0.864 | yes | no |
| A9R431 | UBIE_YERPG | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| Q5WSQ8 | UBIE_LEGPL | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3849 | 0.8677 | 0.892 | yes | no |
| Q2A524 | UBIE_FRATH | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3972 | 0.8404 | 0.864 | yes | no |
| B2SFA2 | UBIE_FRATM | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4018 | 0.8404 | 0.864 | yes | no |
| Q3ED65 | MENG_ARATH | 2, ., 1, ., 1, ., n, 1, 2 | 0.6947 | 0.9494 | 0.9348 | yes | no |
| P0A2K5 | UBIE_SALTY | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| P72818 | UBIE_SYNY3 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5176 | 0.8715 | 0.9411 | N/A | no |
| Q5ZRH9 | UBIE_LEGPH | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3805 | 0.8677 | 0.892 | yes | no |
| B4TNX9 | UBIE_SALSV | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| C0Q3E1 | UBIE_SALPC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| P49016 | UBIE_LACLA | 2, ., 1, ., 1, ., 1, 6, 3 | 0.3914 | 0.8949 | 0.9126 | yes | no |
| Q8YLP4 | UBIE_NOSS1 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.4913 | 0.8871 | 0.9956 | yes | no |
| Q3MD91 | UBIE_ANAVT | 2, ., 1, ., 1, ., 1, 6, 3 | 0.4913 | 0.8793 | 0.9868 | yes | no |
| Q8D1I3 | UBIE_YERPE | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| A5II90 | UBIE_LEGPC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3849 | 0.8677 | 0.892 | yes | no |
| B5RFM8 | UBIE_SALG2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| Q5PKP4 | UBIE_SALPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| A7NAA1 | UBIE_FRATF | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3972 | 0.8404 | 0.864 | yes | no |
| Q31P90 | UBIE_SYNE7 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5429 | 0.8521 | 0.9399 | yes | no |
| B2IUM7 | UBIE_NOSP7 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5086 | 0.8793 | 0.9826 | yes | no |
| A7FDE0 | UBIE_YERP3 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| Q87TH4 | UBIE_VIBPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3918 | 0.8287 | 0.8223 | yes | no |
| B4SZ73 | UBIE_SALNS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3901 | 0.8326 | 0.8525 | yes | no |
| Q5NFE1 | UBIE_FRATT | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4018 | 0.8404 | 0.864 | yes | no |
| A4TR39 | UBIE_YERPP | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4099 | 0.8287 | 0.8486 | yes | no |
| A7MTX1 | UBIE_VIBHB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4009 | 0.8287 | 0.8223 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00002760001 | SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (258 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00001873001 | SubName- Full=Chromosome undetermined scaffold_123, whole genome shotgun sequence; (540 aa) | • | • | • | 0.933 | |||||
 | GSVIVG00006156001 | SubName- Full=Chromosome undetermined scaffold_165, whole genome shotgun sequence; (363 aa) | • | • | • | 0.918 | |||||
 | GSVIVG00002734001 | SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (336 aa) | • | 0.595 | |||||||
 | GSVIVG00036740001 | SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa) | • | 0.585 | |||||||
 | GSVIVG00021178001 | SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (587 aa) | • | • | 0.560 | ||||||
 | GSVIVG00027948001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa) | • | • | • | 0.549 | |||||
 | GSVIVG00025072001 | SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (166 aa) | • | 0.465 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 257 | |||
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-161 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-104 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 3e-83 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 5e-82 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 3e-79 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 3e-65 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 2e-48 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 8e-25 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-23 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-21 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 3e-20 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 8e-17 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-12 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 4e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-12 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 3e-11 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 4e-11 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-11 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 1e-09 | |
| TIGR01177 | 329 | TIGR01177, TIGR01177, TIGR01177 family protein | 7e-08 | |
| COG1041 | 347 | COG1041, COG1041, Predicted DNA modification methy | 1e-07 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 1e-07 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 2e-07 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 5e-07 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-06 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 7e-06 | |
| PRK06922 | 677 | PRK06922, PRK06922, hypothetical protein; Provisio | 1e-05 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 1e-05 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 1e-05 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 2e-05 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 3e-05 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 3e-05 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 5e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 9e-05 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 1e-04 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 1e-04 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 2e-04 | |
| COG4798 | 238 | COG4798, COG4798, Predicted methyltransferase [Gen | 3e-04 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 5e-04 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 8e-04 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 0.003 | |
| TIGR02081 | 194 | TIGR02081, metW, methionine biosynthesis protein M | 0.004 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 447 bits (1150), Expect = e-161
Identities = 191/244 (78%), Positives = 223/244 (91%), Gaps = 3/244 (1%)
Query: 14 SRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNV 73
SRS+ R V+C++ERQ LF+RIAPVYDNLNDLLS GQHRIWKRMAVSWSGAK GD V
Sbjct: 21 SRSRRRDV---VKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRV 77
Query: 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133
LD+CCGSGDL+FLLSE+VGS GKV+GLDFS QL++A+SRQ+L +K+CYKNIEW+EGDA
Sbjct: 78 LDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT 137
Query: 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193
DLPF DC+FDAITMGYGLRNVVD+ KA++E +RVLKPGSR+S+LDFNKSTQPFTT++QEW
Sbjct: 138 DLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEW 197
Query: 194 MIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 253
MIDNVVVPVA+GYGLA+EY+YLKSSI E+LTG++LEKLALE GFS AKHYE+SGGLMGNL
Sbjct: 198 MIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNL 257
Query: 254 VATR 257
VATR
Sbjct: 258 VATR 261
|
Length = 261 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 302 bits (777), Expect = e-104
Identities = 98/227 (43%), Positives = 140/227 (61%), Gaps = 3/227 (1%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
E+F IAP YD +NDLLSFG HR+W+R + W G + GD VLD+ CG+GDL+ L++ V
Sbjct: 14 AEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAV 73
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G G+V+GLDFS+ L++ R+ L N+E+V+GDA LPF D FDA+T+ +GL
Sbjct: 74 GKTGEVVGLDFSEGMLAVG--REKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL-AE 210
RNV D KAL E +RVLKPG R+ +L+F+K T P ++ + V+ + AE
Sbjct: 132 RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAE 191
Query: 211 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y YL SIR F ++L + E GF R ++ L+GG++ V +
Sbjct: 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238
|
Length = 239 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 3e-83
Identities = 96/227 (42%), Positives = 134/227 (59%), Gaps = 6/227 (2%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
QE+F RIAP YD LNDLLSFG HR+W+R AV G G VLDV CG+GDL+ L++
Sbjct: 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
+GKV G+DFS L +A + +L NIE+++ DA LPF D FDA+T+ +GL
Sbjct: 62 PDRGKVTGVDFSSEMLEVAKKKSELPL-----NIEFIQADAEALPFEDNSFDAVTIAFGL 116
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY-GLAE 210
RNV D +KAL E +RVLKPG R+ +L+F+K ++ + NV+ + AE
Sbjct: 117 RNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAE 176
Query: 211 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
Y YL SIR F + ++L + E GF ++ L+ G+ V +
Sbjct: 177 AYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 5e-82
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 8/227 (3%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
Q++F ++A YD +NDL+SFG HR+W+R +S G K GD VLDV CG+GD++ LL++ V
Sbjct: 14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSV 73
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G G+V+GLD S++ L +A ++ + K +N+E+V GDA +LPF D FDA+T+ +GL
Sbjct: 74 G-TGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNK-STQPFTTAIQEWMIDNVVVPVASGY--GL 208
RNV D KAL+E +RVLKPG R+ VL+F+K A + V+P+
Sbjct: 130 RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF-KYVLPLIGKLVAKD 188
Query: 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 255
AE Y+YL SIR F ++L+++ + GF ++ L+ G++
Sbjct: 189 AEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRG 235
|
Length = 238 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 3e-79
Identities = 109/160 (68%), Positives = 135/160 (84%)
Query: 98 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK 157
+GLDFS QL++A++RQ L +++CYK IEW+EGDA+DLPF DC FDA+TMGYGLRNVVD+
Sbjct: 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR 60
Query: 158 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217
+A++E +RVLKPGSR+S+LDFNKS Q TT +Q WMIDNVVVPVA+ Y LA+EY+YLK
Sbjct: 61 LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKY 120
Query: 218 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
SI +LTG++LE LALE GFS A HYE+SGG MGNLVA R
Sbjct: 121 SINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 160
|
Length = 160 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 3e-65
Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
++FS +A YD +ND++SFG HR+WK + G K G+ LDV G+GD +F LS+
Sbjct: 10 GDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSA 69
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
GS GKV+GLD ++N L + + NIE+++G+A +LPF D FD +T+ +GL
Sbjct: 70 GSSGKVVGLDINENMLKEGEKK---AKEEGKYNIEFLQGNAEELPFEDDSFDIVTISFGL 126
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLA- 209
RN D K L+E+FRVLKPG R+ L+F+K P + A + + V+P G A
Sbjct: 127 RNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKY--VMPFM-GKMFAK 183
Query: 210 --EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 249
+ YQYL+ SIR+F K L + + GF + L+GG+
Sbjct: 184 SYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGI 225
|
Length = 233 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 2e-48
Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 14/221 (6%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+F +I YD +N ++SF +H+ W++ + + G + LDVCCG+ D S L+E VG
Sbjct: 10 VFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGP 69
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
+G VIGLDFS+N LS+ + V A N+E V G+A++LPF D FD +T+G+GLRN
Sbjct: 70 EGHVIGLDFSENMLSVGRQK---VKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRN 126
Query: 154 VVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPV-----ASGYG 207
V D + L E +RV+KPG ++ L+ ++ T P F + ++P+ A Y
Sbjct: 127 VPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLY--FFYFKYIMPLFGKLFAKSY- 183
Query: 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 248
+EY +L+ S R+F +L ++ E GF + +GG
Sbjct: 184 --KEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGG 222
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 8e-25
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K+G VLD+ CG+G L+F+L+E++G +V+G+D S+ + A ++ K Y+N+E+
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA---KENAKKLGYENVEF 58
Query: 128 VEGDALDLP---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180
++GD +LP D FD + L ++ D K LEE RVLKPG + V D
Sbjct: 59 IQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPV 114
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-23
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR- 113
R ++ + GD VLDV CG G+ + L+ +VG +G+V+G+D S+ L++A R
Sbjct: 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64
Query: 114 -QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGS 172
N+E+V GDA LPF D FDA+ L+++ D +AL E RVL+PG
Sbjct: 65 AGLGP------NVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118
Query: 173 RISVLDF 179
R+ VLD
Sbjct: 119 RVVVLDT 125
|
Length = 241 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-21
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133
LDV CG+G L+ L+ + G++ V G+D S L++A R ++V GDA
Sbjct: 1 LDVGCGTGLLAEALARRGGAR--VTGVDLSPEMLALARKR---------APRKFVVGDAE 49
Query: 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
DLPF D FD + L ++ D +AL E RVLKPG ++
Sbjct: 50 DLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKL 90
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-20
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G+ VLD+ G G FL + +VG GKVIG+D + L+ A + KA Y N+E+
Sbjct: 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEF 132
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 178
G+ LP +D D I + N V DK + +E+FRVLKPG R ++ D
Sbjct: 133 RLGEIEALPVADNSVDVI-----ISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183
|
Length = 272 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 8e-17
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
G VLD+ CG+G L+ L+ +V G+D S L +A ++ A I +V+
Sbjct: 2 GARVLDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLELA---RENAKLALGPRITFVQ 57
Query: 130 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
GDA D FDA+ +G G ++++ L+ +LKPG R+
Sbjct: 58 GDAPDALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGGRL 99
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-12
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
+LD+ CG+G + L+ S V G+D SK L +A R + + +V DA
Sbjct: 1 ILDLGCGTGRVLRALARAGPSS--VTGVDISKEALELAKERL----RDKGPKVRFVVADA 54
Query: 133 LDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPG 171
DLPF + FD + + + R L E+ R+L+PG
Sbjct: 55 RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPG 96
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-12
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133
LD+ CG+G L L E + G+D S L A+ R + + DA+
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
DL FD + L ++ D R L R+LKPG +
Sbjct: 60 DLDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-12
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131
VLD+ CG+G L+ L+ G +V G+D S L +A + + N+E ++GD
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELA---RKAAAALLADNVEVLKGD 55
Query: 132 ALDLPFSDC-FFDAITMGYGLRNVV-DKRKALEESFRVLKPGSRI 174
A +LP FD I L ++V D + LEE+ R+LKPG +
Sbjct: 56 AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-11
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 30 ERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGD--NVLDVCCGSGDLSFLL 87
E QE +++I YD N +SF Q W+ V G VLDV G G+LS+
Sbjct: 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHF 69
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147
+ + V+ LD+++N L M D V + LPF D FD +
Sbjct: 70 KKVF--KYYVVALDYAENMLKMNLVADDKVVGSFEA-----------LPFRDKSFDVVMS 116
Query: 148 GYGLRNVVDKRKALEESFRV 167
+ L + K + E RV
Sbjct: 117 SFALHASDNIEKVIAEFTRV 136
|
Length = 226 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDN---VLDVCCGSGDLSFLLSEQV 91
F++ A YD + Q + KR+ ++ K VLD+ CG+G L+ L ++
Sbjct: 2 FNKAAKTYDRHAKI----QREMAKRL-LALLKEKGIFIPASVLDIGCGTGYLTRALLKR- 55
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
Q + I D S L+ A + +S +N++++ GDA LP D FD I L
Sbjct: 56 FPQAEFIANDISAGMLAQA---KTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108
Query: 152 RNVVDKRKALEESFRVLKPG 171
+ D +AL E RVLKPG
Sbjct: 109 QWCDDLSQALSELARVLKPG 128
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-11
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
GD VLD GSG + G +V+G++ ++A R+ L + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALA--RRRLALAGLAPRVRVVV 57
Query: 130 GDALDLP-FSDCFFDAITMG--YGLRNVVDKRK------ALEESFRVLKPGSRISVL 177
GDA +L D FD + YG R K L + R+LKPG + V+
Sbjct: 58 GDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVI 114
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (135), Expect = 1e-09
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 9/189 (4%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
VLD+ CG+G L+ L G V+G+D S L++A +R A +++V DA
Sbjct: 52 VLDIGCGTGRLALLA-RLGGRGAYVVGVDLSPEMLALARAR---AEGAGLGLVDFVVADA 107
Query: 133 LD--LPFSDCF-FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK-STQPFTT 188
L LPF D FD + L +++ KAL E RVLKPG R+ + D +
Sbjct: 108 LGGVLPFEDSASFDLVISLLVL-HLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
Query: 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 248
A D V+ L + + E L +L + L
Sbjct: 167 AALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLE 226
Query: 249 LMGNLVATR 257
L+ + R
Sbjct: 227 LLALGLEAR 235
|
Length = 257 |
| >gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 17/129 (13%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLV 117
R V+ + GD VLD CG+G FL+ + G G KVIG D M + + +
Sbjct: 172 RAMVNLARVTEGDRVLDPFCGTG--GFLI--EAGLMGAKVIGCDI---DWKMVAGARINL 224
Query: 118 SKACYKNIEWVEGDALDLPFSDCFFDAIT--MGYGL-------RNVVDKRKALEESFRVL 168
++ GDA LP S DAI YG ++LEE VL
Sbjct: 225 EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVL 284
Query: 169 KPGSRISVL 177
K I
Sbjct: 285 KSEGWIVYA 293
|
This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329 |
| >gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASS--RQD 115
R V+ + K G+ VLD CG+G L+ + G G +VIG D + + A
Sbjct: 187 RAMVNLARVKRGELVLDPFCGTG--GILI--EAGLMGARVIGSDIDERMVRGAKINLEYY 242
Query: 116 LVSKACYKNIEWVEGDALDLPFSDCFFDAIT--MGYG-----LRNVVDK--RKALEESFR 166
+ + DA +LP D DAI YG +D+ +ALE +
Sbjct: 243 GIEDYPVLKV----LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASE 298
Query: 167 VLKPGSRISV 176
VLKPG RI
Sbjct: 299 VLKPGGRIVF 308
|
Length = 347 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA---SSRQDLV 117
V K ++DV CG G S L+ + G+ K I L S Q + A ++ Q L
Sbjct: 110 GVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITL--SPVQAARANALAAAQGLS 167
Query: 118 SKACYKNIEWVEGDALDLPFSDCFFDAI-TMGYGLRNVVDKRKALEESFRVLKPGSRI 174
K ++ DAL+ PF D FD + +M G ++ DKRK ++E RV PG RI
Sbjct: 168 DKVSFQ-----VADALNQPFEDGQFDLVWSMESG-EHMPDKRKFVQELARVAAPGGRI 219
|
Length = 340 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G VLDV CG G F ++E V+G+D S N +S A R + + C ++E+
Sbjct: 265 KPGQKVLDVGCGIGGGDFYMAENFDVH--VVGIDLSVNMISFALERA--IGRKC--SVEF 318
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
D + D FD I + ++ DK F+ LKPG ++ + D+ +S
Sbjct: 319 EVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGT 376
|
Length = 475 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-07
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-RQDLVSKACYKNIE 126
+ GD + D+ G+G ++ + V + G+V ++ + L + + NI
Sbjct: 18 RPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDLIERNLRRFG----VSNIV 72
Query: 127 WVEGDALDLPFSDCF-FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
VEGDA + P DA+ +G + + LE R L+PG RI VL+
Sbjct: 73 IVEGDAPEAPEDLLPDPDAVFVGGSGGLLQE---ILEAVERRLRPGGRI-VLNA 122
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 39/170 (22%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G VLD+ CG+G L LL E+ G V G+D S + + S
Sbjct: 21 KPGGRVLDIGCGTGILLRLLRER-GFD--VTGVDPSPAAVLIFSLF-------------- 63
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187
DA D +D IT L ++ D L++ +LKPG +
Sbjct: 64 ---DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL------------- 107
Query: 188 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF 237
I + D+ A+ + L ++ F + + L++L + GF
Sbjct: 108 -LISTPLADDDARLFANWHYLRPRNTHIS-----FYSEESLKRLLEKAGF 151
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G +LD+ CG G L+ +E+ G V+G+ S+ QL+ A + + ++ N+E
Sbjct: 71 KPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYA--EKRIAARGLEDNVE- 125
Query: 128 VEGDALDLPFSDCFFDAIT-MG----YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182
V D + FD I +G G N D ++ + +LKPG R+ +
Sbjct: 126 VR--LQDYRDFEEPFDRIVSVGMFEHVGKENYDD---FFKKVYALLKPGGRMLLHSITGP 180
Query: 183 TQPFTTAI 190
Q F
Sbjct: 181 DQEFRRFP 188
|
Length = 283 |
| >gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW- 127
GD ++DV G G + ++ E+ ++ G+D S+N + ++ ++ W
Sbjct: 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRS------WN 470
Query: 128 -VEGDALDLP--FSDCFFDAITMGYGLR-------------NVVDKRKALEESFRVLKPG 171
++GDA++L F D I L N +K L+ ++ VLKPG
Sbjct: 471 VIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530
Query: 172 SRISVLD 178
RI + D
Sbjct: 531 GRIIIRD 537
|
Length = 677 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125
G G VL+ GSG L+ L+ VG +G V + ++ A R++L S+ +
Sbjct: 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTA--RENL-SEFGLGDR 147
Query: 126 EWVE-GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176
++ GD + + DA+ + ++ D LE LKPG + V
Sbjct: 148 VTLKLGDVREGIDEED-VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193
|
Length = 256 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVE 129
VLDV CG G +LSE + G V G+D S+ + +A + V NI++ +
Sbjct: 63 VLDVGCGGG----ILSEPLARLGASVTGIDASEKPIEVAKLHALESGV------NIDYRQ 112
Query: 130 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 189
DL + FD +T L +V D L +++KPG + + N++ + + A
Sbjct: 113 ATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA 172
Query: 190 I 190
I
Sbjct: 173 I 173
|
Length = 243 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+A+S + GD +LD+ CG+G ++ S VG GKV +D K++ ++ +R++
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVD--KDEKAINLTRRNAEKF 88
Query: 120 ACYKNIEWVEGDALD-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178
NI ++G+A + L + FD I +G G + ++ + S+ ++K G RI V+D
Sbjct: 89 GVLNNIVLIKGEAPEILFTINEKFDRIFIGGGSEKL---KEIISASWEIIKKGGRI-VID 144
|
Length = 198 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
GD + D+ G+G ++ + G G+VI ++ +++ ++ ++ + N+E VE
Sbjct: 35 GDRLWDIGAGTGSITIEWA-LAGPSGRVIAIE--RDEEALELIERNAA-RFGVDNLEVVE 90
Query: 130 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN--KSTQPFT 187
GDA + DAI +G G N+ + LE ++ LKPG R+ V + ++
Sbjct: 91 GDAPEALPDLPSPDAIFIG-GGGNI---EEILEAAWERLKPGGRL-VANAITLETLAKAL 145
Query: 188 TAIQEWMIDNVV-VPVASGYGLAEEY 212
A+++ +V V ++ G L
Sbjct: 146 EALEQLGGREIVQVQISRGKPLGGGT 171
|
Length = 187 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
V+DV G+G + + + V ++ I LD S +QL+ A ++ L K + +EGDA
Sbjct: 117 VVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQKEPL------KECKIIEGDA 169
Query: 133 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 173
DLPF + D + D ++ ++E++RVLK G +
Sbjct: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
|
Length = 340 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
M + K G VL++ GSG L+ + VG G V+ ++ +L + R + K
Sbjct: 64 MMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIP-ELVEIARRN--LEK 120
Query: 120 ACYKNIEWVEGDALD--LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
+N+ V GD F+ +DAI +G + E LK G R+
Sbjct: 121 LGLENVIVVVGDGRQGWPEFAP--YDAIHVGAAAPEIP------EALIDQLKEGGRL 169
|
Length = 210 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 32/134 (23%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN-IE 126
K GD VL+V GSG ++ + ++ KV+G+D N ++ ++ + N +E
Sbjct: 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDI--NPYAVECAKCNAKLNNIRNNGVE 76
Query: 127 WVEGDALDLPFSDCFFDAIT-----------------MGYGL------RNVVDKRKALEE 163
+ D + PF FD I + Y L R V+D + L+E
Sbjct: 77 VIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVID--RFLDE 133
Query: 164 SFRVLKPGSRISVL 177
R LKPG RI +L
Sbjct: 134 VGRYLKPGGRILLL 147
|
Length = 188 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
G VLD+ CG G L +LL E+ G+ I LD V++ K +
Sbjct: 12 PPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELD------------AAGVAECVAKGLSV 59
Query: 128 VEGDA-LDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRV 167
++GDA L F D FD + + L+ + R+ L+E R+
Sbjct: 60 IQGDADKGLEHFPDKSFDYVILSQTLQATRNPREVLDELLRI 101
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130
+LD+ CG G + L++ + ++ GLD SK + A+ R Y + +
Sbjct: 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------YPQVTFCVA 140
Query: 131 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 171
+ LPF+D DAI Y EE RV+KPG
Sbjct: 141 SSHRLPFADQSLDAIIRIYAPCKA-------EELARVVKPG 174
|
Length = 272 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125
+ +VLD CG G +S E+ GSQ V LD S L+ A + A
Sbjct: 39 PQRKFTHVLDAGCGPGWMSRYWRER-GSQ--VTALDLSPPMLAQARQKD-----AADH-- 88
Query: 126 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175
++ GD LP + FD ++ + AL E +RV++PG ++
Sbjct: 89 -YLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA 137
|
Length = 251 |
| >gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIG---LDFSKNQLSMASSRQDLVS 118
++++G K G V+D+ G G + + S VG +GKV + +K
Sbjct: 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR 100
Query: 119 KACYKNIEWVEGD--ALDLPFS-DCFFDAIT-MGYGLRNV--VDKRKALEESFRVLKPGS 172
+ Y N+E + AL P D A +N+ K F+ LKPG
Sbjct: 101 EPVYANVEVIGKPLVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGG 160
Query: 173 RISVLD 178
V D
Sbjct: 161 VYLVED 166
|
Length = 238 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-04
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 72 NVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASS---RQDLVSKACYKNIEW 127
VLD+ GSG ++ L E+ ++ V +D S L++A R L N+E+
Sbjct: 90 RVLDLGTGSGAIALALAKERPDAR--VTAVDISPEALAVARKNAARLGL------DNVEF 141
Query: 128 VEGDALDLPFSDCFFDAI 145
++ D + P FD I
Sbjct: 142 LQSDWFE-PLPGGKFDLI 158
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 19/136 (13%)
Query: 45 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104
L + L+ H +R AV + G V+ V G L + ++ VI +D S
Sbjct: 149 LTEPLATAYHGHAERAAV-----RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203
Query: 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKAL 161
+L +A ++ + E G + +T G G V++ AL
Sbjct: 204 ERLELA--KEAGGADVVVNPSEDDAGAEIL---------ELTGGRGADVVIEAVGSPPAL 252
Query: 162 EESFRVLKPGSRISVL 177
+++ L+PG + V+
Sbjct: 253 DQALEALRPGGTVVVV 268
|
Length = 350 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128
G VLDV CG G LLSE + G V G+D S+ + +A K IE+
Sbjct: 46 GLRVLDVGCGGG----LLSEPLARLGANVTGIDASEENIEVAKLHAK---KDPLLKIEYR 98
Query: 129 EGDALDLPFSDC-FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187
DL FD +T L +V D + + ++LKPG + N++ + +
Sbjct: 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYL 158
Query: 188 TAIQEWMIDNV 198
AI + +
Sbjct: 159 LAI--VGAEYI 167
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
G VLD+ CG G+L LL ++ +G I +D QD V + + ++
Sbjct: 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEID------------QDGVLACVARGVNVIQ 61
Query: 130 GDA-LDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRV 167
GD L F D FD + + L+ + + L+E RV
Sbjct: 62 GDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRV 101
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 100.0 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 100.0 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 100.0 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 100.0 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 100.0 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.97 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.96 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.95 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.93 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.9 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.9 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.9 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.89 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.89 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.89 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.88 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.88 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.87 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.86 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.86 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.85 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.85 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.85 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.84 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.84 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.84 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.83 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.83 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.83 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.83 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.83 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.82 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.82 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.82 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.82 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.82 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.81 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.81 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.79 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.79 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.79 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.78 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.77 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.77 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.75 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.75 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.75 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.74 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.74 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.73 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.73 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.73 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.72 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.72 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.72 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.71 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.71 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.7 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.7 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.7 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.69 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.69 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.69 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.69 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.69 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.68 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.68 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.67 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.67 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.66 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.66 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.66 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.65 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.65 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.65 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.64 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.64 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.64 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.64 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.64 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.63 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.62 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.61 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.61 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.61 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.61 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.61 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.6 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.6 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.59 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.59 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.58 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.58 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.58 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.57 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.57 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.56 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.56 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.56 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.56 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.55 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.54 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.54 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.54 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.53 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.52 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.52 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.52 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.52 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.52 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.51 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.51 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.51 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.5 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.49 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.49 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.49 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.48 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.48 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.47 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.47 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.46 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.46 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.45 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.45 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.45 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.43 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.43 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.42 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.41 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.39 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.36 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.34 | |
| PLN02366 | 308 | spermidine synthase | 99.34 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.33 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.3 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.29 | |
| PLN02476 | 278 | O-methyltransferase | 99.28 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.28 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.26 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.23 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.21 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.2 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.2 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.2 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.19 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 99.19 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.18 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.18 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.18 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.17 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 99.16 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.16 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.15 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.15 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.13 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.13 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.13 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.13 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.12 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.11 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.11 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.07 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.06 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.05 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.04 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.04 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.03 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.02 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.02 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.0 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 99.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.0 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.99 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.98 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.98 | |
| PLN02823 | 336 | spermine synthase | 98.97 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.96 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.94 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.92 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.91 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.87 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.87 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.86 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.84 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.83 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.82 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.81 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.8 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.78 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.77 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.77 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.76 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.75 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.75 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.75 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.74 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.73 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.72 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.71 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.71 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.7 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.68 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.67 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.67 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.66 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.65 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.63 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.59 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.59 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.55 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.54 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.5 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.49 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.47 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.46 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.46 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.45 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.43 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.42 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.38 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.37 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 98.36 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.32 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.31 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.29 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.29 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.27 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.21 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.21 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.2 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.18 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.17 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.17 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.17 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.16 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.15 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.13 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 98.12 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.07 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.99 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.97 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.95 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.93 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.91 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.9 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.89 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.88 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.86 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.71 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.7 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.67 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.66 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.59 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.56 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.53 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.53 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.48 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.48 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.41 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.39 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.33 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.27 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 97.14 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.11 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.99 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.89 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.82 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.74 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.73 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.72 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.71 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.55 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.51 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 96.42 | |
| PHA01634 | 156 | hypothetical protein | 96.4 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.34 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.26 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.24 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 96.13 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.08 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.03 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.01 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.94 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 95.84 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.8 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.78 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.66 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.56 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 95.51 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.45 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.37 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.19 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.08 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 95.0 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.97 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.95 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.92 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.66 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.64 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.36 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.33 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.32 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.3 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.28 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.22 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.0 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.78 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.42 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.41 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.31 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.12 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.09 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.04 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 92.55 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 92.49 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.35 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.16 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 92.12 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 92.11 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.93 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 91.5 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.48 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.45 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 91.44 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.15 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.15 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.08 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 90.99 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 90.82 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 90.42 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.06 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.85 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.72 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 89.66 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 89.65 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.59 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 89.54 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.36 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.25 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.02 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 88.9 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 88.86 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 88.72 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 88.65 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.18 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 88.07 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 87.88 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 87.87 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.73 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.71 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 87.71 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 87.64 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 87.62 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.57 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 87.52 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 87.42 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 87.17 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 87.06 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 87.05 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.89 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 86.68 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 86.44 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 86.4 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 86.32 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 86.19 | |
| PF10017 | 127 | Methyltransf_33: Histidine-specific methyltransfer | 86.1 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 85.83 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 85.78 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.47 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 85.05 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 84.85 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 84.83 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 84.79 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 84.79 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 84.69 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 84.58 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.44 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 84.38 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 84.13 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 84.1 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 83.96 | |
| PF06557 | 170 | DUF1122: Protein of unknown function (DUF1122); In | 83.95 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 83.94 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 83.93 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 83.43 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 83.42 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 83.38 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 83.25 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.87 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 82.84 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 82.63 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 82.46 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 82.36 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 82.33 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 82.09 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 81.81 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 81.69 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 81.48 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 81.16 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 81.07 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 81.06 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 80.65 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.57 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 80.35 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 80.34 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 80.18 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 80.07 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=240.30 Aligned_cols=227 Identities=41% Similarity=0.698 Sum_probs=207.0
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
..+.+++.|++++..||.+++..+++.+..|++.+...+...++.+|||+|||||..+..+++..+ ..+|+++|+|+.|
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~M 87 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESM 87 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHH
Confidence 357899999999999999999999999999999999999888999999999999999999999975 7799999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++.++++....+. .+++++++|++++|+++++||+|++.+.|++++|+++.|++++|+|||||.+++.++..+..+.
T Consensus 88 L~~a~~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 88 LEVAREKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred HHHHHHHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 9999999876543 3499999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHhhhhhhhhccCC--chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 187 TTAIQEWMIDNVVVPVASGYG--LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++..+...|..+... ....|+++..++..+.+.+++..+++++||+.+.+..+.+|+..++.+.|
T Consensus 165 ~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 165 LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 776666666665666666654 47779999999999999999999999999999999999999999998876
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=252.19 Aligned_cols=227 Identities=41% Similarity=0.730 Sum_probs=105.6
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
.++.++++||+++..||.++...+++.+..|++.+.......++.+|||+|||||..+..+++..++..+|+++|+|+.|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 35679999999999999999999999999999999998888889999999999999999999887777899999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++.++++.+..+. .++.++++|++++|+++++||+|++.+.+++++|+.+.+++++|+|||||.+++.+++.+..+.
T Consensus 85 L~~a~~k~~~~~~---~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~ 161 (233)
T PF01209_consen 85 LEVARKKLKREGL---QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPL 161 (233)
T ss_dssp HHHHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHH
T ss_pred HHHHHHHHHhhCC---CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCch
Confidence 9999999876543 4899999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHhhhhhhhhccC-C-chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 187 TTAIQEWMIDNVVVPVASGY-G-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...+..++... ..|..+.. . ....|.++..++..+.+.+++.++++++||+.++...+.+|+..+++|.|
T Consensus 162 ~~~~~~~y~~~-ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 162 LRALYKFYFKY-ILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp HHHHHHH------------------------------------------------------------------
T ss_pred hhceeeeeecc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 77777666654 34444433 2 33569999999999999999999999999999999999999999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=235.91 Aligned_cols=233 Identities=80% Similarity=1.348 Sum_probs=200.2
Q ss_pred cCCchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 25 VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 25 ~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
++..+.++++|+++|..||..+...+.+....|++.+.......++.+|||+|||+|..+..+++.+++..+|+++|+|+
T Consensus 29 ~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 29 VKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred hhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 35578899999999999999887777777888998888888888889999999999999999988765667999999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
+|++.|+++..........++.++++|++++++++++||+|++.+++++++++..++++++++|||||.+++.++..+..
T Consensus 109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 109 EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 99999987753211111258999999999999988999999999999999999999999999999999999999998887
Q ss_pred hhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 185 PFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
+.......++......+.....+....|.++..++.++++.+++.++++++||++++...+.+|...+++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 189 PFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 7767676777665555555555556778888889999999999999999999999999999999999999875
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=206.85 Aligned_cols=238 Identities=37% Similarity=0.562 Sum_probs=198.9
Q ss_pred eeeeccCC---chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCC--
Q 025144 20 FSYGRVRC---SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-- 94 (257)
Q Consensus 20 ~~~~~~~~---~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-- 94 (257)
+++..+.+ +..++..|++.|..||.+++..+.+.++.|...+...++..++.++||++||||..+.-+.+..+..
T Consensus 48 fgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~ 127 (296)
T KOG1540|consen 48 FGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFG 127 (296)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccC
Confidence 45555543 4557899999999999999999999999999999999999999999999999999999999987442
Q ss_pred ---ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCC
Q 025144 95 ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 95 ---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g 171 (257)
.+|++.|+|+.|+..++++.++.+....+++.++++|++++||++++||+.++.+.+.++.++++.+++.+|+||||
T Consensus 128 ~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 128 DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 69999999999999999998665544334699999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeecCCCchhHHHHHHHHHhhhhhhhhcc-CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE-EeeecCce
Q 025144 172 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG-YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK-HYELSGGL 249 (257)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~-~~~~~~g~ 249 (257)
|++.+.+++..+......+...+....+...... .+....|.++..++.++.+.+++..+.+++||..+. ...+..|+
T Consensus 208 Grf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~Gv 287 (296)
T KOG1540|consen 208 GRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLTFGV 287 (296)
T ss_pred cEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccceeee
Confidence 9999999998886554444443333332222222 245667999999999999999999999999999997 77777887
Q ss_pred eEEEeeeC
Q 025144 250 MGNLVATR 257 (257)
Q Consensus 250 ~~~~~~~k 257 (257)
..++.+-|
T Consensus 288 ~aIH~giK 295 (296)
T KOG1540|consen 288 VAIHSGIK 295 (296)
T ss_pred eeeehhcc
Confidence 77766543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=205.98 Aligned_cols=226 Identities=33% Similarity=0.628 Sum_probs=185.8
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.+.++++|++.+..||.+....+......|++.++..+...++.+|||+|||+|..+..+++..++..+++++|+|+.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 57899999999999999988777788899999898888888899999999999999999998866677999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
+.++++.+..+. +++.++++|..+.++++++||+|++.+++++.+++..+++++.++|+|||.+++.+...+.....
T Consensus 84 ~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 160 (231)
T TIGR02752 84 SVGRQKVKDAGL---HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGF 160 (231)
T ss_pred HHHHHHHHhcCC---CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHH
Confidence 999988754332 57899999999888778899999999999999999999999999999999999888766555443
Q ss_pred HHHHHHHHhhhhhhhhccC--CchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 188 TAIQEWMIDNVVVPVASGY--GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....++.... .+..... .....+.++......+.+.+++.++|+++||+++++..+.+|....++|+|
T Consensus 161 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 161 KQLYFFYFKYI-MPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHcCh-hHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 33333222111 1211111 122345566667778899999999999999999999999999999999987
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=194.03 Aligned_cols=215 Identities=23% Similarity=0.316 Sum_probs=176.3
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
..+.++++|+++++.||..+...+.+....|++.+...+. ..++.+|||+|||||..+..+++.. +.+++|+|+|+
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~ 84 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAE 84 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCH
Confidence 4678999999999999999877777777888877766542 2346799999999999999998874 46999999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
+|++.++++. ..+++|++++++++++||+|++.+++++++|+...+++++++|||. +.+.++..++.
T Consensus 85 ~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~ 151 (226)
T PRK05785 85 NMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDN 151 (226)
T ss_pred HHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCc
Confidence 9999987641 3578899999999999999999999999999999999999999993 44566666666
Q ss_pred hhHHHHHHHHHhhhhhhhhccCC-chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 185 PFTTAIQEWMIDNVVVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....+..++...........+. ....|.++..++..+.+.+++.++++++| ..++.+.+.+|+..+++++|
T Consensus 152 ~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 152 VIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 66666666665544444433333 35669999999999999999999999984 77899999999999999987
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=180.00 Aligned_cols=229 Identities=42% Similarity=0.752 Sum_probs=175.0
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
..+.++++|+..+..|+.............++..+...+...++.+|||+|||+|..+..+++..++..+++++|+++.+
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 88 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM 88 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHH
Confidence 46788999999999999765544444566677777777766678899999999999999999885335799999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++.++++....+.. .++.+..+|+.+.++++++||+|++..++++.+++..+++++.++|+|||.+++.+...+....
T Consensus 89 ~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~ 166 (239)
T PRK00216 89 LAVGREKLRDLGLS--GNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP 166 (239)
T ss_pred HHHHHHhhcccccc--cCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH
Confidence 99999987543221 5789999999887776788999999999999999999999999999999999998876655433
Q ss_pred HHHHHHHHHhhhhhhhhccC-CchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 187 TTAIQEWMIDNVVVPVASGY-GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++............ .....+........++++.+++.++|+++||++++...+.+|.+.+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 167 LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 33322222221111111111 112233344455567889999999999999999999999999999999986
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=173.67 Aligned_cols=222 Identities=43% Similarity=0.732 Sum_probs=172.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 31 RQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 31 ~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
++++|+..++.||..+..........++..+...+...++.+|||+|||+|..+..+++..+...+++++|+++.+++.+
T Consensus 1 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~ 80 (223)
T TIGR01934 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA 80 (223)
T ss_pred CHhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 36889999999999877666566677777777777777888999999999999999998863226899999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
+++.. . ..++.+..+|+.+.++++++||+|++..++++.+++..+++++.+.|+|||.+++.+...+........
T Consensus 81 ~~~~~-~----~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 155 (223)
T TIGR01934 81 KKKSE-L----PLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKF 155 (223)
T ss_pred HHHhc-c----CCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHH
Confidence 98865 1 157899999999887777889999999999999999999999999999999999988766554333333
Q ss_pred HHHHHhhhhhhhhccCC-chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 191 QEWMIDNVVVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
..++............. ....+.+.......+.+.+++..+|+++||+++......++...+++++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 156 YKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 33333222221121111 22233444455566789999999999999999999999898888888876
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=174.90 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=144.1
Q ss_pred chhHHHHhhhhhhhhhhhhhh------hhh--------hhHHHHHHHHHhhhCC-----CCCCeEEEecCCCChhHHHHH
Q 025144 28 SSERQELFSRIAPVYDNLNDL------LSF--------GQHRIWKRMAVSWSGA-----KTGDNVLDVCCGSGDLSFLLS 88 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~------~~~--------~~~~~~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~ 88 (257)
.+.+.++||..+..|+..... ... ..+..+...++..+.+ .++.+|||||||+|..+..++
T Consensus 58 ~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La 137 (340)
T PLN02244 58 KEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLA 137 (340)
T ss_pred HHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHH
Confidence 467899999888888765321 000 0112233334455555 567899999999999999999
Q ss_pred HHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcc
Q 025144 89 EQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVL 168 (257)
Q Consensus 89 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 168 (257)
+.+ +.+|+++|+|+.|++.++++....+.. .++.++.+|+.++++++++||+|++..+++|+++...++++++++|
T Consensus 138 ~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~--~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 138 RKY--GANVKGITLSPVQAARANALAAAQGLS--DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred Hhc--CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 875 579999999999999999887654332 5799999999998888899999999999999999999999999999
Q ss_pred cCCCEEEEEeecCCCchh----HHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 169 KPGSRISVLDFNKSTQPF----TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 169 k~gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
||||.+++.++....... ............ ... + ....+.+.+++.++++++||++++..+
T Consensus 214 kpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i----~~~------~-----~~p~~~s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 214 APGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKI----CAA------Y-----YLPAWCSTSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred CCCcEEEEEEecccccccccccCCHHHHHHHHHH----Hhh------c-----cCCCCCCHHHHHHHHHHCCCCeeEeee
Confidence 999999998764322110 000000000000 000 0 001245889999999999999999887
Q ss_pred ecC
Q 025144 245 LSG 247 (257)
Q Consensus 245 ~~~ 247 (257)
+..
T Consensus 279 ~s~ 281 (340)
T PLN02244 279 WSE 281 (340)
T ss_pred CcH
Confidence 753
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=164.25 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=119.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.|+++...... ..++.++++|++++++++++||+|++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 5669999999999999988754 67999999999999999987543221 147999999999887777899999999
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHH-HHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE-WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
.+++|++++..++++++++|||||.+++.+.+............ .+.... .+. +. .....++++++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~-lp~----gt--------h~~~~f~tp~e 272 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRW-LPK----GT--------HQWSSFVTPEE 272 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhc-CCC----CC--------cCccCCCCHHH
Confidence 99999999999999999999999999998876543211111100 000000 000 00 01124779999
Q ss_pred HHHHHHHcCceeeEEeee
Q 025144 228 LEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~ 245 (257)
+..+|+++||++++...+
T Consensus 273 L~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 273 LSMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHHcCCeEEEEeee
Confidence 999999999999987544
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=162.57 Aligned_cols=181 Identities=22% Similarity=0.268 Sum_probs=135.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 32 ~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
.-+|+..+..||..... ....+.++..++..... .++.+|||+|||+|..+..+++.+ +..+++++|.|+.|++.+
T Consensus 77 ~~~y~~lA~~YD~~~~~--~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A 153 (340)
T PLN02490 77 FWFYRFLSIVYDHIINP--GHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKA 153 (340)
T ss_pred eeEccceeeecCCCeec--CcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 34667788888875321 12234444444444433 457799999999999999998875 457999999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
+++... .++.++.+|++++++++++||+|++..+++++++....+++++++|||||.+++.+...+......
T Consensus 154 ~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r-- 225 (340)
T PLN02490 154 KQKEPL------KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSR-- 225 (340)
T ss_pred HHhhhc------cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHH--
Confidence 987531 478899999999888888999999999999999999999999999999999988754432211100
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
... .....+.+.+++.++|+++||+.+++.+..
T Consensus 226 --~~~---------------------~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 226 --FFA---------------------DVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred --Hhh---------------------hhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 000 001124578999999999999999877653
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=149.31 Aligned_cols=160 Identities=68% Similarity=1.145 Sum_probs=133.1
Q ss_pred EEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 98 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 98 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+|+|++|++.|+++..........+++++++|+.++++++++||+|++.+++++++|+...+++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776432211124799999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 178 DFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
++..+..........|+......+..........|.++..++..+.+.+++.++|+++||+.++.....+|+..++++-|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 160 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 160 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEeeC
Confidence 99887766665566666544455554444556778888889999999999999999999999999999999998888754
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=155.66 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=136.1
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
++.+++.|++.+..|+.... .+....+.+...+...++.+|||+|||+|..+..+.+. +.+++++|+|+.|+
T Consensus 6 k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l 77 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPML 77 (251)
T ss_pred HHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHH
Confidence 56788999999999997543 34455555666666556789999999999999888764 57999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
+.++++. ....++++|++.+++++++||+|+++.++++.+++..++.++.++|+|||.+++..+........
T Consensus 78 ~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el 149 (251)
T PRK10258 78 AQARQKD--------AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPEL 149 (251)
T ss_pred HHHHhhC--------CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHH
Confidence 9998875 34578899999988888899999999999999999999999999999999999988765443221
Q ss_pred HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCcee
Q 025144 188 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSR 239 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 239 (257)
........ . .....++.+.+++.+++...|+..
T Consensus 150 ~~~~~~~~--------~-----------~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 150 HQAWQAVD--------E-----------RPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHhc--------c-----------CCccccCCCHHHHHHHHHhCCcee
Confidence 11110000 0 011234678899999999888763
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=156.05 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=126.2
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...++..+.+.++.+|||||||+|..+..+++.+ +.+|+++|+|+.+++.++++.... .++.+..+|+.+.++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~-----~~i~~~~~D~~~~~~ 113 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDK-----NKIEFEANDILKKDF 113 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcC-----CceEEEECCcccCCC
Confidence 3455566788899999999999999999998763 569999999999999999886431 579999999998888
Q ss_pred CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCch-hHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 138 SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
++++||+|++..+++|++ ++..++++++++|||||.+++.++...... ..........
T Consensus 114 ~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~------------------- 174 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK------------------- 174 (263)
T ss_pred CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH-------------------
Confidence 888999999998888875 789999999999999999999887543321 1111111111
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.....+.+..++.++|+++||++++..+..
T Consensus 175 --~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 175 --KRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred --hcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 001135688999999999999999887653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=155.28 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=116.1
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.++..+...++.+|||+|||+|.++..+++.. |+.+++|+|+|+.|++.++++ ++.++++|+.+++ ++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-CC
Confidence 34555666778899999999999999999885 678999999999999998653 5788999998764 45
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
++||+|+++.++||++++..++++++++|||||.+++........+...................... ....
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--------~~~~ 159 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIP--------FRVG 159 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccc--------cccC
Confidence 78999999999999999999999999999999999886543222111111111110000000000000 0001
Q ss_pred hccCCHHHHHHHHHHcCceeeEEe
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
..+.+.+++.++|+++||++....
T Consensus 160 ~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 160 AVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred cCCCCHHHHHHHHHhCCCeEEEEe
Confidence 234689999999999999855433
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=157.39 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=130.5
Q ss_pred HHhhhhhhhhhhhhhhhhhhh--HHHHHH---HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 33 ELFSRIAPVYDNLNDLLSFGQ--HRIWKR---MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 33 ~~y~~~a~~y~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
..||.+++.|+........+. .....+ .++..+. .++.+|||+|||+|..+..+++. +.+|+++|+|++|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l 79 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMI 79 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHH
Confidence 456777777766422111111 111111 2222333 44579999999999999999876 57999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
+.|+++....+.. .++.++++|+.+++ .++++||+|++..++++++++..+++++.++|||||.+++..++......
T Consensus 80 ~~a~~~~~~~g~~--~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~ 157 (255)
T PRK11036 80 QRAKQAAEAKGVS--DNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLM 157 (255)
T ss_pred HHHHHHHHhcCCc--cceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHH
Confidence 9999987654422 57899999998764 45688999999999999999999999999999999999888766532211
Q ss_pred HHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 187 TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
...+.. +.... ........... ......++++++.++++++||++++..-
T Consensus 158 ~~~~~~----~~~~~-~~~~~~~~~~~---~~p~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 158 HNMVAG----NFDYV-QAGMPKRKKRT---LSPDYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred HHHHcc----ChHHH-HhcCccccccC---CCCCCCCCHHHHHHHHHHCCCeEeeeee
Confidence 111100 00000 00000000000 0001246889999999999999886543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=153.01 Aligned_cols=170 Identities=15% Similarity=0.242 Sum_probs=120.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..++.+|||+|||+|..+..+++.+ .++.+++++|+|+.|++.|++++...+.. .++.++++|+.+.+++ .+|+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAIE--NASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEeCChhhCCCC--CCCEE
Confidence 3467899999999999999888743 36789999999999999999998654322 4799999999887653 49999
Q ss_pred EecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHH-HHHHHHHhhhhhhhhccCCchhhhh---hhHHHH
Q 025144 146 TMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTT-AIQEWMIDNVVVPVASGYGLAEEYQ---YLKSSI 219 (257)
Q Consensus 146 ~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 219 (257)
+++.++|++++ ...++++++++|||||.+++.+.......... .....+... . ...... ..... ......
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~-~--~~~g~s-~~ei~~~~~~~~~~ 205 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDF-K--RANGYS-ELEISQKRSMLENV 205 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHH-H--HHcCCC-HHHHHHHHHHHHhh
Confidence 99999999863 56899999999999999999886544433222 122211111 0 011111 11111 111223
Q ss_pred hccCCHHHHHHHHHHcCceeeEEee
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
....+.++..++|+++||+.++.+-
T Consensus 206 ~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 206 MLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred cccCCHHHHHHHHHHcCchhHHHHH
Confidence 4456999999999999998776443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=155.30 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=124.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.++.+|||+|||+|..+..+++.+ .|+.+++++|+|+.|++.|+++++..+.. .++.++++|+.+.+++ .+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCCCC--CCCEEe
Confidence 467799999999999999998874 35789999999999999999987654322 4789999999987654 589999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhH-HHHHHHHHhhhhhhhhccCCchhhhhh---hHHHHh
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQY---LKSSIR 220 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 220 (257)
+..++|+++ +...++++++++|+|||.+++.+......... ..+...... .. ...... ...... ......
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~-~~--~~~g~~-~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQ-FK--RANGYS-ELEISQKRTALENVM 203 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHH-HH--HHcCCC-HHHHHHHHHHHhccC
Confidence 999999985 46789999999999999999988655443322 111111110 00 000110 011101 111233
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
..++.+++.++++++||+.++..... +.+..++++|
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~-~~~~~~~~~~ 239 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQC-FNFGSLVAVK 239 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHH-HhHhHHheeC
Confidence 46799999999999999977654332 3344455543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=139.81 Aligned_cols=170 Identities=24% Similarity=0.292 Sum_probs=131.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCee-EEEccCCCCC-CCCCc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE-WVEGDALDLP-FSDCF 141 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~ 141 (257)
++.......|||+|||||..-.+.--. |...|+++|+++.|.+.+.+.+++... .++. ++.++.++++ +++++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~---~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKP---LQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccC---cceEEEEeechhcCcccccCC
Confidence 344455557899999999988766433 678999999999999999998866532 4565 9999999987 78999
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
||.|++..+++...++.+.|+++.++|+|||.++++++..........+.+...+......... +
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dG---------------C 210 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDG---------------C 210 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccc---------------e
Confidence 9999999999999999999999999999999999999988776665555554444322222222 2
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeecCceeEEEe
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 254 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~ 254 (257)
.++. +..+.|+++-|+..+......|...+++
T Consensus 211 ~ltr-d~~e~Leda~f~~~~~kr~~~~ttw~~V 242 (252)
T KOG4300|consen 211 VLTR-DTGELLEDAEFSIDSCKRFNFGTTWVIV 242 (252)
T ss_pred EEeh-hHHHHhhhcccccchhhcccCCceEEEE
Confidence 2233 4457888999999998888776554444
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=146.96 Aligned_cols=160 Identities=24% Similarity=0.289 Sum_probs=122.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
-++.+|||+|||-|.++..+++. +++|+|+|.++++++.|+....+.+ -++.+.+.+.+++....++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEE
Confidence 46889999999999999999987 6899999999999999998876543 3566888888887665689999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
..+++|.+++..+++.+.+++||||.+++.+.+.........+.. .+....- ..+.. +....+..+++
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~--ae~vl~~---vP~gT-------H~~~k~irp~E 198 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG--AEYVLRI---VPKGT-------HDYRKFIKPAE 198 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH--HHHHHHh---cCCcc-------hhHHHhcCHHH
Confidence 999999999999999999999999999999888644333221111 1111110 00111 12234668899
Q ss_pred HHHHHHHcCceeeEEeeec
Q 025144 228 LEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~~ 246 (257)
+...+..+|+++.+...+.
T Consensus 199 l~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 199 LIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred HHHhcccCCceEEeecceE
Confidence 9999999999988866553
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=161.94 Aligned_cols=161 Identities=24% Similarity=0.352 Sum_probs=125.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
+.+...+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++..... .++.+..+|+.+.+++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~----~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK----CSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC----CceEEEEcCcccCCCC
Confidence 444555556778899999999999999998874 5799999999999999988764322 4789999999988877
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+++||+|++..+++|++++..++++++++|||||.+++.++.............+.. ..
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------------------~~ 388 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---------------------QR 388 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---------------------hc
Confidence 789999999999999999999999999999999999998876533222111111111 00
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.....+.+++.++++++||+++...++.
T Consensus 389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 389 GYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred CCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 1135688999999999999998776643
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=141.98 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=110.1
Q ss_pred HHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 57 WKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
+.+.+.++.. ..++.+|||+|||+|.++..+.+. +.+++++|+++.+++. . +......+....
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~ 72 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK--R-----------NVVFDNFDAQDP 72 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH--T-----------TSEEEEEECHTH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh--h-----------hhhhhhhhhhhh
Confidence 4444554553 567889999999999999999665 4599999999999987 1 223333333343
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
..++++||+|++..+++|++++..++++++++|||||.+++.++..... .......|.. ...
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~-----------------~~~ 134 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDP-SPRSFLKWRY-----------------DRP 134 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSH-HHHHHHHCCG-----------------TCH
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcch-hhhHHHhcCC-----------------cCc
Confidence 4567899999999999999999999999999999999999998876431 1111111110 000
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
......+++.+++.++++++||++++
T Consensus 135 ~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 135 YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 00223688999999999999999876
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=136.02 Aligned_cols=109 Identities=34% Similarity=0.572 Sum_probs=96.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 145 (257)
..+.+|||+|||+|.++..+++..+++.+++|+|+|++|++.|+++++..+. ++++++++|+.+++ ++ +.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhccccccC-CCeeEE
Confidence 3567999999999999999996656788999999999999999998766543 58999999999976 44 789999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++..+++++.++..+++++.+.|+++|.+++.+..
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999988876
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-20 Score=144.60 Aligned_cols=168 Identities=32% Similarity=0.487 Sum_probs=125.6
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.++..+...+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++..... .++.+...|....
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~ 81 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG----PNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC----CceEEEecccccC
Confidence 345556667778888999999999999999999886567799999999999999988732221 5789999999887
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh----HHHHHHHHHhhhhhhhhccCCchhh
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF----TTAIQEWMIDNVVVPVASGYGLAEE 211 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (257)
++++++||+|++..+++++.++..+++++.++|||||.+++.+........ ......... .
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------- 146 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN-F-------------- 146 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH-H--------------
Confidence 777789999999999999999999999999999999999887754322110 001111100 0
Q ss_pred hhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
............++.++|+++||++++....
T Consensus 147 ---~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 147 ---WSDHFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred ---HHhcCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 0000112334568999999999998766554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=145.85 Aligned_cols=157 Identities=27% Similarity=0.395 Sum_probs=120.8
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.+.++.+|||+|||+|..+..+++.+++..+++++|+++.+++.++++....+. .++.+..+|++++++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCCCCCCceeEE
Confidence 466888999999999998888887766667899999999999999998755432 57899999999888878899999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
+++.++++.++....+++++++|||||.+++.++................ .........+.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 211 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL-------------------YAGCVAGALQE 211 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHH-------------------HhccccCCCCH
Confidence 99999999999999999999999999999998765433211110000000 00011124578
Q ss_pred HHHHHHHHHcCceeeEEee
Q 025144 226 KDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~ 244 (257)
+++.++|+++||..++...
T Consensus 212 ~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 212 EEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHHHHHHHCCCCceEEEe
Confidence 8999999999999876543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=143.60 Aligned_cols=155 Identities=25% Similarity=0.368 Sum_probs=115.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCC----CeeEEEccCCCCCCCCCcccEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK----NIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D~v 145 (257)
+.+|||+|||+|-++.+|++. ++.|+|+|.+++|++.|++.. ...+.... ++.+.+.|++.. .+.||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhc---cccccee
Confidence 478999999999999999987 689999999999999999984 33322223 356677777765 3559999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhh--hhhhhccCCchhhhhhhHHHHhccC
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV--VVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+|..+++|..|+..++..+.+.|||||.+++.+.++.-..+...+ ++.+.. +.|... ..+..+.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i--~~~E~vl~ivp~Gt------------h~~ekfi 228 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI--FLAEIVLRIVPKGT------------HTWEKFI 228 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc--cHHHHHHHhcCCCC------------cCHHHcC
Confidence 999999999999999999999999999999998876544332211 111111 111111 1234577
Q ss_pred CHHHHHHHHHHcCceeeEEeee
Q 025144 224 TGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
++.++.++++.+|+++..+...
T Consensus 229 ~p~e~~~~l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 229 NPEELTSILNANGAQVNDVVGE 250 (282)
T ss_pred CHHHHHHHHHhcCcchhhhhcc
Confidence 9999999999999987765543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-20 Score=148.59 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=116.1
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
...+...++.+|||||||+|.++..+++. ++ ..|+|+|+|+.++.+++...+..+.. .++.++.+|+++++. +++
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~--~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGND--QRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEeCCHHHCCC-cCC
Confidence 33444456789999999999999999887 33 36999999999987655432221111 479999999999887 688
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
||+|++..+++|..++..+++++++.|+|||.+++.++..+........... .|.... ....
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~-----------------~y~~~~-~~~~ 251 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD-----------------RYAKMR-NVYF 251 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh-----------------HHhcCc-ccee
Confidence 9999999999999999999999999999999998876443222111000000 000000 0001
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeec
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
..+..++.++|+++||+++++.+..
T Consensus 252 lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 252 IPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred CCCHHHHHHHHHHcCCceEEEEeCC
Confidence 3488999999999999999877653
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=141.87 Aligned_cols=112 Identities=24% Similarity=0.306 Sum_probs=97.2
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
..+.++..+...++.+|||||||+|.++..+++.+ ++.+++++|+|+.|++.++++. +++.++.+|+.++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~ 89 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ 89 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC
Confidence 44455566667778899999999999999999885 6779999999999999998875 57889999998764
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++||+|+++.+++++++...++++++++|||||.+++..
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 34689999999999999999999999999999999998764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=139.01 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh---CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
...+.+.+...+...++.+|||+|||+|.++..+++.. +++.+++++|+|+.|++.++++... .++.+...
T Consensus 45 ~~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~ 118 (232)
T PRK06202 45 RGLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQA 118 (232)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEE
Confidence 34444444444444667799999999999998887643 3456999999999999999887532 35667777
Q ss_pred cCCCCCCCCCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh-ccCC
Q 025144 131 DALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA-SGYG 207 (257)
Q Consensus 131 d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (257)
+...++.++++||+|++++++||+++. ..++++++++++ |.+++.++..+........... .+.. +...
T Consensus 119 ~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~------~~~~~~~~~ 190 (232)
T PRK06202 119 VSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGT------RLLSRSSFV 190 (232)
T ss_pred ecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHH------HHhccCcee
Confidence 766666567899999999999999874 579999999998 5666777666532221111110 1110 0000
Q ss_pred chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.. ....++.++++.+++.+++++ ||++...+.+.
T Consensus 191 ~~----d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 191 HT----DGLLSVRRSYTPAELAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred ec----cchHHHHhhcCHHHHHHHhhC-CCeEEecccee
Confidence 00 012456678999999999999 99988877663
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=143.81 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=112.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+...++.+|||+|||+|.++..++.. ++ ..|+|+|+|+.|+.+++...+.... ..++.+...++++++.. ++||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-CCcC
Confidence 345566789999999999999888876 33 3799999999999875433221111 14788888998887653 5899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+|++..+++|..++...|++++++|||||.+++.+............ +. ..|.... .+....
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~----------p~-------~ry~k~~-nv~flp 252 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLV----------PK-------DRYAKMK-NVYFIP 252 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccC----------ch-------HHHHhcc-ccccCC
Confidence 99999999999999999999999999999999876543221100000 00 0000000 001245
Q ss_pred CHHHHHHHHHHcCceeeEEeee
Q 025144 224 TGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+..++.++|+++||+.+++...
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEec
Confidence 8899999999999999987654
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=141.43 Aligned_cols=194 Identities=21% Similarity=0.262 Sum_probs=126.8
Q ss_pred chhHHHHhhhhhhhhhhhhhh-h----------hh---hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC
Q 025144 28 SSERQELFSRIAPVYDNLNDL-L----------SF---GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~-~----------~~---~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 93 (257)
.+.++..||-..+.|..+-+. . .. ..+....+.+...+.+.++.+|||||||.|.++..+++++
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-- 84 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-- 84 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--
Confidence 566777777666666543211 0 00 1122223445556688999999999999999999999997
Q ss_pred CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc--ccHHHHHHHHHhcccCC
Q 025144 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPG 171 (257)
Q Consensus 94 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~g 171 (257)
+.+|+|+.+|++..+.+++++...+.. .++.+...|..+++ ++||.|++..++.|+ .+...+++++.++||||
T Consensus 85 g~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 85 GCHVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp --EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred CcEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 689999999999999999999876654 67999999998864 489999999999999 46789999999999999
Q ss_pred CEEEEEeecCCCchhHHHH---HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 172 SRISVLDFNKSTQPFTTAI---QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
|.+++.............. ..|+.... .| ...+.+.+++...++++||++.++..+.
T Consensus 160 G~~~lq~i~~~~~~~~~~~~~~~~~i~kyi-FP-----------------gg~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 160 GRLVLQTITHRDPPYHAERRSSSDFIRKYI-FP-----------------GGYLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp EEEEEEEEEE--HHHHHCTTCCCHHHHHHT-ST-----------------TS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred cEEEEEecccccccchhhcCCCceEEEEee-CC-----------------CCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 9998877665443321100 02222111 00 0124477889899999999988877653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-20 Score=124.65 Aligned_cols=95 Identities=37% Similarity=0.642 Sum_probs=84.3
Q ss_pred EEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccC
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 153 (257)
||+|||+|..+..+++. +..+++++|+++++++.++++... .++.+...|..++++++++||+|++..++++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceee
Confidence 89999999999999987 578999999999999999998754 3566999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcccCCCEEEE
Q 025144 154 VVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 154 ~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
++++..+++++.|+|||||.+++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=139.07 Aligned_cols=194 Identities=23% Similarity=0.286 Sum_probs=144.3
Q ss_pred CCchhHHHHhhhhhhhhhhhhhh--------------hhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh
Q 025144 26 RCSSERQELFSRIAPVYDNLNDL--------------LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~ 91 (257)
...+.++..||...+.|....+. .....+..-.+.+...+++.||.+|||||||.|.+++++++++
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc
Confidence 34566777777666666554211 1111233344556667899999999999999999999999996
Q ss_pred CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhccc
Q 025144 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLK 169 (257)
Q Consensus 92 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk 169 (257)
+.+|+|+++|+++.+.+++++...+.. .+++++..|..++. +.||-|++..+++|+.. ....++++++.|+
T Consensus 95 --~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 95 --GVTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLK 167 (283)
T ss_pred --CCEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence 789999999999999999998776654 58999999998874 55999999999999964 8999999999999
Q ss_pred CCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 170 PGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 170 ~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
|||.+++.+...+..... ....|... .+.| ...+.+.+++.+..+++||.+.+...+
T Consensus 168 ~~G~~llh~I~~~~~~~~-~~~~~i~~-yiFP-----------------gG~lPs~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 168 PGGRMLLHSITGPDQEFR-RFPDFIDK-YIFP-----------------GGELPSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred CCceEEEEEecCCCcccc-cchHHHHH-hCCC-----------------CCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence 999999988776664432 11122211 1000 012457788888899999988876654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=139.67 Aligned_cols=142 Identities=30% Similarity=0.418 Sum_probs=111.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEh
Confidence 34689999999999999999884 67789999999999999988763 47889999999888778899999999
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHH
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 228 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (257)
.++++..++...++++.++|+|||.+++.++...... .+..... .....+.+.+++
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~---~~~~~~~---------------------~~~~~~~~~~~~ 161 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLH---ELRQSFG---------------------QHGLRYLSLDEL 161 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHH---HHHHHHH---------------------HhccCCCCHHHH
Confidence 9999999999999999999999999998876543321 1111110 011235577888
Q ss_pred HHHHHHcCceeeEEe
Q 025144 229 EKLALEIGFSRAKHY 243 (257)
Q Consensus 229 ~~~l~~~Gf~~~~~~ 243 (257)
.+++..+ |..+...
T Consensus 162 ~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 162 KALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHHh-cCCcEEE
Confidence 8888877 7665543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=125.85 Aligned_cols=106 Identities=34% Similarity=0.545 Sum_probs=88.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~ 147 (257)
|+.+|||+|||+|..+..+++.. ++.+++++|+|+++++.++++....... +++++++.|+ ..... .+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS--DRITFVQGDAEFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEESCCHGGTTT-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECccccCccc-CCCCCEEEE
Confidence 57899999999999999999964 6889999999999999999998443333 7999999999 33333 356999999
Q ss_pred cc-cccCc---ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GY-GLRNV---VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~-~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.. +++++ ++..++++++++.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98 55533 457889999999999999998865
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=140.19 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=119.4
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+.......+..+|||||||+|..+..+++++ |..+++++|. +.+++.++++....+.. ++++++.+|+.+.++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~--~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc--ceEEEEecCccCCCC
Confidence 3445556667778899999999999999999995 7789999997 78999999887665443 579999999987555
Q ss_pred CCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCc--hhHHHHHHHHHhhhhhhhhccCCchhhhh
Q 025144 138 SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQ--PFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
+ .+|+|++.+++|++++ ...++++++++|+|||.+++.++..... +....+..... +. +..
T Consensus 214 ~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~-----~~----~~~---- 278 (306)
T TIGR02716 214 P--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL-----GA----GMP---- 278 (306)
T ss_pred C--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH-----Hc----ccc----
Confidence 4 3799999999998864 3678999999999999999998754332 11121221111 00 000
Q ss_pred hhHHHHhccCCHHHHHHHHHHcCceeeEE
Q 025144 214 YLKSSIREFLTGKDLEKLALEIGFSRAKH 242 (257)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 242 (257)
.......+.+++.++|+++||+.++.
T Consensus 279 ---~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 279 ---FSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred ---cccccCCCHHHHHHHHHHcCCCeeEe
Confidence 01112445799999999999997764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=139.33 Aligned_cols=147 Identities=19% Similarity=0.192 Sum_probs=116.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
+|||||||+|..+..+++.+ ++.+++++|+|+++++.+++++...+.. .++.++..|....+.+ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~--~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ--GRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC--cceEEEecccccCCCC-CCCCEeehHHHH
Confidence 79999999999999999885 5679999999999999999988654433 5789999999765554 689999999999
Q ss_pred cCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHH
Q 025144 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 231 (257)
Q Consensus 152 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (257)
+|+.+...++++++++|||||.+++.++......... .. . ....+.+..++.++
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------~~--~---------~~~~~~s~~~~~~~ 131 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE---------------HE--E---------TTSYLVTREEWAEL 131 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc---------------cc--c---------cccccCCHHHHHHH
Confidence 9999999999999999999999998876432100000 00 0 00114588999999
Q ss_pred HHHcCceeeEEeeecCc
Q 025144 232 ALEIGFSRAKHYELSGG 248 (257)
Q Consensus 232 l~~~Gf~~~~~~~~~~g 248 (257)
++++||++++..++...
T Consensus 132 l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 132 LARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHCCCeEEEeEECcHh
Confidence 99999999988776443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=136.89 Aligned_cols=197 Identities=21% Similarity=0.233 Sum_probs=131.6
Q ss_pred hhHHHHhhh--------hhhhhhhhhhhhh--hhhHHHHHHHHHhhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCce
Q 025144 29 SERQELFSR--------IAPVYDNLNDLLS--FGQHRIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGK 96 (257)
Q Consensus 29 ~~~~~~y~~--------~a~~y~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~ 96 (257)
++++.+|+. +...|+......+ ....+.+++.+..++. ..++.+|||+|||+|.++..+++. +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~ 79 (219)
T TIGR02021 3 EQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAI 79 (219)
T ss_pred cHHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCE
Confidence 455666665 3444444433221 1234456666666665 567889999999999999999875 469
Q ss_pred EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEE
Q 025144 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 97 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l 174 (257)
++|+|+|++|++.+++++...... .++.+.+.|+.+.+ ++||+|++..++++++ +....++++.+++++++.+
T Consensus 80 v~gvD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i 154 (219)
T TIGR02021 80 VKAVDISEQMVQMARNRAQGRDVA--GNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154 (219)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCC--CceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999987543321 37899999998764 7899999999988874 4678899999988866555
Q ss_pred EEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeE
Q 025144 175 SVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 251 (257)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~ 251 (257)
.+. . ...... ...++.... .... ......+++.+++.++++++||+++.......|.+.
T Consensus 155 ~~~---~-~~~~~~-~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 155 TFA---P-KTAWLA-FLKMIGELF--------PGSS-----RATSAYLHPMTDLERALGELGWKIVREGLVSTGFYN 213 (219)
T ss_pred EEC---C-CchHHH-HHHHHHhhC--------cCcc-----cccceEEecHHHHHHHHHHcCceeeeeecccccchh
Confidence 432 1 111111 111111100 0000 001123568999999999999999998877666543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=136.08 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=109.3
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+. .++.+...|+.+.+++ +
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCcC-C
Confidence 344445556789999999999999999976 57999999999999999987755432 4688899999877664 6
Q ss_pred cccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 141 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+||+|++..++|+++ +...+++++.++|+|||.+++.....+...... . + .
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-------~----------~----~------ 147 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-------V----------G----F------ 147 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-------C----------C----C------
Confidence 799999999998875 578999999999999999766543322211000 0 0 0
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEe
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
...++.+++.+.++ ||+++...
T Consensus 148 -~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 148 -PFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred -CCccCHHHHHHHhC--CCeEEEee
Confidence 02357788988887 99988763
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=124.67 Aligned_cols=143 Identities=23% Similarity=0.283 Sum_probs=111.7
Q ss_pred hHHHHHHHHHhhh----CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE
Q 025144 53 QHRIWKRMAVSWS----GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128 (257)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 128 (257)
.++.|.+.+...+ ..+++.+|||+|||+|..+..++... +..+|+++|+|+.|++.++++.+..+. .+++++
T Consensus 25 ~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~ 100 (187)
T PRK00107 25 PEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL---KNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEE
Confidence 3445555553322 23447899999999999999998864 678999999999999999998876553 469999
Q ss_pred EccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCc
Q 025144 129 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208 (257)
Q Consensus 129 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
++|+.+.+. .++||+|++.. +.++..+++.+++.|||||.+++.....
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~--------------------------- 148 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD--------------------------- 148 (187)
T ss_pred eccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------------------------
Confidence 999988766 67899999865 3567889999999999999998775221
Q ss_pred hhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
...++.++.+..|+.+...+++.
T Consensus 149 ---------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 149 ---------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred ---------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 23567778888899988877663
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=128.39 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=125.7
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.++..+...+..+|.|+|||+|..+..|++++ |++.++|+|.|++|++.|++++ +++++..+|+.++.. +
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~aDl~~w~p-~ 90 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL--------PDATFEEADLRTWKP-E 90 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC--------CCCceecccHhhcCC-C
Confidence 35556677778899999999999999999997 8999999999999999998887 899999999999763 4
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
...|+++++.+|++++|-..+|.++...|.|||.|.+..+..-..+....+.....+. ++...++... ..-
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~---p~~~~l~~~~------~~r 161 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA---PFAQELGGRG------LTR 161 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcC---chhhhhCccc------ccc
Confidence 6799999999999999999999999999999999988765544433333332222111 1111111000 001
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
....++...-++|...+-++--+++.+
T Consensus 162 ~~v~s~a~Yy~lLa~~~~rvDiW~T~Y 188 (257)
T COG4106 162 APLPSPAAYYELLAPLACRVDIWHTTY 188 (257)
T ss_pred CCCCCHHHHHHHhCcccceeeeeeeec
Confidence 235688888899988887765555443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=132.03 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=106.2
Q ss_pred hhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
..+...++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++....+ -++.+...|....+++ ++|
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-CCC
Confidence 3444555679999999999999999975 5799999999999999988765432 2467777887665554 679
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|+|++..++++++ +...++++++++|||||.+++.++......... . ...
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-------------------~---------~~~ 147 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-------------------M---------PFS 147 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-------------------C---------CcC
Confidence 9999999999884 567899999999999999777654332210000 0 001
Q ss_pred ccCCHHHHHHHHHHcCceeeEEe
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
..++..++.+.+. +|+++.+.
T Consensus 148 ~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 148 FTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred ccCCHHHHHHHhC--CCeEEEee
Confidence 2458899999886 68888766
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=129.87 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=128.7
Q ss_pred HHHHhhhhhhhhh-hhhhhhhh-hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 31 RQELFSRIAPVYD-NLNDLLSF-GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 31 ~~~~y~~~a~~y~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
-.+.|+.+++.|. ........ .....-...+....+..++.+|||+|||+|..+..+++. +.+++++|+++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~ 84 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIE 84 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHH
Confidence 3456777776443 32211111 111122234444455667889999999999999888865 468999999999999
Q ss_pred HHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 109 MASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
.++++....+ ..+.+...|..+.+ ...++||+|++..++++.+++..+++.+.+.|+|||.+++..+........
T Consensus 85 ~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~ 160 (233)
T PRK05134 85 VARLHALESG----LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYL 160 (233)
T ss_pred HHHHHHHHcC----CceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHH
Confidence 9988865432 35677788877654 345789999999999999999999999999999999998876543221111
Q ss_pred HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 188 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
. .............. ......++++.+++.++++++||++++...
T Consensus 161 ~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 161 L---AIVGAEYVLRMLPK---------GTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred H---HHhhHHHHhhhcCc---------ccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 0 00000000000000 001123567899999999999999987754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=137.15 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=120.7
Q ss_pred chhHHHHhhhh-----hhhhhhhhhhhh-----hhhHHHHHHHHHhhhCC---CCCCeEEEecCCCChhHHHHHHHhCCC
Q 025144 28 SSERQELFSRI-----APVYDNLNDLLS-----FGQHRIWKRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQ 94 (257)
Q Consensus 28 ~~~~~~~y~~~-----a~~y~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~ 94 (257)
.+.++++||+. +..|+..+.... ...++.+.+.+..++.. .++.+|||+|||+|.++..+++. +
T Consensus 90 ~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g 166 (315)
T PLN02585 90 KEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---G 166 (315)
T ss_pred HHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---C
Confidence 57899999975 455665332211 11233444555555532 35679999999999999999975 5
Q ss_pred ceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhcccC
Q 025144 95 GKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKP 170 (257)
Q Consensus 95 ~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~ 170 (257)
.+|+++|+|+.|++.++++.+..... ...++.+...|+.++ +++||+|++..+++|+++ ...+++.+.+ +.+
T Consensus 167 ~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~ 242 (315)
T PLN02585 167 AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAE 242 (315)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcC
Confidence 79999999999999999987543110 013678888887654 478999999999988865 3456666665 455
Q ss_pred CCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 171 GSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 171 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+|.+ +.. .. .......+ ....+ .+.+...... ..+++.++++++|+++||++......
T Consensus 243 g~li-Is~-~p-~~~~~~~l-~~~g~----~~~g~~~~~r---------~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 243 KRLI-ISF-AP-KTLYYDIL-KRIGE----LFPGPSKATR---------AYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred CEEE-EEe-CC-cchHHHHH-HHHHh----hcCCCCcCce---------eeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 5554 432 21 11111111 11110 0001000000 11348999999999999998765543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-19 Score=129.86 Aligned_cols=157 Identities=27% Similarity=0.395 Sum_probs=119.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-CCCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~ 144 (257)
+.|+.+|||+|||.|.+..+|.+. .+.+..|+|++++.+..+.++ .+.++++|+++ + .+++++||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccE
Confidence 467899999999999999999887 478999999999988877664 68899999986 3 388999999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCC--chhhhhhhHHHHhcc
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG--LAEEYQYLKSSIREF 222 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 222 (257)
|+++.+++++..+..+|+++.|+ |...++.-++. ..+...+. ..+.+... ..-.|+|.+....++
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF------g~W~~R~~----l~~~GrmPvt~~lPy~WYdTPNih~ 145 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF------GHWRNRLQ----LLLRGRMPVTKALPYEWYDTPNIHL 145 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecCh------HHHHHHHH----HHhcCCCCCCCCCCCcccCCCCccc
Confidence 99999999999999999988765 54665544331 11111110 01111111 122467777788889
Q ss_pred CCHHHHHHHHHHcCceeeEEeeecCc
Q 025144 223 LTGKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
.|..++++++++.|+++.+...+..+
T Consensus 146 ~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 146 CTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred ccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 99999999999999999998877544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-19 Score=123.22 Aligned_cols=97 Identities=31% Similarity=0.448 Sum_probs=66.1
Q ss_pred EEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEecccc
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGL 151 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l 151 (257)
||+|||+|.++..+++.+ +..+++++|+|+.|++.+++++..... .+......+..+.. ...++||+|++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN---DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC---cceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999999999999995 788999999999999999988866542 23334444433321 122589999999999
Q ss_pred cCcccHHHHHHHHHhcccCCCEE
Q 025144 152 RNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 152 ~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
||++++..+++++++.|||||.|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=135.87 Aligned_cols=139 Identities=16% Similarity=0.085 Sum_probs=105.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ .++.+...|+....+ +++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEE
Confidence 34559999999999999999875 5799999999999999998875543 368888888877555 578999999
Q ss_pred cccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 148 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 148 ~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
..++++++ +...+++++.++|+|||.+++........... + . .....++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~-------------~--------~-------p~~~~~~~ 242 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC-------------P--------M-------PFSFTFKE 242 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC-------------C--------C-------CCCcccCH
Confidence 99999885 57889999999999999977654332221100 0 0 00124688
Q ss_pred HHHHHHHHHcCceeeEEee
Q 025144 226 KDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~ 244 (257)
.++++.+. +|++++..+
T Consensus 243 ~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 243 GELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred HHHHHHhC--CCEEEEEec
Confidence 99999986 599888753
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=118.19 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=83.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
++.+|||+|||+|..+..++.. .+..+|+++|.|+.|++.++++.+..+. .+++++++|+.++. ..++||+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc-ccCCccEEEeh
Confidence 4779999999999999998876 4667999999999999999888765432 47999999998864 35789999986
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
. + .+....++.++++|+|||.+++.
T Consensus 117 ~-~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 117 A-L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h-h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 5 3 45667888899999999999875
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=122.49 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=104.1
Q ss_pred hhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
..+...++.++||+|||.|+.+.+|+++ +.+|+++|.|+..++.+++..+..+ -.++....|+.+..++ +.|
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TTE
T ss_pred HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CCc
Confidence 3345556779999999999999999987 7899999999999999887765543 4689999999887765 679
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|+|++..++++++ ..+.+++++.+.++|||.+++..+......... . ...
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~-------------~---------------~~~ 147 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP-------------S---------------PFP 147 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S-------------S-----------------S
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC-------------C---------------CCC
Confidence 9999988888885 467899999999999999888655332211000 0 001
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeeecC
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
..+.+.++.+.+. ||+++...+..+
T Consensus 148 f~~~~~EL~~~y~--dW~il~y~E~~g 172 (192)
T PF03848_consen 148 FLLKPGELREYYA--DWEILKYNEDVG 172 (192)
T ss_dssp --B-TTHHHHHTT--TSEEEEEEEEEE
T ss_pred cccCHHHHHHHhC--CCeEEEEEcccc
Confidence 2346788888875 899888766543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-17 Score=130.29 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCC----cc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDC----FF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~----~~ 142 (257)
.++.+|||+|||+|..+..+++.+..+.+|+++|+|++|++.+++++....+. .++..+++|+.+. +.+.. ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccCCe
Confidence 45679999999999999999988633579999999999999999887543211 3567789999763 33322 23
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.++++..++++++ +...+|++++++|+|||.+++..
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3444556777775 46778999999999999997643
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=122.84 Aligned_cols=159 Identities=22% Similarity=0.263 Sum_probs=113.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 147 (257)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .++.+...|+.+.+.. +++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhcCCCCCccEEEe
Confidence 4679999999999999988765 35799999999999999988754321 2588888888776533 378999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
.+++++..++..+++.+.++|+|||.+++...+........ .............. . .....++++..+
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~ 186 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLL---AIVGAEYILRIVPK--G-------THDWEKFIKPSE 186 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHH---HHHhhhhhhhcCCC--C-------cCChhhcCCHHH
Confidence 99999999999999999999999999988766543211111 11100000000000 0 001124668899
Q ss_pred HHHHHHHcCceeeEEeee
Q 025144 228 LEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~ 245 (257)
+.++++++||++++....
T Consensus 187 l~~~l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 187 LTSWLESAGLRVKDVKGL 204 (224)
T ss_pred HHHHHHHcCCeeeeeeeE
Confidence 999999999999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-18 Score=115.29 Aligned_cols=96 Identities=33% Similarity=0.606 Sum_probs=79.6
Q ss_pred EEEecCCCChhHHHHHHHh--CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec-c
Q 025144 73 VLDVCCGSGDLSFLLSEQV--GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-Y 149 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~ 149 (257)
|||+|||+|..+..+.+.+ ++..+++++|+|++|++.++++....+ .++++++.|+.+++..+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999886 334799999999999999999986643 48999999999988777899999995 4
Q ss_pred cccCcc--cHHHHHHHHHhcccCCC
Q 025144 150 GLRNVV--DKRKALEESFRVLKPGS 172 (257)
Q Consensus 150 ~l~~~~--~~~~~l~~~~~~Lk~gG 172 (257)
+++|++ +...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 488886 47889999999999998
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=124.85 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=104.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++....+.. .++.+..+|+.. .+++||+|+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLA--GNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCc--cCcEEEEcCchh---ccCCcCEEE
Confidence 356779999999999999999876 457999999999999999987654322 478899988543 357899999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCC
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 224 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (257)
+..+++|++ +....++++.+.+++++.+ ... .. ..... ...... . .+.... .......++
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i-~~~-~~--~~~~~-~~~~l~-~-------~~~~~~-----~~~~~~~~~ 194 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIF-TFA-PY--TPLLA-LLHWIG-G-------LFPGPS-----RTTRIYPHR 194 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEE-EEC-Cc--cHHHH-HHHHhc-c-------ccCCcc-----CCCCccccC
Confidence 999998875 4567788888876544333 221 11 11111 111110 0 000000 000113568
Q ss_pred HHHHHHHHHHcCceeeEEeeecCc
Q 025144 225 GKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 225 ~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
..++.++++++||++.+......+
T Consensus 195 ~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 195 EKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred HHHHHHHHHHCCCceEeeeeccch
Confidence 899999999999999998876554
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=139.95 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=94.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF 141 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 141 (257)
.....++.+|||+|||+|..+..+++.+ ++.+++|+|+|+.|++.++++....+ .++.++++|..+++ +++++
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCC
Confidence 3344567899999999999999998875 77899999999999999998764322 46788999998876 67789
Q ss_pred ccEEEecccccCc-------------ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 142 FDAITMGYGLRNV-------------VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 142 ~D~v~~~~~l~~~-------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
||+|+++.++|++ .++..++++++++|||||.+++.+...
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 9999999888864 246889999999999999999987543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-16 Score=119.87 Aligned_cols=105 Identities=21% Similarity=0.141 Sum_probs=81.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSD 139 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 139 (257)
.+.+.++.+|||+|||+|..+..+++.++ ..+|+++|+++.|++.+.++.+.. .++.++.+|..+. ++ .
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~ 139 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-V 139 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-c
Confidence 46778899999999999999999998864 568999999999999877665432 5789999998752 12 3
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++||+|++.... ......++++++++|||||.+++.
T Consensus 140 ~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 569999864321 112245689999999999999884
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=117.36 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=107.9
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+..+..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .+++++.+|...
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~ 92 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI 92 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh
Confidence 3445556666777788899999999999999999874 678999999999999999988765432 468899888753
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
.. .++||+|++..... ....+++.+.+.|+|||.+++.....
T Consensus 93 -~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------------- 134 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL--------------------------------- 134 (187)
T ss_pred -hc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH---------------------------------
Confidence 23 36799999876544 34678899999999999997754221
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+..++.++++++||+.++....
T Consensus 135 --------~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 135 --------ENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred --------hhHHHHHHHHHHCCCCcceEEEE
Confidence 13357778999999987765443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=112.87 Aligned_cols=146 Identities=20% Similarity=0.291 Sum_probs=104.6
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...++...-.++||+|||.|.++..|+.+. .+++++|+|+..++.|++++... +++.+.+.|+.+.. |++
T Consensus 35 l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~~-P~~ 105 (201)
T PF05401_consen 35 LLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-----PHVEWIQADVPEFW-PEG 105 (201)
T ss_dssp HHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS
T ss_pred HHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCCC-CCC
Confidence 3334566666799999999999999999773 58999999999999999998754 69999999998753 578
Q ss_pred cccEEEecccccCccc---HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 141 FFDAITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
+||+|+++.+++++.+ ....+.++...|+|||.+++..+.. ..-.
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd------~~c~-------------------------- 153 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD------ANCR-------------------------- 153 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H------HHHH--------------------------
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC------Cccc--------------------------
Confidence 9999999999999964 5678999999999999999877531 0111
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeeecCc
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
.+.+.+..+.+.++|.+. |+.++..+..++
T Consensus 154 ~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~ 183 (201)
T PF05401_consen 154 RWGHAAGAETVLEMLQEH-LTEVERVECRGG 183 (201)
T ss_dssp HTT-S--HHHHHHHHHHH-SEEEEEEEEE-S
T ss_pred ccCcccchHHHHHHHHHH-hhheeEEEEcCC
Confidence 112345678888888766 777776665444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-16 Score=123.02 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=111.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+..-.+++|||||||.|..+..++.. + -..|+|+|+++-...+.+-..+-.+.. ..+......+++++. .+.||
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~-G-A~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR-G-AKSVIGIDPSPLFYLQFEAIKHFLGQD--PPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc-C-CCEEEEECCChHHHHHHHHHHHHhCCC--ccEEEcCcchhhccc-cCCcC
Confidence 333456889999999999999999877 3 247999999887766644322212111 234455567777776 68899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+|++..+|.|..+|...|..+++.|++||.+++-+...+.... ....|....-++...| -..
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~----------~~L~P~~rYa~m~nv~--------FiP 246 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN----------TVLVPEDRYAKMRNVW--------FIP 246 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc----------eEEccCCcccCCCceE--------EeC
Confidence 9999999999999999999999999999999887654333211 1111211111121111 134
Q ss_pred CHHHHHHHHHHcCceeeEEeeec
Q 025144 224 TGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+...+..+|+++||+.+++.+..
T Consensus 247 s~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 247 SVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred CHHHHHHHHHHcCCceEEEecCc
Confidence 89999999999999999876543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=119.02 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=86.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++.+ ++.+++|+|+|++|++.|+++. +++.+.++|+.+ ++++++||+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEE
Confidence 4567799999999999999998874 5679999999999999998865 467888999888 77788999999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+..+++|++ +....++++++++ ++.+++.+...+
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999999985 4677888888887 467777776443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=113.51 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=102.4
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
+...++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++....+ .++.+..+|..+.. .++||+
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~fD~ 85 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RGKFDV 85 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CCcccE
Confidence 334456789999999999999998762 389999999999999999876433 36788899987643 458999
Q ss_pred EEecccccCccc---------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh
Q 025144 145 ITMGYGLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203 (257)
Q Consensus 145 v~~~~~l~~~~~---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------------------- 144 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------------------- 144 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------------
Confidence 999988765542 35679999999999999988763321
Q ss_pred ccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...++.+.+++.||+.......
T Consensus 145 --------------------~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 145 --------------------GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred --------------------ChHHHHHHHHhCCCeEEEEEEe
Confidence 2467888999999987766554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=137.29 Aligned_cols=152 Identities=21% Similarity=0.202 Sum_probs=112.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LP 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~ 136 (257)
..+...+...++.+|||+|||+|..+..+++. ..+++++|+++.|++.+++.... .+++.++++|+.+ ++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLN 98 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccC
Confidence 44555565566779999999999999999987 35899999999999887653221 1578999999964 45
Q ss_pred CCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 137 FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
+++++||+|++..+++++++ ...++++++++|||||.+++.+........... .
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---~--------------------- 154 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---K--------------------- 154 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---c---------------------
Confidence 67789999999999999976 578999999999999999887754322100000 0
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
.....+.....+.+++.++||.......
T Consensus 155 --~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (475)
T PLN02336 155 --NNPTHYREPRFYTKVFKECHTRDEDGNS 182 (475)
T ss_pred --CCCCeecChHHHHHHHHHheeccCCCCE
Confidence 0001234677899999999998765443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.7e-16 Score=128.04 Aligned_cols=112 Identities=27% Similarity=0.272 Sum_probs=93.7
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+.+.++.+|||||||+|.++..+++.+ +.+|+++|+|+++++.++++... .++.+...|..++ +
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence 34455677888999999999999999999874 57999999999999999988742 2577888887765 4
Q ss_pred CcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 140 CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
++||+|++..+++|+. +....++++.++|||||.+++.++..+
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 7899999999999984 467899999999999999998876543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=119.56 Aligned_cols=156 Identities=22% Similarity=0.349 Sum_probs=105.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v 145 (257)
+++.+|||+|||+|.++..+++.. +..++++|+|+++++.+++ .++.++++|+.+ + ++++++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 466799999999999999887663 5678999999999988754 256788888865 3 3567889999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
+++.+++|++++..+++++.+.++ .+++..++ .............. ..+... ...+.+......++++.
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~---~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~s~ 148 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGR---HAIVSFPN---FGYWRVRWSILTKG-RMPVTG----ELPYDWYNTPNIHFCTI 148 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCC---hhHHHHHHHHHhCC-ccccCC----CCCccccCCCCcccCcH
Confidence 999999999999999999887755 33333221 11111111111110 011100 00112222223457899
Q ss_pred HHHHHHHHHcCceeeEEeeec
Q 025144 226 KDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+++.++++++||++++...+.
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEec
Confidence 999999999999999877763
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-17 Score=120.93 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=129.7
Q ss_pred CCchhHHHHhhhhhhhhhhh-hhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 26 RCSSERQELFSRIAPVYDNL-NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
.++.-+...||..++.+|.+ -+...+.....+++++.. ....+-.++||+|||||.....+.... ..++|+|+|.
T Consensus 82 pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~ 157 (287)
T COG4976 82 PPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISE 157 (287)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhH
Confidence 44578999999999999876 334444455555555443 334446799999999999998887763 5899999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
.|++.|.++-- --.+.+.+...+ ...++.||+|++..++.++-+++.++--....|+|||.+.+..-..+
T Consensus 158 nMl~kA~eKg~--------YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 158 NMLAKAHEKGL--------YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred HHHHHHHhccc--------hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence 99999988621 011223333221 13457899999999999999999999999999999999988765443
Q ss_pred CchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc-cCCHHHHHHHHHHcCceeeEEeee
Q 025144 183 TQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE-FLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...-+. -....+ -.+...++++++..||.++.+...
T Consensus 230 ~~~~f~---------------------------l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 230 DDGGFV---------------------------LGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred CCCCee---------------------------cchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 331100 000111 236788999999999999987654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-16 Score=118.22 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=91.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+...++.+|||+|||+|..+..+++..++..+|+++|+++++++.+++++...+.. .+++++.+|..+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~--~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW--GVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEECCcccCC
Confidence 3445556667778889999999999999999988655679999999999999999888654422 35899999998754
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++||+|++..++.+++ ..+.+.|+|||.+++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 4457899999998877664 36788999999997643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=118.76 Aligned_cols=106 Identities=22% Similarity=0.155 Sum_probs=81.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCCCCc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 141 (257)
+.+.++.+|||+|||+|.++.++++.+++...|+++|+++.|++...+..+.. .|+.++..|+... ..+.++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCC
Confidence 46788899999999999999999999866679999999998665554443321 5889999998642 223467
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+|++... ..++...++.++++.|||||.+++.
T Consensus 203 vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 999998764 2334456677899999999999883
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=119.01 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred CCCCeEEEecCCCChhHH-HHHHHhCCCceEEEEeCChhHHHHHHhhhhh-hhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.++.+|+|||||.|.++. .+++...|+.+++++|.++++++.|++.++. .+.. .+++|..+|+.+.....+.||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECchhhcccccCCcCEE
Confidence 377899999999885544 3443445788999999999999999998853 3332 67999999998864334789999
Q ss_pred EecccccCc--ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++. +++++ ++..++++++++.|+|||.+++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 88887 589999999999999999998764
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=116.52 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh---------hhccCCCeeEEEccCCCCCCC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------SKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------~~~~~~~~~~~~~d~~~~~~~ 138 (257)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+....... ......+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 46679999999999999999976 789999999999999864321100 000014789999999987632
Q ss_pred -CCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 -DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+.||.|+-..++++++ .....++.+.++|||||.+++..+..
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 36799999888888885 35778999999999999887776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=107.48 Aligned_cols=114 Identities=26% Similarity=0.331 Sum_probs=90.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LP 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~ 136 (257)
+..+...+...++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++.+..+. .++.++..|... .+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccCh
Confidence 3445555566677899999999999999999885 557999999999999999988765432 478888888764 22
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++||+|++..... ....+++.+++.|+|||.+++..
T Consensus 84 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2346899999976544 34688999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=114.14 Aligned_cols=116 Identities=26% Similarity=0.438 Sum_probs=92.4
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
.+...+..+.+.++.+|||+|||+|.++..+++..++..+++++|.++.+++.++++++..+.. .++.++.+|..+.
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~--~~v~~~~~d~~~~l 105 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL--NNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CCeEEEEechhhhH
Confidence 3444555677888999999999999999999887656679999999999999999988765422 5788999998763
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+...+.||+|++... ..++..+++.+.+.|+|||.+++.
T Consensus 106 ~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 106 FTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred hhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEE
Confidence 222467999998652 346788999999999999999763
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=119.20 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCC--CCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLP--FSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~v 145 (257)
++.+|||+|||+|..+..+++.. +..+++++|+|+++++.++++....+. .++.++++|+ ..++ +++++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHHHHHHHHcCccccceE
Confidence 56799999999999999998874 667999999999999999988765432 5799999999 6554 567889999
Q ss_pred EecccccCcc--------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~--------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+.. ....++++++++|||||.+++..
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 9876554322 14778999999999999998764
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=117.85 Aligned_cols=147 Identities=22% Similarity=0.308 Sum_probs=109.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+...+. ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++.++++|+.+ .+
T Consensus 77 ~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 77 VEAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-cC
Confidence 333444333 334589999999999999999874 667999999999999999998765432 468999999976 34
Q ss_pred CCCcccEEEecccccCccc--------------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHH
Q 025144 138 SDCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 191 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 191 (257)
++++||+|+++..+....+ ...+++++.+.|+|||.+++.. .
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~----------- 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-G----------- 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-C-----------
Confidence 5688999999755442111 2367889999999999987642 1
Q ss_pred HHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEE
Q 025144 192 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252 (257)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~ 252 (257)
+.+.+++.++++++||+.++.+....+..++
T Consensus 219 ------------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~ 249 (251)
T TIGR03534 219 ------------------------------YDQGEAVRALFEAAGFADVETRKDLAGKDRV 249 (251)
T ss_pred ------------------------------ccHHHHHHHHHHhCCCCceEEEeCCCCCcCe
Confidence 1134678889999999988877665555544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-15 Score=120.65 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=113.1
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+.+.+...+ .++.+|||+|||+|.++..++... +..+++++|+|+++++.++++.+..+ .++.++++|+.+
T Consensus 239 E~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e 311 (423)
T PRK14966 239 EHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFD 311 (423)
T ss_pred HHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhc
Confidence 34444443332 345699999999999999998774 67899999999999999999986543 478999999866
Q ss_pred CCC-CCCcccEEEecccccCc---------------------cc----HHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 135 LPF-SDCFFDAITMGYGLRNV---------------------VD----KRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 135 ~~~-~~~~~D~v~~~~~l~~~---------------------~~----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
... ..++||+|+++...... ++ ..++++.+.+.|+|||.+++. ..
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG-------- 382 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HG-------- 382 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-EC--------
Confidence 432 24579999997653211 01 235677777899999987643 21
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
....+.+.+++++.||..++......|..+++++++
T Consensus 383 ---------------------------------~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 383 ---------------------------------FDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ---------------------------------ccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 123468889999999998888888888888887753
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=116.07 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+.+.++.+|||||||+|..+..+++..++..+|+++|+++++++.++++++..+. .++.++.+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence 3445556667788899999999999999999998865567999999999999999999875542 5799999998875
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+.++||+|++......++ ..+.+.|||||.+++.
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 55567899999987765442 3567789999998775
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=121.25 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=86.7
Q ss_pred CCCCeEEEecCCCCh----hHHHHHHHhCC----CceEEEEeCChhHHHHHHhhhhhh------h---------------
Q 025144 68 KTGDNVLDVCCGSGD----LSFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDLV------S--------------- 118 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~----~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~------~--------------- 118 (257)
.++.+|+|+|||+|. ++..+++..+. +.+|+|+|+|+.|++.|++..-.. +
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999997 45555555421 468999999999999999864110 0
Q ss_pred ---hccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 119 ---KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 119 ---~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....++.+.+.|+.+.+++.++||+|+|.+++++++ +..+++++++++|+|||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0011378999999998777678999999999999996 45689999999999999998754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=116.94 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=114.7
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+.+.+.......++.+|||+|||+|..+..++... +..+++++|+|+.+++.++++... .. ..++.++.+|+.+
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~-~~--~~~i~~~~~d~~~ 169 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH-GL--GARVEFLQGDWFE 169 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-CC--CCcEEEEEccccC
Confidence 4444444444455667899999999999999999885 678999999999999999998761 11 1579999999865
Q ss_pred CCCCCCcccEEEecccccCc--------------------------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 135 LPFSDCFFDAITMGYGLRNV--------------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
. .++++||+|+++...... .....+++++.+.|+|||.+++.. ..
T Consensus 170 ~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~------- 240 (275)
T PRK09328 170 P-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY------- 240 (275)
T ss_pred c-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-------
Confidence 3 235789999986443211 113567888889999999997632 11
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...+++.+++++.||..++......|..++++++|
T Consensus 241 ----------------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 241 ----------------------------------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred ----------------------------------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 12356888999999988877666677777777764
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=108.94 Aligned_cols=145 Identities=24% Similarity=0.307 Sum_probs=105.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+.. ..++.++..|..+. +++++||+|+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~~d~vi 95 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEP-FRGDKFDVIL 95 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccccc-ccccCceEEE
Confidence 356779999999999999999876 479999999999999998887554321 01288888988763 3455899999
Q ss_pred ecccccCc---------------------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhcc
Q 025144 147 MGYGLRNV---------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205 (257)
Q Consensus 147 ~~~~l~~~---------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (257)
++..+... .....+++++.++|||||.+++....
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------- 150 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------- 150 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-------------------------
Confidence 87654331 11456799999999999998765421
Q ss_pred CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee--ecCceeEEEeeeC
Q 025144 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE--LSGGLMGNLVATR 257 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~g~~~~~~~~k 257 (257)
....+++.++++++||++..... ...+...+++++|
T Consensus 151 ----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 151 ----------------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ----------------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 11335778899999998776543 3444555565554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=112.05 Aligned_cols=115 Identities=30% Similarity=0.459 Sum_probs=90.0
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
+.+...+...++.+|||+|||+|..+..+++. .+..+++++|+++.+++.++++++..+. .+++++..|..+. .+
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-~~ 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-LP 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-CC
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-cc
Confidence 34444443336779999999999999999988 4677899999999999999999876553 2389999998773 34
Q ss_pred CCcccEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++||+|+++..++.-.+ ...+++...+.|+|||.++++.
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 689999999988775543 5788999999999999997654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-15 Score=114.02 Aligned_cols=112 Identities=22% Similarity=0.206 Sum_probs=90.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+.+.++.+|||+|||+|..+..+++..++..+|+++|+++++++.|+++++..+. .++.++.+|..+..
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCeEEEECCcccCC
Confidence 344566667788899999999999999999998865456799999999999999999876543 57999999998754
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...++||+|++.....++ ...+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 445689999988765544 34578889999998775
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=123.01 Aligned_cols=124 Identities=16% Similarity=0.192 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
.-+.-.+.++..+....+.+|||+|||+|.++..+++.. |..+++++|.|+.+++.++++++........++++...|.
T Consensus 212 ~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 212 GLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred CcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 334445667777766656799999999999999999884 7889999999999999999988654322113688888888
Q ss_pred CCCCCCCCcccEEEecccccCcc-----cHHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDLPFSDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+. .++++||+|+++..+|.-. ...++++.++++|+|||.++++.
T Consensus 291 l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 291 LSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 653 3446899999988877542 24678999999999999998874
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=115.71 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=112.0
Q ss_pred HHHHHHHHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
+.+...++..+ ...+..+|||+|||+|.++..++... ++.+++++|+|+++++.++++....+.. .++.++++|..
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~--~~v~~~~~d~~ 175 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLE--HRVEFIQSNLF 175 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchh
Confidence 34444444333 22333699999999999999999884 6679999999999999999987654432 35999999987
Q ss_pred CCCCCCCcccEEEecccc-------------cCcc------------cHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 134 DLPFSDCFFDAITMGYGL-------------RNVV------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l-------------~~~~------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
+ +++.++||+|+++... .+-+ ....++.++.+.|+|||.+++-. ..
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~-g~------- 246 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI-GN------- 246 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE-Cc-------
Confidence 6 3344589999986321 1111 24567888999999999986543 21
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHH-HcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....+.+++. +.||..++......|..+++++++
T Consensus 247 ----------------------------------~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 ----------------------------------WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ----------------------------------cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 12346667777 468988887777788888887753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-16 Score=115.23 Aligned_cols=173 Identities=18% Similarity=0.230 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhhCCCCCC--eEEEecCCCChhHHHHHHHhCCC--ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE
Q 025144 54 HRIWKRMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (257)
...+.+.+-.+....... +|||+|||.|.....+++.. +. ..+++.|.|+.+++..+++..-.. .++....
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv 128 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFV 128 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch----hhhcccc
Confidence 444444444454443333 89999999999999999874 44 799999999999999988754332 3555555
Q ss_pred ccCCCC----CCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh
Q 025144 130 GDALDL----PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203 (257)
Q Consensus 130 ~d~~~~----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
.|+... +++.+++|+|++.++|..++ .....+.+++++|||||.|++-|+...+......- . .....
T Consensus 129 ~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~----~-~~~i~-- 201 (264)
T KOG2361|consen 129 WDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK----K-GQCIS-- 201 (264)
T ss_pred eeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc----C-Cceee--
Confidence 565542 35678999999999999885 47889999999999999999998876553322111 0 00000
Q ss_pred ccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEe
Q 025144 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
. ..|-.-.+....+++.+++++++.++||..++..
T Consensus 202 ~-----nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 202 E-----NFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred c-----ceEEccCCceeeeccHHHHHHHHHhcccchhccc
Confidence 0 0011111111236799999999999999877643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-14 Score=110.76 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=150.1
Q ss_pred cCccceeeeeeccCC-chhHHHHhhhh---hhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHH
Q 025144 13 TSRSQFRFSYGRVRC-SSERQELFSRI---APVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLS 88 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~y~~~---a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~ 88 (257)
-+++.++++|...++ ...+-++-|+. +..|.-.... .....+..++.+..+.....+-+||||+||.|+.....+
T Consensus 76 DSGstLDYVYrN~p~G~~~~GrliDr~yLnaiGWrGIR~R-k~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal 154 (311)
T PF12147_consen 76 DSGSTLDYVYRNQPQGKGPLGRLIDRNYLNAIGWRGIRQR-KVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDAL 154 (311)
T ss_pred CCcchHhHHhcCCCCCcchHHHHHHHhhhcccchHHHHHH-HHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHH
Confidence 346666777777644 34444444431 1222222110 001133333333334344556799999999999999998
Q ss_pred HHhCC-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEEecccccCccc---HHHHH
Q 025144 89 EQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITMGYGLRNVVD---KRKAL 161 (257)
Q Consensus 89 ~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~---~~~~l 161 (257)
+..+. ..++...|+|+..++..++.+++.+.. .-++|.++|+.+.. -.+...|+++++..+..++| ....+
T Consensus 155 ~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~--~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl 232 (311)
T PF12147_consen 155 EKHPERPDSILLRDYSPINVEKGRALIAERGLE--DIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSL 232 (311)
T ss_pred HhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc--cceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHH
Confidence 88532 268999999999999999998876653 23499999998742 22345799999999999987 45679
Q ss_pred HHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 162 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 162 ~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
..+.+++.|||.++.....+... ...+...+. .+..+ ...+++..+..++.++.+++||+.+.
T Consensus 233 ~gl~~al~pgG~lIyTgQPwHPQ--le~IAr~Lt----sHr~g-----------~~WvMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 233 AGLARALEPGGYLIYTGQPWHPQ--LEMIARVLT----SHRDG-----------KAWVMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred HHHHHHhCCCcEEEEcCCCCCcc--hHHHHHHHh----cccCC-----------CceEEEecCHHHHHHHHHHcCCchhh
Confidence 99999999999998765222111 111111111 11110 01234677999999999999999998
Q ss_pred EeeecCceeEEEeeeC
Q 025144 242 HYELSGGLMGNLVATR 257 (257)
Q Consensus 242 ~~~~~~g~~~~~~~~k 257 (257)
..-...|++++.+|+|
T Consensus 296 q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 296 QRIDEWGIFTVSLARR 311 (311)
T ss_pred heeccCCceEEEeecC
Confidence 8888899999999987
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=119.49 Aligned_cols=98 Identities=29% Similarity=0.445 Sum_probs=81.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC--CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGS--QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+..+|||+|||+|.++..+++.++. ..+++|+|+|+.|++.|+++. +++.+..+|..++++++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEeecccCCCcCCceeEEE
Confidence 4568999999999999999887532 237999999999999998764 578999999999888889999999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+.+.. ..+++++++|||||.+++..+..
T Consensus 157 ~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 157 RIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 86541 23578999999999998876543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=111.79 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=86.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh------h---hccCCCeeEEEccCCCCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV------S---KACYKNIEWVEGDALDLP 136 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~------~---~~~~~~~~~~~~d~~~~~ 136 (257)
...++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+....... + .....++++.++|+.+++
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3456679999999999999999976 789999999999999864321100 0 000157899999999875
Q ss_pred CC-CCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 FS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.. .+.||.|+-..++++++ .....+..+.++|+|||.+++..+..
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 32 25799999888888885 46788999999999999866655443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=113.11 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v 145 (257)
...+|||||||+|.++..+++.. |...++++|+++++++.++++....+. .++.++++|+.+++ ++++++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 45699999999999999999884 788999999999999999988765432 58999999997643 455689999
Q ss_pred EecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+... ...+++.++++|||||.+++..
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 99876554432 2578999999999999998765
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=111.98 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=91.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+.......+..+|+|||+|+|.++..+++.+ |+.+++..|. |..++.+++ . ++++++.+|+. -++|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~--------~rv~~~~gd~f-~~~P 157 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-A--------DRVEFVPGDFF-DPLP 157 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-T--------TTEEEEES-TT-TCCS
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-c--------cccccccccHH-hhhc
Confidence 344455566677899999999999999999995 8899999998 888888877 1 79999999999 4555
Q ss_pred CCcccEEEecccccCccc--HHHHHHHHHhcccCC--CEEEEEeecCCCch
Q 025144 139 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPG--SRISVLDFNKSTQP 185 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~g--G~l~~~~~~~~~~~ 185 (257)
. +|++++.++||++++ ...+|+++++.|+|| |.|+|.+...+...
T Consensus 158 ~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 158 V--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp S--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred c--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 4 999999999999964 678899999999999 99999997755543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-14 Score=111.63 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.|+++....+.. .++.++++|+.+. +++++||+|++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~--~~i~~~~~D~~~~-~~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLE--DRVTLIQSDLFAA-LPGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhc-cCCCCccEEEE
Confidence 445699999999999999999884 6779999999999999999998655432 4789999998652 34568999998
Q ss_pred cccccC------c-------c------------cHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRN------V-------V------------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~------~-------~------------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+..... + + ....+++.+.+.|+|||.+++.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 743211 0 0 1256788899999999998653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=117.62 Aligned_cols=117 Identities=27% Similarity=0.287 Sum_probs=93.4
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.+...+.......++.+|||+|||+|.++...+.. +..++|+|+++.|+..++++++..+. .++.+.++|+.++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence 34555566667788889999999999998876643 57999999999999999998876543 3588999999998
Q ss_pred CCCCCcccEEEecccccCc--------cc-HHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNV--------VD-KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~--------~~-~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.++++||+|+++..+... .+ ...+++.+.++|+|||.+++..
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 8777899999997554321 11 4778999999999999997764
|
This family is found exclusively in the Archaea. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=118.38 Aligned_cols=149 Identities=14% Similarity=0.165 Sum_probs=109.6
Q ss_pred CCchhHHHHhhhhhhhhhhh--hhhh-----h-hhhHHHH--HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCc
Q 025144 26 RCSSERQELFSRIAPVYDNL--NDLL-----S-FGQHRIW--KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG 95 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~--~~~~-----~-~~~~~~~--~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~ 95 (257)
++...+++.|+..++.|... .... . ....... ...+...+....+..+||||||+|..+..+++.. |..
T Consensus 69 ~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~ 147 (390)
T PRK14121 69 SKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNK 147 (390)
T ss_pred cchHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCC
Confidence 34577899999999988632 1110 0 0000111 1223344445556799999999999999999994 788
Q ss_pred eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEecccccCcccH------HHHHHHHHhc
Q 025144 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGYGLRNVVDK------RKALEESFRV 167 (257)
Q Consensus 96 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~------~~~l~~~~~~ 167 (257)
.++|+|+++.+++.+.+++...+. .|+.++++|+..+ .++++++|.|++++...|.... ..+++.++++
T Consensus 148 ~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~Rv 224 (390)
T PRK14121 148 LFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRV 224 (390)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHH
Confidence 999999999999999988765443 6899999999754 3678999999997765544322 5789999999
Q ss_pred ccCCCEEEEEe
Q 025144 168 LKPGSRISVLD 178 (257)
Q Consensus 168 Lk~gG~l~~~~ 178 (257)
|+|||.+.+.+
T Consensus 225 LkpGG~l~l~T 235 (390)
T PRK14121 225 LKPGGTLELRT 235 (390)
T ss_pred cCCCcEEEEEE
Confidence 99999998765
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=103.59 Aligned_cols=133 Identities=23% Similarity=0.318 Sum_probs=105.1
Q ss_pred CCCCC-eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
+.... +|||+|||.|.+...|++. +-....+|+|+|+++++.|+...+..+.+ ..|++.+.|+.+..+..++||+|
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~--n~I~f~q~DI~~~~~~~~qfdlv 140 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS--NEIRFQQLDITDPDFLSGQFDLV 140 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC--cceeEEEeeccCCcccccceeEE
Confidence 34444 9999999999999999987 34446999999999999998877655432 34999999999977777889999
Q ss_pred EecccccCcc---c-----HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 146 TMGYGLRNVV---D-----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 146 ~~~~~l~~~~---~-----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
+=-.++..+. + +...+..+.+.|+|||+++|...+
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN------------------------------------- 183 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN------------------------------------- 183 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-------------------------------------
Confidence 8766665541 1 344588899999999999887643
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
++.+++.+.++..||.......
T Consensus 184 -----~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 184 -----FTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred -----ccHHHHHHHHhcCCeEEEEeec
Confidence 4778999999999998776543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-14 Score=112.45 Aligned_cols=132 Identities=26% Similarity=0.328 Sum_probs=93.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++. +. .+++++|+|+.+++.++++....+.. .++.+..++ .+||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~--------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGD--------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCC--------CCcCEEE
Confidence 356789999999999998877654 33 36999999999999999987643211 122222221 2699999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++... +....++.++.++|||||.+++...... ..+
T Consensus 185 ani~~---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------------------~~~ 220 (250)
T PRK00517 185 ANILA---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------------------QAD 220 (250)
T ss_pred EcCcH---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------------------hHH
Confidence 86532 2356788999999999999988653210 236
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
++.+.+++.||++++.... + .|..++++
T Consensus 221 ~v~~~l~~~Gf~~~~~~~~-~-~W~~~~~~ 248 (250)
T PRK00517 221 EVLEAYEEAGFTLDEVLER-G-EWVALVGK 248 (250)
T ss_pred HHHHHHHHCCCEEEEEEEe-C-CEEEEEEE
Confidence 7888999999998877664 3 34444444
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=117.82 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.-.+.++..+......+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++++..+ ....++..|..+
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~ 256 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFS 256 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEccccc
Confidence 3344555555555555689999999999999999884 67799999999999999999886543 235677777765
Q ss_pred CCCCCCcccEEEecccccCc-----ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 LPFSDCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. .+++||+|+++..+|.- .....+++++.+.|||||.++++.
T Consensus 257 ~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 257 D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 3 25789999999988863 346889999999999999998765
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=107.26 Aligned_cols=132 Identities=23% Similarity=0.250 Sum_probs=97.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCC--CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKT--GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
++|..|..|+........ +..+.+..+.++..++ ..-|||||||+|..+..+.+ +++.++|+|+|+.|++.|.
T Consensus 15 Ynd~eA~kYt~nsri~~I--Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~ 89 (270)
T KOG1541|consen 15 YNDTEAPKYTQNSRIVLI--QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAV 89 (270)
T ss_pred echhhhhhccccceeeee--hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHH
Confidence 455788889888766543 4444444555554444 77999999999999988875 4789999999999999998
Q ss_pred hhhhhhhhccCCCeeEEEccCC-CCCCCCCcccEEEecccccCc-------cc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 112 SRQDLVSKACYKNIEWVEGDAL-DLPFSDCFFDAITMGYGLRNV-------VD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~l~~~-------~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.- .-.++.+|+- -+|+++++||.+++...++++ ++ +..++..++..|++|+..++.-
T Consensus 90 ~~e~--------egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 90 EREL--------EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred Hhhh--------hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 7421 1346666765 478999999999987777665 12 3456788999999999987654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=100.16 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=97.9
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+..+-..+..+.+.++.+++|||||||..+..++ ..+|..+++++|-++++++..+++....+. +|+.++.++..+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~ 95 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchH
Confidence 3455666677889999999999999999999999 447899999999999999999999987763 799999999977
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.-....++|.|++... . +.+.+++.+...|||||.+++...
T Consensus 96 ~L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred hhcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEee
Confidence 4222237999999887 3 467899999999999999977543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-14 Score=108.38 Aligned_cols=115 Identities=21% Similarity=0.378 Sum_probs=93.9
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 138 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~ 138 (257)
+..+.......+|||+|||+|..+..++++. +..+++++|+++++.+.|+++++..+.. .++++++.|+.++. ..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~--~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE--ERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch--hceeEehhhHHHhhhccc
Confidence 3345555667899999999999999999985 4589999999999999999998765554 79999999999864 34
Q ss_pred CCcccEEEecccccCcc------------------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVV------------------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~------------------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+||+|+|+-.+.... +.+.+++...+.||+||.+.++.
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 45799999987654331 25778999999999999998764
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-14 Score=106.17 Aligned_cols=146 Identities=19% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
...+.||+|||.|+.+..++-.+ -.+|..+|+.+..++.|++.+.... ..-..+++..+.++.+++++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 35699999999999998775432 3589999999999999998775421 133678888888877666899999999
Q ss_pred ccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 149 YGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 149 ~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
.++.|+. |...+|+++.+.|+|+|.+++-+-....... .+....++ -..+.+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~------------------------~~D~~DsS--vTRs~~ 183 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD------------------------EFDEEDSS--VTRSDE 183 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE------------------------EEETTTTE--EEEEHH
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc------------------------ccCCccCe--eecCHH
Confidence 9999996 5789999999999999999886533322110 00000000 134778
Q ss_pred HHHHHHHHcCceeeEEeee
Q 025144 227 DLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+++++++||++++.....
T Consensus 184 ~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 184 HFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHHHHHHCT-EEEEEEE-
T ss_pred HHHHHHHHcCCEEEEeccc
Confidence 9999999999999986654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=108.42 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 138 (257)
..++.+|||+|||+|.++..+++..++...|+++|+++ | ... +++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~--------~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPI--------VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCC--------CCcEEEecCCCChHHHHHHHHHhC
Confidence 46778999999999999999999876667999999988 2 111 57899999998853 55
Q ss_pred CCcccEEEecccccCccc-----------HHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 139 DCFFDAITMGYGLRNVVD-----------KRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+++||+|++..+.++..+ ...+|+.+.++|||||.+++..+...
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 688999999776655432 14679999999999999988766543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=117.88 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=104.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.+|||+|||+|.++..++..+ +..+++++|+|+.+++.|+++....+.. .++.++++|+.+. .+.++||+|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~--~~v~~~~~D~~~~-~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVT--DRIQIIHSNWFEN-IEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc--cceeeeecchhhh-CcCCCccEEEECC
Confidence 4689999999999999998875 6789999999999999999987654322 4789999997652 3456899999864
Q ss_pred cccCc--------------c------------cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh
Q 025144 150 GLRNV--------------V------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203 (257)
Q Consensus 150 ~l~~~--------------~------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
..... + ....+++.+.+.|+|||.+++. ..
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig----------------------- 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IG----------------------- 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-EC-----------------------
Confidence 32211 0 1244677888999999998653 22
Q ss_pred ccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEee
Q 025144 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 255 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~ 255 (257)
+...+.+.+++.+.||..++......|..+++++
T Consensus 271 ------------------~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 271 ------------------FKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------------------CchHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 1134678889999999988877776776666553
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=105.49 Aligned_cols=108 Identities=22% Similarity=0.320 Sum_probs=83.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++++...+ .++.++.+|+.+. +++++||+|
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~V 105 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVV 105 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEE
Confidence 4566789999999999999988875 2 3489999999999999998875443 3578888888763 456789999
Q ss_pred EecccccCcc---------------------cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVV---------------------DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~---------------------~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++....... ....+++++.++|||||.+++....
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9975433221 1356788899999999999876443
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-13 Score=108.60 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=81.0
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 150 (257)
.+|||+|||+|.++..++... +..+++++|+|+.+++.|+++.+..+.. .++.++++|+.+. +++++||+|+++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~--~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLE--DRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC--CcEEEEECchhhh-CCCCCccEEEECCC
Confidence 689999999999999999884 6789999999999999999998755432 4699999998652 34468999998742
Q ss_pred cc-------------Ccc------------cHHHHHHHHHhcccCCCEEEEE
Q 025144 151 LR-------------NVV------------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 151 l~-------------~~~------------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.. +.+ ....+++.+.+.|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 111 1256789999999999999763
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=105.63 Aligned_cols=112 Identities=24% Similarity=0.316 Sum_probs=97.9
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+....++.|+.+|+|.|.|+|.++.+|+..+++..+++.+|..++..+.|+++++..+.. +++.+..+|+.+...++
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--DRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc--cceEEEecccccccccc
Confidence 4556678999999999999999999999998888889999999999999999999887543 45999999999866554
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.||+|++ .+++|-+.++++.++|+|||.+++..+
T Consensus 163 -~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 -DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999987 667999999999999999999987653
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-13 Score=100.36 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=115.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCCC--CC------CCCcc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALDL--PF------SDCFF 142 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~--~~------~~~~~ 142 (257)
+|||||||||..+.++++.+ |.....-.|+++..+...+......+. +|+ .-+..|+... +. ..++|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCCCccccccccCCCCc
Confidence 69999999999999999998 788999999999887666665544332 222 2234555443 21 34689
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|+|++.+++|-.+ ..+.+++...++|++||.|++..+..............+...+...... -
T Consensus 104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~---------------~ 168 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE---------------W 168 (204)
T ss_pred ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC---------------c
Confidence 9999999999775 5788999999999999999987655444333222222221111111110 1
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeeecCceeEEEe
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 254 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~ 254 (257)
...+.+++.++..++|++..+.++++.....++.
T Consensus 169 GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 169 GIRDIEDVEALAAAHGLELEEDIDMPANNLLLVF 202 (204)
T ss_pred CccCHHHHHHHHHHCCCccCcccccCCCCeEEEE
Confidence 2458899999999999999999999877666554
|
The function of this family is unknown. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=116.10 Aligned_cols=124 Identities=22% Similarity=0.335 Sum_probs=97.6
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.....+...+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++++..+. .++.++++|..+
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhh
Confidence 33444555566778889999999999999999999875567999999999999999999876653 478999999987
Q ss_pred CC----CCCCcccEEEecc------cccCccc----------------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 135 LP----FSDCFFDAITMGY------GLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 135 ~~----~~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+ ...++||.|++.. ++++.++ ...+|.++.+.|||||.++..+.+.
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 64 3357899999743 3333332 3577999999999999998877554
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=103.94 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
....+..+...+...++.+|||+|||+|.++..+++. .++.+++++|+|+.+++.++++++..+. .+++++.+|+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchH
Confidence 3344555666677778899999999999999999876 3567999999999999999998865442 47899999886
Q ss_pred C-CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 134 D-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 134 ~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ++.....+|.+++.. ..+...+++++.+.|+|||.+++....
T Consensus 101 ~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 101 ECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4 221123467766532 235678999999999999999887643
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=107.41 Aligned_cols=113 Identities=25% Similarity=0.305 Sum_probs=87.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....++..+.+.++.+|||||||+|+.+..++...++...|+++|..+...+.|++++...+. .++.++.+|...-.
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---DNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---HSEEEEES-GGGTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---CceeEEEcchhhcc
Confidence 445566777899999999999999999999999887777899999999999999999987654 48999999987644
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+||.|++.......+. .+.+.|++||++++..
T Consensus 137 ~~~apfD~I~v~~a~~~ip~------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H------HHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHHH------HHHHhcCCCcEEEEEE
Confidence 34578999999887765542 4667789999997743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=99.59 Aligned_cols=106 Identities=29% Similarity=0.409 Sum_probs=86.3
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEe
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 147 (257)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+.. .+++++++|..+.. +++++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD--DRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT--TTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC--ceEEEEECchhhchhhccCceeEEEEE
Confidence 4589999999999999999883 579999999999999999988765433 57999999998764 67899999999
Q ss_pred cccccCcc--------cHHHHHHHHHhcccCCCEEEEEee
Q 025144 148 GYGLRNVV--------DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 148 ~~~l~~~~--------~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+..+.... ....+++++.++|||||.+++...
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 88776432 236789999999999999987653
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=110.23 Aligned_cols=103 Identities=22% Similarity=0.245 Sum_probs=79.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++....+.. .++.+...+... ..+++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~--~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVS--DRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeccccc--ccCCCceEEEE
Confidence 46789999999999999888765 3 358999999999999999987654322 345666665332 23578999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+...+ ....++.++.+.|||||.+++...
T Consensus 232 n~~~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 232 NILAE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecCHH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 76533 346789999999999999988653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=104.29 Aligned_cols=111 Identities=21% Similarity=0.155 Sum_probs=87.0
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+...++.+|||+|||+|..+..+++.. .+++++|.++++++.++++++..+. .++.+..+|..+..
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL---HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC---CceEEEECCcccCC
Confidence 34455566777888999999999999998877763 4899999999999999998866532 46899999986633
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.++||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 334789999998766544 3467889999999977543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-13 Score=98.12 Aligned_cols=162 Identities=20% Similarity=0.242 Sum_probs=95.9
Q ss_pred chhHHHHhhhhhhhhhhhhhh---hhhhhHHHHHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCC
Q 025144 28 SSERQELFSRIAPVYDNLNDL---LSFGQHRIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s 103 (257)
+++..++|.+-.+.|+.+... ....+...-...+..++. .++...|.|+|||.+.++..+. .+.+|.-+|+-
T Consensus 27 s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLv 102 (219)
T PF05148_consen 27 SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLV 102 (219)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc----cCceEEEeecc
Confidence 455555655544444333221 111122222344555554 4445799999999999886653 34689999985
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+ .+-.+..+|+...|++++++|++++..+|... +...++++.+|+||+||.|.|.+...
T Consensus 103 a------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~S-- 161 (219)
T PF05148_consen 103 A------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKS-- 161 (219)
T ss_dssp -------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGG--
T ss_pred C------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEecc--
Confidence 4 35568889999999999999999988776644 67889999999999999999988542
Q ss_pred chhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEE
Q 025144 184 QPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~ 252 (257)
++-+.+++.+.++..||+.... +.....+..
T Consensus 162 -------------------------------------Rf~~~~~F~~~~~~~GF~~~~~-d~~n~~F~~ 192 (219)
T PF05148_consen 162 -------------------------------------RFENVKQFIKALKKLGFKLKSK-DESNKHFVL 192 (219)
T ss_dssp -------------------------------------G-S-HHHHHHHHHCTTEEEEEE-E--STTEEE
T ss_pred -------------------------------------cCcCHHHHHHHHHHCCCeEEec-ccCCCeEEE
Confidence 3446688889999999997774 333444443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=101.71 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=92.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+.+.++.+|||||||+|+.+..+++.. .+|+.+|..++..+.|+++++..+. .|+.+.++|...--
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~---~nV~v~~gDG~~G~ 133 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY---ENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC---CceEEEECCcccCC
Confidence 34456677888999999999999999999999884 4999999999999999999987764 58999999998744
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+..+||.|++......+++ .+.+.||+||++++..-
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 44578999999888777764 46678899999987543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-14 Score=104.93 Aligned_cols=103 Identities=23% Similarity=0.276 Sum_probs=78.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
.++|+|||+|..++.+++.+ .+|+++|+|++|++.+++......- .....+...+..++.-.+++.|+|++..++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhH
Confidence 89999999998888888774 5899999999999999887432110 012334444444443347899999999999
Q ss_pred cCcccHHHHHHHHHhcccCCC-EEEEEeec
Q 025144 152 RNVVDKRKALEESFRVLKPGS-RISVLDFN 180 (257)
Q Consensus 152 ~~~~~~~~~l~~~~~~Lk~gG-~l~~~~~~ 180 (257)
|++ |.+++++.++++||++| .+.+-..+
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999 57999999999998766 66665554
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-13 Score=105.25 Aligned_cols=139 Identities=24% Similarity=0.284 Sum_probs=99.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|-+++..++. + -.+++|+|+++-+++.++++....+.. ..++....+.... ...++||+|++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~--~~~~~~~~~~~~~-~~~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVE--LLVQAKGFLLLEV-PENGPFDVIVA 235 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCc--hhhhcccccchhh-cccCcccEEEe
Confidence 37889999999999999998876 2 347999999999999999988654321 1122333333222 23468999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
+-..+ -...+...+.+.+||||.+++.-.... ..+.
T Consensus 236 NILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------------------q~~~ 271 (300)
T COG2264 236 NILAE---VLVELAPDIKRLLKPGGRLILSGILED-----------------------------------------QAES 271 (300)
T ss_pred hhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------------------HHHH
Confidence 66222 246788999999999999987642210 2367
Q ss_pred HHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 228 LEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
+.+.++++||++++.... +.|..++++|
T Consensus 272 V~~a~~~~gf~v~~~~~~--~eW~~i~~kr 299 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER--EEWVAIVGKR 299 (300)
T ss_pred HHHHHHhCCCeEeEEEec--CCEEEEEEEc
Confidence 788999999999887766 3366666554
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=102.30 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=83.3
Q ss_pred HHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
+.+.+.+..++.. .++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++++.. +.+++++|+.
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~ 143 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLY 143 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeech
Confidence 3344444444332 234589999999999999998874 5679999999999999999987542 3578889987
Q ss_pred CCCC--CCCcccEEEecccccCcc----------------------c----HHHHHHHHHhcccCCCEEEEE
Q 025144 134 DLPF--SDCFFDAITMGYGLRNVV----------------------D----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 134 ~~~~--~~~~~D~v~~~~~l~~~~----------------------~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+... ..++||+|+++....... + ...++..+.+.|+|||.+++.
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5321 135799999976543110 1 246778888999999999765
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=102.94 Aligned_cols=137 Identities=22% Similarity=0.295 Sum_probs=104.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
+|||+|||+|..++.++... +..+|+++|+|+.+++.|+++....+. .++.+++.|..+. . .++||+|+++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-~-~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-L-RGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-c-CCceeEEEeCCCC
Confidence 79999999999999999984 678999999999999999999876543 3566677776652 2 3489999997552
Q ss_pred cCcc-----------c--------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccC
Q 025144 152 RNVV-----------D--------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 206 (257)
Q Consensus 152 ~~~~-----------~--------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (257)
-.-+ + ..+++..+.+.|+|||.+++-. .
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-g-------------------------- 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-G-------------------------- 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-C--------------------------
Confidence 2111 1 2556778888999988886542 1
Q ss_pred CchhhhhhhHHHHhccCCHHHHHHHHHHcC-ceeeEEeeecCceeEEEeee
Q 025144 207 GLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~g~~~~~~~~ 256 (257)
+-+.+.+.+++.+.| |..+.......|...++.++
T Consensus 240 ---------------~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 240 ---------------LTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred ---------------CCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 224578899999999 78788888888888777765
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-13 Score=104.53 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=90.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..++..+.+.||.+|||.|.|+|.++..|++.++|..+|+.+|..++..+.|+++++..+.. .++.+.+.|+.+..++
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~--~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD--DNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC--TTEEEEES-GGCG--S
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC--CCceeEecceeccccc
Confidence 45667789999999999999999999999999989999999999999999999999887654 6899999999753332
Q ss_pred ---CCcccEEEecccccCcccHHHHHHHHHhcc-cCCCEEEEEe
Q 025144 139 ---DCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLD 178 (257)
Q Consensus 139 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~~~~ 178 (257)
++.+|.|++ .+++|-..+..+.++| ++||.+.+..
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 367999987 5678888999999999 8999997764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-13 Score=105.89 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=94.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|-+++..++. + -.+|+++|+++.+++.|+++....+.. .++.+. ...+ ...++||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~--~~~~v~--~~~~--~~~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVE--DRIEVS--LSED--LVEGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-T--TCEEES--CTSC--TCCS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCC--eeEEEE--Eecc--cccccCCEEE
Confidence 356779999999999999988776 3 348999999999999999998765543 344332 2222 2348899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++-... -+..++..+.+.|+|||.+++.-.... ..+
T Consensus 231 ANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------------------~~~ 266 (295)
T PF06325_consen 231 ANILAD---VLLELAPDIASLLKPGGYLILSGILEE-----------------------------------------QED 266 (295)
T ss_dssp EES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------------------HHH
Confidence 876433 346778889999999999988754321 346
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
++.+.+++ ||++.+.... ++ |..++++
T Consensus 267 ~v~~a~~~-g~~~~~~~~~-~~-W~~l~~~ 293 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREE-GE-WVALVFK 293 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEE-TT-EEEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEE-CC-EEEEEEE
Confidence 77788876 9998877754 33 4444444
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=103.55 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
...++||||+|.|..+..++..+ .+|+++|.|+.|....+++ +++++..+- +.-.+.+||+|.|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----------g~~vl~~~~--w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----------GFTVLDIDD--WQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----------CCeEEehhh--hhccCCceEEEeeh
Confidence 35689999999999999998775 5899999999998777654 444443333 33235689999999
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++|....+|..+|+.+++.|+|+|.+++..
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999999999999999997754
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=109.04 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=87.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+.+.++.+|||+|||+|..+..+++..+....|+++|.++++++.|+++++..+. .++.++++|.....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhcc
Confidence 334455566777888999999999999999998864345799999999999999998765442 57899999987654
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...++||+|++...+... ...+.+.|+|||.+++.
T Consensus 145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 444679999997665543 23467789999998774
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=102.91 Aligned_cols=153 Identities=24% Similarity=0.269 Sum_probs=104.8
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh-h-----h---hccCCCeeE
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-V-----S---KACYKNIEW 127 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~-----~---~~~~~~~~~ 127 (257)
+.+.+.. +...++.+||..|||.|..+..|+++ +.+|+|+|+|+.+++.+.+.... . . .....++++
T Consensus 26 L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 26 LVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 3333333 55677789999999999999999987 68999999999999998432211 0 0 011247899
Q ss_pred EEccCCCCCCCC-CcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhc
Q 025144 128 VEGDALDLPFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204 (257)
Q Consensus 128 ~~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (257)
+++|+.+++... ++||+|+=...++.++ ...+..+.+.++|+|||.++++.+..+......
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~G---------------- 165 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEG---------------- 165 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSS----------------
T ss_pred EEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCC----------------
Confidence 999999976432 5799999877788775 578899999999999999655554433211000
Q ss_pred cCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
..| ..+.+++++++. .+|++.....
T Consensus 166 -----PPf---------~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 166 -----PPF---------SVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -----SS-------------HHHHHHHHT-TTEEEEEEEE
T ss_pred -----cCC---------CCCHHHHHHHhc-CCcEEEEEec
Confidence 001 236789999988 8898776554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-13 Score=111.85 Aligned_cols=132 Identities=19% Similarity=0.324 Sum_probs=100.5
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 136 (257)
...+...+...++.+|||+|||+|..+.++++..++..+++++|+++.+++.++++++..+. .++.+.+.|...++
T Consensus 226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhh
Confidence 34455566778889999999999999999999876678999999999999999999876653 46889999988765
Q ss_pred CCCCcccEEEecccc------cCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHH
Q 025144 137 FSDCFFDAITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE 192 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 192 (257)
..+++||.|++.... ..-++ ..++|.++.+.|||||.++..+.+.........+..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~ 380 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKR 380 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHH
Confidence 345789999974332 11111 255699999999999999888877544444333333
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=101.88 Aligned_cols=126 Identities=15% Similarity=0.293 Sum_probs=95.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
....+|||+|||+|.++..++.+. +..+++++|+++.+++.++++. +++.++++|+.+... +.+||+|++
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~-~~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES-NEKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc-cCCCcEEEE
Confidence 345699999999999999888763 4569999999999999998874 578899999988653 468999999
Q ss_pred cccccCccc--------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCC
Q 025144 148 GYGLRNVVD--------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207 (257)
Q Consensus 148 ~~~l~~~~~--------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (257)
+..+.+.+. ....+......|+|+|.+.+.-...+-
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~------------------------ 188 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY------------------------ 188 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc------------------------
Confidence 888877521 245667778888999976554211100
Q ss_pred chhhhhhhHHHHhccCCHHHHHHHHHHcCce
Q 025144 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFS 238 (257)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 238 (257)
| ..-++.++.+++|+++||.
T Consensus 189 ----y-------~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 189 ----Y-------DGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred ----c-------cccCCHHHHHHHHHhcCcE
Confidence 0 1245789999999999996
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=105.46 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCCC-CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
+.+.+||+||||+|..+..+++. .+..+|+++|+++.+++.+++.+...... ..++++++.+|..... ..+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 34569999999999999999876 23468999999999999999987543211 1268999999987642 24578999
Q ss_pred EEecccccCccc----HHHHHHHHHhcccCCCEEEEE
Q 025144 145 ITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 145 v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998654332221 266789999999999998764
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=104.06 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=93.4
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.....+.+.++.+|||+|||+|..+..+++.+++...|+++|+++.+++.++++++..+. .++.+.+.|...++...
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhc
Confidence 333456677889999999999999999998876567999999999999999999876543 47899999987765445
Q ss_pred CcccEEEecccccC------ccc----------------HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 140 CFFDAITMGYGLRN------VVD----------------KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 140 ~~~D~v~~~~~l~~------~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+.||.|++...... -++ ...+|+.+.+.|||||.++..+.+...
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 67999997433221 111 245899999999999999887765433
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=102.32 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=111.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
...++|||||-|....++... .-.+++.+|.|..|++.++.... ++ -......+|-+.+++.++++|+|+++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~qd---p~--i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQD---PS--IETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccCC---Cc--eEEEEEecchhcccccccchhhhhhhh
Confidence 458999999999999999877 24589999999999999887642 10 245667888888999999999999999
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHH
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLE 229 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (257)
.+||..+++..+.+++..|||+|.++...+......-....... . ......+. ..++..+-...++-
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqL-A-----elER~GGi-------SphiSPf~qvrDiG 212 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQL-A-----ELEREGGI-------SPHISPFTQVRDIG 212 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhH-H-----HHHhccCC-------CCCcChhhhhhhhh
Confidence 99999999999999999999999997654443332111111110 0 00111111 11223355678999
Q ss_pred HHHHHcCceeeEEe
Q 025144 230 KLALEIGFSRAKHY 243 (257)
Q Consensus 230 ~~l~~~Gf~~~~~~ 243 (257)
.+|.++||....+.
T Consensus 213 ~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 213 NLLTRAGFSMLTVD 226 (325)
T ss_pred hHHhhcCcccceec
Confidence 99999999866543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=100.21 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=89.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-------h--hccCCCeeEEEccCCCCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-------S--KACYKNIEWVEGDALDLP 136 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~--~~~~~~~~~~~~d~~~~~ 136 (257)
...++.+||+.|||.|..+.+|+++ +.+|+|+|+|+..++.+.+..... . .....+++++++|+.+++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3445679999999999999999986 789999999999999976532100 0 000157999999999985
Q ss_pred CC---CCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 FS---DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~~---~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.. .+.||+|+-...+++++ ...+..+.+.++|+|||.+++..+..
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 32 26799999988899886 36788999999999999998877653
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=102.81 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=101.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe
Q 025144 46 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125 (257)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 125 (257)
....+...-+.-.+.++..+....+.+|||+|||.|.+++.+++.. |..+++.+|.|..+++.++++++.... .+.
T Consensus 135 pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~ 210 (300)
T COG2813 135 PGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV---ENT 210 (300)
T ss_pred CCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC---Ccc
Confidence 4455555666667788888877777799999999999999999994 789999999999999999999876443 233
Q ss_pred eEEEccCCCCCCCCCcccEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEe
Q 025144 126 EWVEGDALDLPFSDCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 126 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.++..|..+.. . ++||+|+++..+|.=.+ ..++++...+.|++||.|.++.
T Consensus 211 ~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 211 EVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred EEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 67777776633 3 38999999999984432 2478999999999999997765
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=109.47 Aligned_cols=127 Identities=18% Similarity=0.285 Sum_probs=95.5
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.-...+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..+.. ..+.+..+|....
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~ 301 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccc
Confidence 3445556667788889999999999999999998864 679999999999999999998765432 1334466776554
Q ss_pred CC--CCCcccEEEec------ccccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 136 PF--SDCFFDAITMG------YGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 136 ~~--~~~~~D~v~~~------~~l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+. ++++||.|++. .+++..++ ...+|.++.++|||||.+++.+.+.....
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 32 45789999963 23444333 35789999999999999999887764433
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=108.68 Aligned_cols=123 Identities=23% Similarity=0.325 Sum_probs=94.8
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
......+...++.+|||+|||+|..+..+++.+++..+++++|+|+.+++.++++++..+. .++.+.++|..++. +
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-c
Confidence 3444556677888999999999999999998765567999999999999999999876543 47899999998764 4
Q ss_pred CCcccEEEeccc------ccCcc----------------cHHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 139 DCFFDAITMGYG------LRNVV----------------DKRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 139 ~~~~D~v~~~~~------l~~~~----------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+++||+|++... +...+ ....+|.++.+.|||||.+++.+.+.....
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~E 384 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEE 384 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 568999996321 11111 123589999999999999999887664433
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-12 Score=102.08 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=102.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh--hhhhh--hccCCCeeEEEccCCCC-CCCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVS--KACYKNIEWVEGDALDL-PFSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~ 142 (257)
..+.+||++|||+|..+..+++. .+..+++++|+++++++.|++. +.... .-..++++++.+|..++ ....++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 44569999999999999988876 3457999999999999999962 11111 10126899999999874 3335689
Q ss_pred cEEEecccccC---ccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 143 DAITMGYGLRN---VVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 143 D~v~~~~~l~~---~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
|+|++...-.. ... -..+++.+++.|+|||++++..-+. ... ...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp----~~~--~~~------------------------ 277 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP----ADA--PLV------------------------ 277 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh----hhh--HHH------------------------
Confidence 99998743111 111 2568999999999999987653111 000 000
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeee---cCceeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYEL---SGGLMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~~g~~~~~~~~k 257 (257)
...+.+.++++|+.+...... +++.|++.+|.|
T Consensus 278 -------~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 278 -------YWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred -------HHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 023567888999987765554 355588877754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=97.37 Aligned_cols=102 Identities=29% Similarity=0.396 Sum_probs=77.4
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------- 136 (257)
...+.++.+|||+|||+|.++..+++...+..+++++|+|+.+ .. +++.+++.|..+..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------CCceEEEeeCCChhHHHHHHH
Confidence 3456788899999999999999998886455689999999854 11 47888888987642
Q ss_pred -CCCCcccEEEeccccc--------Cc---ccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLR--------NV---VDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.++||+|++....+ +. .+...+++.+.+.|+|||.+++..+
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3456899999865322 11 1236789999999999999988643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-12 Score=107.49 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=92.7
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.-.......+...++.+|||+|||+|..+..+++.. ++.+|+++|.++.+++.++++++..+ .++.++++|..+.
T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~ 305 (427)
T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDP 305 (427)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccc
Confidence 334445556677888999999999999999999885 44799999999999999999987654 2468899999875
Q ss_pred C--CCCCcccEEEecccccC------cc---------c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 P--FSDCFFDAITMGYGLRN------VV---------D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ~--~~~~~~D~v~~~~~l~~------~~---------~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+ .++++||.|++...... -+ + ...++..+.+.|||||.+++.+.+.
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3 33568999996443211 11 1 2368999999999999998887654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=87.80 Aligned_cols=101 Identities=36% Similarity=0.532 Sum_probs=83.6
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEeccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 150 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 150 (257)
+|+|+|||.|..+..+++. +..+++++|+++.++..+++...... ..++.++..|..+... ..++||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999999999988872 46799999999999998884322211 2578999999988653 4578999999999
Q ss_pred ccC-cccHHHHHHHHHhcccCCCEEEEE
Q 025144 151 LRN-VVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 151 l~~-~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+++ ......+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998 778899999999999999999765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=102.22 Aligned_cols=112 Identities=12% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
..++.+|||||||+|.++..+++.. |..+++++|+++++++.|++.+...+. .++++++.+|..+. ....++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEE
Confidence 3456799999999999999999885 778999999999999999988753221 16899999998653 2223679999
Q ss_pred Eecccc-cCcc---cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 146 TMGYGL-RNVV---DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 146 ~~~~~l-~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++...- ...+ ....+++.+.+.|+|||.+++..+..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 975311 1111 13689999999999999998765443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=105.80 Aligned_cols=110 Identities=23% Similarity=0.354 Sum_probs=79.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-------cCCCeeEEEccCCCCC----C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-------CYKNIEWVEGDALDLP----F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~~d~~~~~----~ 137 (257)
++.+|||+|||-|..+.-+... .-..++|+|++...++.|+++++..... ..-...++.+|..... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7789999999999988888765 3469999999999999999998432211 0123567888876531 2
Q ss_pred CC--CcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 138 SD--CFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 138 ~~--~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++ ..||+|-|.+++|+. +....+|+++.+.|+|||.++...+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 33 589999999999987 23566899999999999999877654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.5e-12 Score=106.80 Aligned_cols=120 Identities=25% Similarity=0.318 Sum_probs=93.0
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 136 (257)
...+...+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++++..+. .++.++++|..+..
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccc
Confidence 34455566777888999999999999999999865667999999999999999999876543 36899999998753
Q ss_pred -CCCCcccEEEecccccC------ccc----------------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -FSDCFFDAITMGYGLRN------VVD----------------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~------~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++ ++||+|++...... .++ ...+|..+.+.|||||.++..+...
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 33 68999998643211 111 1357999999999999998766554
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=99.94 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=91.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
+.+..+....++.+|||+|||+|..+..++...++..+++++|.++++++.|+++++..+.. .+++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHH
Confidence 33444455566789999999999999999887666779999999999999999999876654 5799999999763 1
Q ss_pred ----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+.++||+|++... -+.....+..+.+.|+|||.+++.+..
T Consensus 136 l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 12468999998542 234567889999999999998775533
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=93.26 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=105.9
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhh---hhHHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCC
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSF---GQHRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s 103 (257)
++...++|..-...++.+...... .+...-...+.+.+.. +....|.|+|||.+.++. . ....|+.+|+-
T Consensus 135 s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~ 208 (325)
T KOG3045|consen 135 SSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLV 208 (325)
T ss_pred cHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---c---cccceeeeeee
Confidence 345555666554444443322211 1111112334444433 456689999999998876 1 24589999984
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+ .+-.++.+|+.+.|+++++.|++++..+|.- .+...++++++|+|++||.++|.+...
T Consensus 209 a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S-- 267 (325)
T KOG3045|consen 209 A------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS-- 267 (325)
T ss_pred c------------------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh--
Confidence 4 4778899999999999999999998766553 478889999999999999999987542
Q ss_pred chhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 184 QPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
++-+...+...|...||.+.....
T Consensus 268 -------------------------------------Rf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 268 -------------------------------------RFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred -------------------------------------hcccHHHHHHHHHHcCCeeeehhh
Confidence 344667888999999998665443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-12 Score=92.61 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=81.2
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++... ++++++++|+.++++++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCccc
Confidence 3455566777889999999999999999987 468999999999999999887531 58999999999987766
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhc--ccCCCEEEEE
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRV--LKPGSRISVL 177 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~--Lk~gG~l~~~ 177 (257)
.++|.|+++..++.. ...+.++.+. +.++|.+++.
T Consensus 76 ~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 76 LQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 679999987765532 2334444432 3466777554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=107.73 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=81.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh--hhhhhh--ccCCCeeEEEccCCCC-CCCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSK--ACYKNIEWVEGDALDL-PFSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~ 142 (257)
+++.+|||+|||+|..+..++++ ++..+++++|+++++++.++++ +..... -..++++++.+|..+. ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999999875 3337999999999999999984 322111 0126899999998863 2234789
Q ss_pred cEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+|++.......+. ..++++.+++.|||||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999754333222 2457899999999999997654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-11 Score=93.79 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=80.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
.+.+||+||||+|..+..+++.. +..+++++|+++++++.+++.+..... ...++++++..|.... ...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999999888762 456899999999999999987654321 1125788888887552 12246899999
Q ss_pred ecccccCcc--c--HHHHHHHHHhcccCCCEEEEE
Q 025144 147 MGYGLRNVV--D--KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 147 ~~~~l~~~~--~--~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+......-+ . ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 866532221 1 357789999999999999775
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=94.60 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCC--CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLP--FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~--~~~~~~D~ 144 (257)
+.+.+||+||||.|..+..+++. ++..+++.+|+++.+++.+++.+..... -..++++++.+|....- .++++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45679999999999999999876 3346899999999999999998754211 11268999999976431 23568999
Q ss_pred EEecccccCccc----HHHHHHHHHhcccCCCEEEEE
Q 025144 145 ITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 145 v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++...-...+. -..+++.+++.|+|||.++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998654332221 256799999999999998654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-11 Score=91.09 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=87.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-----CCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-----FSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~ 140 (257)
.....+|||||+++|..+..+++.++++.+++.+|.+++..+.|++.++..+.. .+++++.+|..+. + .+.+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEES-HHHHHHHHHHTTTTT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEEeccHhhHHHHHhccCCC
Confidence 345569999999999999999998877789999999999999999999876654 6899999998763 1 1135
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+||+|++... -.+....++.+.+.|+|||.+++-+..
T Consensus 121 ~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 121 QFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp SEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 8999998663 345677888899999999999776533
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=94.89 Aligned_cols=121 Identities=23% Similarity=0.356 Sum_probs=90.2
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc---CCCeeEEEccC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC---YKNIEWVEGDA 132 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~ 132 (257)
.|.+..+...-..++..++|+|||-|..++.+.+. .-.+++++|++...+++|++++....... .-...++.+|.
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 34444444444567789999999999988887665 23589999999999999999987544321 11367888888
Q ss_pred CCC------CCCCCcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDL------PFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~------~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
... ++++.+||+|-|.+++|+. .....+|+++.+.|+|||+++-..
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 753 2344559999999999966 246778999999999999996543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=91.64 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=93.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCC-C
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL-P 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~-~ 136 (257)
..+..++...+.++|||||.+.|..+..++..++.+.+++.+|.++++.+.|++++++.+.. +++..+. +|..+. .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~~~gdal~~l~ 126 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEEecCcHHHHHH
Confidence 44444556667889999999999999999999854779999999999999999999887765 5688888 466542 2
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
...++||+|++.. .-.+.+..++.+.++|+|||.+++-+...
T Consensus 127 ~~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 127 RLLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred hccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3468999999754 23456788999999999999998765444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=94.81 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=93.5
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
+.+..+....+..+|||||+++|..+..++...+++.+++.+|.+++..+.|+++++..+.. .+++++.+|+.+. +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHH
Confidence 44444555666789999999999999999988766778999999999999999999877654 6899999998663 1
Q ss_pred C----CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 F----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+ ..++||+|++... -.+....++.+.+.|+|||.+++-+..+
T Consensus 186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 1 1368999998653 3356778899999999999997765443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=99.63 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+..++...++.+|||+|||+|.++..+++. ..+++++|+|++|++.|+++++..+. .++.++++|+.
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~ 355 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL---DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChH
Confidence 3455566666777778889999999999999999877 36899999999999999998765442 47999999987
Q ss_pred CC----CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 134 DL----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 134 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+. ++.+++||+|+++..-.- ....++.+.+ ++|++.+++..
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 53 233567999998654332 2345555555 58888877664
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=90.43 Aligned_cols=104 Identities=25% Similarity=0.412 Sum_probs=82.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C--CCCCcccEEEe
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--FSDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~ 147 (257)
..+||||||.|.++..++.. .|+..++|+|+....+..+.++....+. .|+.++++|+..+ . ++++++|.|++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l---~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL---KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT---SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc---cceEEEEccHHHHHhhcccCCchheEEE
Confidence 38999999999999999999 4899999999999999999988866543 7999999999883 2 55689999999
Q ss_pred cccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.--+... -..++..++++|+|||.+.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 877555431 3778999999999999997764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-11 Score=91.09 Aligned_cols=96 Identities=22% Similarity=0.459 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC--CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.|+++. .++.+++.|+...++ +++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCEEEEcchhcccc-cCCccEEE
Confidence 366999999999999999987641 3468999999999999999875 468899999987654 46899999
Q ss_pred ecccccCcc--c----------HHHHHHHHHhcccCCCE
Q 025144 147 MGYGLRNVV--D----------KRKALEESFRVLKPGSR 173 (257)
Q Consensus 147 ~~~~l~~~~--~----------~~~~l~~~~~~Lk~gG~ 173 (257)
++-.+.... + ...++....+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 987766331 1 34578888886666664
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=104.76 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=62.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-------------ccCCCeeEEEccCCCCC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------ACYKNIEWVEGDALDLP 136 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~d~~~~~ 136 (257)
+.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|+++...... ....+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4589999999999999999885 567999999999999999999865321 11147999999997743
Q ss_pred CC-CCcccEEEeccc
Q 025144 137 FS-DCFFDAITMGYG 150 (257)
Q Consensus 137 ~~-~~~~D~v~~~~~ 150 (257)
.. ..+||+|+++-.
T Consensus 198 ~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 198 RDNNIELDRIVGCIP 212 (1082)
T ss_pred cccCCceEEEEECCC
Confidence 21 236999998654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-10 Score=80.39 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=101.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.....+.+...+....+.-|||+|.|||.++..++++-.+...++.+|.|++......+.+ +..+++++|..
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~ 104 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAF 104 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCccccccchh
Confidence 4456677777788888889999999999999999988656679999999999999998887 67889999998
Q ss_pred CCC-----CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 134 DLP-----FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 134 ~~~-----~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++. +....||.|++.-.+..++ ...++|+.+...|.+||.++......
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 764 4567799999988888886 35778999999999999998877663
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=102.74 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 147 (257)
++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.++++++..+... .+++++++|+.+.. ...++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4679999999999999999875 2 3479999999999999999987654311 37899999987631 11468999998
Q ss_pred cccccC-----------cccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRN-----------VVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...... ..+...++..+.++|+|||.+++..
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 644211 1234667888999999999987653
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=89.73 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=112.3
Q ss_pred ccceeeeeeccCCchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCC
Q 025144 15 RSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~ 94 (257)
++...+.|+++.+......+|.-+...-...+.+.++.....+.+.+......-.++.|||+|||+|-++.+.++. + .
T Consensus 123 h~~~kSvFs~rtEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqA-G-A 200 (517)
T KOG1500|consen 123 HLRPKSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQA-G-A 200 (517)
T ss_pred eccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHh-C-c
Confidence 4555677888777777777776555554555555666666677777776666667889999999999999888776 2 4
Q ss_pred ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc--ccHHHHHHHHHhcccCCC
Q 025144 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGS 172 (257)
Q Consensus 95 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~gG 172 (257)
.+|++++. .+|.+.|++.++..... .+|.++.+.+++..+| ++.|+|++-.+=..+ +...+..-..++.|||.|
T Consensus 201 ~~vYAvEA-S~MAqyA~~Lv~~N~~~--~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~G 276 (517)
T KOG1500|consen 201 KKVYAVEA-SEMAQYARKLVASNNLA--DRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNG 276 (517)
T ss_pred ceEEEEeh-hHHHHHHHHHHhcCCcc--ceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCC
Confidence 58999997 56999999887654333 7899999999998876 779999974432222 223334446779999999
Q ss_pred EEE
Q 025144 173 RIS 175 (257)
Q Consensus 173 ~l~ 175 (257)
..+
T Consensus 277 kMf 279 (517)
T KOG1500|consen 277 KMF 279 (517)
T ss_pred ccc
Confidence 874
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-10 Score=89.81 Aligned_cols=153 Identities=22% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
-...+|+|+|.|+.+..+...+ | ++.+++.+...+..++..+. +.+..+-+|..+- .|. -|+|++..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEe
Confidence 4789999999999999999875 3 47888887777777666652 2478888888875 443 47999999
Q ss_pred cccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHH-HHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 150 GLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 150 ~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++||+. |..++|+++++.|+|||.+++.+...+....... ...+... .+-..........-.+..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~------------~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRD------------MDLLMLTQTSGGKERTLK 312 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeeh------------hHHHHHHHhccceeccHH
Confidence 999996 4789999999999999999999875554211110 0000000 000000001111245889
Q ss_pred HHHHHHHHcCceeeEEeeecC
Q 025144 227 DLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
+++.++.++||....+.....
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~ 333 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAY 333 (342)
T ss_pred HHHhcchhhcCceeEEEeccC
Confidence 999999999998877665533
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=87.75 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=88.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 146 (257)
...+||||||.|.++..++++ +|...++|+|+....+..+.+++.+.+. .|+.+++.|+..+- +++++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 358999999999999999999 5899999999999999999998877653 39999999998742 4556999999
Q ss_pred ecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++.--|... ...++..+.++|+|||.|.+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 9887665532 3678999999999999998764
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=86.99 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC---CceEEEEeCChhHHHHHHhhhh-hhhhccCCCeeE--EEccCCCC----C
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQD-LVSKACYKNIEW--VEGDALDL----P 136 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~--~~~d~~~~----~ 136 (257)
+.++..|+|+|||+|.-+..|++.+.+ ...|+++|+|.++++.+.+++. .. ++.+.+ +.+|+.+. +
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhcc
Confidence 456678999999999999888887632 3579999999999999999886 22 245544 78888652 1
Q ss_pred C--CCCcccEEEec-ccccCcc--cHHHHHHHHHh-cccCCCEEEEE
Q 025144 137 F--SDCFFDAITMG-YGLRNVV--DKRKALEESFR-VLKPGSRISVL 177 (257)
Q Consensus 137 ~--~~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~-~Lk~gG~l~~~ 177 (257)
- ..+...+++.. .++.+++ +...+|+++++ .|+|||.+++.
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 1 12335666654 5788885 45678999999 99999988774
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-10 Score=85.11 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc---------------------------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------------------- 121 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------------------------- 121 (257)
.+..+|||||..|.++..+++.+++. .+.|+|+++..++.|++.+.......
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45689999999999999999998654 79999999999999998764211000
Q ss_pred ------------CCCeeEEEccCCCCCCCCCcccEEEecccccCc------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 122 ------------YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 122 ------------~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..|..+...|+. .+....||+|+|..+-.|+ +.+.++++++.++|.|||+|++-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111222 1234679999986654333 24789999999999999999653
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-09 Score=75.52 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=98.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
..-++|||||+|..+.+|++..+++..+.++|+++.+++...+..+..+ .++..++.|+.+- +.+++.|+++.+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhh-hccCCccEEEECC
Confidence 5589999999999999999998888999999999999988777654433 4688899998773 3458999999865
Q ss_pred cccCcc-----------------c----HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCc
Q 025144 150 GLRNVV-----------------D----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208 (257)
Q Consensus 150 ~l~~~~-----------------~----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
..---+ + ..+++..+-.+|.|.|.+++.....
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------------------- 171 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------------------- 171 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---------------------------
Confidence 432111 1 3566777888889999988765322
Q ss_pred hhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
-.++++.++++..||.......-
T Consensus 172 --------------N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 172 --------------NKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred --------------cCHHHHHHHHhhcccceeEEEEE
Confidence 14568888999999977665544
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-10 Score=93.22 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
++.+|||+|||+|.++...+.. ...+++++|.|+.+++.+++++...+.. ..++.++++|+.+.. ...++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 5779999999999998776543 3448999999999999999998764421 036899999997642 12468999
Q ss_pred EEecccccCcc---------cHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|++........ +...++....++|+|||.++....
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99876532111 234556678899999999976553
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-10 Score=91.38 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEE-ccCCCCC----CCCCcc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVE-GDALDLP----FSDCFF 142 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~-~d~~~~~----~~~~~~ 142 (257)
.+.++||||||+|.....++... ++.+++++|+++.+++.|+++++.. +.. .++.+.. .|..... .+.+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~--~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN--GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc--CcEEEEEccchhhhhhcccccCCce
Confidence 45799999999998888887764 5789999999999999999998765 232 4677754 3332221 235689
Q ss_pred cEEEecccccCc
Q 025144 143 DAITMGYGLRNV 154 (257)
Q Consensus 143 D~v~~~~~l~~~ 154 (257)
|+|+|+-.++.-
T Consensus 191 DlivcNPPf~~s 202 (321)
T PRK11727 191 DATLCNPPFHAS 202 (321)
T ss_pred EEEEeCCCCcCc
Confidence 999999887754
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=90.09 Aligned_cols=131 Identities=27% Similarity=0.386 Sum_probs=99.2
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.+.+.++|+.++..+.. .....|.+....+...+.+..++|+|||.|..... .|...+.+.|++...+
T Consensus 11 qeyVh~IYd~ia~~fs~-------tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~ 78 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSA-------TRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLL 78 (293)
T ss_pred HHHhHHHHHHhhhhccc-------cccCccHHHHHHHhccCCcceeeecccCCcccCcC-----CCcceeeecchhhhhc
Confidence 35566777777766332 23444544444444556688999999999976632 2556899999988887
Q ss_pred HHHHhhhhhhhhccCCCe-eEEEccCCCCCCCCCcccEEEecccccCccc---HHHHHHHHHhcccCCCEEEEEeec
Q 025144 108 SMASSRQDLVSKACYKNI-EWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+++. +. .+..+|+..+++++.+||.+++..++||+.. ...+++++.+.++|||..++..+.
T Consensus 79 ~~ak~~----------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 79 GGAKRS----------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cccccC----------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 776653 44 7899999999999999999999999999963 677899999999999997776554
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=92.23 Aligned_cols=110 Identities=13% Similarity=0.212 Sum_probs=77.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF- 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~- 137 (257)
+.+..++...++.+|||+|||+|.++..+++. +.+|+++|.++.+++.|+++.+..+. .+++++++|+.++..
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHHh
Confidence 33444554445689999999999999999875 46999999999999999998865542 479999999977532
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+.||+|++...-.-. ...+++.+ ..++|++.+++.
T Consensus 237 ~~~~~D~Vv~dPPr~G~--~~~~~~~l-~~~~~~~ivyvs 273 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGI--GKELCDYL-SQMAPRFILYSS 273 (315)
T ss_pred cCCCCeEEEECCCCCCc--cHHHHHHH-HHcCCCeEEEEE
Confidence 23579999987542211 12233333 335777666554
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=82.99 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=82.0
Q ss_pred HHHHHHHHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
+.+++.+..++ ...++.+|||+|||+|.++..++.+. ..+++++|.++.+++.++++++..+. .++.++++|+.
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~ 112 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNAL 112 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchHH
Confidence 33444444443 22456799999999999998765552 36999999999999999998876542 47899999987
Q ss_pred CC-CCCCCcccEEEecccccCcccHHHHHHHHHh--cccCCCEEEEEe
Q 025144 134 DL-PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLD 178 (257)
Q Consensus 134 ~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~~ 178 (257)
+. +...++||+|+++..+.. .-...++..+.+ +|+|++.+++..
T Consensus 113 ~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 113 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 63 222356999999887432 123445555544 478988887654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=89.29 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
+.+..++...+..+|||||+++|..+..++...+++.+++.+|.+++..+.|++.++..+.. .++.++.+|..+. +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHH
Confidence 33444445556679999999999999999988767789999999999999999999876654 6899999998763 1
Q ss_pred C-----CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 F-----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ..++||+|++... -......++.+.+.|+|||.+++-+..
T Consensus 147 l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 1 1268999998653 334567788889999999998775443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-09 Score=77.25 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=66.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..-.+.+|+|+|||||.++...+-. ++ .+|+++|+++++++.++++.++.. .++.++..|+.+. ...+|.+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~---~~~~dtv 112 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDF---RGKFDTV 112 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhc---CCccceE
Confidence 4455778999999999999877655 33 599999999999999999987633 6899999999987 4669999
Q ss_pred EecccccCc
Q 025144 146 TMGYGLRNV 154 (257)
Q Consensus 146 ~~~~~l~~~ 154 (257)
+++..+...
T Consensus 113 imNPPFG~~ 121 (198)
T COG2263 113 IMNPPFGSQ 121 (198)
T ss_pred EECCCCccc
Confidence 998776644
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-09 Score=92.47 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=81.8
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
+...+..++...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+. .+++++.+|+.+.
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l 353 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHH
Confidence 3444555566677789999999999999999876 35899999999999999998865442 5899999998752
Q ss_pred ---CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...+++||+|++...=..+ ...+++.+.+ ++|++.+++.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 1234579999975542111 2455555554 7888876654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.8e-10 Score=81.96 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=75.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFF 142 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 142 (257)
..++.+|||+|||+|..+..++... ...+|+..|.++ .++.++.+++........++.+...|-.+.. ...++|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4567799999999999999888773 457999999988 8898888876543111257788877765421 234689
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|+|+...+++.-.....+++.+.++|+++|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999988888999999999999999876665444
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-10 Score=90.31 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
....++..+...-+.-.+++|||+|||||-++.+.++. + -.+|+++|.|. +.+.|.+.+...+.. .-++++++.+
T Consensus 44 Rt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akA-G-A~~V~aVe~S~-ia~~a~~iv~~N~~~--~ii~vi~gkv 118 (346)
T KOG1499|consen 44 RTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKA-G-ARKVYAVEASS-IADFARKIVKDNGLE--DVITVIKGKV 118 (346)
T ss_pred hHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHh-C-cceEEEEechH-HHHHHHHHHHhcCcc--ceEEEeecce
Confidence 45555666666656677889999999999999999887 3 45899999866 558888887655443 4589999999
Q ss_pred CCCCCCCCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEE
Q 025144 133 LDLPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
++..+|.+++|+|++-++=+.+ .-+...|-.=-+.|+|||.++
T Consensus 119 Edi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 119 EDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 9987777899999985542222 234556666667999999885
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=84.26 Aligned_cols=159 Identities=24% Similarity=0.269 Sum_probs=108.1
Q ss_pred HHHHHHHHHhh--hCCCCCCeEEEecCCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 54 HRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
...|....... .+...+.+|||.+.|-|..++..+++ ++ +|..++.++..++.|.-+-=..+... .+++++.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilG 192 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILG 192 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecc
Confidence 33444444333 34556889999999999999999887 55 99999999999998876631111111 36899999
Q ss_pred cCCCC--CCCCCcccEEEeccc-ccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhcc
Q 025144 131 DALDL--PFSDCFFDAITMGYG-LRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205 (257)
Q Consensus 131 d~~~~--~~~~~~~D~v~~~~~-l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (257)
|..+. .+++.+||+|+-... +..... -.++.++++++|||||.++-..-++...
T Consensus 193 D~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------- 251 (287)
T COG2521 193 DAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------- 251 (287)
T ss_pred cHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------------------
Confidence 99875 478899999984222 111111 3678999999999999996443222110
Q ss_pred CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCcee
Q 025144 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~ 250 (257)
| +..--...+.+.|+++||.+++...-.+|+.
T Consensus 252 ------y-------rG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~ 283 (287)
T COG2521 252 ------Y-------RGLDLPKGVAERLRRVGFEVVKKVREALGVV 283 (287)
T ss_pred ------c-------ccCChhHHHHHHHHhcCceeeeeehhccceE
Confidence 0 0112346788899999999888776655543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=85.75 Aligned_cols=120 Identities=28% Similarity=0.350 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-c
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D 131 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d 131 (257)
....+.+.+..+....+|..|||-=||||.++....-. +.+++|.|++..|+.-++.+++..+. ....+... |
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~D 254 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLD 254 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCc---CceeEEEecc
Confidence 35567788888999999999999999999999887643 78999999999999999999987653 35555555 9
Q ss_pred CCCCCCCCCcccEEEecccccCcc-----c----HHHHHHHHHhcccCCCEEEEEe
Q 025144 132 ALDLPFSDCFFDAITMGYGLRNVV-----D----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 132 ~~~~~~~~~~~D~v~~~~~l~~~~-----~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+..++++++++|.|++.....--. . ...+|+.+.++||+||.+++..
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999999888899999865433221 1 4677999999999999998764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-09 Score=80.18 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhCC---CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 54 HRIWKRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
.+.|.+++...+.- ..+..|||+|||+|..+..++..+ +...++++|.|+.++..|.++....... +++.+++.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~--g~i~v~~~ 206 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLKLS--GRIEVIHN 206 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHhhc--CceEEEec
Confidence 55666666654432 234479999999999999999987 5789999999999999999998876655 67888866
Q ss_pred cCCCC-----CCCCCcccEEEecccccCccc--------------------------HHHHHHHHHhcccCCCEEEEEee
Q 025144 131 DALDL-----PFSDCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 131 d~~~~-----~~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++.- +...+++|+++++-..-.-+| ...++.-..+.|+|||.+.+...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 55532 244689999998765322211 23345667788999998866543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-09 Score=77.78 Aligned_cols=114 Identities=28% Similarity=0.360 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCce---------EEEEeCChhHHHHHHhhhhhhhhccCCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK---------VIGLDFSKNQLSMASSRQDLVSKACYKN 124 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 124 (257)
...+...++.+....++..|||.-||+|.+.+..+... .... +.|.|+++++++.++++++..+.. ..
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~--~~ 89 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE--DY 89 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C--GG
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccC--Cc
Confidence 44566667777778888999999999999998876664 3334 899999999999999999776543 46
Q ss_pred eeEEEccCCCCCCCCCcccEEEecccccCcc----c----HHHHHHHHHhcccC
Q 025144 125 IEWVEGDALDLPFSDCFFDAITMGYGLRNVV----D----KRKALEESFRVLKP 170 (257)
Q Consensus 125 ~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~----~----~~~~l~~~~~~Lk~ 170 (257)
+.+.+.|+.++++.++++|.|+++.....-. + ...+++.+.+++++
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 8999999999886678999999987766442 1 24457888888888
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=78.52 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=91.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---CCCcccEEEe
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~ 147 (257)
-++|||||=+......-. +-.+|+.||+++ ....+.+.|+.+.|. +.+.||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~----~~fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS----GWFDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCccccc----CceeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEE
Confidence 599999997655444332 234799999976 356688899988765 3678999999
Q ss_pred cccccCcccH---HHHHHHHHhcccCCCE-----EEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 148 GYGLRNVVDK---RKALEESFRVLKPGSR-----ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 148 ~~~l~~~~~~---~~~l~~~~~~Lk~gG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
+.+|.+++++ -.+++++++.|+|+|. |+++-+.. . ...
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-C---------------------------------v~N 156 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-C---------------------------------VTN 156 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch-H---------------------------------hhc
Confidence 9999999864 6689999999999999 76654221 0 012
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.++++.+.|.++++.-||+.++.+...
T Consensus 157 SRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 157 SRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred ccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 357789999999999999998876553
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=85.82 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.+.+...+...++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++... +++.++++|+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~-----~~v~ii~~D~~ 85 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAA-----GNVEIIEGDAL 85 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccC-----CCEEEEEeccc
Confidence 3445556666667778889999999999999999987 358999999999999999887531 58999999999
Q ss_pred CCCCCCCcccEEEeccccc
Q 025144 134 DLPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~ 152 (257)
+.+++ .+|.|+++...+
T Consensus 86 ~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 86 KVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred cCCch--hceEEEEcCCcc
Confidence 87654 489999877654
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=81.06 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=86.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc-CCCeeEEEccCCCCCC-CCCccc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDLPF-SDCFFD 143 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~~~-~~~~~D 143 (257)
+..+ ++||-||.|.|..++.+++.. +..+++.+|+++..++.+++.+....... .++++++..|..++-- ..++||
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 4444 699999999999999999984 56799999999999999999886554222 3799999999987531 234799
Q ss_pred EEEecccccCcc----cHHHHHHHHHhcccCCCEEEEE
Q 025144 144 AITMGYGLRNVV----DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|++...-..=+ --..+++.+++.|+++|+++..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999855433100 1278899999999999999776
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=86.71 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=68.8
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+.+...+...++.+|||+|||+|.++..+++.. .+++++|+++.|++.+++++.. +++.++++|+.++
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~ 99 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcC
Confidence 344556666677788899999999999999999883 3899999999999999887632 5899999999987
Q ss_pred CCCCCcccEEEecccc
Q 025144 136 PFSDCFFDAITMGYGL 151 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l 151 (257)
++++-.+|.|+++...
T Consensus 100 ~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 100 DLSELQPLKVVANLPY 115 (272)
T ss_pred CHHHcCcceEEEeCCc
Confidence 6543225788776553
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=86.35 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=80.8
Q ss_pred CCeEEEecCCCChh----HHHHHHHhC---CCceEEEEeCChhHHHHHHhhhhh-h------------------------
Q 025144 70 GDNVLDVCCGSGDL----SFLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDL-V------------------------ 117 (257)
Q Consensus 70 ~~~vLdiG~G~G~~----~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~-~------------------------ 117 (257)
.-+|...||+||.- +..+.+..+ ...+|+|+|+|+.+++.|++-.-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999963 333444321 135899999999999999874200 0
Q ss_pred ---hhccCCCeeEEEccCCCCCC-CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 118 ---SKACYKNIEWVEGDALDLPF-SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 118 ---~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.......+.|.+.|+.+.++ +.+.||+|+|.+++.+++ ...++++++++.|+|||.|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01112467889999987543 257899999999999995 47889999999999999987653
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.4e-09 Score=80.89 Aligned_cols=100 Identities=18% Similarity=0.023 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.+++||=||+|.|..++.+++. +. +|+.+|+++++++.+++.+..... -..++++++.. +.+ ...++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEE
Confidence 44579999999999999999987 43 999999999999999996644321 11357777652 211 1236899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+... ....+.+.+++.|+|||.++...
T Consensus 145 vDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 145 CLQE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EcCC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 8643 23678899999999999997653
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=87.22 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=91.8
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
...++.+|||++||+|.-+.++++.+++...++++|+++.-++.+++++++.+. .++.+...|...+. ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCe
Confidence 667889999999999999999999987667999999999999999999987654 57888999987653 22467999
Q ss_pred EEecccc------cCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 145 ITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 145 v~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
|++.... ..-++ ..++|.+..+.|||||.|+..+.+.....
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eE 249 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREE 249 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHH
Confidence 9953332 22121 25678999999999999988876654433
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-09 Score=79.45 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCChh----HHHHHHHh---CC-CceEEEEeCChhHHHHHHhhh------hhhh----------------
Q 025144 69 TGDNVLDVCCGSGDL----SFLLSEQV---GS-QGKVIGLDFSKNQLSMASSRQ------DLVS---------------- 118 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~----~~~l~~~~---~~-~~~v~~~D~s~~~~~~a~~~~------~~~~---------------- 118 (257)
+.-+|...||++|.- +..+.+.. .+ ..+++|+|+|+.+++.|++-. ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456999999999963 33334411 11 359999999999999998621 1000
Q ss_pred ---hccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEE
Q 025144 119 ---KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 119 ---~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.....++.|.+.|+.+.+.+.+.||+|+|.+++-+++. ..++++.+++.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01124788999999884445688999999999999964 588899999999999999875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-08 Score=77.63 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh---hh---------------------------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---VS--------------------------- 118 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~--------------------------- 118 (257)
...+||--|||.|+++-.++.. +..+.+.|.|--|+-..+-.+.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3569999999999999999977 68999999999886554432211 00
Q ss_pred -------hccCCCeeEEEccCCCCCCCC---CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 119 -------KACYKNIEWVEGDALDLPFSD---CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 119 -------~~~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
.....++.+..+|+.+.-.++ ++||+|+..+.+...++....++.|.++|||||..+=..+-.-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh----- 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYH----- 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCcccc-----
Confidence 001235667777777654333 79999999988888889999999999999999976432211000
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
.... .... ...--++.+|+..++++.||++++...
T Consensus 208 -------------~~~~-~~~~-------~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 -------------FEPM-SIPN-------EMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -------------CCCC-CCCC-------CcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 0000 000135889999999999999987655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=86.95 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=73.3
Q ss_pred CCeEEEecCCCChhHHHHHHH---hCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+..|||+|||+|-++...++. .+...+|+++|-++.+....+++++..+.. ++++++++|++++..+ +++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~--~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG--DKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT--TTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC--CeEEEEeCcccCCCCC-CceeEEE
Confidence 568999999999998766554 122459999999998887776665444433 6899999999998765 5899999
Q ss_pred ec--ccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 147 MG--YGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 147 ~~--~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+= +.+..-+-....|....+.|||||.++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 72 222222334567888999999998874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=85.33 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+...+.......++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++...+. .++++++++|+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence 345556666677788899999999999999999876 35899999999999999988764321 1589999999987
Q ss_pred CCCCCCcccEEEeccccc
Q 025144 135 LPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~ 152 (257)
.+. ..+|.|+++...+
T Consensus 97 ~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 97 TEF--PYFDVCVANVPYQ 112 (294)
T ss_pred hcc--cccCEEEecCCcc
Confidence 654 3689988765544
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=74.97 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhh----CCCCCC-eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE
Q 025144 54 HRIWKRMAVSWS----GAKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128 (257)
Q Consensus 54 ~~~~~~~~~~~~----~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 128 (257)
.+.|.+.+..-+ ...... +++|||+|.|..++.++=.+ |..+++.+|.+..-+...+......+. .|++++
T Consensus 28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~ 103 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVI 103 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEE
Confidence 455555554422 222333 89999999999999998775 788999999999888888877766654 589999
Q ss_pred EccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 129 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 129 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+..+++ ....++||+|++..+ .....+++-+...+++||.+++.-
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Eeeecc-cccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 999998 434688999998664 356788999999999999987753
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=77.89 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=94.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+.+..+.....-...||||||- -...-.+++...|.++|..+|.+|..+..++..+..... ....++++|+.+
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~---g~t~~v~aD~r~ 132 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR---GRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT---SEEEEEE--TT-
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC---ccEEEEeCCCCC
Confidence 333333333333556899999994 456778888888999999999999999999888765421 238899999998
Q ss_pred CC-----------CCCCcccEEEecccccCcc---cHHHHHHHHHhcccCCCEEEEEeecCCCchhH-HHHHHHHHhhhh
Q 025144 135 LP-----------FSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVV 199 (257)
Q Consensus 135 ~~-----------~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 199 (257)
.. +.-+..=.+++..++|+++ ++..+++.++..|.||+.|++........+.. ......+...
T Consensus 133 p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~-- 210 (267)
T PF04672_consen 133 PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQA-- 210 (267)
T ss_dssp HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcC--
Confidence 42 1112333577788899885 58999999999999999999988776544332 2222222211
Q ss_pred hhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 200 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
.....+.+.+++..+|. ||+.++
T Consensus 211 -----------------~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 211 -----------------GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -----------------CS----B-HHHHHHCCT--TSEE-T
T ss_pred -----------------CCCceecCHHHHHHHcC--CCccCC
Confidence 01124669999999987 888765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=82.47 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
...+||.||+|.|..+..+++. .+..+++++|+++++++.+++.+..... -..++++++.+|.... ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4569999999999999999876 2456899999999999999988753211 1126899999999874 23357899999
Q ss_pred ecccccCc-cc------HHHHHH-HHHhcccCCCEEEEE
Q 025144 147 MGYGLRNV-VD------KRKALE-ESFRVLKPGSRISVL 177 (257)
Q Consensus 147 ~~~~l~~~-~~------~~~~l~-~~~~~Lk~gG~l~~~ 177 (257)
+... ... .. -..+++ .+++.|+|||++++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8632 111 00 245677 899999999998654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=80.10 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++.. .+++.++++|+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence 3445566666677788899999999999999999883 4699999999999999887643 1689999999998
Q ss_pred CCCCCCccc---EEEeccccc
Q 025144 135 LPFSDCFFD---AITMGYGLR 152 (257)
Q Consensus 135 ~~~~~~~~D---~v~~~~~l~ 152 (257)
.+++ .+| +|+++..++
T Consensus 87 ~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred CChh--HcCCcceEEEcCChh
Confidence 7654 466 777665543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-09 Score=76.50 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=83.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhhhh-----hc--cCCCeeEEEccCCCCCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVS-----KA--CYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~-----~~--~~~~~~~~~~d~~~~~~~ 138 (257)
+.|+.+.||+|+|+|.++..++..++. +...+|||.-++.++.+++++.... .. ...++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 678999999999999999998877643 3345999999999999999876533 11 124788999999987777
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+||.|.+.... ....+++...|++||.+++..
T Consensus 160 ~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 7899999997543 344556778889999998753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-08 Score=68.39 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=73.3
Q ss_pred HHHHhhhCCCCCCeEEEecCCCCh-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
+.+...+....+.+|||||||+|. .+..|.+. +.+|+++|+++..++.++++ .+.++.+|+.+.++
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 334444444456799999999996 77777654 68999999999998888664 46899999998653
Q ss_pred C-CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 138 S-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 138 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
. -+.+|+|++... -+++...+.++.+ +-|.-+++..+....
T Consensus 73 ~~y~~a~liysirp---p~el~~~~~~la~--~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSIRP---PRDLQPFILELAK--KINVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEeCC---CHHHHHHHHHHHH--HcCCCEEEEcCCCCC
Confidence 2 356999998553 2244444444444 335667776655433
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=84.78 Aligned_cols=108 Identities=10% Similarity=0.202 Sum_probs=78.4
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCC
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDC 140 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 140 (257)
..++...++.+|||++||+|.++..++.. +.+++++|.++.+++.++++.+..+. .++.++.+|+.+... ..+
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQMS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhcCC
Confidence 33444345679999999999999999854 46899999999999999998865542 479999999976421 124
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+||+|++.-.-... ...++..+. .++|++.+++..
T Consensus 300 ~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 69999987653322 244455554 468888777654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=88.51 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~ 146 (257)
.+..+||||||.|.++..++.. +|...++|+|+....+..+.++....+ ..|+.++..|+..+ .++++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 4668999999999999999999 588999999999998888877765443 26888888887543 26778999999
Q ss_pred ecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++.--|... -..++..+++.|||||.+.+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9887666532 3778999999999999997754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-08 Score=75.83 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCeEEEecCCCCh----hHHHHHHHhC----CCceEEEEeCChhHHHHHHhhh-h------hhh-----------h----
Q 025144 70 GDNVLDVCCGSGD----LSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQ-D------LVS-----------K---- 119 (257)
Q Consensus 70 ~~~vLdiG~G~G~----~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~-~------~~~-----------~---- 119 (257)
.-+|...||+||. ++..+.+..+ ...+|+++|+|..+++.|+.-. . ..+ .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 4455555542 2469999999999999998532 1 000 0
Q ss_pred ----ccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEe
Q 025144 120 ----ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 120 ----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+.|.+.|+...+...+.||+|+|-+++-+++. ..++++.++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0113567777887765534577999999999999964 6788999999999999998753
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-08 Score=73.60 Aligned_cols=105 Identities=21% Similarity=0.154 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-C-CC-Cccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F-SD-CFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~-~~~D 143 (257)
-.+.+|||++||+|.++..++.+ + ..+++++|.++.+++.++++++..+.. .++.+++.|+... . . .. ..+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-g-a~~v~~vE~~~~a~~~~~~N~~~~~~~--~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-G-AKVAFLEEDDRKANQTLKENLALLKSG--EQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCc--ccEEEEehhHHHHHHHhhccCCCce
Confidence 35779999999999999999987 2 248999999999999999988765432 4688999999542 1 1 12 2478
Q ss_pred EEEecccccCcccHHHHHHHHH--hcccCCCEEEEE
Q 025144 144 AITMGYGLRNVVDKRKALEESF--RVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~ 177 (257)
+|++...+.. .....++..+. .+|+++|.+++-
T Consensus 124 vv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFN-GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 8887665543 23344444443 367888877553
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.2e-08 Score=77.24 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.+|||+|+|+|..+..+.+.++...+++++|.|+.|++.++......... ...........+. .+....|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN--RNAEWRRVLYRDF-LPFPPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc--ccchhhhhhhccc-ccCCCCcEEEEe
Confidence 4569999999999888777777654568999999999999998876543211 1111111111111 111234999999
Q ss_pred ccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 149 YGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 149 ~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
++|..+++ ...+++++.+.+.+ .|++++...+..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 99998875 45556666665554 888888776553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-08 Score=75.20 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCC-CCCC-cccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLP-FSDC-FFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~-~~~~-~~D~v 145 (257)
.+.+||-||.|.|..+..+.+. .+..+++++|+++.+++.+++.+..... ...++++++..|...+- -..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 5679999999999999999876 3456999999999999999987654321 12368999999997642 1233 89999
Q ss_pred EecccccCccc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++...-..-+. -..+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 97544321111 2678999999999999998765
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=81.73 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=77.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...++..+.+.++..++|++||.|..+..+++.+++..+|+|+|.++++++.+++++.. . .++.++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHH
Confidence 445566666777888999999999999999999975568999999999999999988754 1 68999999998763
Q ss_pred --CCCC--cccEEEecccccCc--ccHHHHH
Q 025144 137 --FSDC--FFDAITMGYGLRNV--VDKRKAL 161 (257)
Q Consensus 137 --~~~~--~~D~v~~~~~l~~~--~~~~~~l 161 (257)
.+.+ ++|.|++......+ ++..+-+
T Consensus 82 ~~l~~~~~~vDgIl~DLGvSs~Qld~~~RGF 112 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLGVSSPQLDDAERGF 112 (296)
T ss_pred HHHHcCCCccCEEEECCCccccccCCCcCCc
Confidence 2222 79999987665433 4444443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=80.85 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
++..++.+.... .+++||++-|=||.++.+.+.. ++ +|+.+|.|...++.|+++++..+... .+..++++|+
T Consensus 205 qR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~-~~~~~i~~Dv 277 (393)
T COG1092 205 QRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDV 277 (393)
T ss_pred hHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCc-cceeeehhhH
Confidence 444444444443 3889999999999999998865 55 99999999999999999987654321 4689999999
Q ss_pred CCCC----CCCCcccEEEeccccc---------CcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 133 LDLP----FSDCFFDAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 133 ~~~~----~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.++- -...+||+|++...-. -..+...++..+.++|+|||.+++.....
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8752 3345899999843311 11245778999999999999998876443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-07 Score=70.01 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=89.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
.++...+.+.|+.+|+|-|.|+|.++..+++.++|..+++-+|+...-.+.|.+.++..+.+ +++.+..-|+...-+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~--~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG--DNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC--cceEEEEeecccCCcc
Confidence 34566778999999999999999999999999999899999999998888888888776655 7899999999875443
Q ss_pred --CCcccEEEecccccCcccHHHHHHHHHhcccCCCE
Q 025144 139 --DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 173 (257)
Q Consensus 139 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~ 173 (257)
...+|.|++ .++.|-..+-.+.++||.+|.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ccccccceEEE-----cCCChhhhhhhhHHHhhhcCc
Confidence 467888876 455667778888889998774
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=76.00 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=83.2
Q ss_pred HHHHHHHHhhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 55 RIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
+..++.+..++.. -++.++||+-||+|.++...+.+ + -.+|+.+|.++..+...+++++..+.. .++.++..|.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-G-A~~v~fVE~~~~a~~~i~~N~~~l~~~--~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-G-AKSVVFVEKNRKAIKIIKKNLEKLGLE--DKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G--GGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHHhCCC--cceeeeccCH
Confidence 3445555555543 36889999999999999998887 2 348999999999999999999876644 4688999986
Q ss_pred CCC-C---CCCCcccEEEecccccCcccHHHHHHHHH--hcccCCCEEEEEe
Q 025144 133 LDL-P---FSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~-~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~ 178 (257)
... . ....+||+|++......-.....++..+. .+|+++|.+++-.
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 542 1 13678999999776554322466777776 7899999886544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=73.23 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCeEEEecCCCC-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh-hhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 70 GDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-LVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
+.+|+=||||+= ..++.+++...++..++++|.+++..+.+++..+ ..+.+ .++.++.+|..+...+-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~--~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS--KRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc--CCeEEEecchhccccccccCCEEEE
Confidence 359999999974 4455566555567789999999999999998776 33333 6899999999876544467999998
Q ss_pred cccccCc-ccHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRNV-VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
......- .+..+++.++.+.++||..+++-
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7655522 46789999999999999988765
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-09 Score=80.52 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.++||+|+|.|..+..++..+ .+|++.+.|..|..+.+++ +..++... +..-.+-+||+|.|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----------~ynVl~~~--ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----------NYNVLTEI--EWLQTDVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----------CCceeeeh--hhhhcCceeehHHHHH
Confidence 4699999999999999988664 5899999999998887764 23332211 1111235699999999
Q ss_pred cccCcccHHHHHHHHHhcccC-CCEEEEE
Q 025144 150 GLRNVVDKRKALEESFRVLKP-GSRISVL 177 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~-gG~l~~~ 177 (257)
.+....++-++|+.++.+|+| +|.+++.
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 999888999999999999999 8887654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=73.46 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCC-----CCCCCCc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALD-----LPFSDCF 141 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~-----~~~~~~~ 141 (257)
.++.+|||+|||||.++..+++. + ..+|+++|+++.|+....+.- +++ .+...|+.. ...+-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCcee
Confidence 46779999999999999999986 2 358999999998887622211 222 122233332 2112235
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+++++. ...+..+.+.|++ |.+++.
T Consensus 144 ~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 144 FDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 77766644 3357889999999 776543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=69.87 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=70.7
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+-..++.-.+.+++|+|||.|.++....-. ....+.|+|+++++++.+.++..+.. -++.+.++|+.++.+..+
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence 334445556889999999999999544322 34589999999999999999987765 477999999999887789
Q ss_pred cccEEEecccccCc
Q 025144 141 FFDAITMGYGLRNV 154 (257)
Q Consensus 141 ~~D~v~~~~~l~~~ 154 (257)
.||.++.+..+..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 99999998877644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.9e-09 Score=81.21 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=95.1
Q ss_pred CCCCeEEEecCCCChhHH-HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-------------cc------------
Q 025144 68 KTGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------AC------------ 121 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~------------ 121 (257)
.++.++||||||+--.-. ...+. -.+++..|+++.-++..++-++..+. .+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 346799999999854322 22222 24899999999888766654432110 00
Q ss_pred CCCe-eEEEccCCCCC-CCC-----CcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 122 YKNI-EWVEGDALDLP-FSD-----CFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 122 ~~~~-~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
...+ .++..|+.+.+ +.+ .+||+|++.+++... ++..+.++++.++|||||.|+++.......-...
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG-- 209 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG-- 209 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET--
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC--
Confidence 0123 37788988754 222 359999999998866 3467789999999999999988765432211000
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec----CceeEEEeeeC
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS----GGLMGNLVATR 257 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~----~g~~~~~~~~k 257 (257)
...+. .-..+.+.+++.|+++||++.+..... ...+-.++|||
T Consensus 210 ------------------~~~F~------~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 210 ------------------GHKFP------CLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ------------------TEEEE---------B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ------------------CEecc------cccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 00010 013588999999999999998877411 11244566665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.8e-08 Score=79.78 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.+|||++||+|..+..++... +..+|+++|+++.+++.++++++..+. .++.+.+.|+..+....+.||+|++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 4689999999999999998774 235899999999999999998865442 456789999866321146799999854
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
. ..+..++....+.+++||.+++.
T Consensus 134 -~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 -F---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -C---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 2 33467777867778999999887
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.9e-07 Score=66.82 Aligned_cols=107 Identities=23% Similarity=0.197 Sum_probs=76.2
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 141 (257)
+.+.++.+||-+|+.+|....++++-.++...|+++|.|+......-...+.. +|+--+..|+.... ..-+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccccc
Confidence 56788999999999999999999999988889999999996654443332221 79999999998642 22357
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+|++.-. ..++..-++.++...||+||.++++-
T Consensus 144 VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999987432 23345667888889999999987763
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.1e-07 Score=68.37 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhhhC----CCC-CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeE
Q 025144 53 QHRIWKRMAVSWSG----AKT-GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127 (257)
Q Consensus 53 ~~~~~~~~~~~~~~----~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 127 (257)
..+.|.+.++..+. ... +.+++|||+|.|..+..++=. .|..+++.+|...+-+...+...++.+. +|+++
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i 121 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL---ENVEI 121 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEE
Confidence 46677777766432 222 579999999999999998844 4777899999988888777777666554 68999
Q ss_pred EEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 128 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+++.++++......||+|++..+ .+...+.+-+...+|+||.+++
T Consensus 122 ~~~RaE~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 122 VHGRAEEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehhhHhhcccccccCcEEEeehc----cchHHHHHHHHHhcccCCcchh
Confidence 99999987532112999998653 3466778888899999998753
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-07 Score=76.30 Aligned_cols=150 Identities=22% Similarity=0.293 Sum_probs=92.3
Q ss_pred hhHHHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh------CCCceEEEE
Q 025144 29 SERQELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV------GSQGKVIGL 100 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~~ 100 (257)
+.+.++|+..-..+....... .+--.....+.+..++...++.+|+|.+||+|.+...+.+.+ ....+++|+
T Consensus 4 d~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ 83 (311)
T PF02384_consen 4 DILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGI 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEee
Confidence 345566666554442211110 111244556677777777888899999999999998887742 246799999
Q ss_pred eCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-C-CCcccEEEecccccCc--cc-------------------H
Q 025144 101 DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-S-DCFFDAITMGYGLRNV--VD-------------------K 157 (257)
Q Consensus 101 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~D~v~~~~~l~~~--~~-------------------~ 157 (257)
|+++.++..++.++.-.+.. ..+..+...|....+. . ...||+|+++..+... .+ -
T Consensus 84 ei~~~~~~la~~nl~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (311)
T PF02384_consen 84 EIDPEAVALAKLNLLLHGID-NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE 162 (311)
T ss_dssp ES-HHHHHHHHHHHHHTTHH-CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH
T ss_pred cCcHHHHHHHHhhhhhhccc-cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchh
Confidence 99999999888765332221 1235688888765432 2 4789999997665433 10 1
Q ss_pred HHHHHHHHhcccCCCEEEEEee
Q 025144 158 RKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 158 ~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..++.++.+.|++||.+.++.+
T Consensus 163 ~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 163 YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhHHHHHhhcccccceeEEec
Confidence 2478899999999999876653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-07 Score=73.77 Aligned_cols=134 Identities=21% Similarity=0.300 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
++.-.......+...++.+|||++++.|.=+.++++...+ +..|+++|.++.-+...++++++.+. .++.+...|.
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~ 217 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDA 217 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccc
Confidence 3444455556788899999999999999999999998754 34569999999999999999988765 4678888887
Q ss_pred CCCC---CCCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 133 LDLP---FSDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 133 ~~~~---~~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
...+ ...++||.|++... +..-++ ..++|....+.|||||.|+..+.+.......
T Consensus 218 ~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 218 RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 6543 22235999996433 321122 3567999999999999999888776444433
Q ss_pred HHH
Q 025144 188 TAI 190 (257)
Q Consensus 188 ~~~ 190 (257)
...
T Consensus 298 ~vV 300 (355)
T COG0144 298 EVV 300 (355)
T ss_pred HHH
Confidence 333
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=73.88 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
....+.+.......++..|||||+|.|.++..|++. ...|+++|+++.+++..+++.... .+++++++|+..
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~-----~n~~vi~~DaLk 87 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAPY-----DNLTVINGDALK 87 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcccc-----cceEEEeCchhc
Confidence 334566677777788889999999999999999988 467999999999999999887522 699999999999
Q ss_pred CCCCCC-cccEEEecccc
Q 025144 135 LPFSDC-FFDAITMGYGL 151 (257)
Q Consensus 135 ~~~~~~-~~D~v~~~~~l 151 (257)
.+++.- .++.|+++-..
T Consensus 88 ~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 88 FDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CcchhhcCCCEEEEcCCC
Confidence 876532 57888776543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=72.78 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=70.2
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+..-..+.+...|||||.|||.++..+++. +.+|+++|.++.|+...+++....+.+ ...+++.+|+...+.|
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~--~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKS--GKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCcc--ceeeEEecccccCCCc
Confidence 33444456788899999999999999999987 679999999999999999998766543 6799999999887643
Q ss_pred CCcccEEEeccc
Q 025144 139 DCFFDAITMGYG 150 (257)
Q Consensus 139 ~~~~D~v~~~~~ 150 (257)
.||.++++..
T Consensus 123 --~fd~cVsNlP 132 (315)
T KOG0820|consen 123 --RFDGCVSNLP 132 (315)
T ss_pred --ccceeeccCC
Confidence 5899987544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-07 Score=67.02 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=90.6
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
+..++.....+++||||.=||..+..++..++.+.+|+++|+++...+.+.+..+..+.. ..++++++...+.
T Consensus 65 l~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~--~KI~~i~g~a~esLd~l~ 142 (237)
T KOG1663|consen 65 LQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD--HKITFIEGPALESLDELL 142 (237)
T ss_pred HHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc--ceeeeeecchhhhHHHHH
Confidence 333444456679999999999999999999988899999999999999998777655544 6799999988753
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..+.++||.++..+ +-.+....++++.+++|+||.|++-...+
T Consensus 143 ~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 143 ADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred hcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEecccc
Confidence 13468899998643 23345578899999999999998765333
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=71.53 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|+|+.||.|.++..+++. .....|+++|++|.+++.++++++..+.. .++..+++|..++.. .+.+|-|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~--~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE--NRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T--TTEEEEES-GGG----TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC--CeEEEEcCCHHHhcC-ccccCEEE
Confidence 567889999999999999999985 35678999999999999999988765544 578999999988754 68899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
+...-. ...+|..+.+.+++||.+
T Consensus 175 m~lp~~----~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 175 MNLPES----SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp E--TSS----GGGGHHHHHHHEEEEEEE
T ss_pred ECChHH----HHHHHHHHHHHhcCCcEE
Confidence 865422 235677788888988876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-08 Score=72.12 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=78.4
Q ss_pred CCCCCeEEEecCCCChh-HHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCccc
Q 025144 67 AKTGDNVLDVCCGSGDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFD 143 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 143 (257)
...+.+|||+|+|--.+ +..++.. .+..+|...|-+.+.++..++...........++.....+.... .....+||
T Consensus 27 ~~rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCccc
Confidence 33467999999995444 4444444 46789999999999999988876443222234454555544432 13456899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+|++...+..-+-...+.+.|+..|+|.|.-++..+.
T Consensus 106 iIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 106 IILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 9999887765555678889999999999986665433
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-07 Score=73.99 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=74.9
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+... +.+|||++||+|.++..+++.. .+|+++|.++.+++.++++++..+. .++.++.+|+.+.-
T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~l 267 (362)
T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHHH
Confidence 334444444322 3579999999999999888763 4899999999999999998865442 48999999987631
Q ss_pred --CC--------------CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FS--------------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~--------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.. ..+||+|++.-.=. .-...+++.+.+ +++.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 10 12589999866521 112445555544 666666543
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.8e-08 Score=79.62 Aligned_cols=111 Identities=27% Similarity=0.335 Sum_probs=93.6
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++..++|+|||.|.....+... ....++++|.++..+..+.......... ....++..|+...+++++.||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~--~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLD--NKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhh--hhcceehhhhhcCCCCccccCcE
Confidence 4456678999999999999998876 4679999999998888877765544433 34455888999989999999999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+..+.+|.++....+.+++++++|||.++..++.
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999999999999999999999876544
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-07 Score=67.69 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=85.8
Q ss_pred EEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccccc
Q 025144 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 152 (257)
|.||||..|.+...|++. +.-..++++|+++..++.|+++++..+.. .++.+..+|..+.-.+.+..|.|+...+=.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~--~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE--DRIEVRLGDGLEVLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T--TTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc--ccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence 689999999999999998 44458999999999999999999876654 689999999876322223378988765422
Q ss_pred CcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHH
Q 025144 153 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 232 (257)
Q Consensus 153 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (257)
. -...+|.+....++....+++.- ......+++.|
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP-------------------------------------------~~~~~~LR~~L 112 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQP-------------------------------------------NTHAYELRRWL 112 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEE-------------------------------------------SS-HHHHHHHH
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeC-------------------------------------------CCChHHHHHHH
Confidence 1 24556666666666655665532 12457889999
Q ss_pred HHcCceeeEEeee
Q 025144 233 LEIGFSRAKHYEL 245 (257)
Q Consensus 233 ~~~Gf~~~~~~~~ 245 (257)
.+.||.+++-.-.
T Consensus 113 ~~~gf~I~~E~lv 125 (205)
T PF04816_consen 113 YENGFEIIDEDLV 125 (205)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHCCCEEEEeEEE
Confidence 9999998875543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=76.31 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+...+..++...+ .+|||++||+|.++..+++.. .+|+++|.++++++.++++.+..+. .++.++.+|+.+
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~ 256 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHH
Confidence 334444444544333 479999999999999998773 4899999999999999998865442 479999999876
Q ss_pred CCCC----------C------CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 LPFS----------D------CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 ~~~~----------~------~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+... . ..||+|++.-. ...-...+++.+.+ |++.+++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEc
Confidence 3210 1 13799988654 11112445555543 677776653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.9e-07 Score=65.92 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc
Q 025144 54 HRIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131 (257)
Q Consensus 54 ~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 131 (257)
.+..++.+..++.. -.+.++||+-+|+|.++...+.+ + -..++.+|.+.......+++++..+.. .+..++..|
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-G-A~~~~~vE~~~~a~~~l~~N~~~l~~~--~~~~~~~~d 101 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-G-AARVVFVEKDRKAVKILKENLKALGLE--GEARVLRND 101 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-C-CceEEEEecCHHHHHHHHHHHHHhCCc--cceEEEeec
Confidence 44566777777754 57889999999999999999887 2 358999999999999999998776543 578888888
Q ss_pred CCCC--CCC-CCcccEEEeccccc-CcccHHHHHHH--HHhcccCCCEEEEEe
Q 025144 132 ALDL--PFS-DCFFDAITMGYGLR-NVVDKRKALEE--SFRVLKPGSRISVLD 178 (257)
Q Consensus 132 ~~~~--~~~-~~~~D~v~~~~~l~-~~~~~~~~l~~--~~~~Lk~gG~l~~~~ 178 (257)
.... ... .++||+|++...++ .+-+....+.. -..+|+|+|.+++-.
T Consensus 102 a~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 102 ALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 8743 111 23599999988777 12222333333 457899999997643
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.1e-07 Score=71.32 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=103.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhh--hhh--hhccCCCeeEEEccCCCCC-CCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ--DLV--SKACYKNIEWVEGDALDLP-FSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~--~~~--~~~~~~~~~~~~~d~~~~~-~~~~~~ 142 (257)
+.-.+||-+|+|.|...+.+.+. +.-.+++.+|++|+|++.++++. ... +.-..++++++..|..++- -..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34569999999999999999887 22569999999999999998432 211 1112368999999998753 334689
Q ss_pred cEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 143 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 143 D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
|.|+....-..-+. -.++..-+.+.|+++|.+++..-..-..+ +
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp------------------------~------- 415 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP------------------------R------- 415 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC------------------------c-------
Confidence 99997543222221 15567788999999999987642221100 0
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeee--cCceeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYEL--SGGLMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~--~~g~~~~~~~~k 257 (257)
.--.+.+-++++||...-.+.. .+|.|+..+|.+
T Consensus 416 ------vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 416 ------VFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred ------eeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 0113456788999987755543 577788877653
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-08 Score=82.58 Aligned_cols=94 Identities=28% Similarity=0.344 Sum_probs=66.8
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEE-----eCChhHHHHHHhhhhhhhhccCCCeeEEEc--cCCCCCCCCCccc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGL-----DFSKNQLSMASSRQDLVSKACYKNIEWVEG--DALDLPFSDCFFD 143 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~-----D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~D 143 (257)
..+||+|||+|.++.++.++ .|+.+ |..+..++.|.++- +-...+ --..+|+++++||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG----------vpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG----------VPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC----------cchhhhhhccccccCCccchh
Confidence 48899999999999999876 23333 33344555555441 212212 2345789999999
Q ss_pred EEEecccccCcc-cHHHHHHHHHhcccCCCEEEEEee
Q 025144 144 AITMGYGLRNVV-DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 144 ~v~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|.|..++..+. +-..+|-++.|+|+|||+++....
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 999988877663 335678899999999999987653
|
; GO: 0008168 methyltransferase activity |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.7e-07 Score=66.14 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=98.5
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH----HHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
++.+.++.++.+|+|+=.|.|++++.+...+++...|+++-..+.. .+..+.+.... .....|.+.+..+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~-e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR-EPVYANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh-hhhhhhhhhhCCcccccC
Confidence 3445578899999999999999999999998888888776653321 11111110000 001135555555555554
Q ss_pred CCCCcccEEEecccccCc-------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCch
Q 025144 137 FSDCFFDAITMGYGLRNV-------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 209 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (257)
+.+..|++......|.+ .....+...+++.|||||.+++.++..........
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-------------------- 177 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-------------------- 177 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh--------------------
Confidence 34567777754433322 24678899999999999999999877544222111
Q ss_pred hhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEe
Q 025144 210 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
....++.+...+....+.+||+..-..
T Consensus 178 -------t~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 178 -------TITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred -------hhhhcccChHHHHHHHHhhcceeeeee
Confidence 111245678888899999999866433
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-07 Score=71.47 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++..++++... ..+.+|||+-|=||.++...+.. .-.+|+.+|.|..+++.+++++...+.. ..++.+++.|+.
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf 184 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVF 184 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HH
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHH
Confidence 44555555544 34789999999999999987654 2238999999999999999998755432 147899999987
Q ss_pred CCC---CCCCcccEEEecccccC------cccHHHHHHHHHhcccCCCEEEEEee
Q 025144 134 DLP---FSDCFFDAITMGYGLRN------VVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 134 ~~~---~~~~~~D~v~~~~~l~~------~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+.- -..++||+|++...-.. ..+...++..+.++|+|||.|++...
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 631 12468999998433111 12457789999999999999866543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-07 Score=67.71 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=68.4
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh------hccCCCeeEEEccCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS------KACYKNIEWVEGDALD 134 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~d~~~ 134 (257)
+++.+++.++...+|||||.|......+-.. +-....|||+.+...+.|+....... .....++.+.++|+.+
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 4455678889999999999999988777664 33459999999998887775433211 0112467888999876
Q ss_pred CCCC---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 135 LPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 135 ~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
.+.. -...|+|++++..- -++....|.++...||+|.+++.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 4311 13479999988643 23556667778888998888754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=64.51 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=66.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.++||+||++|.++..++++ +..|+++|..+ |-...... +++...+.|......+.+.+|+++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~L~~~---------~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQSLMDT---------GQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHhhhCC---------CCEEEEeccCcccCCCCCCCCEEE
Confidence 367889999999999999999987 56999999654 32222111 688888888877543367899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~g 171 (257)
|..+ ..|.++.+-+.+.|..|
T Consensus 276 cDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred Eecc----cCHHHHHHHHHHHHhcC
Confidence 8664 34778888888888765
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-05 Score=59.71 Aligned_cols=106 Identities=37% Similarity=0.624 Sum_probs=73.7
Q ss_pred EEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CCCCC-CcccEEEecc
Q 025144 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFSD-CFFDAITMGY 149 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~v~~~~ 149 (257)
++|+|||+|... .+.........++++|+++.++..+...... ... ..+.+...|... .++.. ..+|++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL--GLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC--CceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 999999999976 3433321114789999999999985444322 110 116788888776 56655 489999 544
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
...+..+....+..+.+.++|+|.+++.......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4443333888999999999999999887765443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-06 Score=70.90 Aligned_cols=117 Identities=23% Similarity=0.346 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
..+.+...+..++...++.+++|+=||.|.++..+++. ..+|+|+|+++++++.|+++++..+. .|+.++.++.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~a 350 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDA 350 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCH
Confidence 45566777778888888889999999999999999965 47999999999999999999877654 5799999999
Q ss_pred CCCCCC---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDLPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.... ...+|.|+..-.=.-. ...+++.+. .++|..++++..
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGA--DREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCC--CHHHHHHHH-hcCCCcEEEEeC
Confidence 986422 2478999974321111 124454444 456777777654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-06 Score=73.91 Aligned_cols=123 Identities=19% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHh---C-------------------------------------
Q 025144 54 HRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQV---G------------------------------------- 92 (257)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~------------------------------------- 92 (257)
.+.+...++...+. .++..++|..||+|.+.+..+... .
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34445555555555 567899999999999998776521 0
Q ss_pred -CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC--CCcccEEEecccccCc----ccHHHHHHHHH
Q 025144 93 -SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGYGLRNV----VDKRKALEESF 165 (257)
Q Consensus 93 -~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~~ 165 (257)
...+++|+|+++.+++.|++++...+.. ..+.+.++|+.+++.+ .+++|+|+++.....- .+...+.+.+.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~--~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVA--ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1136999999999999999999876543 4689999999887543 3579999998775432 23344544444
Q ss_pred hccc---CCCEEEEEe
Q 025144 166 RVLK---PGSRISVLD 178 (257)
Q Consensus 166 ~~Lk---~gG~l~~~~ 178 (257)
+.++ +|+.+++..
T Consensus 332 ~~lk~~~~g~~~~llt 347 (702)
T PRK11783 332 RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHhCCCCeEEEEe
Confidence 4444 788876654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=69.33 Aligned_cols=125 Identities=22% Similarity=0.368 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++.-.......+...++.+|||++++.|.-+.++++.+++..++++.|+++.-+...+++++..+. .++.+...|..
T Consensus 70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---~~v~~~~~D~~ 146 (283)
T PF01189_consen 70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---FNVIVINADAR 146 (283)
T ss_dssp HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHH
T ss_pred cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---ceEEEEeeccc
Confidence 333334445556788899999999999999999999987678999999999999999998877664 57888877776
Q ss_pred CCC--CCCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcc----cCCCEEEEEeecC
Q 025144 134 DLP--FSDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVL----KPGSRISVLDFNK 181 (257)
Q Consensus 134 ~~~--~~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L----k~gG~l~~~~~~~ 181 (257)
... .....||.|++... +..-++ ..++|++..+.+ ||||.++..+.+.
T Consensus 147 ~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 147 KLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 641 22346999996332 222222 256799999999 9999998887553
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-06 Score=66.33 Aligned_cols=107 Identities=25% Similarity=0.366 Sum_probs=85.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+|.+|+|+=||-|.+++.++.. + ..+|+++|++|.+++.++++++..+.. ..+..+++|.......-+.+|-|++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g-~~~V~A~diNP~A~~~L~eNi~LN~v~--~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-G-RPKVYAIDINPDAVEYLKENIRLNKVE--GRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-C-CceEEEEecCHHHHHHHHHHHHhcCcc--ceeeEEeccHHHhhhccccCCEEEe
Confidence 44889999999999999999987 2 334999999999999999998765543 4589999999987654478999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
...- +...++....+.+++||.+...+....
T Consensus 263 ~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 263 GLPK----SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CCCC----cchhhHHHHHHHhhcCcEEEEEeccch
Confidence 7643 345677778888888999977765543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-06 Score=66.89 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.....+.+...+...++..|+|+|+|+|.++..|++. ..+++++|.++.+.+..++++... ++++++.+|+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~~~-----~~~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFASN-----PNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCTTC-----SSEEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhhhc-----ccceeeecchh
Confidence 4455666777777778899999999999999999988 379999999999999999877522 69999999999
Q ss_pred CCCCCC---CcccEEEecccccCcccHHHHHHHHHh
Q 025144 134 DLPFSD---CFFDAITMGYGLRNVVDKRKALEESFR 166 (257)
Q Consensus 134 ~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~ 166 (257)
++.... +....|+.+... ++. ..++.++..
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy-~is--~~il~~ll~ 119 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY-NIS--SPILRKLLE 119 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG-TGH--HHHHHHHHH
T ss_pred ccccHHhhcCCceEEEEEecc-cch--HHHHHHHhh
Confidence 876443 345566665443 332 345555554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-06 Score=61.45 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=76.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 138 (257)
+.++.+|+|+|+-+|.++..+++..+++..|+++|+.|-- ..+++.++++|+...+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4678899999999999999999998777779999986621 1267999999998753 33
Q ss_pred CCcccEEEecccc--------cCcc--c-HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 139 DCFFDAITMGYGL--------RNVV--D-KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 139 ~~~~D~v~~~~~l--------~~~~--~-~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
..++|+|++...- +|.- . ....+.-...+|+|||.+++-.+....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 4557999974432 1111 0 244567777899999999887776544
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-07 Score=68.87 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=62.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------C--C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F--S 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~--~ 138 (257)
++.+|||+||++|.++..++++.++...|+++|+.+. ... +++..+++|+.+.. + .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~--------~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPL--------QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS---------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccc--------cceeeeecccchhhHHHhhhhhcccc
Confidence 4589999999999999999988445679999999775 000 34555555554321 1 1
Q ss_pred CCcccEEEecccccCcc----c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 DCFFDAITMGYGLRNVV----D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~----~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+.+|+|++........ + ....+.-+.+.|+|||.+++-.+..
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 26899999877332221 1 2334555667799999988776654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=62.51 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=85.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...-..-.+++|||+|+|+|..++..++. .-.+|...|+.+..+...+-+.+..+ .++.+...|..-
T Consensus 68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g--- 138 (218)
T COG3897 68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG--- 138 (218)
T ss_pred HHHHhcCccccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence 344444444456789999999999998887766 23589999999888887777766544 578888888765
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
.+..+|+++...++..-+.-.+++....+....|-.+++.++.++..
T Consensus 139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 35679999999998877766777774444445555676777665443
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3e-05 Score=59.50 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=123.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC---CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 131 (257)
.+++....+...+..+.+.+|+|+|+..-++.|.+.+.+ ...++.+|+|...+....+.+....+. -.+.-+++|
T Consensus 64 aIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~--l~v~~l~~~ 141 (321)
T COG4301 64 AILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG--LEVNALCGD 141 (321)
T ss_pred HHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC--CeEeehhhh
Confidence 344444444555667889999999999999888887633 248999999999988766665443321 245556677
Q ss_pred CCCC-C-CCCCc-ccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEE-eecCCCchh----------HHHHHHHHH
Q 025144 132 ALDL-P-FSDCF-FDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL-DFNKSTQPF----------TTAIQEWMI 195 (257)
Q Consensus 132 ~~~~-~-~~~~~-~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~-~~~~~~~~~----------~~~~~~~~~ 195 (257)
.+.. . .+..+ ==.++...++.++. +...+|.+++..++||-.+++. |+..+.... ...+...+.
T Consensus 142 ~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvL 221 (321)
T COG4301 142 YELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVL 221 (321)
T ss_pred HHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHH
Confidence 6641 1 22222 23344556677773 5677899999999999998774 333322211 111111111
Q ss_pred hhhhhhhhccCCc-----hhhh---------------------------------hhhHHHHhccCCHHHHHHHHHHcCc
Q 025144 196 DNVVVPVASGYGL-----AEEY---------------------------------QYLKSSIREFLTGKDLEKLALEIGF 237 (257)
Q Consensus 196 ~~~~~~~~~~~~~-----~~~~---------------------------------~~~~~~~~~~~~~~~~~~~l~~~Gf 237 (257)
.+....+.+.+-. ...| ..+...+.+-++.+.++..++.+||
T Consensus 222 a~lNr~f~~nFD~~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kfslq~irq~laa~gl 301 (321)
T COG4301 222 AHLNRVFGGNFDVDDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKFSLQAIRQQLAAAGL 301 (321)
T ss_pred HHHHHHhccCCCcchhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCceeehhhhhhCCHHHHHHHHHhcCC
Confidence 1111111111110 0001 1111223456788999999999999
Q ss_pred eeeEEeeecCceeEEEeeeC
Q 025144 238 SRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~k 257 (257)
+.+.+|+...+.+++++++|
T Consensus 302 ~~v~~wtd~~qdf~~~l~~v 321 (321)
T COG4301 302 EPVQKWTDAIQDFGLSLAAV 321 (321)
T ss_pred eEeeehhhhhhhhhhheecC
Confidence 99999999888888877764
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-06 Score=68.52 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 148 (257)
+.+|||+.||+|..++.++.+.+.-.+|+++|+++.+++.++++++..+. .++.+++.|...+- ...+.||+|.+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999988742235899999999999999999865432 36889999987642 123579999885
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. + ..+..++..+.+.++++|.+.+..
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 3 345678889999999999998863
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=59.86 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=82.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v 145 (257)
.++.+||+||-|.|-....+.+. +| .+=.-++..++.++..+...-. ...++.+..+--++. .+++++||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCccee
Confidence 66789999999999988888776 34 4556789999999888876322 226788888777663 3678999999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+-.---.+.+|...+...+.++|||+|++-...-
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 8755446667888889999999999999866543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=64.06 Aligned_cols=74 Identities=26% Similarity=0.486 Sum_probs=53.9
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCc-ccEEEec
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF-FDAITMG 148 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~v~~~ 148 (257)
.|+|+.||.|..++.+++.+ .+|+++|+++..++.++.+.+-.+.. .++.++++|..+.. ...+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~--~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA--DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G--GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999873 68999999999999999998876643 68999999998753 22222 8999985
Q ss_pred cc
Q 025144 149 YG 150 (257)
Q Consensus 149 ~~ 150 (257)
..
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 43
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=58.05 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh---CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
..+..+|+|+|||.|.++..++..+ .++.+|+++|.++..++.+.++.+........+..+...+..+... .+..+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 3667799999999999999999832 2577999999999999999988765542212456666666654322 45678
Q ss_pred EEEecccccCcccHHHHHHHHHh
Q 025144 144 AITMGYGLRNVVDKRKALEESFR 166 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~ 166 (257)
+++..+....+. ..+++...+
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~ 122 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR 122 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH
Confidence 888766655553 234444443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0001 Score=54.95 Aligned_cols=106 Identities=20% Similarity=0.152 Sum_probs=79.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
.+++.++.+||-+|+.+|....++++-.+ ...+++++.|+.+....-...+.. +|+.-+..|+.... +--+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve 144 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVE 144 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcc
Confidence 35678999999999999999999999874 678999999998876655544332 68888999988642 2235
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..|+|+..-. --....-+..+....||+||.++++
T Consensus 145 ~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 145 KVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEE
Confidence 6899986221 1123455688889999999977664
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-05 Score=63.33 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC---C----------------------------Cc-------
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG---S----------------------------QG------- 95 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~----------------------------~~------- 95 (257)
.+.+...++.+.+-.++..++|.=||+|.+.+..+-... | .+
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 445556667777778888999999999999988776521 1 11
Q ss_pred eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc-c---cHH----HHHHHHHhc
Q 025144 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV-V---DKR----KALEESFRV 167 (257)
Q Consensus 96 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~---~~~----~~l~~~~~~ 167 (257)
.++|+|+++.+++.|+.+....+.. +.|.+.++|+..+..+.+.+|+|+++.....- . ... .+.+.+++.
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~--d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVG--DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCC--ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 2779999999999999999877655 67999999999886444789999998764422 1 122 233445555
Q ss_pred ccCCCEEEEEe
Q 025144 168 LKPGSRISVLD 178 (257)
Q Consensus 168 Lk~gG~l~~~~ 178 (257)
++..+..++..
T Consensus 334 ~~~ws~~v~tt 344 (381)
T COG0116 334 LAGWSRYVFTT 344 (381)
T ss_pred hcCCceEEEEc
Confidence 56566666553
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00064 Score=52.53 Aligned_cols=106 Identities=19% Similarity=0.129 Sum_probs=61.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-CCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-FSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~ 144 (257)
.-.+++||-+|= ..++...+...++..+|+++|+++.+++..++..++.+ -+++.+..|+.+. | .-.++||+
T Consensus 42 dL~gk~il~lGD--DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 42 DLEGKRILFLGD--DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp -STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSE
T ss_pred cccCCEEEEEcC--CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCE
Confidence 346789999983 33333222233456799999999999999998887665 3599999999873 2 11388999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++.... ...+....++.+....||..|...+..+
T Consensus 116 f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 116 FFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp EEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred EEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 987543 3345567789999999987664333333
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00011 Score=55.61 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.++.||||..|.+..+|.+. ++-..+++.|+++..++.|.++++..+.. +++.+..+|....--++..+|+|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~--~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS--ERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc--ceEEEeccCCccccCccCCcCEEEEe
Confidence 3456999999999999999998 56678999999999999999998876654 68999999996533344579999876
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHH
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 228 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (257)
.+=... ....|++-.+.|+.=-.+++. + .-...++
T Consensus 93 GMGG~l--I~~ILee~~~~l~~~~rlILQ-P------------------------------------------n~~~~~L 127 (226)
T COG2384 93 GMGGTL--IREILEEGKEKLKGVERLILQ-P------------------------------------------NIHTYEL 127 (226)
T ss_pred CCcHHH--HHHHHHHhhhhhcCcceEEEC-C------------------------------------------CCCHHHH
Confidence 642211 234444444444432234321 1 1245688
Q ss_pred HHHHHHcCceeeEEeee
Q 025144 229 EKLALEIGFSRAKHYEL 245 (257)
Q Consensus 229 ~~~l~~~Gf~~~~~~~~ 245 (257)
++.|...+|++..-.-+
T Consensus 128 R~~L~~~~~~I~~E~il 144 (226)
T COG2384 128 REWLSANSYEIKAETIL 144 (226)
T ss_pred HHHHHhCCceeeeeeee
Confidence 88999999988765444
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=65.23 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+...++..+...++..++|.-+|.|..+..+++.++ ..+++|+|.++.+++.++++++... .++.++++++.+
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~ 80 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFAN 80 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHH
Confidence 34455566677778888999999999999999999874 4899999999999999999886542 589999999987
Q ss_pred CC-----CCCCcccEEEecccccCc--ccHHHHH
Q 025144 135 LP-----FSDCFFDAITMGYGLRNV--VDKRKAL 161 (257)
Q Consensus 135 ~~-----~~~~~~D~v~~~~~l~~~--~~~~~~l 161 (257)
+. ...+++|.|++...+... +++++-+
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGF 114 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVSSPQLDDPERGF 114 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCCHhhcCCCCCCC
Confidence 53 233579999986665433 3444433
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=59.19 Aligned_cols=98 Identities=21% Similarity=0.206 Sum_probs=76.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 150 (257)
..+.|+|+|+|-++...+.. -.+|++++.+|.....|.++++-.+ ..++.++.+|+.+..+ +..|+|+|-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence 58999999999988777655 3589999999999999999974433 3689999999999887 45899997432
Q ss_pred cc--CcccHHHHHHHHHhcccCCCEEEE
Q 025144 151 LR--NVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 151 l~--~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
-. -.+.....++.+.+.||-++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 21 123456678888888999888853
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-05 Score=61.85 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=108.9
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCC-------CCCCeEEEecCCCChhHHHHHHHhCCCceEEEE
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGA-------KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGL 100 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~ 100 (257)
...+.+....+...+..+...-.......+...+..+-.. ....+||--|||.|+++..|+.. +..+-|-
T Consensus 102 ~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~---G~~~qGN 178 (369)
T KOG2798|consen 102 PDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL---GFKCQGN 178 (369)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh---ccccccc
Confidence 4455566666665555554433333333444433333222 22458999999999999999877 4567777
Q ss_pred eCChhHHHHHHhhh---hhhh----------------------------------hccCCCeeEEEccCCCCC---CCCC
Q 025144 101 DFSKNQLSMASSRQ---DLVS----------------------------------KACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 101 D~s~~~~~~a~~~~---~~~~----------------------------------~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
+.|--|+--..=.+ +..+ .....+..+..+|+.+.- -..+
T Consensus 179 EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~ 258 (369)
T KOG2798|consen 179 EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAG 258 (369)
T ss_pred HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCC
Confidence 88777764332211 0000 000011222334444321 1124
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
.||+|+..+.+....+....+..|.++|||||+.+-..+-. .++....+... ...
T Consensus 259 ~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLl------------------YHF~d~~g~~~-------~~s 313 (369)
T KOG2798|consen 259 SYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLL------------------YHFEDTHGVEN-------EMS 313 (369)
T ss_pred ccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecccee------------------eeccCCCCCcc-------ccc
Confidence 79999988888877888999999999999999986432110 00000000000 000
Q ss_pred ccCCHHHHHHHHHHcCceeeEEee
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
--++.+++..+.+..||++++...
T Consensus 314 iEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 314 IELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred ccccHHHHHHHHHhcCcEEEEeee
Confidence 134789999999999999887653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-06 Score=67.77 Aligned_cols=75 Identities=31% Similarity=0.576 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+...+..++...++ +|||+-||.|.++..+++. ..+|+|+|.++.+++.|+++++..+. .|++++.++.+
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~ 254 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SH
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeecc
Confidence 45556666777776666 8999999999999999966 46999999999999999999876553 58999988765
Q ss_pred CC
Q 025144 134 DL 135 (257)
Q Consensus 134 ~~ 135 (257)
++
T Consensus 255 ~~ 256 (352)
T PF05958_consen 255 DF 256 (352)
T ss_dssp HC
T ss_pred ch
Confidence 43
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.4e-05 Score=67.88 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC-------CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGS-------QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
...+|||.|||+|.+...+++.+.. ...++++|+++..+..++.++...+. ..+.+...|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~---~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL---LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC---CCceeeecccccccccccc
Confidence 3459999999999999998877521 24789999999999999988754431 23455555543211
Q ss_pred CCCCcccEEEeccccc
Q 025144 137 FSDCFFDAITMGYGLR 152 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~ 152 (257)
-..+.||+|+.+-...
T Consensus 108 ~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 108 SYLDLFDIVITNPPYG 123 (524)
T ss_pred cccCcccEEEeCCCcc
Confidence 1125799999976655
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-07 Score=60.89 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=44.1
Q ss_pred EEecCCCChhHHHHHHHhCCCc--eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEecc
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGY 149 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~ 149 (257)
||+|+..|..+..+++.+.+.. +++++|..+. .+..++.++..+.. .++++++++..+. .++.+++|+++...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~--~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS--DRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC--CeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6899999999988887654443 7999999885 22333333322222 5799999998753 13347899999755
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-|..+.....++.+.+.|+|||.+++-+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3444566778999999999999987754
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-05 Score=64.23 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=84.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
++|-+|||.-.+...+-+. ....++-+|+|+..++....+.... .+-.++...|...+.+++++||+|+....+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCcc
Confidence 8999999999888887765 3568999999999988887775422 157899999999999999999999999988
Q ss_pred cCcc-c---------HHHHHHHHHhcccCCCEEEEEee
Q 025144 152 RNVV-D---------KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 152 ~~~~-~---------~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++. + ....+.++++++++||+.+.+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 8773 1 24558899999999999877765
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=61.50 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+..+|+|||||.-=++..+... .++..|+++|++..+++.....+...+ .+..+...|...-+ +....|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhH
Confidence 44779999999999888887765 467899999999999999998877665 56777778887743 4578999998
Q ss_pred cccccCcc
Q 025144 148 GYGLRNVV 155 (257)
Q Consensus 148 ~~~l~~~~ 155 (257)
.=+++-++
T Consensus 178 lK~lp~le 185 (251)
T PF07091_consen 178 LKTLPCLE 185 (251)
T ss_dssp ET-HHHHH
T ss_pred HHHHHHHH
Confidence 77766654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.4e-05 Score=54.65 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=71.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL--------PF 137 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~--------~~ 137 (257)
+.|+.+|||+||.+|.++....++.+|...|.|+|+-.- . ++ ....++++ |+.+. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~---~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP---EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC---CCcccccccccCCHHHHHHHHHhC
Confidence 467899999999999999999999889999999997321 1 10 34556665 66663 14
Q ss_pred CCCcccEEEecccccCc----ccH-------HHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 138 SDCFFDAITMGYGLRNV----VDK-------RKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
++-..|+|++...-... .|- ..++.-....++|+|.+++-.+......
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~ 191 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEA 191 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchH
Confidence 66789999975432211 121 2234444566789999998877765544
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00041 Score=57.84 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=89.2
Q ss_pred CCeEEEecCCCChhHHHHHHHh--------------CCCceEEEEeCChhHHHHHHhhhhhhhh-----c-----cCCC-
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV--------------GSQGKVIGLDFSKNQLSMASSRQDLVSK-----A-----CYKN- 124 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~-----~~~~- 124 (257)
..+|+|+|||+|..+..+.... .|..++...|+-..=-...=+.+..... . ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4589999999998775543321 1345777777532111111111110000 0 0011
Q ss_pred --eeEEEccCCCCCCCCCcccEEEecccccCccc--------------------------------------HHHHHHHH
Q 025144 125 --IEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--------------------------------------KRKALEES 164 (257)
Q Consensus 125 --~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~ 164 (257)
+..+.+.+-.--+|.++.+++++..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444443478999999999999999853 12234444
Q ss_pred HhcccCCCEEEEEeecCCCchhH-----HHHHHH-HHhhhhhhhhccCCchhhhhhhHHHHh--ccCCHHHHHHHHHHcC
Q 025144 165 FRVLKPGSRISVLDFNKSTQPFT-----TAIQEW-MIDNVVVPVASGYGLAEEYQYLKSSIR--EFLTGKDLEKLALEIG 236 (257)
Q Consensus 165 ~~~Lk~gG~l~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G 236 (257)
.+-|.|||.+++....++..... ...... ....+........-..+.+ ..... ...+.+|+++.+++.|
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~---dsFniP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKR---DSFNIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHH---hcccCcccCCCHHHHHHHHhhcC
Confidence 56788999999887766432111 011111 1111111111111111111 11111 2459999999999999
Q ss_pred -ceeeEEeeec
Q 025144 237 -FSRAKHYELS 246 (257)
Q Consensus 237 -f~~~~~~~~~ 246 (257)
|++.+...+.
T Consensus 301 sF~I~~le~~~ 311 (386)
T PLN02668 301 SFAIDKLEVFK 311 (386)
T ss_pred CEEeeeeEEee
Confidence 6666555443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=59.95 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=89.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
.+...++.||||+++-+|.-+.+++..+.....|++.|.+..-+.....++...+. .+..+...|...++ ++.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCcccccccccCc-
Confidence 35667889999999999999999999887778999999999999999988877763 57888888887654 443
Q ss_pred cccEEEecccccC------------cc---c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 141 FFDAITMGYGLRN------------VV---D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 141 ~~D~v~~~~~l~~------------~~---~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+||-|+......- .. + ..++|......+++||+|+..+.+-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 8999996443332 11 1 2556788889999999998877654
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.7e-05 Score=58.71 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~ 144 (257)
....|+|.-||.|..++..+.+ ...|+++|++|.-+..|+.+++-.+.. .++.++++|+.++ .+....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHhhhhheeee
Confidence 3458999999999999888877 468999999999999999998877665 6999999999874 344555778
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCC
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGS 172 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG 172 (257)
|+.+.....-.-...-+-.+...++|.|
T Consensus 169 vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred eecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 8776554433223333444445555543
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.2e-06 Score=58.18 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 135 LPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..|.+++.|+|++.+++.|+. +...+++.+++.|||||.|-+..+..
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 467889999999999999984 67788999999999999998876543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-05 Score=57.68 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=68.9
Q ss_pred HHHhhhCCCCCC--eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----cc--CCCeeEEEcc
Q 025144 60 MAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----AC--YKNIEWVEGD 131 (257)
Q Consensus 60 ~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~--~~~~~~~~~d 131 (257)
.+.+..++.++. +|||+-+|+|..+..++.. +++|+++|-++.+....+..++.... .. ..+++++++|
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 344556666766 9999999999999999976 67899999999998888887765310 11 1468899999
Q ss_pred CCCCC-CCCCcccEEEecccccCc
Q 025144 132 ALDLP-FSDCFFDAITMGYGLRNV 154 (257)
Q Consensus 132 ~~~~~-~~~~~~D~v~~~~~l~~~ 154 (257)
..++- ...++||+|++.-++.+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 87642 123479999998877664
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-05 Score=56.66 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hccCCCeeEEEccCCCCC---CCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KACYKNIEWVEGDALDLP---FSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~d~~~~~---~~~~~ 141 (257)
..-.+.|||||-|.++..|+..+ |..-+.|+++--..-+..++++.... .+.+.|+.+...+....- +..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 34579999999999999999996 88899999999888888888875543 122467777777766532 22222
Q ss_pred ccEEEecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-+-.+..+.--|+.. -..++.+..-+|++||.++.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 222222222112210 2456778888999999987654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00022 Score=50.55 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=58.4
Q ss_pred eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEecccccCcc-----------cHHHHHH
Q 025144 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVV-----------DKRKALE 162 (257)
Q Consensus 96 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~-----------~~~~~l~ 162 (257)
+|+++|+-+++++..+++++..+.. .++.++..+-+.+. .+.+++|+++.+.. ++| .-...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~--~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE--DRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G--SGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC--CcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 5899999999999999999876544 57999998887764 23358999987644 332 1356688
Q ss_pred HHHhcccCCCEEEEEeecCCC
Q 025144 163 ESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 163 ~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.+.+.|+|||.+.++......
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STC
T ss_pred HHHHhhccCCEEEEEEeCCCC
Confidence 899999999999888765433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.6e-05 Score=54.49 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=48.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+++|+|||.|..+..+++. .+..+++++|+++.+.+.++++++..+. .++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 4899999999999999887 4666999999999999999998764332 357777777665
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=66.14 Aligned_cols=75 Identities=25% Similarity=0.541 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+...+..+...+.+..++|+.||||.++..+++. -..|+|+++++..++.|+.+....+. .|.+|+++-.+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI---SNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc---cceeeeecchh
Confidence 5667778888889999999999999999999999876 36899999999999999999876554 69999999665
Q ss_pred C
Q 025144 134 D 134 (257)
Q Consensus 134 ~ 134 (257)
+
T Consensus 442 ~ 442 (534)
T KOG2187|consen 442 D 442 (534)
T ss_pred h
Confidence 5
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=58.47 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=85.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChh----HHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN----QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~----~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
-..|+|..+|.|.++..|.+. .|.++...+. .+...-.+ .-+-+.+.=.+.++.=+.+||+|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydR---------GLIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDR---------GLIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred eeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhc---------ccchhccchhhccCCCCcchhhe
Confidence 358999999999999999754 2444444332 22222222 12333332233344335899999
Q ss_pred EecccccCcc---cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhcc
Q 025144 146 TMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 222 (257)
Q Consensus 146 ~~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (257)
.+.+++.... +...++-++-|+|+|+|.+++-|...
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~----------------------------------------- 470 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD----------------------------------------- 470 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------------------------------
Confidence 9999888775 47788999999999999998865211
Q ss_pred CCHHHHHHHHHHcCceeeEEeeec--CceeEEEeeeC
Q 025144 223 LTGKDLEKLALEIGFSRAKHYELS--GGLMGNLVATR 257 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~~--~g~~~~~~~~k 257 (257)
-..++++++..-.++......-. .+--++++++|
T Consensus 471 -vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 471 -VLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred -HHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 23567778877777644433322 23467888876
|
; GO: 0008168 methyltransferase activity |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00084 Score=51.63 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=68.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCCCC---CCCCcc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALDLP---FSDCFF 142 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~~---~~~~~~ 142 (257)
..++..+||+|+.||.++..++++ + -.+|+++|.....+..--+.- +++ .+...++..+. +. +..
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-g-Ak~VyavDVG~~Ql~~kLR~d--------~rV~~~E~tN~r~l~~~~~~-~~~ 145 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-G-AKHVYAVDVGYGQLHWKLRND--------PRVIVLERTNVRYLTPEDFT-EKP 145 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-C-CcEEEEEEccCCccCHhHhcC--------CcEEEEecCChhhCCHHHcc-cCC
Confidence 356789999999999999999987 2 358999999776554332221 343 34445555442 22 367
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++++.-++- ....+|..+..++++++.++..
T Consensus 146 d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 146 DLIVIDVSFI---SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CeEEEEeehh---hHHHHHHHHHHhcCCCceEEEE
Confidence 8999876654 4578899999999999987654
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=54.51 Aligned_cols=90 Identities=26% Similarity=0.341 Sum_probs=52.4
Q ss_pred HHhhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc------cCCCeeEEEccC
Q 025144 61 AVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------CYKNIEWVEGDA 132 (257)
Q Consensus 61 ~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~d~ 132 (257)
+.+..++.++ .+|||.-+|-|..+..++.. +.+|+++|-||.+....+.-++..... ...+++++++|.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 4444555554 49999999999999998854 579999999997766655443322111 114799999999
Q ss_pred CCC-CCCCCcccEEEecccccC
Q 025144 133 LDL-PFSDCFFDAITMGYGLRN 153 (257)
Q Consensus 133 ~~~-~~~~~~~D~v~~~~~l~~ 153 (257)
.++ ..++++||+|++..++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 873 455789999999877665
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0037 Score=51.71 Aligned_cols=177 Identities=17% Similarity=0.160 Sum_probs=82.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh---------------CCCceEEEEeCChhHHHHHHhhhhhhh--hccCCC--eeEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV---------------GSQGKVIGLDFSKNQLSMASSRQDLVS--KACYKN--IEWV 128 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~--~~~~ 128 (257)
+..-+|+|+||.+|..+..+.... .|..+|...|+-..=-...=+.+.... ....++ +..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 344599999999999887665532 122478888853311111111111100 000123 3345
Q ss_pred EccCCCCCCCCCcccEEEecccccCccc---------------------------------------HHHHHHHHHhccc
Q 025144 129 EGDALDLPFSDCFFDAITMGYGLRNVVD---------------------------------------KRKALEESFRVLK 169 (257)
Q Consensus 129 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------------------------~~~~l~~~~~~Lk 169 (257)
.+.+-.--+|+++.|++++..++||+.. ...+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 6666665588999999999999998832 1223444456788
Q ss_pred CCCEEEEEeecCCCchhH----HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcC-ceeeEEee
Q 025144 170 PGSRISVLDFNKSTQPFT----TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYE 244 (257)
Q Consensus 170 ~gG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~ 244 (257)
|||.+++.....++.... ......+...+......+.-..+...... -.....+.+|+++.+++.| |++.+...
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfn-iP~Y~ps~eEv~~~I~~~gsF~I~~le~ 253 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFN-IPIYFPSPEEVRAIIEEEGSFEIEKLEL 253 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG---SBB---HHHHHHHHHHHTSEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhcee-CCccCCCHHHHHHHHhcCCCEEEEEEEE
Confidence 999999887776552110 11111211111111111111111110000 0012459999999999988 66654443
Q ss_pred e
Q 025144 245 L 245 (257)
Q Consensus 245 ~ 245 (257)
+
T Consensus 254 ~ 254 (334)
T PF03492_consen 254 F 254 (334)
T ss_dssp E
T ss_pred E
Confidence 3
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00057 Score=54.40 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.......+.+.++...+|.--|.|..+..+++.+++...++++|-++.+++.|++++...+ +++.+++.++.
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~ 83 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFA 83 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHH
Confidence 34455667777888888999999999999999999998667789999999999999999987654 68999999988
Q ss_pred CCC-----CCCCcccEEEecccccC
Q 025144 134 DLP-----FSDCFFDAITMGYGLRN 153 (257)
Q Consensus 134 ~~~-----~~~~~~D~v~~~~~l~~ 153 (257)
++. ...+++|-|++......
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGVSS 108 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGVSS 108 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccCCc
Confidence 753 22457888887555443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00083 Score=50.91 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=56.8
Q ss_pred CCCeEEEecCCCChhHHHHHH---HhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------C-
Q 025144 69 TGDNVLDVCCGSGDLSFLLSE---QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------F- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~---~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~- 137 (257)
++..|+|+|.-.|..+..++. .+++..+|+++|++....... ..+..+.. ++++++++|..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~--~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS--PRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc--CceEEEECCCCCHHHHHHHHHhh
Confidence 355999999999988776654 445678999999965433222 22222222 69999999998752 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
......+|+ ..+-|..+...+.|+....++++|+++++.|
T Consensus 108 ~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 108 SPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ---SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 112233443 3444455677888999999999999998765
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00049 Score=52.76 Aligned_cols=103 Identities=26% Similarity=0.261 Sum_probs=73.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH----HHHHHhhhhhhhhccCCCeeEEEccCCCCC---
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEGDALDLP--- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 136 (257)
.+++.|+.+||-+|+++|....++.+.++|..-|+++|.|... +..|+++ .|+--+..|+.-..
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------TNIIPIIEDARHPAKYR 221 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------CCceeeeccCCCchhee
Confidence 4578999999999999999999999999999999999998744 4444444 67777777776521
Q ss_pred CCCCcccEEEecccccCcccH-HHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDK-RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~-~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..-+-.|+|++.-. -+|. ..+.-+..-.||+||.+++.-
T Consensus 222 mlVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 22245677765221 1222 233456777899999987754
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=56.95 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=64.2
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...++..+...++..++|.--|.|..+..+++.++ ...++++|.++.+++.+++++.... .++.+++.++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLD 82 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHH
Confidence 445566677788888999999999999999999874 4899999999999999999886543 68999999988753
Q ss_pred -----C-CCCcccEEEeccccc
Q 025144 137 -----F-SDCFFDAITMGYGLR 152 (257)
Q Consensus 137 -----~-~~~~~D~v~~~~~l~ 152 (257)
. ..+++|.|++...+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHccCCCccCEEEEccccC
Confidence 2 345788888755443
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=52.11 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=48.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCC-----CCCCCccc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDL-----PFSDCFFD 143 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-----~~~~~~~D 143 (257)
.-++||||+|....-..|.... .+.+++|+|+++..++.|+++++.. ... .+|.++...-... ..+++.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~--~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLE--SRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-T--TTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccc--cceEEEEcCCccccchhhhcccceee
Confidence 4589999999887655554443 3689999999999999999998765 333 6788876543321 12346899
Q ss_pred EEEecccccCcc
Q 025144 144 AITMGYGLRNVV 155 (257)
Q Consensus 144 ~v~~~~~l~~~~ 155 (257)
...|+..++.-.
T Consensus 180 ftmCNPPFy~s~ 191 (299)
T PF05971_consen 180 FTMCNPPFYSSQ 191 (299)
T ss_dssp EEEE-----SS-
T ss_pred EEecCCccccCh
Confidence 999999888664
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=51.01 Aligned_cols=108 Identities=16% Similarity=-0.008 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccC---CCeeEEEccCCCC---CCCCCc-
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY---KNIEWVEGDALDL---PFSDCF- 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~d~~~~---~~~~~~- 141 (257)
...+|||+|+|+|..+...+.. .+.+|...|... .+...+.+......... .++.+...+-... .+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL--LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH--hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 3557999999999887777765 367999999744 44433333221111000 1444444433332 121233
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|+|++..++.....++.++.-++..|..+|.+++...
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999999999888888888889999988886655543
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00094 Score=50.88 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC----C-c---eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGS----Q-G---KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~----~-~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
-.+++|+++..|.++..|.+++.. . . .++++|+.+ |. ..+.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------------ccCceEEeecccCCHhHHHHH
Confidence 358999999999999999887622 1 1 388999743 21 1268889999998753
Q ss_pred ---CCCCcccEEEeccc-----ccCccc------HHHHHHHHHhcccCCCEEEEEe
Q 025144 137 ---FSDCFFDAITMGYG-----LRNVVD------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~-----l~~~~~------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|..++.|+|+|... +|.+++ +...|.-...+|||||.++.--
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 55678999999654 555543 2445666778999999996533
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=53.70 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=69.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc-CCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
...+|||+|.|.|.-+..+-.-++....++.++.|+..-+............. ..+..-+..|-.+++. .+.|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhh
Confidence 34589999999998777666655333467778888866555544332111100 0011122222222222 345777766
Q ss_pred cccccCcc---cHHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 148 GYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 148 ~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
.+-|-+.. .+...++++..++.|||.|++++...+...
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 55444432 234479999999999999999998876654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0042 Score=50.91 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=70.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc-CCCCCCCCCcc
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-ALDLPFSDCFF 142 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~ 142 (257)
....|+.+|+=+|+| .|..+..+++.+ +++|+++|.|++-++.|++.- .-.++... ......-.+.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIA 230 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhC
Confidence 567889999999987 467888888875 589999999999998888762 33344433 22221112349
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|+|+..-. ...+....+.|+++|.++++-..
T Consensus 231 d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 99987543 45677788899999999887655
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0084 Score=49.21 Aligned_cols=117 Identities=26% Similarity=0.365 Sum_probs=79.8
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCC---ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.+.+.|+.+|||+++-+|.-+..+++..... ..+++-|.++.-+.......+.... +++.+...|....+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~---~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS---PNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC---cceeeecccceecccccc
Confidence 4577899999999999999999999886432 2799999998777776666533321 35555555554433
Q ss_pred -----CCCCcccEEEeccc------ccCccc-----------------HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 137 -----FSDCFFDAITMGYG------LRNVVD-----------------KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 137 -----~~~~~~D~v~~~~~------l~~~~~-----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.....||-|++.-. +..-++ ...+|.+-.++||+||.++..+.+...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 12346999986221 111111 245688999999999999988766544
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.003 Score=50.81 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=75.3
Q ss_pred CeEEEecCCCChhHHHHHHHh-------------------CCCceEEEEeCCh--hHHHHHHhhhhhh------------
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-------------------GSQGKVIGLDFSK--NQLSMASSRQDLV------------ 117 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-------------------~~~~~v~~~D~s~--~~~~~a~~~~~~~------------ 117 (257)
.+||.||+|.|.-...++..+ .+...++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987666665554 0124899999865 3444444433222
Q ss_pred --hhccCCCeeEEEccCCCCCCC-------CCcccEEEecccccCc-----ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 118 --SKACYKNIEWVEGDALDLPFS-------DCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 118 --~~~~~~~~~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....-++.|.+.|+..+..+ ....|+|.+.+++..+ ..-.++|.++...++||..|+|+|..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 011123688999999876532 1357889888887654 34677899999999999999998744
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.061 Score=42.93 Aligned_cols=167 Identities=13% Similarity=0.032 Sum_probs=91.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C--
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-- 135 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-- 135 (257)
+.+...+.. ....|+.+|||-=.-...+. . +++..++=+|. |++++.-++.+...+.....+..++..|+.+ +
T Consensus 72 ~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~-~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 72 DFLLAAVAA-GIRQVVILGAGLDTRAYRLP-W-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHhc-CCcEEEEeCCccccHHHhcC-C-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 334444433 23479999998744443332 1 12345555554 4556655555554322222578899999862 1
Q ss_pred -----CCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCc
Q 025144 136 -----PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208 (257)
Q Consensus 136 -----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
.+..+.--++++-.++.+++ +...+++.+.+...||+.+++-....-.............. ...+.
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~----~~~~~--- 220 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYH----AARGV--- 220 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHH----hhhcc---
Confidence 12233455777888888886 46788999998888888886544333111110000111100 00000
Q ss_pred hhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEE
Q 025144 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 242 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 242 (257)
.........+.+++.+.|.+.||+..+.
T Consensus 221 ------~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 221 ------DGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ------cccccccCCChhhHHHHHHHCCCeeecC
Confidence 0011122457899999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0084 Score=42.58 Aligned_cols=114 Identities=12% Similarity=0.169 Sum_probs=75.5
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
++.++..++..+.+|+|+|.|+.....++. + -...+|+|+++-.+..++-+.-+.+- .++..|..-|+....+.+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~RkdlwK~dl~d- 138 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDLWKVDLRD- 138 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhhhhccccc-
Confidence 345555677679999999999999888776 2 35789999999988887755433332 267889999988876543
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
|.-++.+.+-..++|++ .++..-+..+..++..-+..|.
T Consensus 139 -y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 139 -YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecCCCc
Confidence 55555544433333333 3444456667777655554444
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.017 Score=50.33 Aligned_cols=101 Identities=20% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-----------
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----------- 134 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----------- 134 (257)
..++.+|+=+|+|. |..+...++.+ +++|+++|.+++-++.+++.- ..+...|..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslG----------A~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMG----------AEFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC----------CeEEEeccccccccccchhhh
Confidence 45788999999996 77778888875 568999999999988887631 1111111100
Q ss_pred CC----------CCC--CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LP----------FSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~----------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.. +.+ +.+|+|+........+.+..+.++..+.+||||.++....
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 011 3599999766544333344446999999999999877654
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.047 Score=47.75 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=91.5
Q ss_pred hhHHHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC---CceEEEEeCC
Q 025144 29 SERQELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFS 103 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s 103 (257)
+...+.|+-....|....... .+--.....+.+...+.+.+..+|.|..||+|.+.....+.+.. ...++|.|.+
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 445555555444444432221 11123445566666666667779999999999988877776532 2569999999
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C----CCCcccEEEeccccc---Cc---------------------
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F----SDCFFDAITMGYGLR---NV--------------------- 154 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~----~~~~~D~v~~~~~l~---~~--------------------- 154 (257)
+.....++.+.--.+.. ..+....+|-..-+ . ..+.||.|+++..+. +.
T Consensus 224 ~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 99999998876433321 12344555444322 2 336799999866553 00
Q ss_pred ccH-HHHHHHHHhcccCCCEEEEEe
Q 025144 155 VDK-RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 155 ~~~-~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.. ..++.++...|+|||...++-
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEe
Confidence 011 567889999999988655443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0053 Score=51.55 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 147 (257)
.+.+|||.=+|+|.-++..+..++...+|+..|+|+++++..+++++..+... ..+.+.+.|+..+- ...+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe
Confidence 34589999999998888777775445689999999999999999987655431 25788888887632 24578999964
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-+-.+..+|....+.++.||.|.+..
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 234467889999999999999998764
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=49.21 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCeEEEecCCCChhHHHHHH---HhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSE---QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~---~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
...|+-+|+|-|-+.....+ ......+++++|-+|.++...+.+ +..... .+++++..|+..++.+.++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~--~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWD--NRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhc--CeeEEEeccccccCCchhhccchH
Confidence 45789999999977654433 333456899999999888776653 222222 689999999999886558899998
Q ss_pred ecccccCccc---HHHHHHHHHhcccCCCEEE
Q 025144 147 MGYGLRNVVD---KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 147 ~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~ 175 (257)
+ -.|..+.| -.+.|.-+-+.|||+|+.+
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 5 22333322 3678899999999998775
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0062 Score=48.41 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=80.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC--CCCCCcc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL--PFSDCFF 142 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~--~~~~~~~ 142 (257)
.....+++|-||.|.|...+..+++ ..-.++..+|++...++..++.+.....+ ..+++.+..+|...+ ....++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 3445679999999999999988877 34558999999998888888776543211 125788888887654 2446889
Q ss_pred cEEEecccccCccc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+|+.-..=--.+. ....+..+.+.||+||+++...
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99986332111111 3556888999999999987754
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.059 Score=39.85 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=82.5
Q ss_pred ecCCCChhHHHHHHHhCCCceEEEEeCChh--HHHH---HHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 76 VCCGSGDLSFLLSEQVGSQGKVIGLDFSKN--QLSM---ASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 76 iG~G~G~~~~~l~~~~~~~~~v~~~D~s~~--~~~~---a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
||=|.-.++..|++..+....+++.-++.. ..+. +.+++...... .-.-....|+.++. ...+.||.|+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~--g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL--GVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc--CCccccCCCCCcccccccccCCcCCEEE
Confidence 555666677888888654556766655443 2221 11233222111 22334566777654 2467899999
Q ss_pred ecccccCc--c----c-------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhh
Q 025144 147 MGYGLRNV--V----D-------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213 (257)
Q Consensus 147 ~~~~l~~~--~----~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
.++.-.-. . + +..++..+.++|+++|.+.+.-...+.
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------------ 130 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------------ 130 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------------
Confidence 87764431 0 1 356789999999999999776543322
Q ss_pred hhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCcee
Q 025144 214 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250 (257)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~ 250 (257)
++.-++.++.+++||...+...+....+
T Consensus 131 ---------y~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 131 ---------YDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred ---------CccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 2334677888999999998887764443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=51.68 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh------CC-----CceEEEEeCCh---hHHHHHHhh-----------hhhhhh---
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV------GS-----QGKVIGLDFSK---NQLSMASSR-----------QDLVSK--- 119 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~s~---~~~~~a~~~-----------~~~~~~--- 119 (257)
.+.-+|+|+|-|+|.......+.. .+ ..+++.+|..| +-+..+... .+..+.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 334699999999999776666544 12 34899999643 333332211 111000
Q ss_pred c--------cCCCeeEEEccCCCC-CCCCCcccEEEeccccc-Cccc--HHHHHHHHHhcccCCCEEE
Q 025144 120 A--------CYKNIEWVEGDALDL-PFSDCFFDAITMGYGLR-NVVD--KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 120 ~--------~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~-~~~~--~~~~l~~~~~~Lk~gG~l~ 175 (257)
. ..-.+.+..+|+.+. +.....+|+++....-- .-++ -..+++.+.+.++|||.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 0 001344666777642 21125699999753211 1122 2778999999999999986
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.023 Score=45.13 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC-------CceEEEEeCChhHHHHHHhhhhh
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGS-------QGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+|+|+|+|+|.++..+++.+.. ..+|+.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999987632 24899999999998888887754
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.034 Score=41.42 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh---CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------CC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------FS 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 138 (257)
.+..|+|+|.-.|..+.+.+... +...+|.++|++-..+..+.... +++.+++++-.+.. ..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--------p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--------PDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--------CCeEEEeCCCCCHHHHHHHHHHh
Confidence 45589999999888777776542 44479999999887765554433 79999999998853 22
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
++.--+.++..+-|+.+...+.|+-...+|..|-++++-+.+-..
T Consensus 141 ~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 141 NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 333345556677777777788888889999999999887755433
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.03 Score=38.76 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=38.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
.+.+|+|||++-|..+++++-+ + -..|+++++++...+..++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-G-AK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-G-ASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-C-ccEEEEeccCHHHHHHHHHHhhh
Confidence 4679999999999999998866 2 34899999999999999887643
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0034 Score=49.66 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=63.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHh-h------hhhhhhccCCCeeEEEccCCCCCC-CC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-R------QDLVSKACYKNIEWVEGDALDLPF-SD 139 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~-~------~~~~~~~~~~~~~~~~~d~~~~~~-~~ 139 (257)
..+++|||+|||+|-..+..... ....+...|.+.+.++...- + ..........-..+.+.+..+..+ ..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 35779999999999998888765 23689999998887732110 0 000000000111222221111111 12
Q ss_pred C--cccEEEecccccCcccHHHH-HHHHHhcccCCCEEEEE
Q 025144 140 C--FFDAITMGYGLRNVVDKRKA-LEESFRVLKPGSRISVL 177 (257)
Q Consensus 140 ~--~~D~v~~~~~l~~~~~~~~~-l~~~~~~Lk~gG~l~~~ 177 (257)
+ +||+|.++-++...+..... .......++++|.++++
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 3 79999998888877766555 55666677888887654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.029 Score=47.15 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=64.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEecc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMGY 149 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~ 149 (257)
..|||||+|||.++...++. + .-.+++++.=..|.+.|++.....+.+ ++|+++.---.++... ....|+++.-.
T Consensus 68 v~vLdigtGTGLLSmMAvra-g-aD~vtA~EvfkPM~d~arkI~~kng~S--dkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-G-ADSVTACEVFKPMVDLARKIMHKNGMS--DKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-c-CCeEEeehhhchHHHHHHHHHhcCCCc--cceeeeccccceeeecCcchhhhhhHhh
Confidence 37899999999999887776 3 447999999999999999988776665 6788877666554321 22366665433
Q ss_pred cccCc--ccHHHHHHHHHhccc
Q 025144 150 GLRNV--VDKRKALEESFRVLK 169 (257)
Q Consensus 150 ~l~~~--~~~~~~l~~~~~~Lk 169 (257)
....+ +.....+++.++.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 22222 123445666666553
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.075 Score=45.07 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=69.4
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L----- 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~----- 135 (257)
.....++.+||.+|+|. |..+..+++.. +. +++++|.+++..+.+++.. ...++...-.+ .
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~ 247 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALR 247 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHH
Confidence 44567788999999988 88888998885 43 6999999999888887652 11222211110 0
Q ss_pred C-CCCCcccEEEeccc---------------ccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 P-FSDCFFDAITMGYG---------------LRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~-~~~~~~D~v~~~~~---------------l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. .....+|+|+-.-. ++...+....+..+.+.++++|.++...
T Consensus 248 ~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 248 ELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred HHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 12336898875321 1122345667888999999999998764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.078 Score=41.79 Aligned_cols=124 Identities=16% Similarity=0.124 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHH---hC-CCceEEEEeCCh--------------------------
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQ---VG-SQGKVIGLDFSK-------------------------- 104 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~-~~~~v~~~D~s~-------------------------- 104 (257)
..+...+...+...-+..|+|+||=.|..+..+... ++ ++.++.++|.=+
T Consensus 60 ~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~ 139 (248)
T PF05711_consen 60 DNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLA 139 (248)
T ss_dssp HHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCT
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccc
Confidence 334444444443444558999999999776554432 22 345788888311
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..++..+++++..+.. .+++.++.+.+.+ ++ .+.+. +.++..-....+.....|+.++..|.|||.+++-+++.
T Consensus 140 ~s~e~V~~n~~~~gl~-~~~v~~vkG~F~dTLp~~p~~~--IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 140 VSLEEVRENFARYGLL-DDNVRFVKGWFPDTLPDAPIER--IALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHCCCCTTTS-STTEEEEES-HHHHCCC-TT----EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cCHHHHHHHHHHcCCC-cccEEEECCcchhhhccCCCcc--EEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1344444555443321 1579999999865 22 22232 33333333344456788999999999999998877654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.023 Score=38.14 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=26.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 102 (257)
.+....+|||||.|.+.-.|... +..-.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE---GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC---CCCcccccc
Confidence 45568999999999998888765 677889995
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.03 Score=43.72 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=34.6
Q ss_pred eEEEccCCCC--CCCCCcccEEEeccccc----C-----c--c---c-HHHHHHHHHhcccCCCEEEE
Q 025144 126 EWVEGDALDL--PFSDCFFDAITMGYGLR----N-----V--V---D-KRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 126 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~----~-----~--~---~-~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+++++|..+. .++++++|+|+...... . + . + ....+.+++++|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566776653 46778888888764332 0 0 0 1 35678999999999998865
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0024 Score=42.97 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=29.4
Q ss_pred cccEEEecccccCcc------cHHHHHHHHHhcccCCCEEEEE
Q 025144 141 FFDAITMGYGLRNVV------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.||+|+|..+..+++ .+..+++++++.|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988866552 3788999999999999999664
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.19 Score=40.83 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=70.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--------
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-------- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------- 135 (257)
....++.+||-+|+|+ |..+...++.++ -.+|..+|+++.-++.|++ +-. ..........+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~Ga-------~~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FGA-------TVTDPSSHKSSPQELAELVE 235 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hCC-------eEEeeccccccHHHHHHHHH
Confidence 4567899999999996 778888888864 3599999999999999988 311 111111111110
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
......+|+.+-... .+..++.....+++||.+++..+..+..
T Consensus 236 ~~~g~~~~d~~~dCsG------~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSG------AEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred hhccccCCCeEEEccC------chHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 122244788775443 3456677788899999988877665443
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.03 Score=46.15 Aligned_cols=53 Identities=28% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
+.+.......+-..|+|+|+|.|++++.+.-.+ +..|.+||-|+...+.|++.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 344444455666799999999999999998664 78999999998777777653
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.19 Score=42.11 Aligned_cols=100 Identities=23% Similarity=0.334 Sum_probs=68.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC-----CCCC-
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL-----PFSD- 139 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~- 139 (257)
.++.+|+=+|||+ |.++..+++.+ .-.+|+++|.++.-++.|++.... ........ +. ....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g 236 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGG 236 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCC
Confidence 3444999999997 88888888875 346999999999999999885421 11111111 10 1112
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
..+|+++=.-. ....+..+.+.++++|.+.+.-.....
T Consensus 237 ~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 237 RGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 36999984333 245788899999999999887665444
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.017 Score=41.77 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH-HHhhhhhhhhccCCCeeEEEccCCC-CCCCCCcccEEEe
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-ASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~ 147 (257)
+.+.+-+|+..-+.-...++. ...++..+|.++--++. .+.++ ..+...|+.. +..-.++||.+.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhe
Confidence 457888888877766655554 24578888876521111 11111 1111122211 1112477999999
Q ss_pred cccccCcc-----c------HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 148 GYGLRNVV-----D------KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 148 ~~~l~~~~-----~------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.++++|.- | -.+.+.++.++|||||.+++..+..++
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 99888771 2 256678899999999999988766544
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.047 Score=44.97 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~ 148 (257)
..+|+|-=+|+|--++..+...+ ..+++..|+||++++.++++++.... .+...++.|...+-. ....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~---~~~~v~n~DAN~lm~~~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG---EDAEVINKDANALLHELHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc---ccceeecchHHHHHHhcCCCccEEec-
Confidence 66999999999988887777743 33999999999999999999865421 356666666655321 2367888853
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-+-.+..++....+.++.+|.+.+..
T Consensus 128 ---DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 ---DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ---CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 334467788888888899999997754
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.077 Score=43.73 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=39.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHh---CC----CceEEEEeCChhHHHHHHhhhhh
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQV---GS----QGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~----~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+....++|+|+|+|.++..+++.+ .| ..++..+|+|++..+.=++.++.
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44556689999999999999888764 22 45899999999988776666654
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.099 Score=44.46 Aligned_cols=112 Identities=12% Similarity=0.018 Sum_probs=67.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CCC-CCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPF-SDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~~D~ 144 (257)
.+..++|+|.|.|.-...+.... +-..+++.||.|..|+............ ...+.+...-+.. ++. ..+.||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCCCcccceee
Confidence 34578889888765443332221 1245899999999999998887754110 0112222211111 232 2455999
Q ss_pred EEecccccCccc---HHHHH-HHHHhcccCCCEEEEEeecCC
Q 025144 145 ITMGYGLRNVVD---KRKAL-EESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 145 v~~~~~l~~~~~---~~~~l-~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
|++.+.++++.. ..... ...++..++|+.+++++....
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999999864 22333 334456688999988875543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.08 Score=46.25 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=63.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-----------C
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-----------L 135 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----------~ 135 (257)
.++.+|+=+|+|. |..+..+++.+ +..++++|.+++.++.++.. ...++..|..+ .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeec
Confidence 4568999999996 67777777775 56799999999887777652 11222222110 0
Q ss_pred --C--------CC--CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 136 --P--------FS--DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 136 --~--------~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+ ++ -..+|+|+....+.-.+.+.-+.+++.+.+|||+.++
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 0 11 2459999876655544455556788899999998865
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.071 Score=42.99 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=53.0
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC--CCcccEEEecc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~ 149 (257)
+++|+-||.|.++.-+.+. + -..+.++|.++.+++..+.+.. .. ++..|+.++... .+.+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998888655 2 3357889999999888877752 22 566777775422 35699999877
Q ss_pred cccCc
Q 025144 150 GLRNV 154 (257)
Q Consensus 150 ~l~~~ 154 (257)
....+
T Consensus 71 PCq~f 75 (275)
T cd00315 71 PCQPF 75 (275)
T ss_pred CChhh
Confidence 65544
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.063 Score=43.28 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 70 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
+.+|.-||.|. |..+..++-- .+++|+.+|.|.+-+.+....+. .++.+...+..++.-.-.++|+++..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~-------~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFG-------GRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhC-------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 35788899885 7777776654 47899999999988877766652 46777777666554333578999876
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
-.+--...|.-..+++.+.+|||+.++
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEE
Confidence 555555677888999999999999885
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.25 Score=41.22 Aligned_cols=122 Identities=18% Similarity=0.140 Sum_probs=78.6
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh-------hhhhccCCCeeEEEc
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-------LVSKACYKNIEWVEG 130 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~~~~~~ 130 (257)
..-+.+.+...++....|+|+|.|.....++..- .-..-.|+++.+..-+.+..+.. ..+.. ...+..+++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~g 258 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHG 258 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeeccc
Confidence 3445556788899999999999999998887763 33467777766555444443321 12221 245788888
Q ss_pred cCCCCC---CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 131 DALDLP---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 131 d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
++.+.. .-....++|+++++... ++...-+.++..-+++|-+++-.....+
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 887642 11245788888776443 3344445688888899998876554433
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.4 Score=37.27 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=69.8
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh------CCCceEEEEeC----ChhHHHHHHhhhhhhhhccCCCeeE
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV------GSQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEW 127 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~ 127 (257)
.+.+++.+.-...-.|+|+|.|.|.-...|.+.+ +|..++|+++. +...++.+.+++...-....-..+|
T Consensus 99 NqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 99 NQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred hHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 3445555555566689999999998877777765 23459999999 7788888887765543222123444
Q ss_pred EEc---cCCCCC-----CCCCcccEEEecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 128 VEG---DALDLP-----FSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 128 ~~~---d~~~~~-----~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
... +.+++. ..++..=+|-+.+.+|++.+ ...+|+. .+.|+|.-.+ +.+
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv-~~E 243 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVV-LVE 243 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEE-EEe
Confidence 442 223321 22233333335566777741 2345554 4577888444 443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.47 Score=32.45 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEEeccccc
Q 025144 78 CGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLR 152 (257)
Q Consensus 78 ~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~ 152 (257)
||.|..+..+++.+..+. +++.+|.+++..+.+++. .+.++.+|..+.. ..-.+.|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 566778888877764444 899999999988777654 4779999998743 22356888876432
Q ss_pred CcccHHHHHHHHHhcccCCCEEEEE
Q 025144 153 NVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 153 ~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
-+.....+....+.+.|...+++.
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 111222333444556677777554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.49 Score=39.01 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=63.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CCC
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFS 138 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 138 (257)
....++.+||..|+| .|..+..+++.. +.++++++.+++..+.+++.- .. .++...-... ...
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g--------~~-~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELG--------AD-EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhC--------CC-EEEcCCCcCHHHHHHHhc
Confidence 346678899998876 477888888875 567999999998887775421 00 1111110010 123
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.+|+++.... ....++.+.+.|+++|.++....
T Consensus 230 ~~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 230 GGGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 456998875321 14567888999999999987643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.21 Score=41.61 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE---ccCCCCCCCCC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE---GDALDLPFSDC 140 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~ 140 (257)
...++.+||=.|+|. |..+..+++.. +. +++++|.+++-++.+++.- --.++. .+..+.....+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~~~g 234 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLAREMG---------ADKLVNPQNDDLDHYKAEKG 234 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHcC---------CcEEecCCcccHHHHhccCC
Confidence 344678999998874 67777777774 44 6999999998888776531 111111 11111111123
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+|+-.-. ....+....+.|++||.++....
T Consensus 235 ~~D~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 235 YFDVSFEVSG------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 5898874322 13456778889999999987654
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.94 Score=40.91 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=62.5
Q ss_pred eEEEecCCCChhHHHHHHH---hCCCceEEEEeCChhHHHHHHhhh---hhhhh---ccCCCeeEEEccCCCCCCCC---
Q 025144 72 NVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQ---DLVSK---ACYKNIEWVEGDALDLPFSD--- 139 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~---~~~~~~~~~~~d~~~~~~~~--- 139 (257)
.|+-+|+|-|-+....++. .+-..+++++|-++........+. ..+.. .....++++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999876555443 234568999999966443333332 12210 00145899999999875331
Q ss_pred --------CcccEEEecccccCccc---HHHHHHHHHhcccC----CCE
Q 025144 140 --------CFFDAITMGYGLRNVVD---KRKALEESFRVLKP----GSR 173 (257)
Q Consensus 140 --------~~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lk~----gG~ 173 (257)
+++|+|++ -.|..+-| -.+.|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999986 22333322 24566677777765 675
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.17 Score=41.03 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=39.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 115 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 115 (257)
..++..|||.-+|+|..+....+. +.+++|+|++++..+.|++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 367889999999999888766544 6799999999999999999975
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.089 Score=40.55 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-hccCCCeeEEEccCCCCC-----CCCCcc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDLP-----FSDCFF 142 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~~-----~~~~~~ 142 (257)
++.++||||.|.-..--.+--+ .-+...+|.|+++..++.|+..+...+ .. ..+++....-..-- --++.|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~--~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLE--RAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcchh--hheeEEeccCcccccccccccccee
Confidence 4568999998876544333222 125689999999999999998875431 11 23444443322211 125789
Q ss_pred cEEEecccccCc
Q 025144 143 DAITMGYGLRNV 154 (257)
Q Consensus 143 D~v~~~~~l~~~ 154 (257)
|..+|+..+|..
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999999865
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.049 Score=46.55 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D 143 (257)
.++.+|||.=|++|.-++..+..++...++++.|.++..++..+++.+..+.. ..+...+.|+..+ +.....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~--~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE--DIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch--hhcccccchHHHHHHhccccccccc
Confidence 34568999999999999988888765569999999999999988887643221 2344555555432 12246799
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|-+ .-+-.+..+|....+.++.||.|.+..
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 9853 233456788999999999999998754
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.15 Score=38.88 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=62.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhh----------------------------
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVS---------------------------- 118 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~---------------------------- 118 (257)
..+-++-|.+||.|.+...+.-..+ .-..+.+-|+++++++.|++++.-..
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 3456999999999998876654321 12389999999999999987643110
Q ss_pred -----------hccCCCeeEEEccCCCCC-----CCCCcccEEEecccccCc---c------cHHHHHHHHHhcccCCCE
Q 025144 119 -----------KACYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNV---V------DKRKALEESFRVLKPGSR 173 (257)
Q Consensus 119 -----------~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~---~------~~~~~l~~~~~~Lk~gG~ 173 (257)
.+......+.+.|+.+.. ......|+|+........ . ....+|..++.+|.++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 001123567888888731 112346999975544333 2 147789999999955555
Q ss_pred EEEE
Q 025144 174 ISVL 177 (257)
Q Consensus 174 l~~~ 177 (257)
+.+.
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.25 Score=34.58 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C-CCCCcccEEEeccccc
Q 025144 79 GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-FSDCFFDAITMGYGLR 152 (257)
Q Consensus 79 G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~ 152 (257)
|.|..+..+++.. +.+++++|.+++-++.+++.- --.++..+-.++ . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-- 67 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEecC--
Confidence 3577888899886 489999999999888887642 122333322221 1 23347999985332
Q ss_pred CcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 153 NVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 153 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
-...++...+.++++|.+++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2567888999999999998877655
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.21 Score=34.94 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=51.2
Q ss_pred CeeEEEccCCCC-CCCCCcccEEEecccccCc-cc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhh
Q 025144 124 NIEWVEGDALDL-PFSDCFFDAITMGYGLRNV-VD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 199 (257)
Q Consensus 124 ~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (257)
.+.+..+|+.+. +--...+|+|+....-... ++ -..+++.+.+.+++||.+..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T----------------------- 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT----------------------- 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE-----------------------
Confidence 345566666441 1112678999875421111 12 27789999999999998853
Q ss_pred hhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 200 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
+-....++..|.++||++.+...+ ++--..+.|.
T Consensus 89 ----------------------ys~a~~Vr~~L~~aGF~v~~~~g~-g~Kr~~~~a~ 122 (124)
T PF05430_consen 89 ----------------------YSSAGAVRRALQQAGFEVEKVPGF-GRKREMLRAV 122 (124)
T ss_dssp ----------------------S--BHHHHHHHHHCTEEEEEEE-S-TTSSEEEEEE
T ss_pred ----------------------eechHHHHHHHHHcCCEEEEcCCC-CCcchheEEE
Confidence 223467889999999997665544 4444455544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.7 Score=35.48 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=70.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---------CCCC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------FSDC 140 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~ 140 (257)
...|+-+|||-= ++...-..+.+..|.-+|. |+.++.-++.++..+.....+.+++..|+.+.. +..+
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 578999999853 3222111112356666665 667776666676654433347899999998432 2244
Q ss_pred cccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.--++++-+++.+++ ...++|+.|.....||..++...
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 456788888888886 46888999999999888886554
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.12 Score=40.02 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
+.+.+++.. ..++..|||.=||+|..+....+. +.+++|+|++++..+.|++
T Consensus 180 l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhh-hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 333444443 456889999999999888776654 6789999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.61 Score=38.81 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
...++.+||-+|||. |..+..+++......+++++|.+++-++.+++ . ...... + +.. ....+|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~--------~~~~~~--~--~~~-~~~g~d~ 225 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A--------DETYLI--D--DIP-EDLAVDH 225 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c--------Cceeeh--h--hhh-hccCCcE
Confidence 346788999999874 55666666642124579999999887777654 1 111111 1 111 1124888
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|+-.-.- +.....+....+.|+++|.+++...
T Consensus 226 viD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 226 AFECVGG---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EEECCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 8732210 0124567788899999999987654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.9 Score=34.02 Aligned_cols=96 Identities=28% Similarity=0.326 Sum_probs=60.4
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CCCCC
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 140 (257)
..++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+++.- ...++.....+. ....+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCC
Confidence 36788999999985 76777777774 578999999887766664431 001111110010 01235
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+++....- ...+..+.+.|+++|.++....
T Consensus 201 ~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 201 GADVVIDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCEEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 69999854321 1456677888899999876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.9 Score=35.63 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=60.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+..++.+||=.|+| .|..+..+++.. +.++++++.+++-++.+++. +. . .++. ..+. ..+.+|
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~----Ga----~-~vi~--~~~~--~~~~~d 225 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALAL----GA----A-SAGG--AYDT--PPEPLD 225 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHh----CC----c-eecc--cccc--Ccccce
Confidence 466788899999976 356667777774 56899999988877776653 11 1 1111 1111 123578
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++..... ...+....+.|+++|.+++...
T Consensus 226 ~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 226 AAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 76543221 2467788899999999987654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.25 Score=38.61 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
..++..|||.=||+|..+....+. +.+++|+|++++..+.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 357889999999999888776654 678999999999999999887543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.094 Score=42.49 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=39.0
Q ss_pred CeeEEEccCCCC--CCCCCcccEEEecccccC------c----------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 124 NIEWVEGDALDL--PFSDCFFDAITMGYGLRN------V----------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 124 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~------~----------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+..++++|..+. .++++++|+|++.-.... . .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788888774 356789999998654321 0 01256889999999999999875
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.2 Score=35.02 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEEec
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITMG 148 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~ 148 (257)
+++|+-||.|.+..-+.+. + ...+.++|+++.+.+.-+.+. + .....|+.++. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEec
Confidence 6899999999999988766 2 347899999999888877776 4 78889998864 443 59999987
Q ss_pred ccccCc
Q 025144 149 YGLRNV 154 (257)
Q Consensus 149 ~~l~~~ 154 (257)
.....+
T Consensus 69 pPCQ~f 74 (335)
T PF00145_consen 69 PPCQGF 74 (335)
T ss_dssp ---TTT
T ss_pred cCCceE
Confidence 665554
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.4 Score=36.92 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=60.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++-.+.+++. + --.++...-.+. .
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~i~~~ 240 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREF----G-----ATHTVNSSGTDPVEAIRAL 240 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEEcCCCcCHHHHHHHH
Confidence 4567788999998864 66777777774 55 599999998887777543 1 111221111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+-.-. . ...+....+.++++|.+++...
T Consensus 241 ~~~~g~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 241 TGGFGADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred hCCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 12235898874221 1 2456677788999999987654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.095 Score=41.98 Aligned_cols=94 Identities=15% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCeEEEecCCCChhHH-HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
+..|+|+=+|.|+++. ++... .-..|.++|.+|..++..++.++..... .+..+..+|-.... +....|-|...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~--~r~~i~~gd~R~~~-~~~~AdrVnLG 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVM--DRCRITEGDNRNPK-PRLRADRVNLG 269 (351)
T ss_pred cchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchH--HHHHhhhccccccC-ccccchheeec
Confidence 4689999999999998 55544 2348999999999999999887654322 45666777766643 35667777653
Q ss_pred ccccCcccHHHHHHHHHhcccCCC
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGS 172 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG 172 (257)
. +|.-++......++|||.|
T Consensus 270 L----lPSse~~W~~A~k~Lk~eg 289 (351)
T KOG1227|consen 270 L----LPSSEQGWPTAIKALKPEG 289 (351)
T ss_pred c----ccccccchHHHHHHhhhcC
Confidence 3 3333334444556777733
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.44 Score=40.93 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-------CCCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-------PFSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~ 141 (257)
.+..+|-+|-|.|.+...+...+ |..++++++++|+|++.+...+.-... .+..+.-.|..+. ...+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~---~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQS---DRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhh---hhhhhhHhhchHHHHHHhhccccccC
Confidence 34578999999999999988776 678999999999999999988643221 2333333333321 123567
Q ss_pred ccEEEeccc---ccCccc------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 142 FDAITMGYG---LRNVVD------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 142 ~D~v~~~~~---l~~~~~------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
||++...-. .|-... ...+|..++.+|.|.|.+++.-..
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 999885211 222221 356788999999999999654433
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.35 E-value=1 Score=37.61 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeC---ChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCC
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDF---SKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 140 (257)
..++.+||=+|+|. |.++..+++.. +.++++++. +++-++.+++. + ...+...-.+. ....+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~----G------a~~v~~~~~~~~~~~~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEEL----G------ATYVNSSKTPVAEVKLVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHc----C------CEEecCCccchhhhhhcC
Confidence 45678999999874 77778888874 568999986 56555555432 1 11111110110 01124
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+|+|+-.-. -...+....+.|+++|.+++....
T Consensus 238 ~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 238 EFDLIIEATG------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CCCEEEECcC------CHHHHHHHHHHccCCcEEEEEecC
Confidence 6898875332 123677888999999998776543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.9 Score=36.37 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 137 (257)
..+.++.+||=.|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+-.+. ..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~G---------a~~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELG---------ATATVNAGDPNAVEQVREL 255 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcC---------CceEeCCCchhHHHHHHHH
Confidence 4567788999999864 66777777774 55 6999999998887775431 111221111111 01
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+.+|+|+-.-. -...+....+.++++|.++....
T Consensus 256 ~~~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 256 TGGGVDYAFEMAG------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 1235898874221 13456677788999999877654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.22 Score=40.79 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=77.0
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH-------HHhhhhhhhhccCCCeeEEEccC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-------ASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-------a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
.+.......+|.-|.|-=.|||.+....+.. ++.|+|.|++-.++.. .+.++++.+.. ..-+.++.+|.
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~ 274 (421)
T KOG2671|consen 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADF 274 (421)
T ss_pred HHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecc
Confidence 3344556789999999999999998887765 6899999998887762 22344443311 02366788888
Q ss_pred CCCCC-CCCcccEEEeccccc------------------------Cccc---------HHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDLPF-SDCFFDAITMGYGLR------------------------NVVD---------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~~~-~~~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+.+. .+..||.|+|..... |.+. ...+|.-..+.|..||++++.-
T Consensus 275 sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 275 SNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 87653 356799999843311 1111 2334666778888899887653
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.3 Score=35.39 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC---CCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~ 144 (257)
-.+..|+-+| ..-..++.++-. +...++..+|++...+...++..++.+. .++..+..|+.+ |+| ...||+
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~---~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGY---NNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCc---cchhheeehhcc-cChHHHHhhCCe
Confidence 3466799998 333333333322 3455899999999999988887766553 579999999988 333 367998
Q ss_pred EEecccccCcccHHHHHHHHHhcccCC---CEEEEEe
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPG---SRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~g---G~l~~~~ 178 (257)
.+... -..++....++.+=...||.- |++.+..
T Consensus 225 fiTDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 225 FITDP-PETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred eecCc-hhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 87532 233334555666666677665 5665543
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.93 E-value=3 Score=34.53 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC---CC-C-C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DL-P-F 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-~-~ 137 (257)
....++.+||=+|+|. |..+..+++.. +.+ +++++.+++-.+.+++.- --.++...-. .+ . .
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~g---------a~~~i~~~~~~~~~~~~~~ 227 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALG---------ADFVINSGQDDVQEIRELT 227 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhC---------CCEEEcCCcchHHHHHHHh
Confidence 4567788999998763 56667777774 456 999999888777765431 1111111110 00 0 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+|+|+-... ....+....+.|+++|.+++...
T Consensus 228 ~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 228 SGAGADVAIECSG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 2236899984321 13345667788999999977653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.1 Score=33.68 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=57.2
Q ss_pred HHHHHHHhhhCCCCC-CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 56 IWKRMAVSWSGAKTG-DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
.+...+...+...++ ..|+.+|||-=.....+.... ++..+.-+|. |++++.-++.++..+.....+.+++..|+.+
T Consensus 64 ~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 64 YIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp HHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred HHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 333444444433334 389999999766655555431 2557777776 5666666666655422111346679999986
Q ss_pred CC---------CCCCcccEEEecccccCcc--cHHHHHHH
Q 025144 135 LP---------FSDCFFDAITMGYGLRNVV--DKRKALEE 163 (257)
Q Consensus 135 ~~---------~~~~~~D~v~~~~~l~~~~--~~~~~l~~ 163 (257)
.. +..+..-++++-.++.+++ +...+|+.
T Consensus 142 ~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 142 DSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp HHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred hhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 31 2345556777777788775 23444443
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=4.4 Score=33.84 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=61.9
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cCCC-C-C
Q 025144 65 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L-P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-~ 136 (257)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++.+ + --.++.. +..+ . .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~l---G-----a~~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKL---G-----FDEAFNYKEEPDLDAALKR 223 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhc---C-----CCEEEECCCcccHHHHHHH
Confidence 45678889999987 3688888888885 578999998887777665332 1 1112221 1110 0 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+-.-. ...+....+.|+++|.+++..
T Consensus 224 ~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 224 YFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred HCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 11246898874321 246677888999999987654
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.1 Score=31.19 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=47.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 147 (257)
...+|+|+|-|.-......++.. +..++++|+.+. .+. ..+.++..|+.+.... =...|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----------~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----------EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----------cCcceeeecccCCCHHHhcCCcEEEE
Confidence 34499999999865544444442 589999999886 111 3678999999885311 135899998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
... -+++...+.++.+. -|.-+++..+..
T Consensus 77 iRP---P~El~~~il~lA~~--v~adlii~pL~~ 105 (127)
T PF03686_consen 77 IRP---PPELQPPILELAKK--VGADLIIRPLGG 105 (127)
T ss_dssp ES-----TTSHHHHHHHHHH--HT-EEEEE-BTT
T ss_pred eCC---ChHHhHHHHHHHHH--hCCCEEEECCCC
Confidence 554 23445555555553 356677766554
|
; PDB: 2K4M_A. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.39 Score=40.55 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCeeEEEccCCCCC--CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 123 KNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 123 ~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+++++.++++.+.. .+++++|.+++.....+++ +..+.++.+.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 68999999998752 5679999999999999886 467789999999999999988665543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.15 E-value=2.1 Score=29.26 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=54.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~ 148 (257)
..+|+|+|.|-=......++.. +..++++|+++. +.. ..++++..|+.+.... -...|+|++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-------~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-------EGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-------ccceEEEccCCCccHHHhhCccceeec
Confidence 4499999988754443333332 589999999875 111 3688999999985421 1447888764
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
- -.+++...+-.+.+. .|..+++.....
T Consensus 78 R---pppEl~~~ildva~a--Vga~l~I~pL~G 105 (129)
T COG1255 78 R---PPPELQSAILDVAKA--VGAPLYIKPLTG 105 (129)
T ss_pred C---CCHHHHHHHHHHHHh--hCCCEEEEecCC
Confidence 3 233444444444443 344565654443
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.15 E-value=4.2 Score=33.55 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=57.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc---CCCCCCCCCccc
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDLPFSDCFFD 143 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D 143 (257)
++.+||-.|+|. |..+..+++.. +. .+++++.++...+.+++.- --.++..+ ........+.+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMG---------ADETVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcC---------CCEEEcCCchhhhhhhccCCCcc
Confidence 778899988775 66777777774 45 7899998888777554421 00111111 111111123589
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++-... ....+..+.+.|+++|.++...
T Consensus 234 ~vld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 9985432 1345778889999999987654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.08 E-value=2.8 Score=33.75 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCC-C-C-CCC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALD-L-P-FSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~-~-~~~ 139 (257)
...++.+||=+|+|. |..+..+++.. +.+ ++++|.+++-++.+++.-. -.++.. +... . . ...
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSFGA---------TALAEPEVLAERQGGLQNG 185 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcCC---------cEecCchhhHHHHHHHhCC
Confidence 345788999998864 66777777774 454 8899988887776655311 011110 0000 0 0 122
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+|+++-.-. ....+....+.++++|.+++...
T Consensus 186 ~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 186 RGVDVALEFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 35898874221 13467778889999999987664
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=90.99 E-value=6 Score=32.50 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=61.8
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC----
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL---- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~---- 135 (257)
...+..++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++. + --.++..+-. ..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKL----G-----FDVAFNYKTVKSLEETL 200 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CCEEEeccccccHHHHH
Confidence 3456778889998884 4688888888874 56899999888877776542 1 1112211110 11
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+.+|+|+-.-. ...+....+.|+++|.++...
T Consensus 201 ~~~~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 201 KKASPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHhCCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEec
Confidence 112346898874221 134577888999999998654
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=90.82 E-value=2.9 Score=35.81 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=57.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.++.+|+=+|+|. |......++.+ +.+|+++|.++.-.+.|+.. ...... ..+. . ...|+|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~----------G~~~~~--~~e~-v--~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME----------GYEVMT--MEEA-V--KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc----------CCEEcc--HHHH-H--cCCCEEE
Confidence 4688999999996 66666666664 56899999998776666542 111111 1111 1 2479998
Q ss_pred ecccccCcccHHHHHHH-HHhcccCCCEEEEEee
Q 025144 147 MGYGLRNVVDKRKALEE-SFRVLKPGSRISVLDF 179 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~-~~~~Lk~gG~l~~~~~ 179 (257)
..-. ....+.. ..+.+|+||.++....
T Consensus 263 ~atG------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTG------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCC------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 6321 2334544 4788999999876653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=5.2 Score=32.06 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=60.7
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----CCCcc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----SDCFF 142 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~~~ 142 (257)
.+|=-|+ |.+...+++.+..+.+|+.+|.+++.++...+.++..+ .++.++..|+.+.. + ..+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG----FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4444453 56888888777667899999988766655544443221 36778888987742 1 12568
Q ss_pred cEEEecccccCc-cc-----------HHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNV-VD-----------KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~-~~-----------~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+++.+...... .+ ...+++.+.+.++++|.++++
T Consensus 78 d~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 78 TGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred CEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999976654322 12 123355566666666655443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.64 Score=39.23 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=53.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
++.+|+=+|+| .|..+...+..+ +.+|+++|.+++-++.+...+. ..+.....+..++.-.-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEE
Confidence 44679999998 466666666664 5689999998876665544331 1111111111111100135899996
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
.-.......+.-+-+...+.++|++.++-
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 53221111121122455566788887654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.85 E-value=6.9 Score=32.02 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=61.4
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 136 (257)
..+..++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++. + --.++...-.+. .
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~----G-----a~~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKEL----G-----FDAVFNYKTVSLEEALKE 206 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CCEEEeCCCccHHHHHHH
Confidence 345677889998884 4577888888875 56899999888877776552 1 111222111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+-.-. ...+....+.|+++|.++...
T Consensus 207 ~~~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 207 AAPDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HCCCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 11245898874221 245678888999999987653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.6 Score=34.23 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=54.2
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc--------------CCCeeEEEccCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALDL 135 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~d~~~~ 135 (257)
.+|--||+|+ |.-....... .+.+|+.+|.+++.++.+.+++...-... ..+++ ...|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 3788899985 4333333222 37899999999999988776643211000 01111 22333221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcc-cCCCEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRIS 175 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~ 175 (257)
...|+|+-. +....+-...++..+-+.+ +|+..+.
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 346887743 3333333456677777777 5665553
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.5 Score=33.73 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=48.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
+.+.+....+.-.+.-|.+||.|.|..++.+.+. .-.....++.+...+.-.+...+..+ .+..+..+|+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC----cceEEecccccee
Confidence 3444555555556678999999999999999876 23478888887766555444333222 3566666666543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.5 Score=37.10 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=48.0
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+||=||||. |....+.+.+. ...+|+..|-|.+....+..... .+++..+.|+.+.+ .- ..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li-~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALI-KDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHH-hcCCEE
Confidence 4789999964 55554443331 23799999999887777665431 47889999998863 11 335999
Q ss_pred Eeccc
Q 025144 146 TMGYG 150 (257)
Q Consensus 146 ~~~~~ 150 (257)
+....
T Consensus 73 In~~p 77 (389)
T COG1748 73 INAAP 77 (389)
T ss_pred EEeCC
Confidence 86543
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.59 E-value=6.8 Score=32.13 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=60.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcc
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFF 142 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 142 (257)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++.- . . .++...-.... ...+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g----~----~-~~~~~~~~~~~~~~~~~~ 226 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLG----A----D-EVVDSGAELDEQAAAGGA 226 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhC----C----c-EEeccCCcchHHhccCCC
Confidence 456778899999887 577777777774 568999999888877764321 0 0 11111100000 012458
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+++.... ....+..+.+.|+++|.++...
T Consensus 227 d~vi~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 98875321 1245677788999999987664
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=89.54 E-value=13 Score=33.01 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC---CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CCC-CCCccc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFD 143 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D 143 (257)
|+..|.|..||+|.+.....+..+ ....+++.+..+.+...+..+..-.+... .......+|-.. ..+ ...+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~-~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-ANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc-cccCcccCCcCCCccccccccCC
Confidence 557999999999998876544321 12469999999999988887642211100 122232333322 111 234578
Q ss_pred EEEecccccC---------------------cc----cHHHHHHHHHhcccCCCEEEEE
Q 025144 144 AITMGYGLRN---------------------VV----DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~---------------------~~----~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.|+++..+.. ++ .-..++..+..+|++||...++
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 8776543211 11 1244577788899999975544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.3 Score=37.44 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+.+.+.++.+||-|++|-......+.+. | .+|++||+|+......+-+...
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHHHH
Confidence 345678899999999987655555555432 3 6999999999988877766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.25 E-value=6 Score=33.49 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=60.7
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--C-----
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--L----- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~----- 135 (257)
....++.+||=+|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++...-.+ +
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~----G-----a~~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEM----G-----ITDFINPKDSDKPVHERIR 262 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHc----C-----CcEEEecccccchHHHHHH
Confidence 4567888999999874 66777777774 45 699999999888877543 1 11122211100 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
....+.+|+|+-.-. ....+....+.+++| |.+++...
T Consensus 263 ~~~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 263 EMTGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred HHhCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 011236898874322 134566777788886 98876554
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=6.3 Score=32.73 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=58.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC---C--CC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD---L--PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~--~~ 137 (257)
....++.+||=.|+|. |..+..+++.. +.+ +++++.+++-.+.+++. + --.++..+-.+ . ..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSL----G-----AMQTFNSREMSAPQIQSVL 224 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc----C-----CceEecCcccCHHHHHHHh
Confidence 4556788999998864 66677777774 454 78999888877766432 1 11111111100 0 01
Q ss_pred CCCccc-EEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFD-AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D-~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+| +|+-.- .-...+....+.|++||.+++...
T Consensus 225 ~~~~~d~~v~d~~------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 225 RELRFDQLILETA------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred cCCCCCeEEEECC------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 223577 554211 113567788899999999987654
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=88.90 E-value=7.6 Score=28.59 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CC---CCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS---DCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~~D 143 (257)
.+..+|+-|||=+- -..+.+...++.++...|++..--. .+ ++ .+..-|..... ++ .++||
T Consensus 24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D~RF~~--------~~----~~-~F~fyD~~~p~~~~~~l~~~~d 88 (162)
T PF10237_consen 24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYDRRFEQ--------FG----GD-EFVFYDYNEPEELPEELKGKFD 88 (162)
T ss_pred CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeecchHHh--------cC----Cc-ceEECCCCChhhhhhhcCCCce
Confidence 34579999987653 3334332235678999998764322 11 23 56677776532 11 47899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|++.-.+-.-+-..+....++.++|+++.+++.+
T Consensus 89 ~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 89 VVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 99998887333334555666666778888887654
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=88.86 E-value=7.9 Score=32.02 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCCCC--CeEEEecC--CCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 66 GAKTG--DNVLDVCC--GSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 66 ~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
+..++ .+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++.+. --.++..+-.++
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lG--------a~~vi~~~~~~~~~~i~ 218 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELG--------FDAAINYKTDNVAERLR 218 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcC--------CcEEEECCCCCHHHHHH
Confidence 44544 78988886 4677888888875 55 79999988877776655331 111222111111
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++.+|+|+-... . ..+....+.|+++|.++...
T Consensus 219 ~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 219 ELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 011246899874321 1 23467788899999987653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.72 E-value=8.1 Score=31.85 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=61.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
.....++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.- --.++...-.++ .
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~ 222 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELG---------ADDTINVGDEDVAARLREL 222 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhC---------CCEEecCcccCHHHHHHHH
Confidence 34667788999998764 67778888874 678999988887777664321 111111111110 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+...+|+++.... ....+..+.+.|+++|.++...
T Consensus 223 ~~~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 223 TDGEGADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred hCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 12345899985421 1345677888999999987654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=88.65 E-value=3.5 Score=33.75 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
++.+||=+|+|. |.++..+++.. +. .+.++|.+++.++.+... .++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEE
Confidence 466899889874 77788888875 44 477788877665554321 011 11110 124589887
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
-.-. -...+..+.+.|+++|.+++.-.
T Consensus 206 d~~G------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCC------CHHHHHHHHHhhhcCcEEEEEee
Confidence 4322 23466788889999999987654
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.18 E-value=7 Score=32.10 Aligned_cols=98 Identities=24% Similarity=0.247 Sum_probs=60.7
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CC
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PF 137 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 137 (257)
.....++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++.- --.++..+-.+. ..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLG---------ATETVDPSREDPEAQKED 222 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhC---------CeEEecCCCCCHHHHHHh
Confidence 44567788999998753 66677777774 455 888998888777664321 112222221111 11
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+.+|+++.... ....+....+.|+++|.++...
T Consensus 223 ~~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 223 NPYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred cCCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 2356899985321 1356777788899999987654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.07 E-value=11 Score=31.32 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=62.8
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CC-C
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PF-S 138 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~-~ 138 (257)
..+..++.+||=.|+ |.|.++..|++.+ +..+.++-.+++-.+.+++.-.. .-+.+...|+.+- .. .
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd------~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGAD------HVINYREEDFVEQVRELTG 208 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCC------EEEcCCcccHHHHHHHHcC
Confidence 456777899999995 4567888999885 44666776666555544443211 1122233332221 12 2
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
...+|+|+-.-. ...+.+..+.|+++|.++.....
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 236999985432 45667788899999998776543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=87.88 E-value=2 Score=34.29 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=60.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhC----CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SD 139 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~ 139 (257)
+.++..++|+|||.|.++.++++.+. +...++.||-...-. .+..+....... +.+.-+..|+.++.+ +.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~--~~~~R~riDI~dl~l~~~~~ 92 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESE--PKFERLRIDIKDLDLSKLPE 92 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCC--CceEEEEEEeeccchhhccc
Confidence 35677999999999999999998863 346899999744222 222222211100 245666667666531 11
Q ss_pred ----CcccEEEecccccCcccHHHHHHHHHhccc-------CCCEEEEEeec
Q 025144 140 ----CFFDAITMGYGLRNVVDKRKALEESFRVLK-------PGSRISVLDFN 180 (257)
Q Consensus 140 ----~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk-------~gG~l~~~~~~ 180 (257)
..-=++++-+....-.| -.|+.+.+..+ ..|.++....+
T Consensus 93 ~~~~~~~vv~isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~CCH 142 (259)
T PF05206_consen 93 LQNDEKPVVAISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAPCCH 142 (259)
T ss_pred ccCCCCcEEEEEccccccchh--HHHHhhccCccccccCCccCeEEEEeCCC
Confidence 11123444444333333 34555554443 56777665543
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.96 Score=40.12 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------C
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F 137 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~ 137 (257)
.+.+...|||+||.+|.+....++.++.+.-|+|+|+-|-- ..+++...+.|+..-. .
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHH
Confidence 34677899999999999999999998888899999986521 0145555555554321 1
Q ss_pred CCCcccEEEeccc----ccCccc-------HHHHHHHHHhcccCCCEEE
Q 025144 138 SDCFFDAITMGYG----LRNVVD-------KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 138 ~~~~~D~v~~~~~----l~~~~~-------~~~~l~~~~~~Lk~gG~l~ 175 (257)
..-+.|+|+...+ ..+..| ....++-....|+.||.++
T Consensus 107 ~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 1234577764222 111112 2334666677888899853
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=29.13 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 138 (257)
+.+||-.|++ |.....+++.+ ..+.+|++++.+++-.+...+..... .++.++..|+.+.. + .
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5688888874 54555554443 24679999998877665543333221 36788889888642 0 0
Q ss_pred CCcccEEEecccccCc---cc--------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNV---VD--------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~---~~--------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..|.++.+...... .+ ...+++.+.+.++++|.+++..
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1346888765542211 01 1233555666667788776654
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.71 E-value=7.5 Score=32.13 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=57.8
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
.+..++.+||-.|+| .|..+..+++.. + ..+.+++.++...+.+++.- -..++...-.+. .
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~i~~~ 231 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEAG---------ATDIINPKNGDIVEQILEL 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhC---------CcEEEcCCcchHHHHHHHH
Confidence 345677889887775 366777777775 4 37888887776666554321 111111111110 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+.+.+|+++-... ....+....+.|+++|.++...
T Consensus 232 ~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 232 TGGRGVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cCCCCCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 12356898885321 1246777888999999987553
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=87.71 E-value=6.8 Score=31.19 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=59.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.-.. ..+ ....- . ......
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~------~~~--~~~~~-~-~~~~~~ 159 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPA------DPV--AADTA-D-EIGGRG 159 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCC------ccc--cccch-h-hhcCCC
Confidence 34567788999998865 66777777775 455 99999888877765543100 111 11000 0 012346
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+++-... ....+....+.++++|.++...
T Consensus 160 ~d~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 160 ADVVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCEEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 898875321 1235677788899999987654
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.64 E-value=1.4 Score=32.08 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=25.4
Q ss_pred EecCCCC--hhHHHHH-HHhCCCceEEEEeCChhHHHHHHhh
Q 025144 75 DVCCGSG--DLSFLLS-EQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 75 diG~G~G--~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
|||++.| .....+. +..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2345678999999999999888888
|
; PDB: 2PY6_A. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=87.62 E-value=3 Score=30.00 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=48.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
.+........+ .-|||+|=|.|+.--+|.+.+ |+.++.++|-.-..-. .-.+ +.-.++.+|+.+. +
T Consensus 19 ~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp------~~~P----~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 19 NWAAAQVAGLP-GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHP------SSTP----PEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G------GG-------GGGEEES-HHHHHHH
T ss_pred HHHHHHhcCCC-CceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCC------CCCC----chHheeeccHHHHhHH
Confidence 33333333333 479999999999999999997 7889999995221100 0000 2345677776542 1
Q ss_pred --CCCCcccEEEecccccCccc----HHHHHHHHHhcccCCCEEEE
Q 025144 137 --FSDCFFDAITMGYGLRNVVD----KRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~ 176 (257)
....+.-++......++-+. ...+-.-+..+|.|||.++-
T Consensus 87 ~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 87 LARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 11122223333222332221 11223345668899998864
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.57 E-value=6.3 Score=29.52 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=57.0
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-----hc---------cCCCeeEEEccCCCCC
Q 025144 72 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-----KA---------CYKNIEWVEGDALDLP 136 (257)
Q Consensus 72 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-----~~---------~~~~~~~~~~d~~~~~ 136 (257)
+|.=+|+|+ |.-...+... .+.+|+.+|.+++.++.+++++...- .. ...++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 366788875 5433333333 37899999999999988887765410 00 011333 34454443
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...|+|+=. +...++-...+++++.+.+.|+-.|.-.+
T Consensus 77 ---~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 77 ---VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 147888632 23344445778999999999988775443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.52 E-value=6 Score=33.22 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccE
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 144 (257)
..++.+||-.|+|. |..+..+++.. +.++++++.+++....+.+.+ + --.++.. +........+.+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~---G-----a~~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRL---G-----ADSFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhC---C-----CcEEEcCCCHHHHHhhcCCCCE
Confidence 45678888898874 77777788775 567888887765433332222 1 0111111 10011000124788
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|+-.-. ....+....+.|+++|.++....
T Consensus 251 vid~~g------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 251 IIDTVS------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEECCC------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 874321 13356778889999999887643
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.42 E-value=10 Score=31.40 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=60.6
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC------
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD------ 134 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------ 134 (257)
......++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. + --.++..+-.+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~~~ 224 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKEL----G-----ATHTVNVRTEDTPESAE 224 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHc----C-----CcEEeccccccchhHHH
Confidence 345667888898888765 67777788774 555 88888887776666442 1 11111111111
Q ss_pred -C--CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 -L--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 -~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+ ......+|+|+-... ....+....+.|+++|.++...
T Consensus 225 ~~~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 225 KIAELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 0 122345899985432 1235677888999999987654
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.17 E-value=9.8 Score=32.19 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=58.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc-----CCC-C-
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~- 135 (257)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++-.+.+++. +. -.++... ... +
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~l----Ga-----~~~i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKTF----GV-----TDFINPNDLSEPIQQVIK 257 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc----CC-----cEEEcccccchHHHHHHH
Confidence 4567788999998864 66677777774 44 588999888877766442 11 1111111 000 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
....+.+|+|+-.-. ....+....+.+++| |.+++...
T Consensus 258 ~~~~~g~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 258 RMTGGGADYSFECVG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHhCCCCCEEEECCC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 011235898874321 123566777888998 99876543
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=87.06 E-value=1.9 Score=34.89 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=23.5
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.||+|++....-++-.+. +.++++|+|.|++-.
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVET 254 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEc
Confidence 6799999766644443323 677889999986643
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.05 E-value=12 Score=31.53 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=60.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc-----CCC-C
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~ 135 (257)
.....++.+||=.|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++... ... +
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~----G-----a~~~i~~~~~~~~~~~~v 248 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKKL----G-----ATDCVNPNDYDKPIQEVI 248 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh----C-----CCeEEcccccchhHHHHH
Confidence 34567788999999864 66777788774 55 799999999888877543 1 11111110 000 0
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+++-.-. -...+....+.++++ |.+++...
T Consensus 249 ~~~~~~g~d~vid~~G------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 249 VEITDGGVDYSFECIG------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred HHHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 011235888874321 134566777888886 98876654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.89 E-value=11 Score=31.38 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=60.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C-
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P- 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~- 136 (257)
....++.+||-.|+| .|..+..+++.. +. .++++|.+++..+.+++. + --.++..+-.+. .
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~ 230 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEY----G-----ATDIVDYKNGDVVEQILKL 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc----C-----CceEecCCCCCHHHHHHHH
Confidence 456778899999876 366777777775 44 589999988777666542 1 111221111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+++-... ....+..+.+.|+++|.++....
T Consensus 231 ~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 231 TGGKGVDAVIIAGG------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred hCCCCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEecc
Confidence 12345898874221 13467788889999999876543
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=86.68 E-value=15 Score=30.41 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=62.2
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cCCC-C-
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L- 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~- 135 (257)
..+..++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++.+ +. . .++.. +..+ .
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~l---Ga---~--~vi~~~~~~~~~~~i~ 215 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKL---GF---D--DAFNYKEEPDLDAALK 215 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CC---c--eeEEcCCcccHHHHHH
Confidence 346678889999986 4577888888874 678999998887777766533 10 1 11211 1110 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+.+|+|+-... ...+....+.|+++|.++...
T Consensus 216 ~~~~~gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFPNGIDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCCCCcEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 011246898874321 245678889999999987653
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=86.44 E-value=15 Score=30.39 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=59.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC---CC-C-
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DL-P- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-~- 136 (257)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. + -..++..+-. .+ .
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~----g-----~~~~~~~~~~~~~~~~~~ 222 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAREL----G-----ADDTINPKEEDVEKVREL 222 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHc----C-----CCEEecCccccHHHHHHH
Confidence 34566788999998765 66777777774 455 99998888776665432 1 1111111110 00 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+++..- .....+..+.+.|+++|.++...
T Consensus 223 ~~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1223589998531 12346678888999999987654
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=86.40 E-value=2.1 Score=35.29 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=49.0
Q ss_pred EEEecCCCChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEeccc
Q 025144 73 VLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 150 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 150 (257)
|+|+-||.|.++.-+.+. +.+ +.++|+++...+.-+.+. +. .++..|+.++.. .-..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999888654 355 567999998888777765 23 445677776542 1235899987655
Q ss_pred ccCc
Q 025144 151 LRNV 154 (257)
Q Consensus 151 l~~~ 154 (257)
...+
T Consensus 69 Cq~f 72 (315)
T TIGR00675 69 CQPF 72 (315)
T ss_pred Cccc
Confidence 5444
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.32 E-value=14 Score=30.10 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=58.7
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
..+..++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ + +. . ... +.... ...+.+
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~-~---g~----~-~~~--~~~~~-~~~~~~ 215 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARR-L---GV----E-TVL--PDEAE-SEGGGF 215 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH-c---CC----c-EEe--Ccccc-ccCCCC
Confidence 34567788999887653 55556666664 5679999988888877765 2 11 0 111 11111 233569
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+++-... ....+....+.|+++|.++..
T Consensus 216 d~vid~~g------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 216 DVVVEATG------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CEEEECCC------ChHHHHHHHHHhhcCCEEEEE
Confidence 99985321 134567778889999998763
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.19 E-value=4.5 Score=32.18 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=61.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.++..-.|+|+-+|.++-.|.++ +..|+++|..+ |.+..... +.++-...|...+.......|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-ma~sL~dt---------g~v~h~r~DGfk~~P~r~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-MAQSLMDT---------GQVTHLREDGFKFRPTRSNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccch-hhhhhhcc---------cceeeeeccCcccccCCCCCceEE
Confidence 467889999999999999999877 57899999643 43333222 578888888887754346688888
Q ss_pred ecccccCcccHHHHHHHHHhcccC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKP 170 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~ 170 (257)
|..+ +.+.++-..+...|..
T Consensus 276 CDmV----EkP~rv~~li~~Wl~n 295 (358)
T COG2933 276 CDMV----EKPARVAALIAKWLVN 295 (358)
T ss_pred eehh----cCcHHHHHHHHHHHHc
Confidence 7554 3455555555555553
|
|
| >PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins | Back alignment and domain information |
|---|
Probab=86.10 E-value=1.5 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeecCceeEEE
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 253 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~ 253 (257)
-++.++++++++++||+++..+....+.+.++
T Consensus 95 Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l~ 126 (127)
T PF10017_consen 95 KYSPEEFEALAEQAGLEVEKRWTDPKGDFSLY 126 (127)
T ss_pred CcCHHHHHHHHHHCCCeeEEEEECCCCCeEEE
Confidence 35889999999999999999998888777665
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.83 E-value=0.64 Score=39.29 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..++..|-|+-||.|-++..++.. +..|++.|.++++++..+.+++...... .++.++..|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~-~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDP-SAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccch-hheeeecccHHH
Confidence 467889999999999999999876 5899999999999999998875432220 247777777654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=12 Score=29.61 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 137 (257)
++.++|-.|+ +|..+..+++.+ ..+.+|++++.+++.++...+.+...+ .++.++..|+.+.. +
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCCHHHHHHHHHHHHH
Confidence 4567887775 555555554433 246789999988776655444433221 35677888887632 0
Q ss_pred CCCcccEEEecc
Q 025144 138 SDCFFDAITMGY 149 (257)
Q Consensus 138 ~~~~~D~v~~~~ 149 (257)
..+..|+++.+.
T Consensus 83 ~~~~iD~vi~~a 94 (264)
T PRK07576 83 EFGPIDVLVSGA 94 (264)
T ss_pred HcCCCCEEEECC
Confidence 124589998654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=13 Score=29.35 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=44.9
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 138 (257)
+.++|-.|+ +|.+...+++.+ ..+.+|+.+|.+++.++...+.. + .++.++.+|+.+.. + .
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G----ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 457777775 455555555443 23678999998876554443332 1 46788899998742 0 0
Q ss_pred CCcccEEEeccc
Q 025144 139 DCFFDAITMGYG 150 (257)
Q Consensus 139 ~~~~D~v~~~~~ 150 (257)
.+..|+++.+..
T Consensus 78 ~g~id~lv~~ag 89 (261)
T PRK08265 78 FGRVDILVNLAC 89 (261)
T ss_pred hCCCCEEEECCC
Confidence 146899887654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=85.05 E-value=16 Score=32.76 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=54.2
Q ss_pred CeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+||| ..+..+++.+. .+.+++.+|.+++.++.+++ .....+.+|..+.. ..-+++|.+
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----------~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----------RGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----------CCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 456666665 45555555442 35789999999988887764 36789999998742 223568876
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++.-. .-.+....... .+...|+..++..
T Consensus 486 iv~~~--~~~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 486 LLTIP--NGYEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred EEEcC--ChHHHHHHHHH-HHHHCCCCeEEEE
Confidence 64221 10111122333 3444666666544
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.85 E-value=12 Score=30.81 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=59.8
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCC----CCC
Q 025144 66 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLP----FSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~----~~~ 139 (257)
+..|+.+|-=+|.| -|.++..+++.+ +.+|+++|-+..--+.+-+.+ +. ...+.-. |..... .-+
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~~L---GA----d~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIKSL---GA----DVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHHhc---Cc----ceeEEecCCHHHHHHHHHhhc
Confidence 44578777777654 799999999985 789999999876666555554 21 1111111 111110 113
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.-.|.+... + ...+..+.+.||++|.++++....
T Consensus 249 g~~~~v~~~-a-------~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 249 GGIDTVSNL-A-------EHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred Ccceeeeec-c-------ccchHHHHHHhhcCCEEEEEeCcC
Confidence 334444422 1 234566778899999998876543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=84.83 E-value=3.1 Score=29.49 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=44.5
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.-.+.++|=+|+|. |......+...+ -.+++.+.-+.+-.+...+.+.. ..+.....+-.. -....+|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~~~------~~~~~~~~~~~~--~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALG-AKEITIVNRTPERAEALAEEFGG------VNIEAIPLEDLE--EALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHTG------CSEEEEEGGGHC--HHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHcCc------cccceeeHHHHH--HHHhhCCeE
Confidence 34578999999863 444433333322 23699999887655554444411 345555544322 112469999
Q ss_pred EecccccCc
Q 025144 146 TMGYGLRNV 154 (257)
Q Consensus 146 ~~~~~l~~~ 154 (257)
+..-...+.
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 976655544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=8.3 Score=34.99 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=55.6
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+|+| ..+..+++.+ ..+.+++.+|.+++.++.+++. ...++.+|..+.. ..-++.|++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 356666554 4555555443 1357999999999988877642 5678999998753 223567887
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++... ..++-.. +-...+.+.|+..++...
T Consensus 469 v~~~~--d~~~n~~-i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 469 VITCN--EPEDTMK-IVELCQQHFPHLHILARA 498 (601)
T ss_pred EEEeC--CHHHHHH-HHHHHHHHCCCCeEEEEe
Confidence 76332 1111122 223344466777776543
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=84.79 E-value=11 Score=27.16 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=32.5
Q ss_pred CCeEEEecCCCChhHHHHHH----HhCCCceEEEEeCChhHHHHHHhhhhhh
Q 025144 70 GDNVLDVCCGSGDLSFLLSE----QVGSQGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~----~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
..++||+-+|.|.-...+-+ .+..+.++..+.+.....+...+.++..
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC
Confidence 34899999999976554433 3345679999999999888888877643
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=84.69 E-value=16 Score=30.45 Aligned_cols=46 Identities=24% Similarity=0.446 Sum_probs=36.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
....++.+||-.|+|. |..+..+++.. +.+++++|.+++-++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 4567788999999975 77778888875 5689999999988877754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.58 E-value=18 Score=28.64 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHH------HHhhhhhhhhccCCCeeEEEccCCCCC--
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSM------ASSRQDLVSKACYKNIEWVEGDALDLP-- 136 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~------a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 136 (257)
+.....+||.+|=|.=.++..++...+ ....+++..++..--+. ++.++..... +...-+...|+..+.
T Consensus 53 ~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~--lG~~I~h~Vdv~sl~~~ 130 (282)
T KOG4174|consen 53 PYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKR--LGGTILHGVDVTSLKFH 130 (282)
T ss_pred eccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHH--cCCceEecccceeEEec
Confidence 334567999999999889999998875 23356666554443222 2222222211 123445556666543
Q ss_pred --CCCCcccEEEecccccCc----c-c----------HHHHHHHHHhccc-CCCEEEEE
Q 025144 137 --FSDCFFDAITMGYGLRNV----V-D----------KRKALEESFRVLK-PGSRISVL 177 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~----~-~----------~~~~l~~~~~~Lk-~gG~l~~~ 177 (257)
+..+.||-|+.++.-.-. + + ...+|+.+...|+ ..|.+.+.
T Consensus 131 ~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 131 ADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred ccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 345789999987543322 0 1 2345788888998 78888665
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.44 E-value=3.7 Score=33.29 Aligned_cols=97 Identities=18% Similarity=0.068 Sum_probs=52.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----c-----------cCCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A-----------CYKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~-----------~~~~~~~~~~d~~~ 134 (257)
.+|.=||+|. |......+.. .+.+|+++|.+++.++.++++...... . ...++. ...|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH
Confidence 3688888885 3333222222 367999999999988888765422110 0 001222 1223222
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
. -...|+|+..-. ...+-...+++++.+.++++..+
T Consensus 81 a---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 81 A---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred H---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 1 134688886432 22222456677888877766544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=19 Score=29.90 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=48.8
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C---------C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F---------S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~---------~ 138 (257)
+.+||=.|+ +|.+...+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.. . .
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456777775 455555554443 236789999988877766655554322 46788899987742 0 1
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
-+..|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2468999876554
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.13 E-value=0.98 Score=34.65 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
+-...+..+...++.+.+|+--|.|..+..+++. .+..+++++|.+|-+.+.|+....+.-. +.+.-..+.+..+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~---~~l~a~Lg~Fs~~~ 106 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMH---PTLKAVLGNFSYIK 106 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcc---hhHHHHHhhhHHHH
Confidence 3344566667778899999999999999999988 5788999999999887777654422110 1222222333222
Q ss_pred ------CCCCCcccEEEecccccCc--ccHHHHH
Q 025144 136 ------PFSDCFFDAITMGYGLRNV--VDKRKAL 161 (257)
Q Consensus 136 ------~~~~~~~D~v~~~~~l~~~--~~~~~~l 161 (257)
...++++|-|++......+ +++++-+
T Consensus 107 ~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGF 140 (303)
T KOG2782|consen 107 SLIADTGLLDVGVDGILMDLGCSSMQVDNPERGF 140 (303)
T ss_pred HHHHHhCCCcCCcceEEeecCccccccCCccccc
Confidence 2456889999987666554 3455444
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=84.10 E-value=3.5 Score=32.92 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHH
Q 025144 84 SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 163 (257)
Q Consensus 84 ~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~ 163 (257)
+..|.+. ++..+|+++|.++..++.+.+.- -+.-...+.+.. ..+|+|+..-.+. ....++++
T Consensus 2 A~aL~~~-g~~~~v~g~d~~~~~~~~a~~~g---------~~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~ 64 (258)
T PF02153_consen 2 ALALRKA-GPDVEVYGYDRDPETLEAALELG---------IIDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEE 64 (258)
T ss_dssp HHHHHHT-TTTSEEEEE-SSHHHHHHHHHTT---------SSSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHH
T ss_pred hHHHHhC-CCCeEEEEEeCCHHHHHHHHHCC---------CeeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHH
Confidence 3455555 56789999999999988886541 112222221111 2369999765433 45778888
Q ss_pred HHhcccCCCEEEEEeecCCCchhHHHHHHHHH
Q 025144 164 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI 195 (257)
Q Consensus 164 ~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~ 195 (257)
+...+++|+.+ +|...........+.....
T Consensus 65 ~~~~~~~~~iv--~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 65 IAPYLKPGAIV--TDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp HHCGS-TTSEE--EE--S-CHHHHHHHHHHHT
T ss_pred hhhhcCCCcEE--EEeCCCCHHHHHHHHHhcC
Confidence 88888887654 4444444444444444333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.96 E-value=9 Score=29.65 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----------CC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----------PF 137 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----------~~ 137 (257)
...||-.||..|.....+++.+. .+..|++.--+-+-+...... .++.....|+.+. .+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---------~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---------FGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---------hCCeeEEeccCChHHHHHHHHHHhhC
Confidence 45899999999999988887763 356787776555444444322 3567777777653 24
Q ss_pred CCCcccEEEeccc
Q 025144 138 SDCFFDAITMGYG 150 (257)
Q Consensus 138 ~~~~~D~v~~~~~ 150 (257)
++++.|+.+.+..
T Consensus 78 ~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 78 PDGKLDLLYNNAG 90 (289)
T ss_pred CCCceEEEEcCCC
Confidence 6789999986543
|
|
| >PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=83.95 E-value=2.4 Score=30.85 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=30.5
Q ss_pred HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCc
Q 025144 158 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF 237 (257)
Q Consensus 158 ~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 237 (257)
..+++-+++.|.|||.+++. ...+. ........ +. ......+-..|.++||
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe-Y~~D~----eT~~~L~~----------------------G~--pp~~TrLG~~Ll~~GF 116 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE-YVEDR----ETRRQLQR----------------------GV--PPAETRLGFSLLKAGF 116 (170)
T ss_dssp HHHHHHHHTT----SEEEEE--TT-H----HHHHHHHT----------------------T----GGGSHHHHHHHTTT-
T ss_pred HHHHHHHHHHhhhcCeEEEE-EecCH----HHHHHHHc----------------------CC--CcccchhHHHHHhCCc
Confidence 56788899999999999654 22211 11111111 00 0122355678899999
Q ss_pred eeeEEeeecCc
Q 025144 238 SRAKHYELSGG 248 (257)
Q Consensus 238 ~~~~~~~~~~g 248 (257)
+..+-+.++.|
T Consensus 117 twfKdWYfPEG 127 (170)
T PF06557_consen 117 TWFKDWYFPEG 127 (170)
T ss_dssp -EEEEEE--TT
T ss_pred EEEeeeeccCc
Confidence 99998888655
|
; PDB: 2ARH_C. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=83.94 E-value=26 Score=29.91 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=61.1
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cCCC-C-C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L-P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-~ 136 (257)
....++.+||=.|+|. |..+..+++.. +.+ +..+|.+++-++.+++. + ...+.. +..+ + .
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~----G------a~~v~~~~~~~~~~~v~~ 248 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSF----G------CETVDLSKDATLPEQIEQ 248 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHc----C------CeEEecCCcccHHHHHHH
Confidence 4566778888888864 66777777775 343 66678887777776653 1 111111 1100 0 0
Q ss_pred -CCCCcccEEEecccccC--------cccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 -FSDCFFDAITMGYGLRN--------VVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~--------~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+++-.-.-.. ..+....+....+.+++||.+++.-..
T Consensus 249 ~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 249 ILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 12245898884322110 012235788889999999999886653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=18 Score=28.13 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=57.7
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCCh-hHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK-NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 138 (257)
+.++|-.|+ +|.++..+++.+ ..+.+|++++.+. ...+.....++..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467888875 455555555543 2466888887654 23333333332211 46778889988742 00
Q ss_pred -CCcccEEEecccccCc-------------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 139 -DCFFDAITMGYGLRNV-------------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.+..|+++.+...... .....+++.+.+.++.+|.++++
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 1357888765432211 01345677777776666776654
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.43 E-value=20 Score=30.11 Aligned_cols=98 Identities=14% Similarity=0.228 Sum_probs=59.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC--CC-----
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL--DL----- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~----- 135 (257)
....++.+||=.|+|. |..+..+++.. +. .++++|.+++-++.+++. + --.++...-. +.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~l----G-----a~~~i~~~~~~~~~~~~v~ 250 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKKF----G-----ATDCVNPKDHDKPIQQVLV 250 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc----C-----CCEEEcccccchHHHHHHH
Confidence 4567788999998763 66677777774 55 699999999887777542 1 1111211100 00
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+|+-.-. -...+....+.++++ |.++....
T Consensus 251 ~~~~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 251 EMTDGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HHhCCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 011236898874221 134566777888887 98877654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=83.42 E-value=3.9 Score=35.44 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=47.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
..+|+=+|+ |..+..+++.+. .+.+++++|.+++.++..++.. .++.++.+|..+.. ..-+.+|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 467888877 556555555542 2568999999999887776653 46778899987642 22356888
Q ss_pred EEec
Q 025144 145 ITMG 148 (257)
Q Consensus 145 v~~~ 148 (257)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 8763
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.38 E-value=12 Score=31.52 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=60.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCC----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL---- 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~---- 135 (257)
..+..++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++. + -..++..+- .++
T Consensus 182 ~~~~~~g~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~v 250 (369)
T cd08301 182 VAKVKKGSTVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKKF----G-----VTEFVNPKDHDKPVQEVI 250 (369)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEEcccccchhHHHHH
Confidence 34567888999998763 56667777774 45 799999998887777542 1 111221111 000
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEeec
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 180 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~~ 180 (257)
....+.+|+++-.-. ....+....+.++++ |.+++....
T Consensus 251 ~~~~~~~~d~vid~~G------~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 251 AEMTGGGVDYSFECTG------NIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred HHHhCCCCCEEEECCC------ChHHHHHHHHHhhcCCCEEEEECcC
Confidence 011235888874221 134566677888996 988776543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=83.25 E-value=25 Score=29.27 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=55.6
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--------C-
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--------P- 136 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--------~- 136 (257)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++-.+.+++. + --.++..+.... .
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREF----G-----ADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CCeEEcCcccccHHHHHHHHHH
Confidence 4677888888753 56667777774 55 899999887766655422 1 011111111100 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-... ....+....+.++++|.++...
T Consensus 245 ~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 245 TGGRGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred hCCCCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 12346899884321 1245667788999999997654
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.87 E-value=12 Score=30.24 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=52.0
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc--------------CCCeeEEEccCCCC
Q 025144 72 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALDL 135 (257)
Q Consensus 72 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~d~~~~ 135 (257)
+|.=||+|. |. .+..+++ .+.+|+++|.+++.++.+.++........ ..++. ...+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh
Confidence 577788874 33 2333332 36789999999999988776532210000 01122 12222221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
-...|+|+..-. ....-...++.++.+.++++..+.+
T Consensus 79 ---~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 ---VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 134788885432 2222234567778888888765533
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.84 E-value=13 Score=28.92 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC-----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS----- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 138 (257)
+.++|=.| |+|..+..+++.+ ..+.++.+++.+++.++...+.+...+ .++.++..|+.+.. +.
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56778666 4566666665544 235689999888776665554443221 46888999998642 10
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
.+..|+++.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468998865543
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=15 Score=32.15 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-----------
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS----------- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 138 (257)
.-+++|+-||.|.+..-+-.. + ...+.++|+++.+.+.-+.+.... +....+..|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~-----p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCD-----PATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCC-----CccceeccChhhCccccccccchhhhh
Confidence 449999999999999888654 2 346788999988777666654211 2334445566554310
Q ss_pred ------CCcccEEEecccccCc
Q 025144 139 ------DCFFDAITMGYGLRNV 154 (257)
Q Consensus 139 ------~~~~D~v~~~~~l~~~ 154 (257)
....|+++.......+
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCcc
Confidence 1257998876655544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=82.46 E-value=3.8 Score=29.43 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=50.4
Q ss_pred EEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccEEEeccc
Q 025144 73 VLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 73 vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~~~ 150 (257)
|+=+|+|. |.+....+.. .+.+|+.++-++ .++..++.--...... .+..+... .........+.+|+|+..--
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEec
Confidence 34566663 4444444433 467999999877 5554333210000000 01111111 11111113467999987432
Q ss_pred ccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 151 LRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 151 l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+....+..+.+.+.++..+++.
T Consensus 77 ---a~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 77 ---AYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp ---GGGHHHHHHHHCTGEETTEEEEEE
T ss_pred ---ccchHHHHHHHhhccCCCcEEEEE
Confidence 224677889999999999777554
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.36 E-value=5.4 Score=33.08 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=54.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEEe
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~ 147 (257)
.+++|+-||.|.+..-+... + ..-+.++|+++..++.-+.+. +...+...|+.... ++...+|+++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEe
Confidence 47999999999999777655 2 346888999999888877775 33566667776543 11116899998
Q ss_pred cccccCc
Q 025144 148 GYGLRNV 154 (257)
Q Consensus 148 ~~~l~~~ 154 (257)
....+.+
T Consensus 74 GpPCQ~F 80 (328)
T COG0270 74 GPPCQDF 80 (328)
T ss_pred CCCCcch
Confidence 7776665
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.33 E-value=18 Score=33.39 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 137 (257)
++++||-.|+ +|.++..+++.+ ..+.+|+++|.+++.++.+.+.+... .++.++..|+.+.. +
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3567887775 444544444433 23578999999987766655443211 36788888887642 1
Q ss_pred CCCcccEEEecccccCccc-------------------HHHHHHHHHhcccC---CCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKP---GSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lk~---gG~l~~~~ 178 (257)
..+..|+|+.+........ ...+++.+.+.+++ +|.+++..
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1246899987665322110 23445666666665 57776654
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=17 Score=28.69 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=46.4
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC------C
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS------D 139 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~------~ 139 (257)
++|-.|++ |.++..+++.+ ..+.+|..++.+++.++....... + .++.++++|+.+.. +. .
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A----GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56777754 55555554433 236789999988876666544432 1 46888999998742 00 3
Q ss_pred CcccEEEecccc
Q 025144 140 CFFDAITMGYGL 151 (257)
Q Consensus 140 ~~~D~v~~~~~l 151 (257)
++.|+++.+...
T Consensus 76 ~~id~vi~~ag~ 87 (260)
T PRK08267 76 GRLDVLFNNAGI 87 (260)
T ss_pred CCCCEEEECCCC
Confidence 568999876654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=25 Score=30.06 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=26.2
Q ss_pred eEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 72 NVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 72 ~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
+|-=+|.| .|..+..+.. .+.+|+++|.+++.++.+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcC
Confidence 35556666 3444443333 257999999999999888764
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.69 E-value=8.7 Score=30.99 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=46.1
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|.=||+|. | .++..|.+. +.+|+++|.+++.++.+.+.- .+.....+... -...|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~g---------~~~~~~~~~~~----~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIERG---------LVDEASTDLSL----LKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHCC---------CcccccCCHhH----hcCCCEEEEcC
Confidence 466677764 3 344444433 568999999998877765431 11111111111 13579998755
Q ss_pred cccCcccHHHHHHHHHhcccCCC
Q 025144 150 GLRNVVDKRKALEESFRVLKPGS 172 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG 172 (257)
... .....++++...++++.
T Consensus 66 p~~---~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 66 PIG---LLLPPSEQLIPALPPEA 85 (279)
T ss_pred CHH---HHHHHHHHHHHhCCCCc
Confidence 432 23456777777777663
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.48 E-value=3.8 Score=34.39 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=56.6
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+...++.+|+|..|-.|.-+.+++..+.+..++.++|.++.-.+..++.+...+. ..+....+|+...
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~---~~~~~~~~df~~t 276 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV---SIVESVEGDFLNT 276 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC---CccccccccccCC
Confidence 3455667789999999999999999998877788999999999888888877765443 3566668888764
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=29 Score=28.45 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=53.5
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhh--hhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 72 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 72 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
+|+=+|+|. |. ++..|. + .+.+|+.++-+++.++..++. +.-... ............ +.+.+.+|+|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~-~--~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~---g~~~~~~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLA-R--AGLPVRLILRDRQRLAAYQQAGGLTLVEQ---GQASLYAIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHH-h--CCCCeEEEEechHHHHHHhhcCCeEEeeC---CcceeeccCCCC-cccccccCEEEE
Confidence 688899885 54 444444 3 256899999887666655432 110000 111111111111 112357999886
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.-=- .+....++.+...+.++..++..
T Consensus 77 ~vK~---~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 77 ACKA---YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred ECCH---HhHHHHHHHHHhhCCCCCEEEEE
Confidence 4322 24567788899999998876554
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=81.07 E-value=17 Score=31.26 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..+.+|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+. +..+. . ...|+|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~----------G~~v~--~leea-l--~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD----------GFRVM--TMEEA-A--KIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc----------CCEeC--CHHHH-H--hcCCEEE
Confidence 4678999999996 66666666654 67899999888543333221 11221 11121 1 2468887
Q ss_pred ecccccCcccHHHHHH-HHHhcccCCCEEEEEeec
Q 025144 147 MGYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~-~~~~~Lk~gG~l~~~~~~ 180 (257)
..- .....+. .....+|+|++++.....
T Consensus 256 taT------G~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TAT------GNKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECC------CCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 632 1234444 477788999988766543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=17 Score=28.66 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=46.2
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----CC
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----SD 139 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 139 (257)
.+||-.| |+|..+..+++.+ ..+.+|++++.++...+...+.+...+ .++.++..|+.+.. + .-
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567666 4555666555433 235799999988766555544443322 46788889987742 0 01
Q ss_pred CcccEEEecccc
Q 025144 140 CFFDAITMGYGL 151 (257)
Q Consensus 140 ~~~D~v~~~~~l 151 (257)
+..|.|+.+...
T Consensus 77 ~~id~vi~~ag~ 88 (263)
T PRK06181 77 GGIDILVNNAGI 88 (263)
T ss_pred CCCCEEEECCCc
Confidence 358999876543
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.65 E-value=31 Score=28.58 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=59.5
Q ss_pred hhCCCCCCeEEEecCC-CChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C
Q 025144 64 WSGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 136 (257)
.....++.+||=.|+| .|..+..+++.. +. .+++++.+++..+.+++. +. . .++...-.++ .
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~----ga----~-~~i~~~~~~~~~~l~~ 235 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEEL----GA----T-IVLDPTEVDVVAEVRK 235 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----CC----C-EEECCCccCHHHHHHH
Confidence 3456678888888865 356666777764 55 789999888877766442 10 1 1111110110 0
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...+.+|+|+-... ....+..+.+.|+++|.++....
T Consensus 236 ~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 236 LTGGGGVDVSFDCAG------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HhCCCCCCEEEECCC------CHHHHHHHHHhccCCCEEEEEcc
Confidence 12234899985322 13457788889999999877654
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.57 E-value=18 Score=29.30 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=52.6
Q ss_pred CeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hcc----------CCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KAC----------YKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~----------~~~~~~~~~d~~~ 134 (257)
.+|.=||+|. |. ++..++. .+.+|+..|.+++.++.+.+++.... ... ..++.. ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL---AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH
Confidence 4788888885 33 3333332 36799999999998887654332110 000 011222 223222
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
-...|+|+..- .....-...+++.+...++++..++
T Consensus 81 ----~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 ----LADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred ----hcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 13478887632 1111123466788888888887654
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=80.35 E-value=34 Score=29.28 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=60.3
Q ss_pred hCCCCCCeEEEec-CC-CChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCC-----
Q 025144 65 SGAKTGDNVLDVC-CG-SGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDL----- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~----- 135 (257)
....++.+||=+| +| .|..+..+++..+.+ .+++++|.+++-++.+++..........-...++...- .++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence 3556778999887 34 577888888774322 27999999999888887642110000000111221110 111
Q ss_pred C-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
. .....+|+|+..-. ....+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 0 12235898875321 135667788889988876543
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.34 E-value=31 Score=28.24 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=58.1
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
...+..++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ + + --.++..+ .. +.+.
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~-~---g-----~~~~~~~~--~~--~~~~ 225 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARE-L---G-----ADWAGDSD--DL--PPEP 225 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHH-h---C-----CcEEeccC--cc--CCCc
Confidence 345567778888887763 45556666663 5789999888876666532 2 1 00111111 11 2345
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+++.... ....+..+.+.|+++|.++...
T Consensus 226 vD~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 226 LDAAIIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ccEEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 888774321 1246788899999999998654
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.18 E-value=23 Score=29.67 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 145 (257)
.++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+.+.+ +. . .++. .+...+......+|++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~~~---Ga----~-~~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALEHL---GA----D-DYLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhc---CC----c-EEecCCChHHHHHhcCCCcEE
Confidence 5677888887753 66777777774 567888887776555444332 11 1 1111 1100110001247888
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+-.-. ....+....+.++++|.++....
T Consensus 249 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 249 IDTVP------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EECCC------chHHHHHHHHHhccCCEEEEECC
Confidence 74221 12456777888999999877654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=80.07 E-value=22 Score=32.43 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=45.4
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+|+|. |......++. .+.+++.+|.+++.++.+++ ....++.+|..+.. ..-++.|++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----------~g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----------cCCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 5788888774 4444333333 35689999999998888764 25678999998753 223468888
Q ss_pred Eec
Q 025144 146 TMG 148 (257)
Q Consensus 146 ~~~ 148 (257)
++.
T Consensus 469 vv~ 471 (621)
T PRK03562 469 INA 471 (621)
T ss_pred EEE
Confidence 763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 257 | ||||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 1e-12 | ||
| 3dh0_A | 219 | Crystal Structure Of A Sam Dependent Methyltransfer | 1e-10 | ||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 3e-09 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 5e-08 | ||
| 3sm3_A | 235 | Crystal Structure Of Sam-Dependent Methyltransferas | 4e-07 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 6e-07 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 7e-07 | ||
| 3bkx_A | 275 | Crystal Structure Of Cyclopropane-fatty-acyl-phosph | 9e-06 | ||
| 4fr0_A | 383 | Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransf | 8e-05 | ||
| 2avn_A | 260 | Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYN | 9e-05 | ||
| 3lhd_C | 253 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 2e-04 | ||
| 3mb5_A | 255 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 2e-04 | ||
| 2b25_A | 336 | Human Putative Trna(1-Methyladenosine)methyltransfe | 3e-04 | ||
| 3eey_A | 197 | Crystal Structure Of Putative Rrna-Methylase From C | 4e-04 |
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219 | Back alignment and structure |
|
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid Synthase- Like Protein (yp_807781.1) From Lactobacillus Casei Atcc 334 At 1.85 A Resolution Length = 275 | Back alignment and structure |
|
| >pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase With Sam Length = 383 | Back alignment and structure |
|
| >pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS Methyltransferase-Related Protein (Tm1389) From Thermotoga Maritima Msb8 At 2.35 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Homocysteine Length = 253 | Back alignment and structure |
|
| >pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Methionine Length = 255 | Back alignment and structure |
|
| >pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase Length = 336 | Back alignment and structure |
|
| >pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum Length = 197 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 7e-63
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 14/208 (6%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
D+ + L F ++ K + K G VLDV G+G LS+ VG +
Sbjct: 8 DPSKIKKLDDPSRLELFDPEKVLKEFGL-----KEGMTVLDVGTGAGFYLPYLSKMVGEK 62
Query: 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154
GKV +D + ++ A + V+K KN+E ++ + +P D D I M + +
Sbjct: 63 GKVYAIDVQEEMVNYAWEK---VNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHEL 119
Query: 155 VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL-----A 209
+ K LEE RV KP + ++++D+ K + +E + V + G+
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179
Query: 210 EEYQYLKSSIREFLTGKDLEKLALEIGF 237
E +Y + ++ L + + F
Sbjct: 180 EVGKYCFGVYAMIVKQEEENPL-MNVPF 206
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 3e-59
Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 17/222 (7%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLL 87
S +++ + A D ++ L + I ++ G G +D+ G G LS L
Sbjct: 3 SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIAL 61
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147
++Q + LDFSK+ +A +++ I+ V+GD ++P D + D I
Sbjct: 62 AKQSD--FSIRALDFSKHMNEIA--LKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVS 117
Query: 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207
+ D A E +R+LK G + + + +I MI
Sbjct: 118 RGSVFFWEDVATAFREIYRILKSGGKTYIGGGF-GNKELRDSISAEMIR----------- 165
Query: 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 249
+++ + + + EIG S + G
Sbjct: 166 KNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGF 207
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-51
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 12/180 (6%)
Query: 49 LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108
++ H + + + + VLD+ G+G + S V + IG+D +K +
Sbjct: 1 MAHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVE 57
Query: 109 MASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVL 168
+ASS + +N+ + +G A LPF D FD IT Y + D RKA+ E RVL
Sbjct: 58 VASSFAQ---EKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVL 114
Query: 169 KPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY------GLAEEYQYLKSSIREF 222
K R ++D P + + Q I+++
Sbjct: 115 KQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 174
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-50
Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 33/221 (14%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMA--VSWSGAKTGDNVLDVCCGSGDLSFLLSE 89
++ +Y ++ H +A + + K + VLDV G G ++ +
Sbjct: 4 DKIHHHHHHMY------VTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAP 57
Query: 90 QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149
V KV+ D +++ L +A + + ++ +E+V+GDA +PF+D F +T
Sbjct: 58 FVK---KVVAFDLTEDILKVARAF---IEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI 111
Query: 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGL 208
+ + + E++RVLK G ++ ++D + F +
Sbjct: 112 AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKE------------ 159
Query: 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 249
S D K+ E GF + +
Sbjct: 160 ------RDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTF 194
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-49
Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)
Query: 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLS 88
SE + F ++ YD + S ++LD+ G+G LS L
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLM 63
Query: 89 EQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148
E+ + +D S+ L +A +R ++++E D F + +D +
Sbjct: 64 EKYP-EATFTLVDMSEKMLEIAKNR-----FRGNLKVKYIEADYSKYDFEEK-YDMVVSA 116
Query: 149 YGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 206
+ ++ DK++ + S+ +LK D F + + + V SG
Sbjct: 117 LSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYV--ENSGL 174
Query: 207 GLAE-EYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241
E Y +S + + + E GF
Sbjct: 175 TEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVS 210
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-49
Identities = 40/202 (19%), Positives = 78/202 (38%), Gaps = 11/202 (5%)
Query: 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113
+ ++ + D +LD+ CGSG +S L+ + V G+D + + +A +
Sbjct: 17 SLDLYPIIHNY--LQEDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETA 71
Query: 114 --QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKALEESFRVL 168
+++ E+ +A L F D FD M L +V D + + ++E FRVL
Sbjct: 72 ARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVL 131
Query: 169 KPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 228
KPG+ + +++F ++ ++ D + + + I T K+L
Sbjct: 132 KPGAYLYLVEFGQNWHLKLYRK-RYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKEL 190
Query: 229 EKLALEIGFSRAKHYELSGGLM 250
L + F
Sbjct: 191 VFLLTDCRFEIDYFRVKELETR 212
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-49
Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 24/218 (11%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
+ F+ +A Y+ + A+ G+++L+V G+G L
Sbjct: 1 DPFASLAEAYEAWYGTPLGAYVIAEEERALKG-LLPPGESLLEVGAGTGYWLRRLPY--- 56
Query: 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152
+ +G++ S+ L++ R WV LPF FD + + L
Sbjct: 57 --PQKVGVEPSEAMLAVGRRR--------APEATWVRAWGEALPFPGESFDVVLLFTTLE 106
Query: 153 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE-- 210
V D + L E+ RVL+PG + V + + + A +
Sbjct: 107 FVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLK 166
Query: 211 --------EYQYLKSSIREFLTGKDLEKLALEIGFSRA 240
E + + + ++ + G A
Sbjct: 167 ALLGPPEAEGEAVFLAPEAHPPYEEADLAGRRAGNRPA 204
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 4e-48
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 24/200 (12%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQ-HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQ 90
E + RIA YD++ + + HR+ + K VLD+ G+G S L E+
Sbjct: 18 WEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSLFLQER 75
Query: 91 VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA-ITMGY 149
+V+ +D SK L +A + VE A DLPF F+A + +G
Sbjct: 76 GF---EVVLVDPSKEMLEVAREK---------GVKNVVEAKAEDLPFPSGAFEAVLALGD 123
Query: 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW-------MIDNVVVPV 202
L V +K KA E RVL P + + + I++ + V
Sbjct: 124 VLSYVENKDKAFSEIRRVLVPDGLL-IATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSV 182
Query: 203 ASGYGLAEEYQYLKSSIREF 222
+ Y + +
Sbjct: 183 GTTLFSFNSYAFKPEDLDSL 202
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-45
Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 30/217 (13%)
Query: 42 YDNLNDLLSFGQHRIWKRM----------AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
D + DL++ G + + K G+ +L++ CG GDLS +L++QV
Sbjct: 6 LDYITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQV 65
Query: 92 GSQGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEGDALD---LPFSDCFFDA 144
GS G V G+D + L++ + L++ + L P +D FD
Sbjct: 66 GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDR 125
Query: 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204
+ + + L + + V +++ + + +
Sbjct: 126 VVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQ----------IGHLQA 175
Query: 205 GYGLAEEYQYLKSS---IREFLTGKDLEKLALEIGFS 238
Y S IR +T L ++A + ++
Sbjct: 176 AMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWT 212
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-45
Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 15/198 (7%)
Query: 42 YDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
Y L Q +++ + G VL+ CG G + +L++ ++ +D
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSID 68
Query: 102 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKAL 161
S L A K KN+++++ + LPF D FD I + + L ++ +AL
Sbjct: 69 ISPESLEKAREN---TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEAL 125
Query: 162 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221
+ +VLKPG I+V++ + + F ++ + +
Sbjct: 126 KSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI-----------EAWNCLIRVQAYMKGN 174
Query: 222 FLTGKDLEKLALEIGFSR 239
L G+ + L E GF +
Sbjct: 175 SLVGRQIYPLLQESGFEK 192
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 3e-43
Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 44/237 (18%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSW------SGAKTGDNVLDVCCGSGDLSF 85
+D+ + + +W + S K VLDV CG G ++
Sbjct: 10 FNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTY 69
Query: 86 LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145
LS K +G+D S+ + R ++ +++GD LPF + F+AI
Sbjct: 70 KLSRTGY---KAVGVDISEVMIQKGKER------GEGPDLSFIKGDLSSLPFENEQFEAI 120
Query: 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205
L + +AL E RVLK + + +P +
Sbjct: 121 MAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRL------------ 168
Query: 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFS---------RAKHYELSGGLMGNL 253
Y K + + + E+L E GF R + ++ G L +L
Sbjct: 169 --------YGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDL 217
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-42
Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 19/205 (9%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
R A YD L +I MA + L++ G+G ++ L +
Sbjct: 3 SALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY 62
Query: 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152
I LD L + + + ++ V+ DA +P D + + +
Sbjct: 63 R---YIALDADAAMLEVFRQKI----AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115
Query: 153 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEY 212
V D K L E+ RVLKPG + P T + W A E
Sbjct: 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERW------------RAFAAEE 163
Query: 213 QYLKSSIREFLTGKDLEKLALEIGF 237
+ K++E+ +G
Sbjct: 164 GFPVERGLHAKRLKEVEEALRRLGL 188
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 8e-39
Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 39/215 (18%)
Query: 30 ERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSE 89
+F R Y+ + + + +++ G+G + L
Sbjct: 12 HMWHIFERFVNEYERWFLV----HRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL-- 65
Query: 90 QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149
IG++ S+ +A R + ++G A +LP D FD M
Sbjct: 66 -----KIKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVT 110
Query: 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 209
+ V D +AL+E++R+LK G + V ++ + +
Sbjct: 111 TICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKE--------------- 155
Query: 210 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244
+ + F + ++L L + GF K +
Sbjct: 156 ---KSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 137 bits (345), Expect = 2e-38
Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 31/210 (14%)
Query: 41 VYDNLNDLLSFGQHRIWKR-MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIG 99
L D+ + + + G+ G VLD+ CG+G +L S+ VG GKVIG
Sbjct: 54 HRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIG 113
Query: 100 LDFSKNQLSMASSRQD-----LVSKACYKNIEWVEGDALDL------PFSDCFFDAITMG 148
+D NQL +A + N+ +++G +L D D +
Sbjct: 114 VDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISN 173
Query: 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208
+K +E RVL+ G + D + + + A Q+
Sbjct: 174 CVCNLSTNKLALFKEIHRVLRDGGELYFSDVY-ADRRLSEAAQQD--------------- 217
Query: 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFS 238
Y + L +D +L E GF
Sbjct: 218 PILYG---ECLGGALYLEDFRRLVAEAGFR 244
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 7e-36
Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 16/193 (8%)
Query: 46 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105
+D +SF + +WK +++D CG G L +L + K G+D +
Sbjct: 7 DDYVSFLVNTVWK--------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 58
Query: 106 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 165
L+ A + + E++EGDA ++ +D +D L ++ L++
Sbjct: 59 LLAEAREL----FRLLPYDSEFLEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMI 113
Query: 166 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225
+K G +I + + + + + + + Q ++ G
Sbjct: 114 HSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG---KDGNIG 170
Query: 226 KDLEKLALEIGFS 238
+ E+G
Sbjct: 171 MKIPIYLSELGVK 183
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 5e-35
Identities = 40/215 (18%), Positives = 68/215 (31%), Gaps = 26/215 (12%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA--VSWSGAKTGDNVLDVCCGSGDLSF 85
+E LF A YD+ ++ + K+ NVL+ G+G+L+
Sbjct: 2 GTEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTN 61
Query: 86 LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145
L V G++ S+ +A + K EGD L D I
Sbjct: 62 KLLLAG---RTVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVPTS-IDTI 110
Query: 146 TMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203
Y ++ D K A+ + ++L G +I D + Q E +
Sbjct: 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL- 169
Query: 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFS 238
L EY + ++ + GF
Sbjct: 170 -ANDLQTEY---------YTRIPVMQTIFENNGFH 194
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-34
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 19/170 (11%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
+ ++D CG+G L E K+ +D + L
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVK--------- 56
Query: 121 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180
+ + V + D D I ++ DK+ + E R+LK R+ ++D+
Sbjct: 57 --EKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR 114
Query: 181 KSTQPFTTAIQEWMIDNVVVPVASGYGLAEE-----YQYLKSSIREFLTG 225
K + M + + S + + + Y + R+ G
Sbjct: 115 KENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFGLVLKRKTSEG 164
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 7e-34
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
+ R+ P Y ++N + + + + + K VLD+ CG G SFLL +
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF-- 61
Query: 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154
+V+G+D S++ + A +K+ N+E++ GDA L F D FD + + +
Sbjct: 62 -EVVGVDISEDMIRKAREY----AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116
Query: 155 --VDKRKALEESFRVLKPGSRISVLDFN 180
++ + +E RVLKP + + +
Sbjct: 117 EPLELNQVFKEVRRVLKPSGKFIMYFTD 144
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 7e-34
Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 20/214 (9%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
+++ I Y ++ G + D+ G+G S L+ Q
Sbjct: 3 SIYNSIGKQYSQTR-----VPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL 57
Query: 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152
V ++ S A +EW G A +L D D + +
Sbjct: 58 ---FVYAVEPSIVMRQQAVVHP---------QVEWFTGYAENLALPDKSVDGVISILAIH 105
Query: 153 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQ-PFTTAIQEWMIDNVV--VPVASGYGLA 209
+ K+ +E R+++ G+ + + + Q + ++ ++ + +P+ L
Sbjct: 106 HFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLL 165
Query: 210 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHY 243
+E + FL DL L + R + Y
Sbjct: 166 QENTKRRVEAIPFLLPHDLSDLFAAAAWRRPELY 199
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 5e-29
Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 12/221 (5%)
Query: 41 VYDNLNDLLSF-GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIG 99
Y+ L +L+ +H ++R + G V V CG L +++G
Sbjct: 91 FYERLPAVLATRERHGHFRRALQR--HLRPGCVVASVPCGWMSELLALDYSACPGVQLVG 148
Query: 100 LDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRK 159
+D+ L A + A I DA L + +D +T D +
Sbjct: 149 IDYDPEALDGA--TRLAAGHALAGQITLHRQDAWKLDTREG-YDLLTSNGLNIYEPDDAR 205
Query: 160 ALE---ESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216
E ++ LKPG + P + W + + P + ++
Sbjct: 206 VTELYRRFWQALKPGGALVTSFLTPP--PALSPDSPWDMQA-IDPHDLQLQQLVFTRLIQ 262
Query: 217 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257
T E GF+ + + L ++A +
Sbjct: 263 PRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-28
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 26/195 (13%)
Query: 52 GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111
G + + + D+ CG+G + +L+ V G+V GLDF + +
Sbjct: 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIF- 85
Query: 112 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 171
++ + + G DLPF + D I + N + + L E + LK G
Sbjct: 86 -NRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN-IGFERGLNEWRKYLKKG 143
Query: 172 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 231
++V + + T I ++ +D E T +
Sbjct: 144 GYLAVSECSWFTDERPAEINDFWMDA---------------------YPEIDTIPNQVAK 182
Query: 232 ALEIGFSRAKHYELS 246
+ G+ + L
Sbjct: 183 IHKAGYLPVATFILP 197
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-27
Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 27/212 (12%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
FS I + L G ++ + + D+ CG+G + L++ V
Sbjct: 13 FSFICNYFKLLKRQGP-GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-- 69
Query: 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154
G++ G+D + + + ++ V C ++ + G +LPF + D I + N
Sbjct: 70 GQITGIDLFPDFIEIF--NENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN- 126
Query: 155 VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214
+ + + E + LK G I+V + + T I+++ +D
Sbjct: 127 IGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDA----------------- 169
Query: 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246
E G++ H+ L
Sbjct: 170 ----YPEISVIPTCIDKMERAGYTPTAHFILP 197
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-26
Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 24/211 (11%)
Query: 30 ERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSE 89
+ + A YD +VL++ G+G + LS
Sbjct: 10 SQLSYYRARASEYD---ATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSG 66
Query: 90 QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149
V LD S ++ A N+E+ + D D +DA+ +
Sbjct: 67 LADR---VTALDGSAEMIAEAGRH-------GLDNVEFRQQDLFDWTPDRQ-WDAVFFAH 115
Query: 150 GLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207
L +V D R E + PG + +D +++ V V
Sbjct: 116 WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT----DHERRLEQQDDSEPEVAVRRTLQ 171
Query: 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFS 238
++ +K F + +L + +G+S
Sbjct: 172 DGRSFRIVK----VFRSPAELTERLTALGWS 198
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-26
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 13/181 (7%)
Query: 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116
R + + VLD G + + G K G++ S QL A +
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENF--- 65
Query: 117 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRI 174
S+ + +GD LPF D + + ++ D ++A++E RVLKPG
Sbjct: 66 -SRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLA 124
Query: 175 SVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE 234
+ + + E + + + + G + Y ++ KD++ L E
Sbjct: 125 CINFLTTKDERYNKG--EKIGEGEFLQLERGEKVIHSY-VSLEEADKYF--KDMKVLFKE 179
Query: 235 I 235
Sbjct: 180 D 180
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 3e-25
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 19/146 (13%)
Query: 44 NLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103
+ + L H K K GD V+D CG+G+ + L+ VG G+V G D
Sbjct: 4 TIKNSLGQ-SHDYIKMFV------KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQ 56
Query: 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAITMGYGLRNVVDKR---- 158
++ + + L + ++ + + DC A+ G D
Sbjct: 57 DKAIANTTKK--LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTR 114
Query: 159 -----KALEESFRVLKPGSRISVLDF 179
+AL ++ +L G I+V+ +
Sbjct: 115 PETTIQALSKAMELLVTGGIITVVIY 140
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 1e-24
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
+ F + + + + L + G+ K+M VLD+ CG G +E
Sbjct: 11 KHFFEQYSQMPRSKEGLKAAGEWHELKKML----PDFNQKTVLDLGCGFGWHCIYAAEHG 66
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
+ V+G+D S+ L+ A + + + + D+ ++ + L
Sbjct: 67 AKK--VLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEPDAYNVVLSSLAL 118
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI--QEWMID 196
+ ++ + LK + P TA Q+W D
Sbjct: 119 HYIASFDDICKKVYINLKSSGSFIFSVEH----PVFTADGRQDWYTD 161
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-24
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 37 RIAPVYDNLNDLLSFG----------------------QHRIWKRMAVSWSGAKTGDNVL 74
+ +YD+ D + R+ M + ++GD VL
Sbjct: 8 EVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMI-ALLDVRSGDRVL 66
Query: 75 DVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN-IEWVEGDAL 133
DV CG G + L+ +V G+ S+ Q++ A + A N + + DA+
Sbjct: 67 DVGCGIGKPAVRLATARD--VRVTGISISRPQVNQA---NARATAAGLANRVTFSYADAM 121
Query: 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193
DLPF D FDA+ L ++ D+ +AL E RVL+PG +++ DF P A +E
Sbjct: 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV-LLAPVEGAKKEA 180
Query: 194 M 194
+
Sbjct: 181 V 181
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 8e-24
Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 25/190 (13%)
Query: 43 DNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102
+L + G + + + G +LD CG G + LS+Q G V+G D
Sbjct: 21 QRWRNLAAAGNDIYGEARLIDAMAPR-GAKILDAGCGQGRIGGYLSKQ-GHD--VLGTDL 76
Query: 103 SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV---DKRK 159
+ A + WV GD S+ FD I + + +
Sbjct: 77 DPILIDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREP 128
Query: 160 ALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219
AL R L R V+ F + W+ + + VA GL E + +
Sbjct: 129 ALANIHRALGADGRA-VIGFGAG--------RGWVFGD-FLEVAERVGLELENAFESWDL 178
Query: 220 REFLTGKDLE 229
+ F+ G +
Sbjct: 179 KPFVQGSEFL 188
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 1e-23
Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 39 APVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVI 98
A +Y + + + + + + + G+ +LD+ CG+G L+ +++ V+
Sbjct: 32 ATLYQDKHSF----VWQYGEDL-LQLLNPQPGEFILDLGCGTGQLTEKIAQSGAE---VL 83
Query: 99 GLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR 158
G D + + A Y ++ + DA + DA+ L V +
Sbjct: 84 GTDNAATMIEKARQN--------YPHLHFDVADARNFRVDKPL-DAVFSNAMLHWVKEPE 134
Query: 159 KALEESFRVLKPGSRISVLDF-NKSTQPFTTAIQEWM 194
A+ + LK G R + + A+ +
Sbjct: 135 AAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 7e-23
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Query: 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112
+ +A + LD+ G G + L + G + L+ + Q
Sbjct: 67 DEWLASELA-MTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRN-- 121
Query: 113 RQDLVSKACYKN-IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 171
++ ++A + I G L++P D +D I + DK K +E RVLKP
Sbjct: 122 -EEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR 180
Query: 172 SRISVLDFNKSTQPFTTAIQEWM 194
+++ D K ++IQ +
Sbjct: 181 GVMAITDPMKEDGIDKSSIQPIL 203
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 9e-23
Identities = 30/133 (22%), Positives = 41/133 (30%), Gaps = 14/133 (10%)
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125
G ++D+ CG G E S V+GLD S+ L+ A + I
Sbjct: 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASY--VLGLDLSEKMLARARAAGPD------TGI 91
Query: 126 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
+ D L FD L V D + + L PG + P
Sbjct: 92 TYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH----P 147
Query: 186 FTTA--IQEWMID 196
A W ID
Sbjct: 148 IYMAPARPGWAID 160
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-22
Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 19/174 (10%)
Query: 42 YDNLNDLLS--FGQHRIW------KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
D + FG++ I + +S VLD+ G G ++E+ G+
Sbjct: 20 TDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA 79
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT---MGYG 150
G+D N ++MA+ R +K I + D L F + FD I
Sbjct: 80 H--THGIDICSNIVNMANERVSGNNK-----IIFEANDILTKEFPENNFDLIYSRDAILA 132
Query: 151 LRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204
L ++ +K K ++ ++ LKP + + D+ + + + + + +
Sbjct: 133 L-SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLIT 185
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-22
Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 16/150 (10%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
+ +S + L + R+ + +LDV G+G + L+
Sbjct: 6 SKAYSSPTFDAEALLG--TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL- 62
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G Q + GL+ + + +A + ++ + G DL S + + Y L
Sbjct: 63 GHQ--IEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYSL 112
Query: 152 RNV--VDKRKALEESFRVLKPGSRISVLDF 179
++ + AL ++ G + ++ F
Sbjct: 113 IHMGPGELPDALVALRMAVEDGGGL-LMSF 141
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 9e-22
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 33 ELFSRIAPVYDNL--NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQ 90
EL++ +A YD + + + + VLD+ CG+G + L+E
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE- 61
Query: 91 VGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149
+G +V+GLD + L +A + +K IE+++GD L++ F + FDA+TM +
Sbjct: 62 ---RGYEVVGLDLHEEMLRVARRK----AKERNLKIEFLQGDVLEIAFKNE-FDAVTMFF 113
Query: 150 ---GLRNVVDKRKALEESFRVLKPGSRISVLDFN 180
+ D RK + LKPG + DF
Sbjct: 114 STIMYFDEEDLRKLFSKVAEALKPGGVF-ITDFP 146
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 2e-20
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
++DV CG G + +++++ ++IG D S + A ++ YKN+ +
Sbjct: 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-YKNVSF 93
Query: 128 VEGDALDLPFS------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181
+ D F D IT + D K ++ L+ I++ +
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYAD 152
Query: 182 STQPFTTAIQEWMID 196
P + MI+
Sbjct: 153 PIFPDYPEFDDLMIE 167
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-19
Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
+ + A VYD L + + + W V + G + D+ CG+G + LL++
Sbjct: 4 YEQFAYVYDELMQDVPYPEWVAWVLEQV-----EPGKRIADIGCGTGTATLLLADHY--- 55
Query: 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG---L 151
+V G+D S+ L +A + + +++++ D +L + + L
Sbjct: 56 -EVTGVDLSEEMLEIAQEK----AMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYL 110
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFN 180
+ D ++ + + R+L G ++ + D +
Sbjct: 111 QTEADVKQTFDSAARLLTDGGKL-LFDVH 138
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-18
Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91
Q + A Y D + R + + ++ + N D+ CG G+ + LL+++
Sbjct: 1 QGHMAWSAQQYLKFEDE----RTRPARDL-LAQVPLERVLNGYDLGCGPGNSTELLTDRY 55
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
G + G+D + L A+ R N + + D + D +
Sbjct: 56 G-VNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWKPAQK-ADLLYANAVF 105
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 194
+ V D L + L+ G ++V + +P A+ E
Sbjct: 106 QWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETA 148
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 2e-18
Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 35 FSRIAPVYDNLN-DLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93
+ + A + + + ++ + + + + VLD+ CG G L L+++
Sbjct: 17 WHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG-- 74
Query: 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
+ +G+D + + A + + + +P +D I + L
Sbjct: 75 -IEAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKD-YDLICANFAL-L 127
Query: 154 VVDKRKALEESFRVLKPGSRI 174
D + L +L PG +
Sbjct: 128 HQDIIELLSAMRTLLVPGGAL 148
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 9e-18
Identities = 36/178 (20%), Positives = 57/178 (32%), Gaps = 21/178 (11%)
Query: 39 APVYDNLNDLLSFGQHRIW-KRMA--VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG 95
A + L G ++ + + VLD+ CG G + ++ +
Sbjct: 52 AEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA-LPEI 110
Query: 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV 155
GLD SK + A+ R Y + + + LPFSD DAI Y
Sbjct: 111 TTFGLDVSKVAIKAAAKR--------YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 160
Query: 156 DKRKALEESFRVLKPGSR--ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
EE RV+KPG + + E + G+ L +
Sbjct: 161 -----AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQS 213
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-17
Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 24/197 (12%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
+++ A +YD L + ++ W + D+ LD+ CG+G+L+ L
Sbjct: 3 YNKFAHIYDKLIR--ADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCP--- 57
Query: 93 SQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG- 150
+ +D S+ LS A ++ ++ D +L + FD IT
Sbjct: 58 -KFKNTWAVDLSQEMLSEAENK----FRSQGLKPRLACQDISNLNINRK-FDLITCCLDS 111
Query: 151 ---LRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207
+ + D +K + LK G + D N + + + +N
Sbjct: 112 TNYIIDSDDLKKYFKAVSNHLKEGGVF-IFDINS-----YYKLSQVLGNNDFNYDDDEVF 165
Query: 208 LAEEYQYLKSSIREFLT 224
E Q+ + +++
Sbjct: 166 YYWENQFEDDLVSMYIS 182
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-17
Identities = 26/147 (17%), Positives = 40/147 (27%), Gaps = 31/147 (21%)
Query: 41 VYDNLNDLLSFGQHRIWKRMAVSWSGAKT-----------GDNVLDVCCGSGDLSFLLSE 89
YD L L +H W R+ T VL+ CG G +
Sbjct: 10 SYDRLARELGGYRHP-WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGP 68
Query: 90 QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDC-FFDAITM 147
Q + DFS L +A + + + E + LP F I
Sbjct: 69 QA---ARWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIVS 117
Query: 148 GYGLRNVVDKRKALEESFRVLKPGSRI 174
G + + + P +
Sbjct: 118 RRGPTS------VILRLPELAAPDAHF 138
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 8e-17
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
++D CG+G + LS+ VIGLD SK+ L +A+ NI +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQFFPR---VIGLDVSKSALEIAAKE------NTAANISYRL 107
Query: 130 GDALDL----PFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKS 182
D L DA + + + + +L + +++
Sbjct: 108 LDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167
Query: 183 TQPFTTAIQEW 193
F ++ E
Sbjct: 168 CIDFFNSLLEK 178
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 2e-16
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 15/176 (8%)
Query: 15 RSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGD 71
S R Y + E E + L SF + + + + + G+
Sbjct: 66 LSLIRKFYVNLGMKLEM-EKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGE 124
Query: 72 NVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130
+ + G L+ LLS G +V ++ + ++ + ++ + + G
Sbjct: 125 RAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS---RKVIEGLGVDGVNVITG 179
Query: 131 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186
D + + FD + KR+ R + +RI +
Sbjct: 180 DETVIDGLE--FDVL---MVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAIL 230
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 3e-16
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 25/146 (17%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
+ D +L + CG+ LS+ L V +D+S ++ + A + W
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQAC-----YAHVPQLRW 93
Query: 128 VEGDALDLPFSDCFFDAI---------------TMGYGLRNVVDKRKALEESFRVLKPGS 172
D L F FD + V + L E RVL PG
Sbjct: 94 ETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG 153
Query: 173 RISVLDFNKS---TQPFTTAIQEWMI 195
R + T+ + A W +
Sbjct: 154 RFISMTSAAPHFRTRHYAQAYYGWSL 179
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 5e-16
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 9/133 (6%)
Query: 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 115
R ++ LD G G ++ L ++ + L+ K+ L A
Sbjct: 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHMLEEAKRE-- 135
Query: 116 LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSR 173
A +++ +D I + + + D K + + L P
Sbjct: 136 ---LAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGY 192
Query: 174 ISVLDFNKSTQPF 186
I + + F
Sbjct: 193 IFFKENCSTGDRF 205
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 7e-16
Identities = 40/242 (16%), Positives = 69/242 (28%), Gaps = 40/242 (16%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSF 85
+ + + IA +YD ++ HR + + ++LDV CG+G
Sbjct: 8 AGPQADYSGEIAELYDLVHQGKGKDYHR-EAADLAALVRRHSPKAASLLDVACGTGMHLR 66
Query: 86 LLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144
L++ V GL+ S + L++A R + GD D F A
Sbjct: 67 HLAD----SFGTVEGLELSADMLAIARRR--------NPDAVLHHGDMRDFSLGRR-FSA 113
Query: 145 ITMGYG----LRNVVDKRKALEESFRVLKPGSR--ISVLDFNKSTQPFTTAIQEWMIDNV 198
+T + L + ALE + P + F ++ P A
Sbjct: 114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGT 173
Query: 199 VVPVASGYGLAEEYQYLKSSIREFLTGK-----------------DLEKLALEIGFSRAK 241
V S E ++ + E+ G S
Sbjct: 174 TVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEF 233
Query: 242 HY 243
Sbjct: 234 MP 235
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-15
Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 42/232 (18%)
Query: 39 APVYDNLNDLLSFGQHRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG- 95
A VYD + S ++LDV CG+G ++ +
Sbjct: 9 ADVYDLFYLG-RGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTK----EFG 63
Query: 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG----L 151
GL+ S++ L+ A R + +GD D F A+ + L
Sbjct: 64 DTAGLELSEDMLTHARKR--------LPDATLHQGDMRDFRLGRK-FSAVVSMFSSVGYL 114
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF---TTAIQEWMIDNVVVPVASGYGL 208
+ + A+ L+PG + V++ + F + D V S
Sbjct: 115 KTTEELGAAVASFAEHLEPGGVV-VVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVR 173
Query: 209 AEEYQYLKSSIREFLTGK-----------------DLEKLALEIGFSRAKHY 243
++ GK + E G
Sbjct: 174 EGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLE 225
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-15
Identities = 31/158 (19%), Positives = 42/158 (26%), Gaps = 33/158 (20%)
Query: 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112
Q + A D ++D CG G + + GS+ V G+ S Q +
Sbjct: 104 QAE---FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSR--VEGVTLSAAQADFGNR 158
Query: 113 R------QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM----GYGLRNVVDKRKALE 162
R D V + LD PF A Y VD
Sbjct: 159 RARELRIDDHV--------RSRVCNMLDTPFDKGAVTASWNNESTMY-----VDLHDLFS 205
Query: 163 ESFRVLKPGSR-----ISVLDFNKSTQPFTTAIQEWMI 195
E R LK G R + + I
Sbjct: 206 EHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE 243
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 2e-15
Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 8/207 (3%)
Query: 37 RIAPVYDNLNDLLSFGQHRIWKRMAVSW-SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG 95
+A V+ ++ G I + + NV D+ C G + +
Sbjct: 25 NVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPN 84
Query: 96 -KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154
K+IG+D S+ + + + +E + D + + +
Sbjct: 85 VKIIGIDNSQPMVERCRQH--IAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPP 142
Query: 155 VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214
D+ L + + L P + + + + + + A+GY E Q
Sbjct: 143 EDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK--RANGYSELEVSQK 200
Query: 215 LKS--SIREFLTGKDLEKLALEIGFSR 239
+ ++ + + + +GFS+
Sbjct: 201 RTALENVMRTDSIETHKVRLKNVGFSQ 227
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 4e-15
Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 7/139 (5%)
Query: 42 YDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
Y +++ + + +R LD G G ++ L + + V +D
Sbjct: 52 YGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFRE--VDMVD 109
Query: 102 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RK 159
+++ L A + + + + + D +D I + + + ++ D+ +
Sbjct: 110 ITEDFLVQAKTY---LGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAE 166
Query: 160 ALEESFRVLKPGSRISVLD 178
L L+P I + D
Sbjct: 167 FLRRCKGSLRPNGIIVIKD 185
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 1e-14
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 8/154 (5%)
Query: 24 RVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVCCGS 80
S LF + P+ + + G I+ + A V G VL+ GS
Sbjct: 51 GSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGS 110
Query: 81 GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140
G L+ L VG G+VI + + A N V D D D
Sbjct: 111 GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 170
Query: 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
D + +++ + L+ R+L G +
Sbjct: 171 SVDRAVL-----DMLAPWEVLDAVSRLLVAGGVL 199
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-14
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVS 118
A+ S A+ V+D+ CG G+L +L + ++ G+D S L +A R + +
Sbjct: 24 ALKQSNARR---VIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLP 79
Query: 119 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKA--LEESFRVLKPGSRI 174
+ ++ ++ ++G +DA T+ + ++ R F +P I
Sbjct: 80 RNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-14
Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K VLD+ C SG L + E +V G++ A K ++
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQA--------KEKLDHVVL 79
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR--ISVLDFNKSTQP 185
+ + +D+P+ + FD + G L ++ D +E+ +K S+ N S
Sbjct: 80 GDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP--NVSHIS 137
Query: 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE-----FLTGKDLEKLALEIGFS 238
+ LA + Y + + + F T ++ ++ L+ G+S
Sbjct: 138 VLAPL-----------------LAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS 178
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-14
Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 32/232 (13%)
Query: 39 APVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KV 97
A Y DL+ R + +G VL++ G G L+F + G +V
Sbjct: 56 ADTYR---DLIQDADGTSEAREFATRTGPV-SGPVLELAAGMGRLTFPFLDL----GWEV 107
Query: 98 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV-- 155
L+ S + L+ R V+GD F + + G N +
Sbjct: 108 TALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKR-FGTVVISSGSINELDE 166
Query: 156 -DKRKALEESFRVLKPGSRISVLDFN-----------KSTQPFTTAIQEWMIDNVVVPVA 203
D+R L+PG + +L + + + + +++ +P
Sbjct: 167 ADRRGLYASVREHLEPGGKF-LLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225
Query: 204 SG------YGLAEEYQYLKSSIRE-FLTGKDLEKLALEIGFSRAKHYELSGG 248
++ + R L + + + GF + G
Sbjct: 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASG 277
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 3e-14
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR---QDLVSKACYKNIEWVE 129
++D CGSG L L + S +IG+D S L+ A+ + K+ +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 130 GDALDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPG 171
G L+ D T + ++ + + + E+ + P
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 6e-14
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
N L++ C +G + L+ + +D + A R + +I W
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPHCKR---LTVIDVMPRAIGRACQRT-----KRWSHISWAA 103
Query: 130 GDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186
D L ++ FD I + Y L ++ R A++ ++L PG + +T
Sbjct: 104 TDILQFSTAEL-FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRR 162
Query: 187 TTAI 190
+
Sbjct: 163 WGHV 166
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 6e-14
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)
Query: 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKA 120
VS + +L + G G + L+ G +V +D S L+ A ++
Sbjct: 22 VSVANQIPQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQL----AQE 73
Query: 121 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180
I V+ + D ++ I + +++ + ++ LKPG + F
Sbjct: 74 KGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133
Query: 181 KSTQPFTT 188
+ T
Sbjct: 134 PEQLQYNT 141
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 1e-13
Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 22 YGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVCC 78
G S + F ++ I + A + G + G ++L+V
Sbjct: 62 PGDELIVS--GKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGV 119
Query: 79 GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138
GSG++S + + +G + ++ ++ L A +L N+ D D
Sbjct: 120 GSGNMSSYILYALNGKGTLTVVERDEDNLKKA--MDNLSEFYDIGNVRTSRSDIADFIS- 176
Query: 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177
D +DA+ ++ D +++ ++KPGS +
Sbjct: 177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFY 210
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 5e-13
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVEG 130
V+D+ CG G+L LL + S ++ G+D S + L A R D + + K I +
Sbjct: 33 VIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91
Query: 131 DALDLPFSDCFFDAITMGYGLRNVVDKRKA--LEESFRVLKPGSRI-SVL--DFNKSTQP 185
+ +DA T+ + ++ + R + F +P + I S ++N
Sbjct: 92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN 151
Query: 186 FTTA-------IQEWMIDNV---VVPVASGYGLAEEYQ 213
EW V VA YG + +
Sbjct: 152 LFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 7e-13
Identities = 24/212 (11%), Positives = 66/212 (31%), Gaps = 29/212 (13%)
Query: 42 YDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGD-----LSFLLSEQVGSQGK 96
+ + + + + K+ +L + G+G+ LS + ++ G
Sbjct: 25 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84
Query: 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA------LDLPFSDCFFDAITMGYG 150
++ S Q++ S W + + + +D I M
Sbjct: 85 NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144
Query: 151 LRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE 210
L V D L+ +L +++ ++ + S+ +
Sbjct: 145 LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGS---------------- 188
Query: 211 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 242
++ + + +++T DL ++ +G +
Sbjct: 189 --RFPQDDLCQYITSDDLTQMLDNLGLKYECY 218
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 8e-13
Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 21/159 (13%)
Query: 36 SRIAPVYDNL-NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
A V+ D S +K + VLDV CG+G S +L E +
Sbjct: 25 GEAARVWQLYIGDTRSRTAE--YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE----E 78
Query: 95 G-KVIGLDFSKNQLSMASSR-QDLVSKACYKNIEWVEGDALDLPFSDCF---FDAITM-- 147
G V +D S L A + + + E + L L FDA+
Sbjct: 79 GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138
Query: 148 ---GY---GLRNVVDKRKALEESFRVLKPGSRISVLDFN 180
+ + + R AL+ +++PG + V+D
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL-VIDHR 176
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 8e-13
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113
H + V+D G+G+ + L+ G KV D + L S R
Sbjct: 13 HDFLAEVL------DDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQR 63
Query: 114 QDLVSKACYKNIEWVEGDA------LDLPFSDCFFDAITMGYGLRNVVDKR----KALEE 163
+S +N E + + P F+ + ++V+ K +A+E+
Sbjct: 64 ---LSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEK 120
Query: 164 SFRVLKPGSRISVL 177
L+ G R++++
Sbjct: 121 ILDRLEVGGRLAIM 134
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 2e-12
Identities = 22/136 (16%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 118
+ V+++G GD +++ GSG L+ L+ VG +G+V+ + ++ +A + +
Sbjct: 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA---WENIK 139
Query: 119 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178
A + + ++ + + D + + ++ + +E + + LKPG
Sbjct: 140 WAGFDDRVTIKLKDIYEGIEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAY- 193
Query: 179 FNKSTQPFTTAIQEWM 194
P + +
Sbjct: 194 -----TPCSNQVMRLH 204
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-12
Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 23/134 (17%)
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR------QDLVSK 119
K G +LD+ GSG++ + G G+D S + A R + V
Sbjct: 33 RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERV-- 88
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPGSRISV 176
++ DA + D + A E + LKPG + +
Sbjct: 89 ------HFIHNDAAGYVA-NEKCDVAACVGATW---IAGGFAGAEELLAQSLKPGGIMLI 138
Query: 177 LDFNKSTQPFTTAI 190
+ P T I
Sbjct: 139 GEPYWRQLPATEEI 152
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 6e-12
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113
+ + + + A+ G VLD GSG ++ + +G V D + +L +A
Sbjct: 188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLA--- 244
Query: 114 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAI--TMGYGLRNVVDK------RKALEESF 165
++ + I ++ DA LP D I +GLR + L +
Sbjct: 245 REAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGAL 304
Query: 166 RVLKPGSRISVL 177
+L PG R+++L
Sbjct: 305 ALLPPGGRVALL 316
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 7e-12
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 42 YDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
Y + + + R+ K VLD+ CG G+ L E+ + IG+D
Sbjct: 14 YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVD 70
Query: 102 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFSDCFFDAITMGYGLRNVVDKR- 158
+++ + K C V+ DA++ D + D + + + + ++ +R
Sbjct: 71 INEDMI-----------KFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL 119
Query: 159 -KALEESFRVLKPGSRI 174
+ L + +K S I
Sbjct: 120 FELLSLCYSKMKYSSYI 136
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 7e-12
Identities = 34/159 (21%), Positives = 45/159 (28%), Gaps = 31/159 (19%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIW-----KRMAVSWSGAKTGDNVLDVCCGSGD 82
SS Q LF P L Q + W R+A V D CG
Sbjct: 22 SSAAQRLFQE-DPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCR 80
Query: 83 LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142
L+ + V D + D +P D
Sbjct: 81 LASSIRN------PVHCFDL------------------ASLDPRVTVCDMAQVPLEDESV 116
Query: 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181
D L + R LEE+ RVLKPG + V + +
Sbjct: 117 DVAVFCLSLMGT-NIRDFLEEANRVLKPGGLLKVAEVSS 154
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-11
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
G +L++ CG+G + + G V D S + AS R
Sbjct: 42 PAGAKILELGCGAGYQAEAMLAA-GFD--VDATDGSPELAAEASRR---------LGRPV 89
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPG 171
L D +DA+ L +V + L+ +R LKPG
Sbjct: 90 RTMLFHQLDAIDA-YDAVWAHACLLHVPRDELADVLKLIWRALKPG 134
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 11/127 (8%)
Query: 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKA 120
+ LD+ CG+G S L+ G V D + ++ + + S
Sbjct: 25 LEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANV---ERIKSIE 77
Query: 121 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLR--NVVDKRKALEESFRVLKPGSRISVLD 178
N+ D +L F +D I L + R KPG ++
Sbjct: 78 NLDNLHTRVVDLNNLTFDRQ-YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
Query: 179 FNKSTQP 185
+
Sbjct: 137 AMDTADY 143
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-10
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 12/177 (6%)
Query: 48 LLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107
+F + M +++ N+L++ GD + L E + ++ S+ +
Sbjct: 21 AYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAI 77
Query: 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE-SFR 166
S A R I ++ D +D I + + L ++ D L+ +
Sbjct: 78 SHAQGRLK-------DGITYIHSRFEDAQLPRR-YDNIVLTHVLEHIDDPVALLKRINDD 129
Query: 167 VLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223
L G R+ ++ N + A++ +I + + + Y ++
Sbjct: 130 WLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDA 186
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 2e-10
Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 36/205 (17%)
Query: 41 VYDNLNDLLSFGQHRIW-----KRMAVSWSG-----AKTGDNVLDVCCGSGDLSFLLSEQ 90
VY + ++R W K A G K GD +L + SG + +S+
Sbjct: 39 VYGERIFRYNGEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDI 98
Query: 91 VGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDLPFSDCFFDAITMGY 149
+G +G++ G++F+ +DL++ +NI + GDA + + Y
Sbjct: 99 IGPRGRIYGVEFA------PRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLY 152
Query: 150 GLRNV-VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208
+ + L+ G + + AI+ ID P
Sbjct: 153 ADVAQPEQAAIVVRNARFFLRDGGYMLM------------AIKARSIDVTTEPSEV---Y 197
Query: 209 AEEYQYLKSS---IREFLTGKDLEK 230
E + L I++ + ++
Sbjct: 198 KREIKTLMDGGLEIKDVVHLDPFDR 222
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 6e-10
Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 36/209 (17%)
Query: 25 VRCSSERQELFSRIA----PVYDNLNDLLSFGQHRIWKRMAVSWSGA----------KTG 70
V + + ++ VY ++RIW A K G
Sbjct: 15 VIDDDGSERIATKNLVPGQRVYGERVIKWEGEEYRIWNPNRSKLGAAIMNGLKNFPIKPG 74
Query: 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVE 129
+VL + SG + +S+ VG +GK+ G++FS ++LV +NI +
Sbjct: 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFS------PRVLRELVPIVEERRNIVPIL 128
Query: 130 GDALD-------LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182
GDA +P D F+ + + ++ + LK G + KS
Sbjct: 129 GDATKPEEYRALVPKVDVIFEDVAQPT------QAKILIDNAEVYLKRG--GYGMIAVKS 180
Query: 183 TQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
T E + V ++ + + E
Sbjct: 181 RSIDVTKEPEQVFREVERELSEYFEVIER 209
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-09
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 40 PVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK 96
P + + ++ + + K GD ++D GSG + +L+ VGS GK
Sbjct: 80 PSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGK 139
Query: 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD 156
V + + +A +L + + D + DA+ + +V D
Sbjct: 140 VFAYEKREEFAKLA--ESNLTKWGLIERVTIKVRDISEGFDEK-DVDALFL-----DVPD 191
Query: 157 KRKALEESFRVLKPGSRISVL 177
+++ + LK G R + +
Sbjct: 192 PWNYIDKCWEALKGGGRFATV 212
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-09
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 118
M +S GD VL+ GSG +S LS+ VGSQG+VI + K+ +A
Sbjct: 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 154
Query: 119 KAC--------YKNIEWVEGDALDLPFSDC--FFDAITMGYGLRNVVDKRKALEESFRVL 168
+ N++++ D FDA+ + ++++ L + L
Sbjct: 155 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHL 209
Query: 169 KPGSRI 174
K G
Sbjct: 210 KHGGVC 215
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-09
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 27/147 (18%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
G +LDV L L E+ G I + + A +++ + + I+
Sbjct: 16 GAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSA--VKNVEAHGLKEKIQVRL 72
Query: 130 GDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186
+ L IT MG L + LEE L R+ +L QP
Sbjct: 73 ANGLAAFEETDQVSVITIAGMGGRLI-----ARILEEGLGKLANVERL-IL------QPN 120
Query: 187 TTA--IQEWMIDNVVVPVASGYGLAEE 211
++ W+ D+ G+ + E
Sbjct: 121 NREDDLRIWLQDH-------GFQIVAE 140
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-09
Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 26/202 (12%)
Query: 32 QELFSRIAPVYDNLNDLLSFGQHR------IWKRMAVSWSGAKTGDNVLDVCCGSGDLSF 85
Q++++ + LN+ F + D +D+ G G +
Sbjct: 130 QQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVL 189
Query: 86 LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC------YKNIEWVEGDALDLPFSD 139
++ + G++ + A + K + GD L + +
Sbjct: 190 QVAAATNCK-HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 248
Query: 140 CFFDA---ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMID 196
+ + VD + L+E F +K G RI K P I +
Sbjct: 249 RIANTSVIFVNNFAFGPEVDHQ--LKERFANMKEGGRIVSS---KPFAPLNFRINSRNLS 303
Query: 197 NVVVPVASGYGLAEEYQYLKSS 218
++ E LK S
Sbjct: 304 DI-----GTIMRVVELSPLKGS 320
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+A+S K + + D+ GSG ++ + Q + + S+ + S
Sbjct: 16 LAISALAPKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSNAI---N 71
Query: 120 ACYKNIEWVEGDALD-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
+ V+ A D I +G G + +++ L G R+
Sbjct: 72 LGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG----LTAPGVFAAAWKRLPVGGRL 123
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 54.2 bits (129), Expect = 8e-09
Identities = 33/198 (16%), Positives = 57/198 (28%), Gaps = 28/198 (14%)
Query: 65 SGAKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR----QDLVSK 119
K VLD+ CG G DL ++ K++ D + + R ++
Sbjct: 30 QKKKRDITVLDLGCGKGGDLLKWKKGRI---NKLVCTDIADVSVKQCQQRYEDMKNRRDS 86
Query: 120 ACYKNIEWVEGDALDLPFSDCF------FDAIT----MGYGLRNVVDKRKALEESFRVLK 169
+ E++ D+ D F FD + Y + L + L
Sbjct: 87 EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS 146
Query: 170 PGSRISVLDFNKSTQ-PFTTAIQEWMIDNVVVPV-------ASGYGLAEE-YQYLKSSIR 220
PG N A + N + V +G + +
Sbjct: 147 PGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVP 206
Query: 221 EFLTGKD-LEKLALEIGF 237
EFL L ++A +
Sbjct: 207 EFLVYFPLLNEMAKKYNM 224
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-08
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 24/188 (12%)
Query: 67 AKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125
K GD+VLD+ CG G DL + G+ G+D ++ ++ A R + + +
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGI---GEYYGVDIAEVSINDARVRARNMKRRFK--V 116
Query: 126 EWVEGDALDLPFSDCF-FDAITMGYGL----RNVVDKRKALEESFRVLKPGSRISVLDFN 180
+ D+ FD I+ + A R L+PG + +
Sbjct: 117 FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176
Query: 181 KSTQPFTTAIQEWMIDNVVVPV-------ASGYGLAEEYQYLKSSI---REFLTGKD-LE 229
+ ++ + N + + E L S+ E+ +
Sbjct: 177 R--DVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMV 234
Query: 230 KLALEIGF 237
+G
Sbjct: 235 DGFKRLGL 242
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-08
Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 21 SYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVC 77
G V + +E S P + + + + A V+ G VL+
Sbjct: 46 GPGGVVRTHLGEE-LSVHRPTLEEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAG 104
Query: 78 CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137
GSG L+ L+ VG +G V + + L+ A +++ + +N+ + G +
Sbjct: 105 TGSGGLTLFLARAVGEKGLVESYEARPHHLAQA--ERNVRAFWQVENVRFHLGKLEEAEL 162
Query: 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
+ +D + + ++++ K LE++ LKP +
Sbjct: 163 EEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFL 194
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 23/147 (15%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
G +LDV L L + G I + A +++ I+
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSA--LKNVSEHGLTSKIDV 76
Query: 128 VEGDALD-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186
+ L +D G G R + L L+ + VL QP
Sbjct: 77 RLANGLSAFEEADNIDTITICGMGGRLI---ADILNNDIDKLQHVKTL-VL------QPN 126
Query: 187 TTA--IQEWMIDNVVVPVASGYGLAEE 211
+++W+ N + + E
Sbjct: 127 NREDDLRKWLAAN-------DFEIVAE 146
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 8e-08
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112
+ ++ KR+ S + + D+ L + + I + A
Sbjct: 5 EEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSA-- 61
Query: 113 RQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLK 169
++ + S + I+ +G+ L + D I MG L R LEE L
Sbjct: 62 QKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLI-----RTILEEGAAKLA 116
Query: 170 PGSRISVLDFNKSTQPFTTA--IQEWMIDNVVVPVASGYGLAEE 211
+++ +L QP A ++EW N + + E
Sbjct: 117 GVTKL-IL------QPNIAAWQLREWSEQN-------NWLITSE 146
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 9e-08
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN 124
+ + L CG G ++ V+GLD S++ L+ A+ KA
Sbjct: 62 TSSLPLGRALVPGCGGGHDVVAMASP-ERF--VVGLDISESALAKANETYGSSPKAE--Y 116
Query: 125 IEWVEGDALDLPFSDCFFDAITMGYGL--RNVVDKRKALEESFRVLKPGSRISVLDFNKS 182
+V+ D ++ FD I + + + +LKP + L + +
Sbjct: 117 FSFVKEDVFTWRPTEL-FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT 175
Query: 183 TQP 185
Sbjct: 176 DHV 178
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-07
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ-DLVSKACYKNIEWVEGD 131
+D+ G G + L+ + IG+D K L S + SK N+ +V
Sbjct: 28 HIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA 86
Query: 132 ALDLPFS-DCFFDAITMGY-----GLRNVVDKRKALEESFRVLKPGSRISVLDFN 180
A LPF D+I++ + + R L + K + +
Sbjct: 87 AESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTY 141
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 21/166 (12%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSW-----------SGAKTGDNVLDVCCGSG 81
+ + R+ + D+L L F + + + VLD+ CG G
Sbjct: 73 QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132
Query: 82 DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141
S LS G V D ++N ++ + + NI D +
Sbjct: 133 RNSLYLSLL-GYD--VTSWDHNENSIAFLNET----KEKENLNISTALYDINAANIQEN- 184
Query: 142 FDAITMGYGLR--NVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
+D I N ++ G ++ +
Sbjct: 185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDV 230
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 29/142 (20%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLS------EQVGSQGKVIGLDFSKNQLSMASS 112
+ K ++LD CG+ + L + + G+D +S+A
Sbjct: 120 YLLEKVIQKKKNVSILDPACGTA--NLLTTVINQLELKGDVDVHASGVDVDDLLISLALV 177
Query: 113 RQDLVSKACYKNIEWVEGDAL-------------DLPFSDCFFDAITMGYGLRNVVDKRK 159
DL + + + D L DLP D + L
Sbjct: 178 GADL----QRQKMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSF 233
Query: 160 A----LEESFRVLKPGSRISVL 177
A +E+ R KPG + L
Sbjct: 234 AHFLFIEQGMRYTKPGGYLFFL 255
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 58 KR--MAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113
+ A D +DV CG+G ++ L+ +V +V +D +N +++++
Sbjct: 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAID--RNPEAISTTE 72
Query: 114 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 173
+L N+ +EGDA + D +G + ++ L LKPG R
Sbjct: 73 MNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL---QEILRIIKDKLKPGGR 129
Query: 174 I 174
I
Sbjct: 130 I 130
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 3e-06
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 5/139 (3%)
Query: 42 YDNLNDLLSF-GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGL 100
Y N + R+ V G +VLD+ C G L+ ++ + G +++GL
Sbjct: 18 YGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGL 76
Query: 101 DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKA 160
D + A + + + + P ++ T+ +
Sbjct: 77 DIDSRLIHSA---RQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTAS 133
Query: 161 LEESFRVLKPGSRISVLDF 179
P F
Sbjct: 134 RGPIAAPQVPLDGADTSVF 152
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-06
Identities = 51/310 (16%), Positives = 98/310 (31%), Gaps = 90/310 (29%)
Query: 4 LQLCLPFSSTSRSQFR-F--SYGRVRCSSER----QELFSRIAPVYDNLNDLLSFGQHRI 56
L +CL + + F+ F + Q+L +I P + + +D S + RI
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 57 -----WKRMAVSWSGAKTG----DNV--------LDVCC----GSGDLSFLLSEQVGSQG 95
R + + NV ++ C + +++ + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ--VTDFLSAAT 285
Query: 96 -KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD--AITM-GYGL 151
I LD L+ + L+ K +++ DLP + +++ +
Sbjct: 286 TTHISLDHHSMTLTPDEVK-SLLLK-------YLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 152 RNVVD------------KRKALEESFRVLKPG------SRISVLDFNKSTQ-PFTTAIQE 192
R+ + +E S VL+P R+SV F S P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLI 395
Query: 193 W--MIDNVVVPVASG---YGLAEE------------YQYLKSSIREFLTGKDLEKLALEI 235
W +I + V+ V + Y L E+ Y LK + L + ++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE---YALHRSIVD- 451
Query: 236 GFSRAKHYEL 245
HY +
Sbjct: 452 ------HYNI 455
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 27/202 (13%), Positives = 70/202 (34%), Gaps = 29/202 (14%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
V+ + + VLD+ G +++ ++ G+D++ + ++++ +
Sbjct: 158 LVNENKIEPL-KVLDISASHGLFGIAVAQH-NPNAEIFGVDWAS---VLEVAKENARIQG 212
Query: 121 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLD 178
+ G A ++ + + + D + + L + + L + L ++ V D
Sbjct: 213 VASRYHTIAGSAFEVDYGNDY-DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD 271
Query: 179 F---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEI 235
F + P A ++ +G + T + E +
Sbjct: 272 FIPNSDRITPPDAA---AFSLVMLATTPNG--------------DAY-TFAEYESMFSNA 313
Query: 236 GFSRAKHYELSGGLMGNLVATR 257
GFS ++ + L +VA +
Sbjct: 314 GFSHSQLHSLPTTQQQVIVAYK 335
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 31/186 (16%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
G K ++DV G GD+S + + + L+ ++ ++ K
Sbjct: 185 EAKLDGVKK---MIDVGGGIGDISAAMLKHF-PELDSTILNLPG---AIDLVNENAAEKG 237
Query: 121 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLD 178
+ + D + + DA+ L + + +++F ++ G R+ +LD
Sbjct: 238 VADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295
Query: 179 F---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEI 235
+ F + + V +++ +
Sbjct: 296 MVIDDPENPNFDYLSHYILGAGMPFSVLGFK-----------------EQARYKEILESL 338
Query: 236 GFSRAK 241
G+
Sbjct: 339 GYKDVT 344
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-06
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 51 FGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110
F + +R+ ++ AK + V+D+ G G L V + KVI ++
Sbjct: 108 FSPANVKERVRMA-KVAKPDELVVDMFAGIG--HLSLPIAVYGKAKVIAIEKDPYTFKFL 164
Query: 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKP 170
+++ + D D P + D I MGY VV + + ++ + K
Sbjct: 165 --VENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY----VVRTHEFIPKALSIAKD 217
Query: 171 GSRISVLDFNKSTQPFTTAIQE 192
G+ I + +
Sbjct: 218 GAIIHYHNTVPEKLMPREPFET 239
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 30/204 (14%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
V K +LD+ +G + + + +V +D QL M R+ +
Sbjct: 174 IVFSHHPKR---LLDIGGNTGKWATQCVQYN-KEVEVTIVDLP-QQLEMM--RKQTAGLS 226
Query: 121 CYKNIEWVEGDALD--LPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISV 176
+ I + LD +PF F DA+ M L ++ L + + S++ +
Sbjct: 227 GSERIHGHGANLLDRDVPFPTGF-DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI 285
Query: 177 LDF---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL 233
++ + + + + + + + A+G + F DL +
Sbjct: 286 METLWDRQRYETASYCLTQISLYFTAM--ANGNS------------KMF-HSDDLIRCIE 330
Query: 234 EIGFSRAKHYELSGGLMGNLVATR 257
G + + G L
Sbjct: 331 NAGLEVEEIQDNIGLGHSILQCRL 354
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 39/192 (20%), Positives = 61/192 (31%), Gaps = 39/192 (20%)
Query: 53 QHRIWKRMAVSWSGA----------KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102
++R W + A K G VL + SG +S+ VG G V ++F
Sbjct: 51 EYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
Query: 103 SKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDLPFSDCFF----DAITMGYGLRNVVDK 157
S S +DL++ A NI V DA P D I +
Sbjct: 111 S------HRSGRDLINLAKKRTNIIPVIEDA-RHPHKYRMLIAMVDVIFADVAQPD--QT 161
Query: 158 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217
R + L+ G + +I+ ID+ A A E + ++
Sbjct: 162 RIVALNAHTFLRNGGHFVI------------SIKANCIDSTASAEAV---FASEVKKMQQ 206
Query: 218 SIREFLTGKDLE 229
+ LE
Sbjct: 207 ENMKPQEQLTLE 218
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 34/203 (16%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
++ A+T V+D+ G G + + Q D + ++R+ + +
Sbjct: 174 LGVFARART---VIDLAGGHGTYLAQVLRRH-PQLTGQIWDLPT---TRDAARKTIHAHD 226
Query: 121 CYKNIEWVEGDAL-DLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVL 177
+E+ E + L F D + + L + R+ + + ++KPG + +L
Sbjct: 227 LGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLIL 286
Query: 178 DF---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE 234
+ P +A +++V G E + + + +
Sbjct: 287 TMTMNDDRVTPALSA---DFSLHMMVNTNHG----ELH-----------PTPWIAGVVRD 328
Query: 235 IGFSRAKHYELSGGLMGNLVATR 257
G + E S G L+ R
Sbjct: 329 AGLAVG---ERSIGRYTLLIGQR 348
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD-------FSKNQLSMASSRQDLVSKA 120
G LDV GSG L+ + VG GKVIG+D S N + R+D +
Sbjct: 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV-----RKDDPTLL 130
Query: 121 CYKNIEWVEGD-ALDLPFSDCFFDAI 145
++ V GD + + +DAI
Sbjct: 131 SSGRVQLVVGDGRMGYA-EEAPYDAI 155
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+A K G+ V+D+ G + L+E + ++GK+ D K ++ +D V +
Sbjct: 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRL---KDFVKR 306
Query: 120 ACYKNIEWVEGDALDLP--FSDCFFDAI 145
K ++ + DA P + D +
Sbjct: 307 MGIKIVKPLVKDARKAPEIIGEEVADKV 334
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
++D+C G+G + LLS + + K++G++ + MA ++ + IE +E
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMA--KRSVAYNQLEDQIEIIE 105
Query: 130 GDALDLP--FSDCFFDAITM--------GYGLRNVVDKRKA------------LEESFRV 167
D + D +T L+N + + + + +
Sbjct: 106 YDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASL 165
Query: 168 LKPGSRISVL 177
LK G + + +
Sbjct: 166 LKQGGKANFV 175
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 3e-05
Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 28/198 (14%)
Query: 65 SGAKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR---QDLVSKA 120
VL + G+G DL ++ ++ D + ++ + R + K
Sbjct: 44 LDDSNKRKVLAIDFGNGADLEKYFYGEI---ALLVATDPDADAIARGNERYNKLNSGIKT 100
Query: 121 CYKNIEWVEGD--------ALDLPFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLK 169
Y ++++ ++ F F+ I + + + +
Sbjct: 101 KYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA 160
Query: 170 PGSRISVLDFN-----KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS----IR 220
G ++ + + K T T I + + + Y S+ +
Sbjct: 161 SGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMT 220
Query: 221 EFLTGKD-LEKLALEIGF 237
E++ K+ + ++ E GF
Sbjct: 221 EYIIKKNDIVRVFNEYGF 238
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-05
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 29 SERQELFSRIAPVYDNLNDLLSFGQ---HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSF 85
++R LFSR D + +I + +A S + D V+D CG G +
Sbjct: 37 AQRYRLFSRFDDGI--KLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTI 94
Query: 86 LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135
+ +VI +D ++++A R + IE++ GD L L
Sbjct: 95 QFALTG---MRVIAIDIDPVKIALA--RNNAEVYGIADKIEFICGDFLLL 139
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 8e-05
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWV 128
G V+D+ G G L + + I ++ + A R ++ + K++ +
Sbjct: 94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAA--RHNIPLLLNEGKDVNIL 148
Query: 129 EGDALDL--PFSDCFFDAITMGYGLRNVVDKRKALEESF 165
GD + D I + R+ DKR
Sbjct: 149 TGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADC 187
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
+ + D+ GS +S S + G++ L+ + L K +N+
Sbjct: 39 QDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLK---KFVARNVTL 94
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
VE A + D + +G + + ++ R LK I
Sbjct: 95 VEAFAPEGLDDLPDPDRVFIGGSGGMLEE---IIDAVDRRLKSEGVI 138
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY 122
S + D+ G+G ++ ++ + +V + S+ A +L A +
Sbjct: 30 SLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF 88
Query: 123 KN-IEWVEGDALDLPFSDCF-------FDAITM 147
IE +E D + F + M
Sbjct: 89 SARIEVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G VL++ G G + + +E VG G V+ ++ A + K Y N+
Sbjct: 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT---LRKLGYDNVIV 132
Query: 128 VEGD-ALDLPFSDCFFDAI 145
+ GD L +D I
Sbjct: 133 IVGDGTLGYE-PLAPYDRI 150
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 31/186 (16%), Positives = 54/186 (29%), Gaps = 32/186 (17%)
Query: 22 YGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSG 81
YG E E + L + G + G VL + SG
Sbjct: 39 YGERLIKYEGVE-YREWNAFRSKLAGAILKGLKTNP---------IRKGTKVLYLGAASG 88
Query: 82 DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDA-------L 133
+S+ + GK G++FS ++L+ A NI + DA
Sbjct: 89 TTISHVSDIIELNGKAYGVEFS------PRVVRELLLVAQRRPNIFPLLADARFPQSYKS 142
Query: 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193
+ D + I A+ + LK + ++ +S T +
Sbjct: 143 VVENVDVLYVDIAQPD------QTDIAIYNAKFFLKVNGDMLLVIKARSIDV--TKDPKE 194
Query: 194 MIDNVV 199
+ V
Sbjct: 195 IYKTEV 200
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 5e-04
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112
+ + VL+ GSG L +LSE G + + A
Sbjct: 76 YPKDSFYI-ALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVW---TFEAVEEFYKTA-- 129
Query: 113 RQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGS 172
+++L KN+++ D D + F A + +V + LE+ + L G+
Sbjct: 130 QKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGA 184
Query: 173 RI 174
+
Sbjct: 185 PV 186
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 5e-04
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR-QDLVSKACYKNI 125
++ D VLDV G G + ++ Q V+ LD K+++ S++ +K N+
Sbjct: 25 SQYDDVVLDVGTGDGKHPYKVARQ-NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNL 83
Query: 126 EWVEGDALDLP---------FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
++ A LP + + + + L V +PG+
Sbjct: 84 LYLWATAERLPPLSGVGELHVLMPWGSLLR-----GVLGSSPEMLRGMAAVCRPGASF 136
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 5e-04
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN 124
K V+D+ CG G + + Q G +G +G D + +++ S ++++ +
Sbjct: 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTD 132
Query: 125 IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK-------RKALEESFRVLKPG 171
I +E D D +G + + L+ + L G
Sbjct: 133 IHRLEPVKCDTLLCD-------IG---ESSSSSVTEGERTVRVLDTVEKWLACG 176
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 6e-04
Identities = 29/210 (13%), Positives = 54/210 (25%), Gaps = 60/210 (28%)
Query: 43 DNLNDLLSFGQHRIWKRMAVS------------WSGAKTGDNVLDVCCGSGDLSFLLSEQ 90
L L + ++ AK LD+ +G + L+
Sbjct: 34 PALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAK---KALDLGTFTGYSALALALA 90
Query: 91 VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----------PFSD 139
+ + G+V+ + + R I+ AL+ F
Sbjct: 91 LPADGRVVTCEVDAQPPELG--RPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148
Query: 140 CFFDAITMGYGLRNVVDKR---KALEESFRVLKPGSRI---------SVLDFNKSTQPFT 187
DA DK E ++L+PG + VL
Sbjct: 149 AVVDA-----------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ-PPKGDVAA 196
Query: 188 TAIQEWM--------IDNVVVPVASGYGLA 209
++ + ++P+ G LA
Sbjct: 197 ECVRNLNERIRRDVRVYISLLPLGDGLTLA 226
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 45/171 (26%)
Query: 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN 124
+ V+ G G S+ + + +V+ +D ++ + A + ++ +
Sbjct: 55 KQPQ---LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHA---RRMLHDNGLID 108
Query: 125 -IEWVEGDALDL-----PFSDCFFDAITMGYGLRNVVDKR---KALEESFRVLKPGSRI- 174
+E GD L + F D D LE R L + +
Sbjct: 109 RVELQVGDPLGIAAGQRDIDILFMDC-----------DVFNGADVLERMNRCLAKNALLI 157
Query: 175 --------SVLDFNKSTQPFTTAIQEWM--------IDNVVVPVASGYGLA 209
SV + P T A++E+ +VPV +G L
Sbjct: 158 AVNALRRGSVAE--SHEDPETAALREFNHHLSRRRDFFTTIVPVGNGVLLG 206
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
G VL++ G+G + ++S VG +G V+ +++S+ +A V + +N+ +
Sbjct: 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN---VERLGIENVIF 130
Query: 128 VEGD-ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
V GD +P +D I + G+ V + F LK G R+
Sbjct: 131 VCGDGYYGVP-EFSPYDVIFVTVGVDEV---PETW---FTQLKEGGRV 171
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 7e-04
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G N+L+V GSG + L+SE V V ++ + A + +A KN+
Sbjct: 90 KPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRN---LERAGVKNVHV 144
Query: 128 VEGD-ALDLPFSDCFFDAI 145
+ GD + P +D I
Sbjct: 145 ILGDGSKGFP-PKAPYDVI 162
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 68 KTGDNVLDVCCGSG----DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKAC 121
K G +DV GSG ++ ++ VIGL+ K+ ++ + +D
Sbjct: 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLK 138
Query: 122 YKNIEWVEGD-----ALDLPFSDCFFDAI 145
N + + + + FDAI
Sbjct: 139 IDNFKIIHKNIYQVNEEEKK-ELGLFDAI 166
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.95 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.95 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.94 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.94 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.93 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.92 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.92 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.92 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.91 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.91 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.91 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.91 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.9 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.9 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.9 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.9 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.9 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.9 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.9 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.9 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.9 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.9 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.89 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.89 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.89 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.89 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.89 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.89 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.89 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.89 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.89 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.89 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.88 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.88 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.88 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.88 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.88 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.87 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.87 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.87 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.87 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.87 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.87 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.87 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.87 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.87 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.87 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.87 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.87 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.87 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.86 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.86 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.86 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.86 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.86 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.86 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.85 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.85 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.85 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.85 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.85 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.85 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.84 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.84 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.84 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.84 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.84 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.84 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.83 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.83 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.83 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.83 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.83 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.83 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.82 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.82 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.82 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.82 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.82 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.82 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.82 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.82 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.81 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.81 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.8 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.8 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.8 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.8 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.8 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.8 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.8 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.79 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.79 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.78 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.78 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.78 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.78 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.77 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.77 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.77 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.77 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.77 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.76 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.76 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.76 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.76 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.76 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.75 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.75 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.75 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.74 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.74 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.74 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.74 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.74 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.73 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.73 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.73 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.73 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.73 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.72 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.72 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.72 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.72 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.72 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.72 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.72 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.72 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.72 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.71 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.71 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.7 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.7 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.7 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.7 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.69 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.69 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.69 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.69 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.69 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.68 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.68 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.68 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.68 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.68 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.67 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.67 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.67 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.67 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.67 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.66 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.66 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.65 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.65 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.65 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.65 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.65 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.64 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.64 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.64 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.64 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.64 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.64 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.64 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.63 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.63 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.63 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.63 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.63 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.62 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.62 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.62 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.62 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.62 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.62 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.61 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.61 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.61 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.61 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.6 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.6 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.59 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.59 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.59 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.59 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.59 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.58 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.58 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.58 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.58 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.57 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.56 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.56 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.56 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.56 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.56 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.56 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.55 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.55 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.55 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.55 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.55 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.54 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.54 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.54 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.54 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.53 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.53 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.52 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.52 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.52 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.52 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.5 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.5 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.5 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.5 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.49 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.48 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.47 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.47 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.47 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.46 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.45 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.44 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.43 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.43 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.4 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.39 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.38 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.38 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.37 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.35 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.35 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.34 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.34 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.33 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.32 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.32 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.32 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.31 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.31 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.31 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.3 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.29 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.26 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.25 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.23 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.23 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.21 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.21 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.19 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.18 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.12 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.11 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 99.11 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.09 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.07 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.06 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.02 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.01 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.01 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.01 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.0 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.0 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.99 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.94 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.94 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.89 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.86 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.86 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.85 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.83 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.75 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.75 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.63 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.62 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.6 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.57 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.53 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.51 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.51 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.46 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.38 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.36 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.13 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.11 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.99 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.96 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.93 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.91 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.81 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.66 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.43 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.39 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.22 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.21 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.14 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.08 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.7 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.62 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.61 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.51 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.31 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.25 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.22 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.21 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.15 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.11 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.1 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.09 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.05 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.02 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.92 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.87 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.83 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.83 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.8 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.75 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.74 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.61 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.61 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.59 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.5 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.48 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 95.47 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.46 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.38 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.33 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.28 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.24 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.21 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.21 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.18 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.12 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.06 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.97 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.96 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.94 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.84 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.83 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.81 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.78 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.78 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.77 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.67 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.66 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.59 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.57 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.47 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.31 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.31 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.28 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.21 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.09 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.03 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.02 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.95 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.87 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.78 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.76 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.41 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.26 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 93.05 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.81 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.69 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.56 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.45 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.38 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 92.3 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.18 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.89 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 91.74 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.5 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.47 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 91.42 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 91.39 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.33 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.29 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 91.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.14 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 90.82 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.79 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.67 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.61 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.3 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 90.22 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.15 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.07 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 89.83 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 89.7 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.64 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.63 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 89.62 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.25 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.21 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 88.98 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.38 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 88.23 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 88.11 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.8 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.7 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 87.39 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 87.19 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 86.93 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.85 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.67 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.64 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 86.52 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 86.5 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 86.33 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 85.81 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 85.58 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 85.58 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.48 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 85.4 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 85.36 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 85.07 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 85.03 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 85.02 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 84.83 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 84.37 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 84.37 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.18 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 83.91 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 83.61 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 83.11 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 82.9 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 82.63 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 82.49 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 82.42 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 82.36 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 82.25 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 82.22 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 81.99 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 81.69 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 81.68 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 81.64 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 81.31 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 81.24 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 81.24 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 80.98 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 80.88 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 80.7 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 80.65 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 80.31 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 80.08 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=182.69 Aligned_cols=184 Identities=14% Similarity=0.192 Sum_probs=132.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..++.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.|++.|+++++..+.. .+++++++|+.++++ +.||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~--~~v~~~~~D~~~~~~--~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAI--ENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS--SCEEEEESCTTTCCC--CSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC--ceEEEeecccccccc--cccccc
Confidence 56888999999999999999998753 4679999999999999999998765433 589999999998875 469999
Q ss_pred EecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHH-HHHHHHhhhhhhhhccCC-chhhhhhhHHHHhc
Q 025144 146 TMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYG-LAEEYQYLKSSIRE 221 (257)
Q Consensus 146 ~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 221 (257)
++.++++++++ ...+|++++++|||||.+++.+........... ...++.... ...+... ..............
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~--~~~g~s~~ei~~~~~~l~~~~~ 221 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFK--RANGYSELEISQKRSMLENVML 221 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHH--HHTTGGGSTTHHHHHHHHHHCC
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHH--HHcCCCHHHHHHHHhhhccccc
Confidence 99999999964 467899999999999999999887766544322 222221111 0001000 00011111223445
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.++.+++.++|+++||+.++.+-... .+..++|+|
T Consensus 222 ~~s~~~~~~~L~~AGF~~ve~~fq~~-nF~~~iA~K 256 (261)
T 4gek_A 222 TDSVETHKARLHKAGFEHSELWFQCF-NFGSLVALK 256 (261)
T ss_dssp CBCHHHHHHHHHHHTCSEEEEEEEET-TEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCCeEEEEEEec-cEEEEEEEE
Confidence 67999999999999999888654322 355667776
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=179.51 Aligned_cols=210 Identities=19% Similarity=0.236 Sum_probs=151.0
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
+.++++|+..+..|+.............+ +.+...+. ..++.+|||+|||+|..+..+++.. ++.+++++|+|+.++
T Consensus 4 ~~~~~~f~~~a~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~ 81 (234)
T 3dtn_A 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFY-GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKML 81 (234)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHCTTHHHHH-HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhCcCHHHHH-HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHH
Confidence 45677899999999887664443334444 44444443 5677899999999999999999985 678999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHH--HHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+.++++.... .++.++++|+.+++++ ++||+|++..+++++++.. .++++++++|||||.+++.+...+...
T Consensus 82 ~~a~~~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 155 (234)
T 3dtn_A 82 EIAKNRFRGN-----LKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETA 155 (234)
T ss_dssp HHHHHHTCSC-----TTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSH
T ss_pred HHHHHhhccC-----CCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCh
Confidence 9999987543 3899999999998876 8999999999999998655 599999999999999999998876655
Q ss_pred hHHHHHHHHHhhhhhhhhccCCchhhhh-hhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCc
Q 025144 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
................ .......... .........++.+++.++|+++||++++.+....+
T Consensus 156 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 217 (234)
T 3dtn_A 156 FIENLNKTIWRQYVEN--SGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQ 217 (234)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETT
T ss_pred hhhhHHHHHHHHHHHh--cCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecc
Confidence 4332222111111100 0000000000 01112345679999999999999999988766444
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=172.35 Aligned_cols=182 Identities=22% Similarity=0.243 Sum_probs=136.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.+.+...+...++ +|||+|||+|..+..+++. ++.+++++|+|+.+++.+++++...+.. .++.++++|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~ 103 (219)
T 3dlc_A 29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLN--DRIQIVQGDVH 103 (219)
T ss_dssp HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECBTT
T ss_pred cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcccc--CceEEEEcCHH
Confidence 44455666666666666 9999999999999999987 5679999999999999999998765432 58999999999
Q ss_pred CCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhh
Q 025144 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
++++++++||+|++..+++|++++..++++++++|||||.+++.+...... ............. ..+.
T Consensus 104 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~ 171 (219)
T 3dlc_A 104 NIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKE-LRDSISAEMIRKN-----------PDWK 171 (219)
T ss_dssp BCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHH-HHHHHHHHHHHHC-----------TTHH
T ss_pred HCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHH-HHHHHHHHHHHhH-----------HHHH
Confidence 988888999999999999999999999999999999999999887554331 1111111111000 0011
Q ss_pred hhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEE
Q 025144 214 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252 (257)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~ 252 (257)
.........++.+++.++|+++||++++......+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~ 210 (219)
T 3dlc_A 172 EFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWII 210 (219)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEEEEE
T ss_pred hhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCceEEE
Confidence 111122345578999999999999999988776665443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=172.09 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=125.3
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhhhh---HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChh
Q 025144 29 SERQELFSRIAPVYDNLNDLLSFGQ---HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 105 (257)
++..++|+.++..|+.......... ...+. .++..+...++.+|||+|||+|.++..+++. +.+++++|+|+.
T Consensus 3 ~~~~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~ 78 (220)
T 3hnr_A 3 TEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYE-DILEDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSRE 78 (220)
T ss_dssp ---------------------CCTTTTTTTTHH-HHHHHHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHH
T ss_pred hhHHHHHHHHHHHHHHHhhcchHhHHHHHHHHH-HHHHHhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHH
Confidence 4566789999999988653221111 11122 2333333457789999999999999999876 579999999999
Q ss_pred HHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHH--HHHHHHhcccCCCEEEEEeecCCC
Q 025144 106 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRK--ALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~--~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+++.++++.. .++.++++|+.+++++ ++||+|++..+++++++... ++++++++|||||.+++.++....
T Consensus 79 ~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 150 (220)
T 3hnr_A 79 MRMIAKEKLP-------KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD 150 (220)
T ss_dssp HHHHHHHHSC-------TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSS
T ss_pred HHHHHHHhCC-------CceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccC
Confidence 9999998863 3899999999998877 89999999999999998776 999999999999999999877655
Q ss_pred chhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH--HhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 184 QPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS--IREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
............. ..+...... ...+++.+++.++|+++||+++.....
T Consensus 151 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 151 QDAYDKTVEAAKQ-------------RGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHHHH-------------TTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS
T ss_pred hHHHHHHHHHHHh-------------CCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc
Confidence 4433333222221 111111111 123558999999999999987766544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-24 Score=164.77 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=135.5
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...++.+|||+|||+|..+..+++..++..+++++|+|+.+++.++++....+. .++.++.+|+.+++++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL---KNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECBTTBCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEecccccCCCC
Confidence 3455556778888999999999999999999865678999999999999999998865542 4799999999998888
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+++||+|++..++++++++..+++++.++|||||.+++.++......... .
T Consensus 104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------------------~ 154 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------------------P 154 (219)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------------------C
T ss_pred CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------------------c
Confidence 88999999999999999999999999999999999999887755431100 0
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
..+.++.+++.++++++||++++........+ .++++
T Consensus 155 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~ 191 (219)
T 3dh0_A 155 PEEVYSEWEVGLILEDAGIRVGRVVEVGKYCF-GVYAM 191 (219)
T ss_dssp GGGSCCHHHHHHHHHHTTCEEEEEEEETTTEE-EEEEE
T ss_pred hhcccCHHHHHHHHHHCCCEEEEEEeeCCceE-EEEEE
Confidence 12356899999999999999999888755443 34444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=168.78 Aligned_cols=196 Identities=21% Similarity=0.315 Sum_probs=134.7
Q ss_pred chhHHHHhhhhhhhhhhhhhhh--------------hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC
Q 025144 28 SSERQELFSRIAPVYDNLNDLL--------------SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 93 (257)
.+.++++||..++.|+...... .........+.+...+...++.+|||||||+|..+..+++..
T Consensus 6 ~~~~~~~Yd~~~~~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-- 83 (273)
T 3bus_A 6 PEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-- 83 (273)
T ss_dssp -----------------CCGGGCCCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--
T ss_pred HHHHHHHHcchHHHHHHHcCCCceEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--
Confidence 5567778887777776542211 011233444556666777888999999999999999999874
Q ss_pred CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCE
Q 025144 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 173 (257)
Q Consensus 94 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~ 173 (257)
+.+++++|+|+.+++.++++....+.. .++.+..+|+.++++++++||+|++..+++|++++..++++++++|||||.
T Consensus 84 ~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 161 (273)
T 3bus_A 84 DVRVTGISISRPQVNQANARATAAGLA--NRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGT 161 (273)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeE
Confidence 579999999999999999987654432 479999999999888888999999999999999999999999999999999
Q ss_pred EEEEeecCCCchh--HHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 174 ISVLDFNKSTQPF--TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 174 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+++.++....... .......+... .....+++.+++.++++++||++++.....
T Consensus 162 l~i~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 162 VAIADFVLLAPVEGAKKEAVDAFRAG-------------------GGVLSLGGIDEYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHHH-------------------HTCCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred EEEEEeeccCCCChhHHHHHHHHHhh-------------------cCccCCCCHHHHHHHHHHcCCeEEEEEECc
Confidence 9998876433211 11111111000 011246789999999999999999877654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=170.69 Aligned_cols=187 Identities=14% Similarity=0.091 Sum_probs=142.0
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
++.++++|+..+..|+........ ....+...+..+.... +.+|||+|||+|.++..+++. +.+++++|+|+.++
T Consensus 2 ~~~~~~~y~~~a~~y~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~ 76 (203)
T 3h2b_A 2 TDDVSKAYSSPTFDAEALLGTVIS-AEDPDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLV 76 (203)
T ss_dssp CCHHHHHHHCTTTCHHHHTCSSCC-TTCTTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhhhhcc-ccHHHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHH
Confidence 467899999999999776432211 1112223333333222 679999999999999999876 46999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+.++++. +++.++++|+.++++++++||+|++..+++|++ ++..++++++++|||||.+++.++......
T Consensus 77 ~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 148 (203)
T 3h2b_A 77 ELARQTH--------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE 148 (203)
T ss_dssp HHHHHHC--------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE
T ss_pred HHHHHhC--------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh
Confidence 9999874 689999999999887789999999999999996 899999999999999999999887654411
Q ss_pred hHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEE
Q 025144 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 253 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~ 253 (257)
... ... ....+++.+++.++|+++||++++...........+
T Consensus 149 ~~~---------------~~~-----------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l 190 (203)
T 3h2b_A 149 PMY---------------HPV-----------ATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYL 190 (203)
T ss_dssp EEC---------------CSS-----------SCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEE
T ss_pred hhh---------------chh-----------hhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhh
Confidence 000 000 011356899999999999999999887765433333
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=169.83 Aligned_cols=195 Identities=18% Similarity=0.134 Sum_probs=144.3
Q ss_pred chhHHHHhhhh--hhhhhhhhh-------hh--------hhhhHHHHHHHHHhhh----CCCCCCeEEEecCCCChhHHH
Q 025144 28 SSERQELFSRI--APVYDNLND-------LL--------SFGQHRIWKRMAVSWS----GAKTGDNVLDVCCGSGDLSFL 86 (257)
Q Consensus 28 ~~~~~~~y~~~--a~~y~~~~~-------~~--------~~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~ 86 (257)
.+.++++||.. .+.|+.... .. .........+.+...+ ...++.+|||+|||+|..+..
T Consensus 20 ~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~ 99 (297)
T 2o57_A 20 KDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARF 99 (297)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHH
T ss_pred HHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHH
Confidence 45678888876 366654321 00 0011233334455555 778889999999999999999
Q ss_pred HHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHh
Q 025144 87 LSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFR 166 (257)
Q Consensus 87 l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~ 166 (257)
+++.+ +.+++++|+|+.+++.++++....+.. .++.++.+|+.++++++++||+|++..+++|++++..+++++++
T Consensus 100 l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~ 175 (297)
T 2o57_A 100 LVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLA--DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECAR 175 (297)
T ss_dssp HHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCT--TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred HHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHH
Confidence 99885 469999999999999999987655432 57999999999988888999999999999999999999999999
Q ss_pred cccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 167 VLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 167 ~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+|||||.+++.++.............+.... ....+.+..++.++++++||++++.....
T Consensus 176 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 176 VLKPRGVMAITDPMKEDGIDKSSIQPILDRI--------------------KLHDMGSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HEEEEEEEEEEEEEECTTCCGGGGHHHHHHH--------------------TCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred HcCCCeEEEEEEeccCCCCchHHHHHHHHHh--------------------cCCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence 9999999999887654322111111111100 00124588999999999999999887653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=167.55 Aligned_cols=188 Identities=21% Similarity=0.287 Sum_probs=126.9
Q ss_pred CchhHHHHhhhhhhhhhhhhhh-hhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChh
Q 025144 27 CSSERQELFSRIAPVYDNLNDL-LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 105 (257)
..+..+++|+..+..|+..... ........+...+...+ .++.+|||+|||+|..+..+++. +.+++++|+|+.
T Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~ 86 (242)
T 3l8d_A 12 WHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEV 86 (242)
T ss_dssp --------------------CHHHHTSTTTTHHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHH
T ss_pred hHHHHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHH
Confidence 3566888999998888875332 11122233344444443 46789999999999999999886 569999999999
Q ss_pred HHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 106 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+++.++++... .++.++++|+.++++++++||+|++..+++|++++..++++++++|+|||.+++.++......
T Consensus 87 ~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 160 (242)
T 3l8d_A 87 MIQKGKERGEG------PDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKP 160 (242)
T ss_dssp HHHHHHTTTCB------TTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGG
T ss_pred HHHHHHhhccc------CCceEEEcchhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchh
Confidence 99999987521 689999999999888889999999999999999999999999999999999999887654433
Q ss_pred hHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.......... . ......++.+++.++++++||++++....
T Consensus 161 ~~~~~~~~~~------------~--------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 161 RENSYPRLYG------------K--------DVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp GGGGGGGGGT------------C--------CCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhhhhhcc------------c--------cccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 2111110000 0 00123578899999999999999987754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=166.25 Aligned_cols=185 Identities=19% Similarity=0.264 Sum_probs=137.9
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 35 y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
++..+..|+....... ........++..+. ..++.+|||||||+|..+..+++. +..+|+++|+|+.+++.++++
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~ 88 (267)
T 3kkz_A 13 LNLICDFFSNMERQGP--GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRN 88 (267)
T ss_dssp HHHHHHHHHTSSCSSS--CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCC--CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHH
Confidence 3446666666543221 12222333444443 678889999999999999999987 466999999999999999998
Q ss_pred hhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHH
Q 025144 114 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193 (257)
Q Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 193 (257)
.+..+.. +++.++++|+.++++++++||+|++..+++++ ++..+++++.++|||||.+++.+...............
T Consensus 89 ~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 165 (267)
T 3kkz_A 89 ARQSGLQ--NRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDF 165 (267)
T ss_dssp HHHTTCT--TTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHH
T ss_pred HHHcCCC--cCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHH
Confidence 8665432 57999999999988888999999999999999 89999999999999999999988764332222222222
Q ss_pred HHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecC
Q 025144 194 MIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
+.. ....+.+.+++.++++++||++++...+..
T Consensus 166 ~~~---------------------~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 166 WMD---------------------AYPEIDTIPNQVAKIHKAGYLPVATFILPE 198 (267)
T ss_dssp HHH---------------------HCTTCEEHHHHHHHHHHTTEEEEEEEECCG
T ss_pred HHH---------------------hCCCCCCHHHHHHHHHHCCCEEEEEEECCH
Confidence 210 111355889999999999999998877653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=159.64 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=136.6
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.+...++|+..+..|+........ ......+..+....++.+|||+|||+|.++..+++. +.+++++|+|+.++
T Consensus 8 ~~~~~~~~~~~a~~y~~~~~~~~~---~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~ 81 (218)
T 3ou2_A 8 IESQLSYYRARASEYDATFVPYMD---SAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMI 81 (218)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHT---TTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHH
Confidence 466788999999999885432211 112222222334677789999999999999999987 56999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+.+++. + ..++.++++|+.++ +++++||+|++..+++++++. ..++++++++|||||.+++.+++.+...
T Consensus 82 ~~a~~~----~---~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 153 (218)
T 3ou2_A 82 AEAGRH----G---LDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR 153 (218)
T ss_dssp HHHGGG----C---CTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--
T ss_pred HHHHhc----C---CCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc
Confidence 999882 1 15899999999987 677899999999999999875 8899999999999999999988875433
Q ss_pred hHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
........... ...........|. ....+++.+++.++++++||++.......
T Consensus 154 ~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 154 LEQQDDSEPEV----AVRRTLQDGRSFR----IVKVFRSPAELTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp ----------C----EEEEECTTSCEEE----EECCCCCHHHHHHHHHHTTEEEEEEEEET
T ss_pred cchhhhccccc----ceeeecCCcchhh----HhhcCCCHHHHHHHHHHCCCEEEeeeccc
Confidence 22211111110 0000000000010 11235699999999999999966555443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=165.83 Aligned_cols=163 Identities=22% Similarity=0.328 Sum_probs=127.6
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++....+. +++.++.+|+.++++++
T Consensus 28 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 28 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCC-CCCSCT
T ss_pred HHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEecHHhCCCCC
Confidence 34445566788899999999999999998773 4999999999999999988765432 47999999999988888
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
++||+|++..+++|++++..++++++++|||||.+++.+...+..+....+...... . . . ...
T Consensus 102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~--~--~------------~~~ 164 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEK-E--R--D------------YSH 164 (260)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHH-H--H--C------------TTC
T ss_pred CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHH-h--c--C------------ccc
Confidence 999999999999999999999999999999999999988776555433222211110 0 0 0 001
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeee
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+.++.+++.++|+++||+++....+
T Consensus 165 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 165 HRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 24568899999999999998877665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-23 Score=162.01 Aligned_cols=162 Identities=20% Similarity=0.320 Sum_probs=127.7
Q ss_pred HHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 61 AVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 61 ~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
++..+ ...++.+|||+|||+|..+..+++.. + .+|+++|+|+.+++.++++....+.. .++.++++|+.++++++
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCA--DRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCSSCT
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChhhCCCCC
Confidence 34443 66778899999999999999999984 3 49999999999999999988765432 46999999999988888
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
++||+|++..+++++ ++..+++++.++|||||.+++.+...............+.. ..
T Consensus 113 ~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 170 (257)
T 3f4k_A 113 EELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD---------------------AY 170 (257)
T ss_dssp TCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH---------------------HC
T ss_pred CCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH---------------------hC
Confidence 999999999999999 78999999999999999999988653332222222222111 11
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeecCc
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
..+.+.+++.++++++||++++.......
T Consensus 171 ~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 199 (257)
T 3f4k_A 171 PEISVIPTCIDKMERAGYTPTAHFILPEN 199 (257)
T ss_dssp TTCCBHHHHHHHHHHTTEEEEEEEECCGG
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEEECChh
Confidence 23568899999999999999998766543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=161.00 Aligned_cols=166 Identities=23% Similarity=0.289 Sum_probs=132.0
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+...++.+|||+|||+|..+..+++. ..+++++|+|+.+++.++++....+. +++.++++|+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLP 82 (239)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCC
T ss_pred CcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEecccccCC
Confidence 3455666778889999999999999999999876 35999999999999999998765432 47999999999988
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
+++++||+|++..+++|++++..++++++++|||||.+++.+...+.......+...... ...
T Consensus 83 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~-------------- 145 (239)
T 1xxl_A 83 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNR---LRD-------------- 145 (239)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHH---HHC--------------
T ss_pred CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHH---hcc--------------
Confidence 888999999999999999999999999999999999999988776655433222221110 000
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
....+.++.+++.++|+++||+++....+
T Consensus 146 ~~~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 146 PSHVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp TTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 00124568899999999999998887765
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=162.44 Aligned_cols=162 Identities=19% Similarity=0.297 Sum_probs=131.9
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
..+.+...+...++.+|||+|||+|..+..+++.+ +.+|+++|+|+.+++.++++.... .++.++++|+.+++
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~ 115 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTKE 115 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTCC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccCC
Confidence 34556666677888999999999999999999985 579999999999999999887543 48999999999988
Q ss_pred CCCCcccEEEecccccCc--ccHHHHHHHHHhcccCCCEEEEEeecCCCc-hhHHHHHHHHHhhhhhhhhccCCchhhhh
Q 025144 137 FSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQ-PFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
+++++||+|++..+++|+ +++..++++++++|||||.+++.++..+.. .....+.....
T Consensus 116 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~------------------ 177 (266)
T 3ujc_A 116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVK------------------ 177 (266)
T ss_dssp CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHH------------------
T ss_pred CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHh------------------
Confidence 888999999999999999 889999999999999999999998766552 22222211111
Q ss_pred hhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 214 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.....+++.+++.++++++||++++.....
T Consensus 178 ---~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 178 ---QRKYTLITVEEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp ---HHTCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred ---cCCCCCCCHHHHHHHHHHcCCeEEEEEeCC
Confidence 111246799999999999999999877654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=167.02 Aligned_cols=203 Identities=18% Similarity=0.156 Sum_probs=132.3
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhh--hhHHHHHHH---HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCC
Q 025144 29 SERQELFSRIAPVYDNLNDLLSF--GQHRIWKRM---AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s 103 (257)
....+.|+..+..|+........ .......+. ++..+.. ++.+|||||||+|..+..+++. +.+++++|+|
T Consensus 24 ~~~~~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s 99 (285)
T 4htf_A 24 AMQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLS 99 (285)
T ss_dssp --------CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESC
T ss_pred cccccchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECC
Confidence 34556888888888765321111 111111111 2222332 3579999999999999999876 5799999999
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+.+++.+++++...+.. .++.++++|+.+++ +++++||+|++..++++++++..+++++.++|||||.+++.+++..
T Consensus 100 ~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 100 AQMIDRAKQAAEAKGVS--DNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp HHHHHHHHHHHHC-CCG--GGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred HHHHHHHHHHHHhcCCC--cceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 99999999988654432 57999999999876 6678999999999999999999999999999999999999876643
Q ss_pred CchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 183 TQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...........+. .......... ........+++.+++.++|+++||++++....
T Consensus 178 ~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 178 GLLMHNMVAGNFD-----YVQAGMPKKK---KRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp HHHHHHHHTTCHH-----HHHTTCCCC-------CCCSCCBCHHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHhcCHH-----HHhhhccccc---cccCCCCCCCCHHHHHHHHHHCCCceeeeeeE
Confidence 2211111100000 0000000000 00001124679999999999999999987765
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-22 Score=160.66 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=143.3
Q ss_pred CchhHHHHhhhhhhhhhhhhhhh--------h------hhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC
Q 025144 27 CSSERQELFSRIAPVYDNLNDLL--------S------FGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~ 92 (257)
..+.+...||...+.|+...... . ...+......+...+...++.+|||||||+|..+..+++.+
T Consensus 16 ~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~- 94 (302)
T 3hem_A 16 PVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY- 94 (302)
T ss_dssp CHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-
T ss_pred hHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhC-
Confidence 35777888887777776553310 0 00122223445555677888999999999999999999986
Q ss_pred CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccH---------HHHHHH
Q 025144 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK---------RKALEE 163 (257)
Q Consensus 93 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------~~~l~~ 163 (257)
+.+|+++|+|+.+++.++++....+.. .++.+..+|+.++ +++||+|++..+++|++++ ..++++
T Consensus 95 -~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~ 168 (302)
T 3hem_A 95 -DVNVIGLTLSENQYAHDKAMFDEVDSP--RRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKK 168 (302)
T ss_dssp -CCEEEEEECCHHHHHHHHHHHHHSCCS--SCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHH
T ss_pred -CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHH
Confidence 379999999999999999998664432 4799999999876 6889999999999999665 799999
Q ss_pred HHhcccCCCEEEEEeecCCCchhHHHH-----------HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHH
Q 025144 164 SFRVLKPGSRISVLDFNKSTQPFTTAI-----------QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 232 (257)
Q Consensus 164 ~~~~Lk~gG~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (257)
+.++|||||.+++.++..+........ ..+.... ..+ ...+.+.+++.+++
T Consensus 169 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-----------------~~~~~s~~~~~~~l 230 (302)
T 3hem_A 169 FYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE-IFP-----------------GGRLPRISQVDYYS 230 (302)
T ss_dssp HHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH-TCT-----------------TCCCCCHHHHHHHH
T ss_pred HHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHh-cCC-----------------CCCCCCHHHHHHHH
Confidence 999999999999988876554321110 0111100 000 01356889999999
Q ss_pred HHcCceeeEEeeecC
Q 025144 233 LEIGFSRAKHYELSG 247 (257)
Q Consensus 233 ~~~Gf~~~~~~~~~~ 247 (257)
+++||++++...+..
T Consensus 231 ~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 231 SNAGWKVERYHRIGA 245 (302)
T ss_dssp HHHTCEEEEEEECGG
T ss_pred HhCCcEEEEEEeCch
Confidence 999999998876643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=160.63 Aligned_cols=164 Identities=19% Similarity=0.106 Sum_probs=128.8
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|..+..+++.+ +.+++++|+|+.+++.++++.+..+.. .++.++++|+.++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVS--ERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCCTTC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEECChHhC
Confidence 344556666778889999999999999999999885 568999999999999999988654432 4799999999998
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
++ +++||+|++..++++++++..++++++++|||||.+++.+...............+. .
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--------~----------- 158 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG--------V----------- 158 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTT--------C-----------
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHh--------c-----------
Confidence 76 789999999999999999999999999999999999998765433222111111000 0
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
.....+++..++.++|+++||++++...
T Consensus 159 -~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 159 -SSTSDFLTLPGLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp -SCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred -ccccccCCHHHHHHHHHHCCCeeEEEEe
Confidence 0012467899999999999999887654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=164.29 Aligned_cols=212 Identities=18% Similarity=0.178 Sum_probs=134.6
Q ss_pred HHHHhh-hhhhhhhhhhhhhhh---hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 31 RQELFS-RIAPVYDNLNDLLSF---GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 31 ~~~~y~-~~a~~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
..++|+ ..+..|+........ .....+.+.+... .+++.+|||+|||+|.++..+++. +.+++++|+|+.+
T Consensus 10 ~~~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~ 84 (263)
T 3pfg_A 10 PQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRH--SPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADM 84 (263)
T ss_dssp CBCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--CTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHH
T ss_pred cccccchhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--CCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHH
Confidence 344666 677777766532111 1112222222222 345679999999999999999876 4689999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc-cccCcc---cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY-GLRNVV---DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
++.++++. .++.++++|+.++++ +++||+|++.. ++++++ +...++++++++|||||.+++.++..+
T Consensus 85 ~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 155 (263)
T 3pfg_A 85 LAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFP 155 (263)
T ss_dssp HHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred HHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccCh
Confidence 99999886 589999999999876 68899999998 999995 567889999999999999988654433
Q ss_pred CchhHHHHHHH-----------HH----hhhhhhhhccCC---chhhhh-hhHHHHhccCCHHHHHHHHHHcCceeeEEe
Q 025144 183 TQPFTTAIQEW-----------MI----DNVVVPVASGYG---LAEEYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 183 ~~~~~~~~~~~-----------~~----~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
........... .. ..........+. ....+. .......++++.+++.++|+++||+++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 235 (263)
T 3pfg_A 156 ENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMP 235 (263)
T ss_dssp TTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred hhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEee
Confidence 31100000000 00 000000000000 000000 000011346799999999999999999886
Q ss_pred eecCceeEEEeeeC
Q 025144 244 ELSGGLMGNLVATR 257 (257)
Q Consensus 244 ~~~~g~~~~~~~~k 257 (257)
.... ...+++++|
T Consensus 236 ~~~~-~~~~~va~K 248 (263)
T 3pfg_A 236 GGPS-GRGLFTGLP 248 (263)
T ss_dssp STTT-SSCEEEEEE
T ss_pred CCCC-CceeEEEec
Confidence 6543 445566654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-23 Score=170.14 Aligned_cols=200 Identities=22% Similarity=0.305 Sum_probs=126.2
Q ss_pred CCchhHHHHhhhhhhhhhhhhh-------hhhhhhHHHHHH---HHHhhhC----------CCCCCeEEEecCCCChhHH
Q 025144 26 RCSSERQELFSRIAPVYDNLND-------LLSFGQHRIWKR---MAVSWSG----------AKTGDNVLDVCCGSGDLSF 85 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~-------~~~~~~~~~~~~---~~~~~~~----------~~~~~~vLdiG~G~G~~~~ 85 (257)
+..+.++++|+..+..|+.... .......+.+.. .+...+. ..++.+|||+|||+|..+.
T Consensus 20 ~~~~~v~~~Y~~~~~~~~~~~~~~~~~~~~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G~~~~ 99 (383)
T 4fsd_A 20 SIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVY 99 (383)
T ss_dssp ------------------------------CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTSHHHH
T ss_pred HHHHHHHHHHHHHhcchhhcccccccCCCCCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccCHHHH
Confidence 4467788999888877755411 000111222211 1222111 4567899999999999999
Q ss_pred HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-----ccCCCeeEEEccCCCC------CCCCCcccEEEecccccCc
Q 025144 86 LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-----ACYKNIEWVEGDALDL------PFSDCFFDAITMGYGLRNV 154 (257)
Q Consensus 86 ~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~ 154 (257)
.+++.++++.+|+++|+|+.+++.++++++.... ...+++.++++|+.++ ++++++||+|+++.+++++
T Consensus 100 ~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~ 179 (383)
T 4fsd_A 100 LASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS 179 (383)
T ss_dssp HHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGC
T ss_pred HHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcC
Confidence 9999876778999999999999999998754311 1115899999999987 7788899999999999999
Q ss_pred ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHH
Q 025144 155 VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE 234 (257)
Q Consensus 155 ~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (257)
+++..++++++++|||||.+++.++................ ........++.+++.++|++
T Consensus 180 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 180 TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL-------------------YGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHH-------------------HHTTCTTCCBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHH-------------------hhcccccCCCHHHHHHHHHH
Confidence 99999999999999999999998766543221111100000 00011235678999999999
Q ss_pred cCceeeEEee
Q 025144 235 IGFSRAKHYE 244 (257)
Q Consensus 235 ~Gf~~~~~~~ 244 (257)
+||++++...
T Consensus 241 aGF~~v~~~~ 250 (383)
T 4fsd_A 241 AGFRDVRLVS 250 (383)
T ss_dssp TTCCCEEEEE
T ss_pred CCCceEEEEe
Confidence 9998776544
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-23 Score=160.95 Aligned_cols=190 Identities=17% Similarity=0.137 Sum_probs=122.0
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 31 RQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 31 ~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
..++|+..+..|+...... ...+.+.+. +.+..++.+|||||||+|.++..+++. +.+++++|+|+.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---l~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a 80 (250)
T 2p7i_A 9 DQEIKDTAGHKYAYNFDFD--VMHPFMVRA---FTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHA 80 (250)
T ss_dssp --------------CHHHH--THHHHHHHH---HGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHH
T ss_pred CHHHHhhHHHHhcCccchh--hHHHHHHHH---HHhhcCCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHH
Confidence 3578888777775532211 111222222 223346779999999999999999876 34899999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHH-hcccCCCEEEEEeecCCCchhHHH
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF-RVLKPGSRISVLDFNKSTQPFTTA 189 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~-~~Lk~gG~l~~~~~~~~~~~~~~~ 189 (257)
+++.. .++.++++|+.++ .++++||+|++.++++|++++..++++++ ++|||||.+++.+++........
T Consensus 81 ~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~- 151 (250)
T 2p7i_A 81 QGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI- 151 (250)
T ss_dssp HHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHH-
T ss_pred HHhhh-------CCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHH-
Confidence 98863 2789999999887 46789999999999999999999999999 99999999999887654422111
Q ss_pred HHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 190 IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
... ...... ...... . .......+.++.+++.++|+++||++++....
T Consensus 152 --~~~-~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 152 --AVK-MGIISH---NSAVTE-A-EFAHGHRCTYALDTLERDASRAGLQVTYRSGI 199 (250)
T ss_dssp --HHH-TTSSSS---TTCCCH-H-HHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred --HHH-cCcccc---chhccc-c-cccccccccCCHHHHHHHHHHCCCeEEEEeee
Confidence 000 000000 000000 0 00111234679999999999999999987654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=159.94 Aligned_cols=137 Identities=21% Similarity=0.233 Sum_probs=109.5
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
.|+.++..|+..... ......+.+.+...+.. .++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++
T Consensus 2 ~y~~~a~~yd~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~ 76 (246)
T 1y8c_A 2 CYNKFAHIYDKLIRA--DVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAE 76 (246)
T ss_dssp CHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHH
T ss_pred hHHHHHHHHHHHccc--cccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHH
Confidence 588888888876541 11234445555555433 36789999999999999999876 468999999999999999
Q ss_pred hhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc-cccCc---ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 112 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY-GLRNV---VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++....+ .++.++++|+.+++++ ++||+|++.. +++|+ +++..++++++++|||||.+++...+
T Consensus 77 ~~~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 77 NKFRSQG----LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp HHHHHTT----CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred HHHhhcC----CCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9875432 3789999999988766 8899999998 99999 67889999999999999999875543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=161.82 Aligned_cols=163 Identities=16% Similarity=0.169 Sum_probs=128.5
Q ss_pred HHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
+.+...+. ..++.+|||+|||+|.++..+++.+ +.+|+++|+|+.+++.++++....+.. .++.++.+|+.++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~ 181 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRID--DHVRSRVCNMLDTPF 181 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCCC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CceEEEECChhcCCC
Confidence 33455555 7788899999999999999999885 579999999999999999988765432 479999999999888
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCch-hHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
++++||+|++..+++++ ++..+++++.++|||||.+++.++...... ............
T Consensus 182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~------------------- 241 (312)
T 3vc1_A 182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAH------------------- 241 (312)
T ss_dssp CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHH-------------------
T ss_pred CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhh-------------------
Confidence 88999999999999999 599999999999999999999886654422 111111111100
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
....+++.+++.++++++||++++...+.
T Consensus 242 -~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 242 -FECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp -HTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred -hcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 01135689999999999999999887753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=166.84 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=131.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++.+|||||||+|..+..++....++.+|+++|+|+.+++.++++....+.. .++.++++|+.+++++ ++||+|
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~v 191 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA--GQITLHRQDAWKLDTR-EGYDLL 191 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG--GGEEEEECCGGGCCCC-SCEEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECchhcCCcc-CCeEEE
Confidence 3567889999999999999998522246789999999999999999998655432 4699999999998876 899999
Q ss_pred EecccccCcccHHH---HHHHHHhcccCCCEEEEEeecCCCchhHHH------H--HHHHHhhhhhhhhccCCchhhhhh
Q 025144 146 TMGYGLRNVVDKRK---ALEESFRVLKPGSRISVLDFNKSTQPFTTA------I--QEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 146 ~~~~~l~~~~~~~~---~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
++..++++++++.. ++++++++|||||.+++.++..+....... . ..........+ ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-----------~~ 260 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFT-----------RL 260 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHH-----------HT
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHH-----------HH
Confidence 99999999987665 799999999999999998866533211000 0 00000000000 00
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.......+++.+++.++|+++||++++......+.+..++++|
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 261 IQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp TCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 0001124579999999999999999999987777788888876
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=157.68 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=122.9
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||+|||+|..+..+++.+ ++.+++++|+|+.+++.++++. +++.++.+|+.+++ ++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATWK-PA 93 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS--------TTSEEEECCTTTCC-CS
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------CCcEEEECChhhcC-cc
Confidence 45555666778899999999999999999986 6789999999999999998873 68999999999887 67
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
++||+|++..++++++++..++++++++|||||.+++.++..........+........ +. ..........
T Consensus 94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~ 164 (259)
T 2p35_A 94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGP---WK------DAFSGGGLRR 164 (259)
T ss_dssp SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHST---TG------GGC-------
T ss_pred CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcc---hH------HHhccccccc
Confidence 89999999999999999999999999999999999998866544332222222221100 00 0000000123
Q ss_pred hccCCHHHHHHHHHHcCceee
Q 025144 220 REFLTGKDLEKLALEIGFSRA 240 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~ 240 (257)
..+++.+++.++|+++||++.
T Consensus 165 ~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 165 KPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp CCCCCHHHHHHHHGGGEEEEE
T ss_pred cCCCCHHHHHHHHHhcCCceE
Confidence 457799999999999999754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=158.66 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=99.8
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...++.+|||+|||+|..+..+++. ++ .+++++|+|+.+++.++++... .++.++++|+.+++++
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~ 105 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GA-KKVLGIDLSERMLTEAKRKTTS------PVVCYEQKAIEDIAIE 105 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHCCC------TTEEEEECCGGGCCCC
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhhcc------CCeEEEEcchhhCCCC
Confidence 34555666667889999999999999999887 22 3999999999999999988751 6899999999998888
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++||+|++..++++++++..++++++++|||||.+++...+
T Consensus 106 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 106 PDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 899999999999999999999999999999999999887543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=157.22 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=139.5
Q ss_pred CchhHHHHhhhhhhhhhhhhhhh-----------hh---hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC
Q 025144 27 CSSERQELFSRIAPVYDNLNDLL-----------SF---GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~ 92 (257)
..+.++..||...+.|+.+.+.. .. ..+....+.+...+...++.+|||||||+|..+..+++..
T Consensus 8 ~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~- 86 (287)
T 1kpg_A 8 HFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY- 86 (287)
T ss_dssp CHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-
T ss_pred cHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-
Confidence 35677888886665555432110 00 1122233445555667788899999999999999999775
Q ss_pred CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc--ccHHHHHHHHHhcccC
Q 025144 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKP 170 (257)
Q Consensus 93 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~ 170 (257)
+.+|+++|+|+.+++.++++....+.. .++.+..+|+.+++ ++||+|++..+++|+ +++..++++++++|||
T Consensus 87 -~~~v~gvd~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 160 (287)
T 1kpg_A 87 -DVNVVGLTLSKNQANHVQQLVANSENL--RSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA 160 (287)
T ss_dssp -CCEEEEEESCHHHHHHHHHHHHTCCCC--SCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT
T ss_pred -CCEEEEEECCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCC
Confidence 459999999999999999987654332 58999999998764 789999999999999 6789999999999999
Q ss_pred CCEEEEEeecCCCchhH-----------HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCcee
Q 025144 171 GSRISVLDFNKSTQPFT-----------TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSR 239 (257)
Q Consensus 171 gG~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 239 (257)
||.+++.++........ .....+.... .. ....+.+.+++.++++++||++
T Consensus 161 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~s~~~~~~~l~~aGf~~ 222 (287)
T 1kpg_A 161 DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IF-----------------PGGRLPSIPMVQECASANGFTV 222 (287)
T ss_dssp TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TS-----------------TTCCCCCHHHHHHHHHTTTCEE
T ss_pred CCEEEEEEecCCCccccccccccccccccchhhhHHhe-eC-----------------CCCCCCCHHHHHHHHHhCCcEE
Confidence 99999988776543210 0111111100 00 0013558999999999999999
Q ss_pred eEEeee
Q 025144 240 AKHYEL 245 (257)
Q Consensus 240 ~~~~~~ 245 (257)
++....
T Consensus 223 ~~~~~~ 228 (287)
T 1kpg_A 223 TRVQSL 228 (287)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988765
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=161.49 Aligned_cols=172 Identities=16% Similarity=0.223 Sum_probs=127.1
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
+|+..+..|+..... ...+.+.+...+...++.+|||+|||+|.++..+++ ++.+|+++|+|+.+++.++++
T Consensus 4 ~y~~~a~~y~~~~~~-----~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~ 75 (261)
T 3ege_A 4 IYNSIGKQYSQTRVP-----DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVH 75 (261)
T ss_dssp ---------CCSBCC-----CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCC
T ss_pred HHHHHHHHHhhcccc-----cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc
Confidence 688888888876532 234566677777778889999999999999999986 468999999999999887765
Q ss_pred hhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCch--hH-HHH
Q 025144 114 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP--FT-TAI 190 (257)
Q Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~-~~~ 190 (257)
.++.++++|+.++++++++||+|++.++++|++++..++++++++|| ||.+++.++...... .. ..+
T Consensus 76 ---------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~ 145 (261)
T 3ege_A 76 ---------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYF 145 (261)
T ss_dssp ---------TTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTC
T ss_pred ---------cCCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHH
Confidence 38999999999988888999999999999999999999999999999 999888887542211 00 000
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
. .........+.+.+++. +|+++||++++...+
T Consensus 146 ~---------------------~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 146 P---------------------FLWEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp H---------------------HHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred H---------------------HHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 0 01112223466788899 999999998876654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=160.75 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=129.3
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.+.+.+.......++.+|||||||+|.++..+++. .|+.+++++|+|+.+++.++++....+. +++.++..|+.++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~ 99 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQANIFSL 99 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEcccccC
Confidence 34455555556678899999999999999999998 4678999999999999999998765443 4799999999998
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCch---hHHHHHHHHHhhhhhhhhccCCchhhh
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP---FTTAIQEWMIDNVVVPVASGYGLAEEY 212 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (257)
++++++||+|++..++++++++..++++++++|||||.+++.+....... .......++.. ..
T Consensus 100 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------- 165 (276)
T 3mgg_A 100 PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNC-LI------------- 165 (276)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHH-HH-------------
T ss_pred CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHH-HH-------------
Confidence 88889999999999999999999999999999999999999875532211 01111111110 00
Q ss_pred hhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
..........++..++.++|+++||++++....
T Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 166 RVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 000000112456789999999999999887754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=157.31 Aligned_cols=188 Identities=19% Similarity=0.207 Sum_probs=133.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHh-hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVS-WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 32 ~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
.+.|+..+..|+..... .......+...+.. .....++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+
T Consensus 2 ~~~~~~~a~~y~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a 77 (263)
T 2yqz_A 2 SSALLRAAYAYDRLRAH-PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVF 77 (263)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHH
T ss_pred CCchHHHHHHHhhhccc-ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHH
Confidence 35688888888876532 22222333333322 225567889999999999999999876 57999999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC-ch---h
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST-QP---F 186 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~-~~---~ 186 (257)
+++.... .+++.+..+|+.++++++++||+|++..++++++++..++++++++|||||.+++. +.... .. .
T Consensus 78 ~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~ 152 (263)
T 2yqz_A 78 RQKIAGV----DRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTL 152 (263)
T ss_dssp HHHTTTS----CTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHH
T ss_pred HHHhhcc----CCceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHH
Confidence 9887221 16899999999998888889999999999999999999999999999999999887 33321 11 1
Q ss_pred HHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEe
Q 025144 187 TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
...+..... ....+ ... ....++.+++.++|+++||+++...
T Consensus 153 ~~~~~~~~~-~~~~~------~~~--------~~~~~~~~~~~~~l~~~Gf~~~~~~ 194 (263)
T 2yqz_A 153 QERWRAFAA-EEGFP------VER--------GLHAKRLKEVEEALRRLGLKPRTRE 194 (263)
T ss_dssp HHHHHHHHH-HHTCC------CCC--------CHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHH-HhCCC------ccc--------ccccCCHHHHHHHHHHcCCCcceEE
Confidence 111111111 00000 000 0124467899999999999977654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=155.60 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=124.4
Q ss_pred HHhhh--hhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 33 ELFSR--IAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 33 ~~y~~--~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
+.|+. .+..|+.................+...+...++.+|||+|||+|..+..+++. + ..+++++|+|+.+++.+
T Consensus 5 ~~y~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a 82 (243)
T 3bkw_A 5 NIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARA 82 (243)
T ss_dssp --------------------CGGGCTTHHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHH
T ss_pred hhhcCHHHHHHHHHhccCCccHHHHHhHHHHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHH
Confidence 44555 56666665432221111112234556666678889999999999999999876 2 23999999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
+++... .++.+.++|+.++++++++||+|++..++++++++..++++++++|+|||.+++.+.+........
T Consensus 83 ~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-- 154 (243)
T 3bkw_A 83 RAAGPD------TGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPAR-- 154 (243)
T ss_dssp HHTSCS------SSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSS--
T ss_pred HHhccc------CCceEEEcChhhccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcC--
Confidence 988643 378999999998877788999999999999999999999999999999999988765421000000
Q ss_pred HHHHHhhh---hhhhhccCCc-hhhhhhhHHHH-hccCCHHHHHHHHHHcCceeeEEeee
Q 025144 191 QEWMIDNV---VVPVASGYGL-AEEYQYLKSSI-REFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 191 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
..|..... ..+....... .....+..... ...++.+++.++|+++||++++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 155 PGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred cceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00000000 0000000000 00001111111 12358999999999999999988765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=161.10 Aligned_cols=196 Identities=15% Similarity=0.108 Sum_probs=135.6
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhh-HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChh
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQ-HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 105 (257)
..+.+.++|+..+..|+.......... .......+...+...++.+|||+|||+|..+..+++. +.+++++|+|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~ 85 (227)
T 3e8s_A 9 PEDALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRT 85 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHH
T ss_pred HHHHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHH
Confidence 357789999999999987543322212 1123344444454556689999999999999999876 569999999999
Q ss_pred HHHHHHhhhhhhhhccCCCeeEEEccCCCC---CC-CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 106 QLSMASSRQDLVSKACYKNIEWVEGDALDL---PF-SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+++.++++ .++.+...|+.++ +. ++++||+|++..+++ .+++..++++++++|||||.+++.+++.
T Consensus 86 ~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 86 LVDAARAA---------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp HHHHHHHT---------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHHh---------cccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 99999887 3677888887765 33 345599999999999 8899999999999999999999988765
Q ss_pred CCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 182 STQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...........|.. ....+....+ ......+++.+++.++|+++||+++++.+.
T Consensus 156 ~~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 156 WSVADGDYQDGWRE-------ESFAGFAGDW---QPMPWYFRTLASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp TTTCTTCCSCEEEE-------ECCTTSSSCC---CCEEEEECCHHHHHHHHHHTTEEEEEEECC
T ss_pred cccCccccccccch-------hhhhccccCc---ccceEEEecHHHHHHHHHHcCCeEEEEecC
Confidence 33221100000000 0000000000 001123569999999999999999988763
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=154.94 Aligned_cols=171 Identities=17% Similarity=0.113 Sum_probs=133.4
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
..+...++|+..+..|+..... ...+...+ ..+.++.+|||+|||+|.++..+++. +.+++++|+|+.+
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~ 77 (211)
T 3e23_A 9 FDDDTLRFYRGNATAYAERQPR-----SATLTKFL---GELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPEL 77 (211)
T ss_dssp SCHHHHHHHHHSHHHHTTCCCC-----CHHHHHHH---TTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHH
T ss_pred ccHHHHHHHHHHHHHHhhccch-----hHHHHHHH---HhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHH
Confidence 3567889999999999887543 22222221 23456789999999999999999876 5699999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
++.++++. ++.+..+|+.+++ ++++||+|++..++++++ ++..++++++++|||||.+++........
T Consensus 78 ~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 147 (211)
T 3e23_A 78 AAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE 147 (211)
T ss_dssp HHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC
T ss_pred HHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc
Confidence 99999875 5678889998877 678999999999999997 78899999999999999998876544321
Q ss_pred hhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcC-ceeeEEeee
Q 025144 185 PFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYEL 245 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~ 245 (257)
.... .. ....+++.+++.++++++| |++++....
T Consensus 148 ~~~~-------------------~~--------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 148 GRDK-------------------LA--------RYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp EECT-------------------TS--------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred cccc-------------------cc--------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 1000 00 0013579999999999999 999987765
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-21 Score=159.05 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=134.2
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...+..+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++++...+.. +++++..+|+.+ +.+
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~-~~p 266 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLA--DRCEILPGDFFE-TIP 266 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTT-CCC
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcC--CceEEeccCCCC-CCC
Confidence 344455566778899999999999999999985 7789999999 99999999987654432 689999999984 455
Q ss_pred CCcccEEEecccccCcccHH--HHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 139 DCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
. .||+|++.+++|++++.. ++|++++++|+|||.+++.+...+...... ..+....+. .
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~d~~~~----------------~ 327 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS--TLFVDLLLL----------------V 327 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH--HHHHHHHHH----------------H
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc--hhHhhHHHH----------------h
Confidence 4 799999999999998765 799999999999999999987765543211 111110100 0
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++.++|+++|+++||++++++....+...++.++|
T Consensus 328 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 328 LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred hcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 01123568999999999999999999885566677777764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=159.71 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=122.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...++..+...++.+|||+|||+|..+..+++.. ..+++++|+|+.+++.++++.... .++.++++|+.+++
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCC
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCC
Confidence 33455555566678899999999999999998874 457999999999999999887542 47899999999888
Q ss_pred CCCCcccEEEecccccCc--ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 137 FSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
+++++||+|++..+++|+ +++..++++++++|||||.+++.+......... . . .
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~-----~---~--------- 209 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-------V-----D---K--------- 209 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-------E-----E---T---------
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce-------e-----c---c---------
Confidence 778899999999999999 458899999999999999999987543221100 0 0 0
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
......++.+++.++|+++||++++....
T Consensus 210 --~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 210 --EDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp --TTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred --cCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 00012458899999999999999987654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-22 Score=157.81 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=122.4
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||+|||+|.++..+++ ++.+|+++|+|+.|++.++++. +++.+..+|+.++++ +
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~ 115 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-D 115 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-S
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-C
Confidence 344556677888999999999999999987 3679999999999999998875 578999999999876 5
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCch-hHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
++||+|++..++++++++..++++++++|||||.+++..+...... ....+........ .. . ..+ ..
T Consensus 116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~-~~~----~~ 183 (279)
T 3ccf_A 116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLG-IH------N-PQA----LN 183 (279)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHT-CC------C-GGG----GC
T ss_pred CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcC-Cc------c-ccC----cC
Confidence 7899999999999999999999999999999999998876654321 1111111111100 00 0 000 00
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...+++.+++.++|+++||++++....
T Consensus 184 ~~~~~~~~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 184 PWYFPSIGEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp CCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence 013568999999999999999876654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=159.50 Aligned_cols=146 Identities=15% Similarity=0.094 Sum_probs=116.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|..+..+++.. ..+++++|+|+.+++.++++....+. .++.++.+|+.++++++++||+|++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK---RVRNYFCCGLQDFTPEPDSYDVIWI 152 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG---GEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC---ceEEEEEcChhhcCCCCCCEEEEEE
Confidence 357899999999999999988763 45999999999999999998765421 4789999999888877779999999
Q ss_pred cccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 148 GYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 148 ~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
..+++++++ ...+++++.++|||||.+++.+.......... .. ......+.
T Consensus 153 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~---------------~~~~~~~~ 205 (241)
T 2ex4_A 153 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD------------DV---------------DSSVCRDL 205 (241)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE------------TT---------------TTEEEEBH
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceec------------cc---------------CCcccCCH
Confidence 999999987 44899999999999999999886654311000 00 00113478
Q ss_pred HHHHHHHHHcCceeeEEeee
Q 025144 226 KDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+++.++++++||++++....
T Consensus 206 ~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 206 DVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp HHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHcCCeEEEeeec
Confidence 99999999999999988754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=149.13 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=108.7
Q ss_pred HHhhhhhhhhhhhhhhhhhhhH-HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHH
Q 025144 33 ELFSRIAPVYDNLNDLLSFGQH-RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMA 110 (257)
Q Consensus 33 ~~y~~~a~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a 110 (257)
++|+..+..|+.+......... ....+.+..... ++.+|||+|||+|..+..+ +. +++++|+|+.+++.+
T Consensus 1 ~~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l------~~~~v~~vD~s~~~~~~a 72 (211)
T 2gs9_A 1 DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLP--PGESLLEVGAGTGYWLRRL------PYPQKVGVEPSEAMLAVG 72 (211)
T ss_dssp CTTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCC--CCSEEEEETCTTCHHHHHC------CCSEEEEECCCHHHHHHH
T ss_pred CchhhHHHHHHHHhcccchhhhHHHHHHHHHHhcC--CCCeEEEECCCCCHhHHhC------CCCeEEEEeCCHHHHHHH
Confidence 3688888889887554222111 222333333332 7789999999999988776 24 899999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+++. .++.++++|+.++++++++||+|++..+++|++++..++++++++|||||.+++.+++...
T Consensus 73 ~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 73 RRRA--------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp HHHC--------TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred HHhC--------CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 9876 4789999999998888889999999999999999999999999999999999998877644
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=152.55 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=133.1
Q ss_pred HHhh-hhhhhhhhhhhhhhhh---hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 33 ELFS-RIAPVYDNLNDLLSFG---QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 33 ~~y~-~~a~~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
++|+ .++..|+......... ....+.+.+.... .++.+|||+|||+|..+..+++.. .+++++|+|+.+++
T Consensus 2 ~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~ 76 (239)
T 3bxo_A 2 HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLT 76 (239)
T ss_dssp --CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHH
T ss_pred ccccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHH
Confidence 5677 7778887765321111 1122223333333 567899999999999999999884 38999999999999
Q ss_pred HHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe-cccccCc---ccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 109 MASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM-GYGLRNV---VDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
.++++. +++.+.++|+.+++. +++||+|++ ..+++|+ ++...++++++++|||||.+++.++..+..
T Consensus 77 ~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 147 (239)
T 3bxo_A 77 HARKRL--------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147 (239)
T ss_dssp HHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTT
T ss_pred HHHHhC--------CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCccc
Confidence 999875 578999999998776 678999995 4588888 456889999999999999998876554332
Q ss_pred hhHHHHHHHHHh--h-hhhh------hhc-------cC-Cchh-hhh-hhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 185 PFTTAIQEWMID--N-VVVP------VAS-------GY-GLAE-EYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 185 ~~~~~~~~~~~~--~-~~~~------~~~-------~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
........+... . .... ... .. .... ... .......++++.++++++|+++||++......
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~ 227 (239)
T 3bxo_A 148 FADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGG 227 (239)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST
T ss_pred ccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcC
Confidence 100000000000 0 0000 000 00 0000 000 00001124679999999999999977665544
Q ss_pred cCceeEEEeeeC
Q 025144 246 SGGLMGNLVATR 257 (257)
Q Consensus 246 ~~g~~~~~~~~k 257 (257)
.+...+++|+|
T Consensus 228 -~~~~~~~va~K 238 (239)
T 3bxo_A 228 -PSGRGLFVGVP 238 (239)
T ss_dssp -TTSSCEEEEEE
T ss_pred -CCCceEEEEec
Confidence 44566777765
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=158.01 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=125.6
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...+...++.+|||+|||+|..+..+++.+ +.+|+++|+|+.+++.++++....+.. .++.+..+|+.+++
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~- 153 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTN--RSRQVLLQGWEDFA- 153 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCS--SCEEEEESCGGGCC-
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECChHHCC-
Confidence 3445555667788999999999999999999886 569999999999999999987654432 46999999998763
Q ss_pred CCCcccEEEecccccCc--ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH-----------HHHHHHHhhhhhhhhc
Q 025144 138 SDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT-----------AIQEWMIDNVVVPVAS 204 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 204 (257)
++||+|++..+++|+ +++..+++++.++|||||.+++.++......... ....+..... .
T Consensus 154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 226 (318)
T 2fk8_A 154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEI-F---- 226 (318)
T ss_dssp --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHT-S----
T ss_pred --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhc-C----
Confidence 789999999999999 6889999999999999999999988765532210 0001111000 0
Q ss_pred cCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
....+.+.+++.++++++||++++...+
T Consensus 227 -------------~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 227 -------------PGGRLPSTEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp -------------TTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred -------------CCCcCCCHHHHHHHHHhCCCEEEEEEec
Confidence 0013568999999999999999887665
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=157.90 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=127.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v 145 (257)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++++...+.. .++.++.+|+.+. +++ ++||+|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~p-~~~D~v 252 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGS--ERIHGHGANLLDRDVPFP-TGFDAV 252 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTG--GGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcc--cceEEEEccccccCCCCC-CCcCEE
Confidence 456799999999999999999985 7789999999 99999999987654432 5899999999885 355 789999
Q ss_pred EecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 146 TMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 146 ~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
++..++|++++. ..+|++++++|||||.+++.+...+..........+............ ...+.+
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 320 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMAN------------GNSKMF 320 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSC------------SSCCSC
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhC------------CCCccc
Confidence 999999999754 578999999999999999998776554332211111100000000000 001356
Q ss_pred CHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 224 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
+.+++.++|+++||+++++....+....++.++
T Consensus 321 t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~ 353 (363)
T 3dp7_A 321 HSDDLIRCIENAGLEVEEIQDNIGLGHSILQCR 353 (363)
T ss_dssp CHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEE
T ss_pred CHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEe
Confidence 899999999999999999887766556666554
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=155.07 Aligned_cols=175 Identities=14% Similarity=0.215 Sum_probs=128.9
Q ss_pred HHHhhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 60 MAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 60 ~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+...+.. .++.+|||+|||+|..+..+++.+ |+.+++++|++ .+++.+++++...+.. .++.+..+|+.+.++
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVA--SRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCG--GGEEEEESCTTTSCC
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCC--cceEEEecccccCCC
Confidence 34444555 677899999999999999999985 67899999999 9999999987654432 479999999988666
Q ss_pred CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 138 SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
++ .||+|++.+++|+++ +...++++++++|+|||.+++.+...+..........++...+....
T Consensus 230 ~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~------------- 295 (335)
T 2r3s_A 230 GN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATT------------- 295 (335)
T ss_dssp CS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHS-------------
T ss_pred CC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeC-------------
Confidence 54 499999999999995 45799999999999999999998776543211111111110000000
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEee
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 255 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~ 255 (257)
.....++.+++.++++++||+++++....+.. .++++
T Consensus 296 --~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-~~i~~ 332 (335)
T 2r3s_A 296 --PNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ-QQVIV 332 (335)
T ss_dssp --SSCCCCCHHHHHHHHHHTTCSEEEEECCTTSS-SEEEE
T ss_pred --CCCCcCCHHHHHHHHHHCCCCeeeEEECCCCc-eeEEE
Confidence 01245689999999999999999988775543 44444
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=155.95 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=130.9
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...+..+|+|||||+|..+..+++.+ |+.++++.|. |.+++.++++..... .++++++.+|+.+.+.
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~-- 242 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPL-- 242 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCC--
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCC--
Confidence 34444455667899999999999999999995 7889999997 889999988775433 2689999999987544
Q ss_pred CcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 140 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
..+|++++.+++|+++|. .++|++++++|+|||.+++.+...+...........+.-.++....+
T Consensus 243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g------------- 309 (353)
T 4a6d_A 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEG------------- 309 (353)
T ss_dssp CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSC-------------
T ss_pred CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC-------------
Confidence 358999999999999864 67899999999999999999876544322111112221111111111
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
..++.++|+++|+++||++++++.. ++...+++|+|
T Consensus 310 ---~ert~~e~~~ll~~AGf~~v~v~~~-~~~~~~i~ArK 345 (353)
T 4a6d_A 310 ---QERTPTHYHMLLSSAGFRDFQFKKT-GAIYDAILARK 345 (353)
T ss_dssp ---CCCCHHHHHHHHHHHTCEEEEEECC-SSSCEEEEEEC
T ss_pred ---cCCCHHHHHHHHHHCCCceEEEEEc-CCceEEEEEEe
Confidence 2458899999999999999998876 56678889987
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=146.70 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=121.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++. +++.+..+| .++++++||+
T Consensus 13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~--------~~v~~~~~d---~~~~~~~~D~ 78 (170)
T 3i9f_A 13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF--------DSVITLSDP---KEIPDNSVDF 78 (170)
T ss_dssp HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC--------TTSEEESSG---GGSCTTCEEE
T ss_pred cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC--------CCcEEEeCC---CCCCCCceEE
Confidence 345677899999999999999999773 49999999999999999883 689999999 4566789999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCC
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 224 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (257)
|++..++++++++..+++++.++|||||.+++.++......... .....++
T Consensus 79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------------------~~~~~~~ 129 (170)
T 3i9f_A 79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------------------PLSIRMD 129 (170)
T ss_dssp EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------------------CGGGCCC
T ss_pred EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------------------hHhhhcC
Confidence 99999999999999999999999999999999887754422110 0013568
Q ss_pred HHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 225 GKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 225 ~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
.+++.++++ ||++++........+.++..+
T Consensus 130 ~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 130 EKDYMGWFS--NFVVEKRFNPTPYHFGLVLKR 159 (170)
T ss_dssp HHHHHHHTT--TEEEEEEECSSTTEEEEEEEE
T ss_pred HHHHHHHHh--CcEEEEccCCCCceEEEEEec
Confidence 999999998 999999988876666655543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=153.25 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=128.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...+ .+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++++...+.. .++.++.+|+.+ +++
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAG--ERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHT--TSEEEEESCTTT-CCC
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCC--CcEEEecCCCCC-CCC
Confidence 33444445555 899999999999999999985 6789999999 99999999987654432 589999999987 554
Q ss_pred CCcccEEEecccccCcccHH--HHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 139 DCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
++||+|++.+++|++++.. .++++++++|+|||.+++.+...+..... .....+...+..
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~~~---------------- 293 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS-PMSVLWDVHLFM---------------- 293 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC-HHHHHHHHHHHH----------------
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-chhHHhhhHhHh----------------
Confidence 6799999999999997655 89999999999999999998765432110 111111100000
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++.++|.++++++||++++.+... +...++.++|
T Consensus 294 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 333 (334)
T 2ip2_A 294 ACAGRHRTTEEVVDLLGRGGFAVERIVDLP-METRMIVAAR 333 (334)
T ss_dssp HHSCCCCBHHHHHHHHHHTTEEEEEEEEET-TTEEEEEEEE
T ss_pred hCCCcCCCHHHHHHHHHHCCCceeEEEECC-CCCEEEEEEe
Confidence 001134589999999999999999988764 4466666654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=155.34 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=99.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.....++.+|||+|||+|.++..+++.++++.+|+++|+|+.+++.++++....+ .++.++++|+.+++++ ++||
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD 91 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIELN-DKYD 91 (284)
T ss_dssp TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCCS-SCEE
T ss_pred HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcCcC-CCee
Confidence 3466788899999999999999999886435799999999999999999876543 4899999999998774 6899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+|++..++++++++..++++++++|||||.+++.++.
T Consensus 92 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 92 IAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999999999999999999999999999999988766
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=156.84 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=97.5
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 32 ~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
++.|+..++.|+....... ..+.+.+.... ..+.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+
T Consensus 8 ~d~F~~~a~~Y~~~Rp~yp----~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~ 78 (257)
T 4hg2_A 8 KDHFTPVADAYRAFRPRYP----RALFRWLGEVA--PARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQAL 78 (257)
T ss_dssp ------------CCCCCCC----HHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCcH----HHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhh
Confidence 5668888888887643221 22333343333 34569999999999999999876 469999999999998876
Q ss_pred hhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 112 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+. +++.++++|++++++++++||+|++..++|++ ++..++++++++|||||.|++..+..+.
T Consensus 79 ~~---------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 79 RH---------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp CC---------TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred hc---------CCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 43 68999999999999999999999999999887 5788999999999999999988776543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=150.29 Aligned_cols=178 Identities=20% Similarity=0.258 Sum_probs=128.3
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChh------HHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN------QLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~------~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
....+...+...++.+|||||||+|..+..+++..++..+++++|+|+. +++.++++++..+.. +++.++.+
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~--~~v~~~~~ 108 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG--DRLTVHFN 108 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG--GGEEEECS
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC--CceEEEEC
Confidence 3445556667788899999999999999999998756689999999997 999999988654332 47999999
Q ss_pred c---CCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH--HHHHHHHHhhhhhhhhcc
Q 025144 131 D---ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT--TAIQEWMIDNVVVPVASG 205 (257)
Q Consensus 131 d---~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 205 (257)
| ...+++++++||+|++..+++|++++..+++.+.++++|||.+++.++..+..... ................ .
T Consensus 109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 187 (275)
T 3bkx_A 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIA-P 187 (275)
T ss_dssp CCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHS-C
T ss_pred ChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcc-c
Confidence 8 33445667899999999999999998888877777778899999998776543221 1111111110000000 0
Q ss_pred CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.. ......+++.+++.++++++||++++...+
T Consensus 188 ~~--------~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 188 SD--------VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CT--------TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cc--------cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 001123679999999999999999987765
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=154.98 Aligned_cols=164 Identities=18% Similarity=0.073 Sum_probs=125.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...+..+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++++...+.. .++++..+|+.+ +.+. +||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~p~-~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLS--GRAQVVVGSFFD-PLPA-GAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCCC-SCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcC--cCeEEecCCCCC-CCCC-CCcEE
Confidence 34456799999999999999999985 7789999999 99999999987654432 589999999973 4444 79999
Q ss_pred EecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 146 TMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 146 ~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
++.+++|++++. .+++++++++|+|||.+++.+...+.... ........ +.....+.+
T Consensus 240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~d~~~-------------------~~~~~~~~~ 299 (332)
T 3i53_A 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHA-GTGMDLRM-------------------LTYFGGKER 299 (332)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---C-CHHHHHHH-------------------HHHHSCCCC
T ss_pred EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCc-cHHHHHHH-------------------HhhCCCCCC
Confidence 999999999874 88999999999999999999876654311 00111000 001112356
Q ss_pred CHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 224 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
+.++|.++|+++||++++.+.... ..++.+++
T Consensus 300 t~~e~~~ll~~aGf~~~~~~~~~~--~~vie~r~ 331 (332)
T 3i53_A 300 SLAELGELAAQAGLAVRAAHPISY--VSIVEMTA 331 (332)
T ss_dssp CHHHHHHHHHHTTEEEEEEEECSS--SEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEEECCC--cEEEEEee
Confidence 899999999999999999987754 66666653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=157.67 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=128.7
Q ss_pred HhhhCCCC-CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCC
Q 025144 62 VSWSGAKT-GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSD 139 (257)
Q Consensus 62 ~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 139 (257)
...+...+ +.+|||||||+|..+..+++.+ |+.+++++|+ +.+++.++++....+.. .++.++.+|+.+.+ +.+
T Consensus 171 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 171 VSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLG--GRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCG--GGEEEEECCTTCGGGGTT
T ss_pred HHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCC--CceEEEeCCcccCcccCC
Confidence 33344445 7899999999999999999985 6789999999 88999999887654432 57999999998865 134
Q ss_pred CcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 140 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
+.||+|++.+++|++++. ..++++++++|+|||.+++.+...+..........++...+....
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~--------------- 311 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNT--------------- 311 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHS---------------
T ss_pred CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhC---------------
Confidence 669999999999999764 889999999999999999998776553221111111111110000
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....++.++|+++|+++||++++.. .|.+.+++++|
T Consensus 312 ~~~~~~t~~e~~~ll~~aGf~~~~~~---~g~~~l~~a~k 348 (352)
T 3mcz_A 312 NHGELHPTPWIAGVVRDAGLAVGERS---IGRYTLLIGQR 348 (352)
T ss_dssp TTCCCCCHHHHHHHHHHTTCEEEEEE---ETTEEEEEEEC
T ss_pred CCCCcCCHHHHHHHHHHCCCceeeec---cCceEEEEEec
Confidence 01135689999999999999998842 35577888876
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=154.47 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=132.1
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
+.+...+...++.+|||||||+|..+..+++.+ |+.+++++|+ +.+++.++++++..+.. .++.++.+|+.+.+++
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCT--TTEEEEECCTTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCC--CCEEEEeCccccCCCC
Confidence 344555566778899999999999999999985 6789999999 99999999987654322 4699999999987655
Q ss_pred CCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 139 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
+ +|+|++.+++|++++ ...++++++++|||||.+++.+...+.... .....++ .+....... .
T Consensus 256 ~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~--~~~~~~~~g--~-------- 320 (359)
T 1x19_A 256 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLS--HYILGAGMP--F-------- 320 (359)
T ss_dssp C--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTS-CCHHHHH--HHGGGGGSS--C--------
T ss_pred C--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCC-chHHHHH--HHHHhcCCC--C--------
Confidence 3 399999999999986 788999999999999999998877654311 1111111 111100000 0
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
....+++.++|.++++++||++++..... ...+++++|
T Consensus 321 -~~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~~~vi~a~k 358 (359)
T 1x19_A 321 -SVLGFKEQARYKEILESLGYKDVTMVRKY--DHLLVQAVK 358 (359)
T ss_dssp -CCCCCCCGGGHHHHHHHHTCEEEEEEEET--TEEEEEEEC
T ss_pred -cccCCCCHHHHHHHHHHCCCceEEEEecC--CceEEEEeC
Confidence 01124799999999999999999988875 566777776
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-21 Score=153.80 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=122.5
Q ss_pred CCchhHHHHhhhhhhhhhhhhhhh---hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeC
Q 025144 26 RCSSERQELFSRIAPVYDNLNDLL---SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 102 (257)
...+.+.++|+..+..|....... .......|....+......++.+|||+|||+|..+..+++. +..+++++|+
T Consensus 18 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~ 95 (298)
T 1ri5_A 18 GKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDI 95 (298)
T ss_dssp -----------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEES
T ss_pred hhHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEEC
Confidence 345678888998877665442221 11112222222222223467789999999999999998876 3459999999
Q ss_pred ChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEecccccC----cccHHHHHHHHHhcccCCCEEEEE
Q 025144 103 SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYGLRN----VVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 103 s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~----~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+.+++.++++....+.. .++.++++|+.+.++ ++++||+|++..++++ .+++..+++++.++|||||.+++.
T Consensus 96 s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 96 AEVSINDARVRARNMKRR--FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CHHHHHHHHHHHHTSCCS--SEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCC--ccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999987654321 468999999998876 5789999999999977 457889999999999999999988
Q ss_pred eecCCCchhHHHHHHHHHhhhhhhhh--c--cCC--chhhhhh-hH----HHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 178 DFNKSTQPFTTAIQEWMIDNVVVPVA--S--GYG--LAEEYQY-LK----SSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~--~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.++... ....+............. . ... ....|.. +. ....++++.+++.++|+++||++++...+
T Consensus 174 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 174 VPSRDV--ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp EECHHH--HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred ECCHHH--HHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 755311 111000000000000000 0 000 0000100 00 01124678999999999999999987765
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=146.17 Aligned_cols=178 Identities=22% Similarity=0.270 Sum_probs=127.6
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH
Q 025144 30 ERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109 (257)
Q Consensus 30 ~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 109 (257)
..-..|+..++.|+.+....... .......+.... ++.+|||+|||+|..+..+++ . +++|+|+.+++.
T Consensus 12 ~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~----~---~~vD~s~~~~~~ 80 (219)
T 1vlm_A 12 HMWHIFERFVNEYERWFLVHRFA-YLSELQAVKCLL---PEGRGVEIGVGTGRFAVPLKI----K---IGVEPSERMAEI 80 (219)
T ss_dssp CTTHHHHHTHHHHHHHHHHTHHH-HHHHHHHHHHHC---CSSCEEEETCTTSTTHHHHTC----C---EEEESCHHHHHH
T ss_pred hheeecchhHHHHHHHHHhcchh-HHHHHHHHHHhC---CCCcEEEeCCCCCHHHHHHHH----H---hccCCCHHHHHH
Confidence 44567777788887775432211 111222232332 377999999999999987752 1 999999999999
Q ss_pred HHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHH
Q 025144 110 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 189 (257)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~ 189 (257)
++++ ++.++++|+.++++++++||+|++..++++++++..+++++.++|+|||.+++.+++.... ...
T Consensus 81 a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~- 148 (219)
T 1vlm_A 81 ARKR----------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF-LGR- 148 (219)
T ss_dssp HHHT----------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH-HHH-
T ss_pred HHhc----------CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccH-HHH-
Confidence 8875 5788999998888777899999999999999999999999999999999999988765332 111
Q ss_pred HHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 190 IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+.... ..... . + ...++++.+++.++|+++||++++.....
T Consensus 149 ---~~~~~---~~~~~--~---~-----~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 149 ---EYEKN---KEKSV--F---Y-----KNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp ---HHHHT---TTC-C--C---S-----TTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ---HHHHH---hcCcc--h---h-----cccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 11100 00000 0 0 01246799999999999999999877653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=151.06 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=113.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCccc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFD 143 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 143 (257)
...++.+|||||||+|.++..+++. +.+++++|+|+.+++.++++ +.++.+|..+. ++++++||
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD 103 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLD 103 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBS
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCee
Confidence 3466789999999999999999887 46899999999999998754 67788888764 66788999
Q ss_pred EEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc
Q 025144 144 AITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 144 ~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
+|++..+++|++ +...++++++++|||||.+++..++...... ...++. . .....
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~----~----------------~~~~~ 160 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYS---LINFYI----D----------------PTHKK 160 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHH---HHHHTT----S----------------TTCCS
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHH---HHHHhc----C----------------ccccc
Confidence 999999999998 4599999999999999999998776433211 111110 0 01124
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeec
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.++.+++.++++++||++++...+.
T Consensus 161 ~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 161 PVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCeEEEEEEec
Confidence 6688999999999999998877664
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=151.34 Aligned_cols=173 Identities=23% Similarity=0.321 Sum_probs=122.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
+++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+.. ...++.+..+|+.++++++++||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 46789999999999999999887 569999999999999999987653321 0126899999999988888999999
Q ss_pred EecccccCcccHH---HHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhh-hhhhhccCCchhhhhhhHHHHhc
Q 025144 146 TMGYGLRNVVDKR---KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV-VVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 146 ~~~~~l~~~~~~~---~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
++..++++++++. .++++++++|||||.+++.++........ ......... .....+.+..............+
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--YRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--HHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--HHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 9999999998877 89999999999999999998776433221 111111000 00000000000000000001124
Q ss_pred cCCHHHHHHHHHHcCceeeEEeee
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.++.+++.++|+++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 679999999999999999987654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=151.46 Aligned_cols=141 Identities=19% Similarity=0.215 Sum_probs=115.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.+|||+|||+|..+..+++ ++.+|+++|+|+.+++.++++....+.. .++.++++|+.+++ ++++||+|++..
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~-~~~~fD~v~~~~ 140 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKA--EYFSFVKEDVFTWR-PTELFDLIFDYV 140 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGG--GGEEEECCCTTTCC-CSSCEEEEEEES
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCC--cceEEEECchhcCC-CCCCeeEEEECh
Confidence 34999999999999998875 4679999999999999999988653322 57999999999876 456899999999
Q ss_pred cccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 150 GLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 150 ~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
++++++ +...+++++.++|||||.+++.++........ . ...++.++
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----------------------~---------~~~~~~~~ 189 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG----------------------P---------PYKVDVST 189 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC----------------------S---------SCCCCHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC----------------------C---------CccCCHHH
Confidence 999998 88999999999999999999887654321100 0 01357899
Q ss_pred HHHHHHHcCceeeEEeeecC
Q 025144 228 LEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~~~ 247 (257)
+.++|+++||++++......
T Consensus 190 ~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 190 FEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp HHHHHGGGTEEEEEEEECTT
T ss_pred HHHHHHHcCCeEEEEEecCC
Confidence 99999999999998877643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=147.56 Aligned_cols=132 Identities=23% Similarity=0.412 Sum_probs=103.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
.|++.+..|+...... ....+.+.+...+ .++.+|||+|||+|..+..+++. .+++++|+|+.+++.++++
T Consensus 3 ~y~~~a~~yd~~~~~~---~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~ 73 (243)
T 3d2l_A 3 AYEQFAYVYDELMQDV---PYPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEK 73 (243)
T ss_dssp ---CTTHHHHHHTTTC---CHHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhcc---cHHHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHh
Confidence 5888899998865422 2344555555554 34679999999999999988754 6999999999999999998
Q ss_pred hhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc-cccCc---ccHHHHHHHHHhcccCCCEEEEEee
Q 025144 114 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY-GLRNV---VDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+ .++.+.++|+.+.+++ ++||+|++.. +++|+ ++...++++++++|+|||.+++...
T Consensus 74 ~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 74 AMETN----RHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp HHHTT----CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcC----CceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 76443 5799999999887765 7899999986 88888 4678899999999999999987543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=154.03 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh---CCCce--EEEEeCChhHHHHHHhhhhhhhhccCCCee--EEEccCCCCC----
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV---GSQGK--VIGLDFSKNQLSMASSRQDLVSKACYKNIE--WVEGDALDLP---- 136 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~--v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~--~~~~d~~~~~---- 136 (257)
.++.+|||||||+|..+..+++.+ .+... ++++|+|++|++.++++...... ..++. +..++..+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CTTEEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CCcceEEEEecchhhhhhhhc
Confidence 456799999999998765443321 24554 49999999999999988753211 13444 4455554432
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
+++++||+|++.+++||++|+...|++++++|||||.+++....... .+...+..+. ... ...
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~-~~~--------~~~----- 193 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-GWDKLWKKYG-SRF--------PQD----- 193 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-HHHHHHHHHG-GGS--------CCC-----
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc-cHHHHHHHHH-Hhc--------cCC-----
Confidence 45789999999999999999999999999999999999988655322 2111111111 000 000
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEE
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKH 242 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 242 (257)
....+++.+++.++|+++||+++..
T Consensus 194 ---~~~~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 194 ---DLCQYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp ---TTCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred ---CcccCCCHHHHHHHHHHCCCceEEE
Confidence 0124678999999999999987763
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=148.51 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=111.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh---------ccCCCeeEEEccCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK---------ACYKNIEWVEGDALD 134 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---------~~~~~~~~~~~d~~~ 134 (257)
.+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++...... ....++.++++|+.+
T Consensus 17 ~l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 17 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred hcccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 345667889999999999999999987 56999999999999999987532100 001589999999999
Q ss_pred CCCCC-CcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhh
Q 025144 135 LPFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211 (257)
Q Consensus 135 ~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (257)
+++++ ++||+|++..++++++ +...++++++++|||||.+++.....+... . .+ .
T Consensus 94 l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---------------~-~~-----~- 151 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---------------L-EG-----P- 151 (203)
T ss_dssp STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---------------S-SS-----C-
T ss_pred CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---------------c-CC-----C-
Confidence 87654 7899999999999886 356789999999999999555554432110 0 00 0
Q ss_pred hhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...++.+++.+++++ ||++......
T Consensus 152 --------~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 --------PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp --------CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred --------CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 012478999999988 9998766543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=151.73 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=122.1
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||||||+|..+..+++.+ |+.+++++|+ +.++. +++.+..+.. .++.++.+|+.+ +.+
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~--~~v~~~~~d~~~-~~p- 246 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVA--GRWKVVEGDFLR-EVP- 246 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGT--TSEEEEECCTTT-CCC-
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCC--CCeEEEecCCCC-CCC-
Confidence 44455566778899999999999999999985 6789999999 44544 3333222222 589999999973 444
Q ss_pred CcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchh--HHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 140 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPF--TTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
+||+|++.+++|++++. ..+|++++++|||||.+++.+...+.... ......... ...
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~---~~~-------------- 308 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMM---LAA-------------- 308 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHH---HHT--------------
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhh---hhc--------------
Confidence 79999999999999876 69999999999999999998876544321 111111110 000
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
.....++.++|.++++++||++++++. ..+...++.++
T Consensus 309 --~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~ 346 (348)
T 3lst_A 309 --RTGQERTAAELEPLFTAAGLRLDRVVG-TSSVMSIAVGV 346 (348)
T ss_dssp --TSCCCCBHHHHHHHHHHTTEEEEEEEE-CSSSCEEEEEE
T ss_pred --CCCcCCCHHHHHHHHHHCCCceEEEEE-CCCCcEEEEEE
Confidence 001356899999999999999999888 55566666654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=144.47 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDL 135 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~ 135 (257)
.+.+...+...++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++...+.. ...++.++++|+...
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 3444444555677899999999999999999873 5579999999999999999987543211 013799999999877
Q ss_pred CCCCCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.+.++||+|++..+++++++. ..+++++.++|||||.+++..
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 6666899999999999999855 899999999999999765543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=152.76 Aligned_cols=208 Identities=16% Similarity=0.175 Sum_probs=125.0
Q ss_pred HHHHhhhhh-hhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH
Q 025144 31 RQELFSRIA-PVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109 (257)
Q Consensus 31 ~~~~y~~~a-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 109 (257)
..++|+..+ ..|+...... ......+.+...+...++ +|||||||+|.++..+++. +.+|+++|+|+.+++.
T Consensus 47 ~~~~y~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~ 119 (299)
T 3g2m_A 47 LCDFYDEGAADTYRDLIQDA---DGTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAA 119 (299)
T ss_dssp EEECC--------------C---CCHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhccc---CccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHH
Confidence 445666655 5666654321 122333444455544444 9999999999999999876 5789999999999999
Q ss_pred HHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec-ccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 110 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-YGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++++....+.....++.++++|+.++++ +++||+|++. .++++++ +...++++++++|||||.+++..++......
T Consensus 120 a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 198 (299)
T 3g2m_A 120 FRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAES 198 (299)
T ss_dssp HHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHS
T ss_pred HHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccc
Confidence 9998765431111479999999999876 6889999865 5566665 4689999999999999999998766532100
Q ss_pred H--HHHHHHHH-hhhhhhhhc-------c--CCc----hhhhh-hhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 187 T--TAIQEWMI-DNVVVPVAS-------G--YGL----AEEYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 187 ~--~~~~~~~~-~~~~~~~~~-------~--~~~----~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
. .....+.. ......... . ... ..... .......++++.+++.++|+++||++++...+.
T Consensus 199 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 199 EPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp CCCCC-------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 0 00000000 000000000 0 000 00000 000011246799999999999999999998875
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=149.69 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=108.9
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-------------------------
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------------------- 120 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------------------- 120 (257)
+..++.+|||||||+|.++..++.. ...+|+++|+|+.|++.|+++++.....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4556789999999999887766544 1237999999999999998865432100
Q ss_pred -cCCCee-EEEccCCCC-CC---CCCcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 121 -CYKNIE-WVEGDALDL-PF---SDCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 121 -~~~~~~-~~~~d~~~~-~~---~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
...++. ++++|+.+. ++ ..++||+|++++++|++ ++...++++++++|||||.+++.+........
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~---- 205 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM---- 205 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE----
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce----
Confidence 001243 889999873 32 25689999999999985 46678999999999999999998754322100
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
. +. ..+ ....++.+++.++|+++||++++.....
T Consensus 206 ----~-----------g~-~~~------~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 206 ----V-----------GK-REF------SCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp ----E-----------TT-EEE------ECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ----e-----------CC-eEe------eccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 0 00 000 0124588999999999999999887753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=150.03 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=117.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++++ |+|+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~p~~--D~v~ 266 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF---------SGVEHLGGDMFD-GVPKG--DAIF 266 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCCCC--SEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc---------CCCEEEecCCCC-CCCCC--CEEE
Confidence 5567899999999999999999985 7889999999 8888766543 589999999987 56544 9999
Q ss_pred ecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHH---HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc
Q 025144 147 MGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTT---AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 147 ~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
+.+++|++++. ..+|++++++|||||.+++.+...+...... .......-.+..... ...
T Consensus 267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------------~g~ 331 (368)
T 3reo_A 267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNP---------------GGK 331 (368)
T ss_dssp EESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSS---------------BCC
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcC---------------CCc
Confidence 99999999754 5789999999999999999987755432111 111111100000000 013
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeecCceeEE
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~ 252 (257)
.++.++|+++|+++||+++++....++.+.+
T Consensus 332 ~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vi 362 (368)
T 3reo_A 332 ERTEKEFQALAMASGFRGFKVASCAFNTYVM 362 (368)
T ss_dssp CCCHHHHHHHHHHTTCCEEEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHCCCeeeEEEEeCCCcEEE
Confidence 4688999999999999999999887665533
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=151.33 Aligned_cols=173 Identities=19% Similarity=0.163 Sum_probs=124.6
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...+...++.+|||||||+|..+..+++.+ ++.+++++|+ +.+++.+++++...+.. .++.++.+|+.+ +++.
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~~- 247 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA--DRVTVAEGDFFK-PLPV- 247 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCSC-
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCC--CceEEEeCCCCC-cCCC-
Confidence 4444556678899999999999999999985 6789999999 99999999987654322 489999999976 3443
Q ss_pred cccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEee--cCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 141 FFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDF--NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
.||+|++.+++|++++. ..++++++++|||||.+++.+. ..+.... .....+....+. .
T Consensus 248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~-~--------------- 310 (374)
T 1qzz_A 248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD-RFFSTLLDLRML-T--------------- 310 (374)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--------HHHHHHHHHHHH-H---------------
T ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC-cchhhhcchHHH-H---------------
Confidence 49999999999999875 4899999999999999999887 4332211 111111110000 0
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeeecCcee----EEEeee
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM----GNLVAT 256 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~----~~~~~~ 256 (257)
....+.++.+++.++|+++||++++........+ .++.++
T Consensus 311 ~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~ 354 (374)
T 1qzz_A 311 FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 354 (374)
T ss_dssp HHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEE
T ss_pred hCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEE
Confidence 0012457999999999999999999887744321 555554
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=144.29 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=94.7
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLPF 137 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~~~ 137 (257)
.+...+...++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++...+.. ...++.++++|+...+.
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 34444444567899999999999999998873 5579999999999999999987543211 01289999999987776
Q ss_pred CCCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEE
Q 025144 138 SDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++++||+|++..++++++++ ..+++++.++|||||.++..
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 67899999999999999855 79999999999999966544
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-20 Score=141.91 Aligned_cols=117 Identities=27% Similarity=0.435 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+...+...+ .++.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++....+ .++.++++|+.+
T Consensus 26 ~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~ 96 (227)
T 1ve3_A 26 ETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARK 96 (227)
T ss_dssp HHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTS
T ss_pred HHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhc
Confidence 33444444433 347799999999999999998772 399999999999999999876543 589999999998
Q ss_pred CCCCCCcccEEEeccc--ccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 135 LPFSDCFFDAITMGYG--LRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++++++||+|++..+ +++.+++..++++++++|+|||.+++.+.+
T Consensus 97 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 97 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8777789999999999 556668899999999999999999988765
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=141.58 Aligned_cols=166 Identities=20% Similarity=0.199 Sum_probs=122.0
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhh----HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeC
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQ----HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 102 (257)
..+...++|+..+..|+.......... .......+..+....++.+|||+|||+|..+..+. .+++++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~ 94 (215)
T 2zfu_A 21 PSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDL 94 (215)
T ss_dssp CHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEES
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeC
Confidence 356677888888888887654322110 00111222223345677899999999999887662 58999999
Q ss_pred ChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 103 SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 103 s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
|+. ++.+.++|+.++++++++||+|++..++|+ +++..++++++++|+|||.+++.++..
T Consensus 95 s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~- 154 (215)
T 2zfu_A 95 ASL------------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS- 154 (215)
T ss_dssp SCS------------------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG-
T ss_pred CCC------------------CceEEEeccccCCCCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC-
Confidence 986 356789999988887889999999999974 889999999999999999999887432
Q ss_pred CchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 183 TQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.+.+.+++.++++++||++++... ..+.+.+++++|
T Consensus 155 --------------------------------------~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~~~~~~k 190 (215)
T 2zfu_A 155 --------------------------------------RFEDVRTFLRAVTKLGFKIVSKDL-TNSHFFLFDFQK 190 (215)
T ss_dssp --------------------------------------GCSCHHHHHHHHHHTTEEEEEEEC-CSTTCEEEEEEE
T ss_pred --------------------------------------CCCCHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEe
Confidence 123678999999999999887544 344555565554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-22 Score=166.83 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=123.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||||||+|.++..+++. +.+++++|+|+.+++.++++.... ....+...+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~ 164 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREKGIRV-----RTDFFEKATADD 164 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTTTCCE-----ECSCCSHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHcCCCc-----ceeeechhhHhh
Confidence 344455566667778889999999999999999876 469999999999999998761100 011122333334
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
+++++++||+|++.++++|++++..++++++++|||||.+++..++... .... .. .... +
T Consensus 165 l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~~---~~---~~~~------~-- 224 (416)
T 4e2x_A 165 VRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD------IVAK---TS---FDQI------F-- 224 (416)
T ss_dssp HHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH------HHHH---TC---GGGC------S--
T ss_pred cccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH------hhhh---cc---hhhh------h--
Confidence 4455688999999999999999999999999999999999887654211 1000 00 0000 0
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeeec--CceeEEEeee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYELS--GGLMGNLVAT 256 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~--~g~~~~~~~~ 256 (257)
.....+++.+++.++++++||++++...+. +|...+++++
T Consensus 225 --~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 225 --DEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLAR 266 (416)
T ss_dssp --TTCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEE
T ss_pred --hhhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEe
Confidence 111246799999999999999999988754 6666666654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=146.69 Aligned_cols=139 Identities=27% Similarity=0.374 Sum_probs=103.6
Q ss_pred HHhhhhhhhhhhhhhhhhh--hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 33 ELFSRIAPVYDNLNDLLSF--GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 33 ~~y~~~a~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
++|+.+++.|+........ .....+...+.......++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+
T Consensus 3 ~~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a 79 (252)
T 1wzn_A 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVA 79 (252)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHH
Confidence 5788888888886542211 111122222333344456789999999999999999876 56999999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc-ccCc--ccHHHHHHHHHhcccCCCEEEEEee
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG-LRNV--VDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++....+ .++.++++|+.+++++ ++||+|++... ++++ ++...++++++++|+|||.+++...
T Consensus 80 ~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 80 RRKAKERN----LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp HHHHHHTT----CCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhcC----CceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 99876543 4799999999987754 68999998643 4444 3578899999999999999977543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-19 Score=147.62 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=120.5
Q ss_pred HhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 62 VSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 62 ~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
...+. ..+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 193 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~p~~ 260 (364)
T 3p9c_A 193 LELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF---------PGVTHVGGDMFK-EVPSG 260 (364)
T ss_dssp HHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCCCC
T ss_pred HHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc---------CCeEEEeCCcCC-CCCCC
Confidence 33344 6677899999999999999999985 7889999999 8887766543 589999999988 66644
Q ss_pred cccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHH---HHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 141 FFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTT---AIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
|+|++.+++|++++ ...+|++++++|||||.+++.+...+...... .........+.....
T Consensus 261 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~------------ 326 (364)
T 3p9c_A 261 --DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP------------ 326 (364)
T ss_dssp --SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS------------
T ss_pred --CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc------------
Confidence 99999999999964 56889999999999999999987765432111 111111101100000
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
....++.++|+++|+++||+++++....+..+ ++.+.
T Consensus 327 ---~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie~~ 363 (364)
T 3p9c_A 327 ---GGRERYEREFQALARGAGFTGVKSTYIYANAW-AIEFT 363 (364)
T ss_dssp ---SCCCCBHHHHHHHHHHTTCCEEEEEEEETTEE-EEEEE
T ss_pred ---CCccCCHHHHHHHHHHCCCceEEEEEcCCceE-EEEEe
Confidence 01345889999999999999999988865544 44443
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=147.89 Aligned_cols=174 Identities=20% Similarity=0.214 Sum_probs=127.3
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...+...++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. .++.++.+|+.+ +++.
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~~- 248 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS--DRVDVVEGDFFE-PLPR- 248 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCSS-
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCC--CceEEEeCCCCC-CCCC-
Confidence 3444566778899999999999999999984 6789999999 99999999987654432 489999999976 3443
Q ss_pred cccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeec-CCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 141 FFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFN-KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
.||+|++.+++|++++. ..++++++++|+|||.+++.+.. .+.... .....+....+.. .
T Consensus 249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~~~~----------------~ 311 (360)
T 1tw3_A 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF-NEQFTELDLRMLV----------------F 311 (360)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC-SHHHHHHHHHHHH----------------H
T ss_pred CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC-cchhhhccHHHhh----------------h
Confidence 49999999999999865 58999999999999999998876 332211 0111111100000 0
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeeecCc----eeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYELSGG----LMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g----~~~~~~~~k 257 (257)
.....++.+++.++|+++||++++....... ...++.++|
T Consensus 312 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 312 LGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 0124568999999999999999998877543 155666553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=144.13 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=113.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh---------hhh-----ccC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---------VSK-----ACY 122 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---------~~~-----~~~ 122 (257)
+.+.+.......++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++... .+. ...
T Consensus 56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (252)
T 2gb4_A 56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS 132 (252)
T ss_dssp HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCC
Confidence 3333433334456789999999999999999976 57999999999999999876531 000 011
Q ss_pred CCeeEEEccCCCCCCCC-CcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhh
Q 025144 123 KNIEWVEGDALDLPFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 199 (257)
Q Consensus 123 ~~~~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (257)
.++.++++|+.++++++ ++||+|++..++++++ +...+++++.++|||||.+++.++.......
T Consensus 133 ~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------- 199 (252)
T 2gb4_A 133 GSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------- 199 (252)
T ss_dssp SSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC-------------
T ss_pred CceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC-------------
Confidence 58999999999987653 7899999999999885 4577899999999999999766554321100
Q ss_pred hhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 200 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+ .. ..++.+++.+++.. +|+++.....
T Consensus 200 ---~g-----~~---------~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 200 ---AG-----PP---------FYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp ---CC-----SS---------CCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred ---CC-----CC---------CCCCHHHHHHHhhC-CeEEEEEecc
Confidence 00 00 12578999999987 5998876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=135.82 Aligned_cols=129 Identities=24% Similarity=0.280 Sum_probs=109.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++. .++.+++.|+.+.++++++||+|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEE
Confidence 457789999999999999999876 469999999999999999876 578999999998877778999999
Q ss_pred ec-ccccCc--ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 147 MG-YGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 147 ~~-~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+. .+++++ ++...+++++.++|+|||.+++...... .+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---------------------------------------~~ 153 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR---------------------------------------GW 153 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS---------------------------------------SC
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------------------------------Cc
Confidence 98 678877 4568899999999999999988654321 13
Q ss_pred CHHHHHHHHHHcCceeeEEeee
Q 025144 224 TGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+.+++.++++++||++++....
T Consensus 154 ~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 154 VFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CHHHHHHHHHHHTEEEEEEESS
T ss_pred CHHHHHHHHHHcCCEEeeeecc
Confidence 6789999999999999887543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=150.19 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=122.9
Q ss_pred HHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 61 AVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 61 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
+...+. ..++.+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~~ 267 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL---------SGIEHVGGDMFA-SVPQ 267 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCCC
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc---------CCCEEEeCCccc-CCCC
Confidence 333443 5667899999999999999999985 6789999999 8888776642 579999999987 5553
Q ss_pred CcccEEEecccccCcccHH--HHHHHHHhcccCCCEEEEEeecCCCchhHHH---HHHHHHhhhhhhhhccCCchhhhhh
Q 025144 140 CFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTA---IQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
||+|++.+++|++++.. .+|++++++|||||.+++.+...+....... ...+....+..
T Consensus 268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 331 (372)
T 1fp1_D 268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-------------- 331 (372)
T ss_dssp --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--------------
T ss_pred --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh--------------
Confidence 99999999999998876 9999999999999999998866544321100 11111100000
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++.++|.++|+++||++++......+.+.++.++|
T Consensus 332 --~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 332 --TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp --HHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred --ccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 00013458899999999999999998886555236766664
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=140.13 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=116.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++.+|||+|||+|..+..++.. ++.+++++|+|+.+++.++++....+ .++.+.++|+.++++++++||+|
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v 93 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLPFKDESMSFV 93 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCCSCTTCEEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCCCCCCceeEE
Confidence 4556789999999999985555444 36799999999999999999876543 57899999999988878899999
Q ss_pred EecccccCc--ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH---HHHh
Q 025144 146 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK---SSIR 220 (257)
Q Consensus 146 ~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 220 (257)
++..+++|+ +++..++++++++|||||.+++.+++.+...... .. +... ..|.... ....
T Consensus 94 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------~~--~~~~-----~~~~~~~~~~~~~~ 158 (209)
T 2p8j_A 94 YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK--------GE--KIGE-----GEFLQLERGEKVIH 158 (209)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTC--------SE--EEET-----TEEEECC-CCCEEE
T ss_pred EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccc--------hh--hhcc-----ccceeccCCCceeE
Confidence 999999999 6789999999999999999999887754422100 00 0000 0000000 0012
Q ss_pred ccCCHHHHHHHHHHcCceeeEEe
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
++++.+++.+++++.||...+..
T Consensus 159 ~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 159 SYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp EEECHHHHHHTTTTSEEEEEEEE
T ss_pred EecCHHHHHHHHhhcCceeeeee
Confidence 46799999999999999766544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=145.72 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=96.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCCCCCC------
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPFSD------ 139 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~------ 139 (257)
..++.+|||+|||+|..+..+++.+.+..+|+++|+|+.+++.++++.... +. ..++.++++|+.++++++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT--YKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C--CTTEEEEECCTTCCGGGCTTTTTS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC--CCceEEEEcCHHhCCccccccccC
Confidence 357789999999999999999987546789999999999999999987654 11 168999999999987666
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++||+|++..+++++ ++..+++++.++|||||.+++.++.
T Consensus 112 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 112 QKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp SCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 799999999999999 9999999999999999999885543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=140.51 Aligned_cols=148 Identities=17% Similarity=0.120 Sum_probs=116.3
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...+...++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+. +++.+..+|+.+.++ ++
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~-~~ 96 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENL---DNLHTRVVDLNNLTF-DR 96 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECCGGGCCC-CC
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCC---CCcEEEEcchhhCCC-CC
Confidence 334445556789999999999999999876 56999999999999999998765432 479999999998877 78
Q ss_pred cccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 141 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+||+|++..++++++ +...+++++.++|||||.+++.+......... + ..
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-------------~--------~~------- 148 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-------------T--------VG------- 148 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-------------C--------SC-------
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC-------------C--------CC-------
Confidence 899999999999997 78999999999999999988876554332100 0 00
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
....++.+++.+++++ |++++..+.
T Consensus 149 ~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 149 FPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp CSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred CCCccCHHHHHHHhcC--CeEEEeccc
Confidence 0124588999999976 998886643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-20 Score=147.58 Aligned_cols=125 Identities=24% Similarity=0.256 Sum_probs=102.9
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEcc
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGD 131 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d 131 (257)
....+.+.+...+...++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++...... ....++.+..+|
T Consensus 41 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 34556667777766667889999999999999999887 45999999999999999887532111 011478899999
Q ss_pred CCCCC---CCCCcccEEEec-ccccCccc-------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 132 ALDLP---FSDCFFDAITMG-YGLRNVVD-------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 132 ~~~~~---~~~~~~D~v~~~-~~l~~~~~-------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+++ +++++||+|++. ++++|+++ +..++++++++|||||.+++...+
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98876 677899999998 89999998 999999999999999999887654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-19 Score=139.24 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=110.2
Q ss_pred CCCCCeEEEecCCC---ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------
Q 025144 67 AKTGDNVLDVCCGS---GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------- 136 (257)
Q Consensus 67 ~~~~~~vLdiG~G~---G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------- 136 (257)
..+..+|||||||+ |..+..+.+. .|+.+|+++|+|+.|++.+++++... .++.++++|+.+..
T Consensus 75 ~~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~~-----~~v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 75 EAGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAKD-----PNTAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp TTCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTTC-----TTEEEEECCTTCHHHHHHSHH
T ss_pred ccCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCCC-----CCeEEEEeeCCCchhhhccch
Confidence 34457999999999 9887666665 47789999999999999999987432 58999999997631
Q ss_pred ----CCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchh
Q 025144 137 ----FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE 210 (257)
Q Consensus 137 ----~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (257)
++.++||+|++..++|++++ +..++++++++|+|||.|++.+...............+...
T Consensus 149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~------------- 215 (274)
T 2qe6_A 149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITREN------------- 215 (274)
T ss_dssp HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHH-------------
T ss_pred hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhc-------------
Confidence 33357999999999999986 89999999999999999999887753311111111111100
Q ss_pred hhhhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 211 EYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
.....+++.+++.++| .||++++
T Consensus 216 ------~~~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 216 ------LGEGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp ------HSCCCCBCHHHHHHTT--TTCEECT
T ss_pred ------CCCCccCCHHHHHHHh--CCCeEcc
Confidence 0011356899999999 5998775
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=147.07 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=119.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. +++.++.+|+.+ +++ .||+|+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~p--~~D~v~ 251 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFT-SIP--NADAVL 251 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTT-CCC--CCSEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC---------CCcEEEeccccC-CCC--CccEEE
Confidence 3456799999999999999999985 6789999999 9998877652 469999999976 544 399999
Q ss_pred ecccccCcccHH--HHHHHHHhcccC---CCEEEEEeecCCCchhH---HHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 147 MGYGLRNVVDKR--KALEESFRVLKP---GSRISVLDFNKSTQPFT---TAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 147 ~~~~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+.+++|++++.. .+|++++++||| ||.+++.+...+..... ..........+.. ..
T Consensus 252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~--------------- 315 (352)
T 1fp2_A 252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LN--------------- 315 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GT---------------
T ss_pred eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-cc---------------
Confidence 999999998776 999999999999 99999998765443211 1111111100100 00
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...++.++|.++++++||++++.... .+...++.+++
T Consensus 316 -g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 352 (352)
T 1fp2_A 316 -GKERNEEEWKKLFIEAGFQHYKISPL-TGFLSLIEIYP 352 (352)
T ss_dssp -CCCEEHHHHHHHHHHTTCCEEEEEEE-ETTEEEEEEEC
T ss_pred -CCCCCHHHHHHHHHHCCCCeeEEEec-CCCcEEEEEeC
Confidence 12458899999999999999998875 45566776654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=149.41 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=106.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--------------cc------------
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------------AC------------ 121 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------------~~------------ 121 (257)
.++.+|||||||+|.....++.. +..+|+++|+|+.|++.|+++++.... ..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 36789999999999955434332 356999999999999999886542100 00
Q ss_pred -CCCeeEEEccCCC-CC-----CCCCcccEEEecccccC----cccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 122 -YKNIEWVEGDALD-LP-----FSDCFFDAITMGYGLRN----VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 122 -~~~~~~~~~d~~~-~~-----~~~~~~D~v~~~~~l~~----~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
...+.++.+|+.+ .+ +++++||+|++++++++ ++++..++++++++|||||.+++...........
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~--- 224 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA--- 224 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE---
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc---
Confidence 0014677789887 44 33467999999999999 6678999999999999999998875332110000
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+. ..+ ...+++.+++.++|+++||+++++....
T Consensus 225 ----------------~~-~~~------~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 225 ----------------GE-ARL------TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ----------------TT-EEE------ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----------------CC-eee------eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 00 000 0135689999999999999999877654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=139.05 Aligned_cols=116 Identities=19% Similarity=0.298 Sum_probs=99.9
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.... +++.++++|+.++
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~ 109 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQF 109 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTC
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhC
Confidence 44555665677778889999999999999999876 369999999999999999987543 4899999999998
Q ss_pred CCCCCcccEEEecccccCcccH---HHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLRNVVDK---RKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ++++||+|++..+++|++++ ..+++++.++|||||.+++.+..
T Consensus 110 ~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 110 S-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp C-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred C-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7 57899999999999999876 56799999999999999887654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=138.33 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=118.0
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFS 138 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~~ 138 (257)
+...+. .++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++. ..+..+|+.+ .+++
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~ 90 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPYE 90 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCSC
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCCC
Confidence 344444 56789999999999999999876 379999999999999998764 3678889876 4566
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+++||+|++..+++|++++..++++++++|+|||.+++..++...... ............. .+ .....
T Consensus 91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~---~~------~~~~~ 158 (230)
T 3cc8_A 91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISV---LAPLLAGNWTYTE---YG------LLDKT 158 (230)
T ss_dssp TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHH---HHHHHTTCCCCBS---SS------TTBTT
T ss_pred CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHH---HHHHhcCCceecc---CC------CCCcc
Confidence 789999999999999999999999999999999999988766543211 1111110000000 00 00011
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
..++++.+++.++++++||++++.....
T Consensus 159 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 159 HIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp CCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 1246799999999999999999877654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-20 Score=145.89 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=113.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-------------------------
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------------------- 120 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------------------- 120 (257)
...++.+|||+|||+|..+..+++.. . .+|+++|+|+.+++.+++++...+..
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 34567799999999999998887652 2 48999999999999999887532100
Q ss_pred -cCCCe-eEEEccCCCCCC-CC---CcccEEEeccccc----CcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 121 -CYKNI-EWVEGDALDLPF-SD---CFFDAITMGYGLR----NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 121 -~~~~~-~~~~~d~~~~~~-~~---~~~D~v~~~~~l~----~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
...++ .+.++|+.+... ++ ++||+|++..+++ +.+++..++++++++|||||.+++.+.......
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~----- 205 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY----- 205 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-----
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE-----
Confidence 00127 899999987642 45 7899999999999 666889999999999999999998875432100
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
... ... + ....++.+++.++|+++||++++.....
T Consensus 206 ----~~~----------~~~-~------~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 ----MIG----------EQK-F------SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ----EET----------TEE-E------ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ----EcC----------Ccc-c------cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000 000 0 0124588899999999999999887654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=140.21 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=114.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC-----C
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD-----C 140 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~ 140 (257)
...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++... .++.++++|+.+++... .
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENTA------ANISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSCC------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCcc------cCceEEECccccccccccccccc
Confidence 35677899999999999999999883 3899999999999999988732 48999999998864321 2
Q ss_pred cccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH-
Q 025144 141 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS- 217 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (257)
.||+|++..++++++ +...++++++++|||||.+++.++..+............. ....... .....
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~ 193 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYG-QLPYELL---------LVMEHG 193 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHS-SCCHHHH---------HHHTTT
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCC-CCchhhh---------hccccC
Confidence 489999999999998 7899999999999999999999887654322221111100 0000000 00000
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.....++.+++.+++ +||++++....
T Consensus 194 ~~~~~~~~~~~~~~~--aGf~~~~~~~~ 219 (245)
T 3ggd_A 194 IRPGIFTAEDIELYF--PDFEILSQGEG 219 (245)
T ss_dssp CCCCCCCHHHHHHHC--TTEEEEEEECC
T ss_pred CCCCccCHHHHHHHh--CCCEEEecccc
Confidence 001245889999999 99999875543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=141.18 Aligned_cols=142 Identities=28% Similarity=0.320 Sum_probs=111.5
Q ss_pred CCchhHHHHhhhhhhhhhhhhhhhhh-hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 26 RCSSERQELFSRIAPVYDNLNDLLSF-GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
+++..+...|+++++.|+........ .......+.+...+. ++.+|||+|||+|..+..+++. +.+++++|+|+
T Consensus 12 ~~~~~~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~ 86 (260)
T 2avn_A 12 HMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSK 86 (260)
T ss_dssp CEECCHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCH
T ss_pred hhhhhhcchhhHHHHHHHHhccccchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCH
Confidence 45677888999999999887632211 112233344444443 6789999999999999999875 56999999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc-ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV-VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+++.++++.. . .++++|+.++++++++||+|++..++.++ +++..++++++++|||||.+++..++.
T Consensus 87 ~~l~~a~~~~~--------~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 87 EMLEVAREKGV--------K-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHTC--------S-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHhhcC--------C-CEEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 99999988752 1 28899999888878899999998876665 789999999999999999999887653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=137.48 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=111.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++ +|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+ .++.+.++|+.+.++++++||+|++
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCCcCCccEEEE
Confidence 456 9999999999999998865 5699999999999999999876543 4789999999988877789999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
.....+.++...+++++.++|||||.+++.++........ .... . ....+++.++
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------------~~~~---~--------~~~~~~~~~~ 155 (202)
T 2kw5_A 101 IFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN--------------TGGP---K--------DLDLLPKLET 155 (202)
T ss_dssp ECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT--------------SCCS---S--------SGGGCCCHHH
T ss_pred EhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCC--------------CCCC---C--------cceeecCHHH
Confidence 6432223478899999999999999999988775442110 0000 0 0124679999
Q ss_pred HHHHHHHcCceeeEEeee
Q 025144 228 LEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~ 245 (257)
+.++++ ||++++....
T Consensus 156 l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 156 LQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHCS--SSCEEEEEEE
T ss_pred HHHHhc--CceEEEEEEE
Confidence 999998 9999886654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=138.40 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+...+. .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+. .++.++++|..
T Consensus 95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~ 169 (276)
T 2b3t_A 95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWF 169 (276)
T ss_dssp HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTT
T ss_pred HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchh
Confidence 4455555555555 567799999999999999999875 678999999999999999999866542 47999999998
Q ss_pred CCCCCCCcccEEEecccccCc-------------------------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 134 DLPFSDCFFDAITMGYGLRNV-------------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~-------------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
+. +++++||+|+++..+... .....+++.+.+.|+|||.+++...
T Consensus 170 ~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~--------- 239 (276)
T 2b3t_A 170 SA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG--------- 239 (276)
T ss_dssp GG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---------
T ss_pred hh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---------
Confidence 73 335789999998544322 2347789999999999999977521
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
..+.+++.++++++||+.++......|..++++++|
T Consensus 240 ---------------------------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ---------------------------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ---------------------------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ---------------------------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 224578889999999998888887888888888875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=134.45 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=92.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 140 (257)
.+.+.|+.+|||+|||+|..+..+++..++..+|+++|+++.|++.++++.+.. +|+..+..|.... +...+
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCC
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccc
Confidence 457899999999999999999999999999999999999999999998887543 5889999988763 35567
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+|+|++. +.+..+...++.++++.|||||.+++..
T Consensus 147 ~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 147 GVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 89999864 3445677889999999999999998865
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=136.00 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=87.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC---CCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~ 144 (257)
.++.+|||+|||+|..+..++.. .++.+|+++|+|+.+++.++++.+..+. .++.++++|+.+++++ +++||+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhcccccccCCccE
Confidence 46789999999999999999876 3678999999999999999998866543 4799999999876543 578999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|++.. +.+...+++.+.++|+|||.+++..
T Consensus 145 V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 145 VTARA----VARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 99866 3678899999999999999998753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=145.86 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=110.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc----------------------------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---------------------------- 120 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------------------------- 120 (257)
++.+|||||||+|..+..+++.+ +..+|+|+|+|+.+++.|++++......
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 57899999999999999999986 4679999999999999999886543210
Q ss_pred ---------------------------cCCCeeEEEccCCCCC-----CCCCcccEEEecccccCcc------cHHHHHH
Q 025144 121 ---------------------------CYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNVV------DKRKALE 162 (257)
Q Consensus 121 ---------------------------~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~------~~~~~l~ 162 (257)
...++.+.++|+.... +.+++||+|++..+++|+. ++..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 0037999999998654 4578999999999997774 7889999
Q ss_pred HHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHH--cCceee
Q 025144 163 ESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE--IGFSRA 240 (257)
Q Consensus 163 ~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gf~~~ 240 (257)
+++++|+|||.|++....+.. ... . ...... .......-.+.++++.++|.+ +||+.+
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~------y~~----~--------~~~~~~--~~~~~~~~~~~p~~~~~~L~~~~~GF~~~ 264 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSS------YGK----R--------KTLTET--IYKNYYRIQLKPEQFSSYLTSPDVGFSSY 264 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHH------HHT----T--------TTSCHH--HHHHHHHCCCCGGGHHHHHTSTTTCCCEE
T ss_pred HHHHHhCCCcEEEEecCCchh------hhh----h--------hcccHH--HHhhhhcEEEcHHHHHHHHHhcCCCceEE
Confidence 999999999999875422110 000 0 000000 000011123467899999999 999888
Q ss_pred EEeee
Q 025144 241 KHYEL 245 (257)
Q Consensus 241 ~~~~~ 245 (257)
+....
T Consensus 265 ~~~~~ 269 (292)
T 3g07_A 265 ELVAT 269 (292)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 76654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-21 Score=147.85 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=109.4
Q ss_pred CCchhHHHHhhhhhhhhhhhhhhhh-------hhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEE
Q 025144 26 RCSSERQELFSRIAPVYDNLNDLLS-------FGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVI 98 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 98 (257)
...++.+..|+..+..|+....... ..+...+.+.+...+ ..++.+|||||||+|..+..+++. ...+++
T Consensus 11 ~~~e~~~~~w~~~~~~yd~~~~~l~~~g~~vm~~we~~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~--~~~~v~ 87 (236)
T 3orh_A 11 APGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEA--PIDEHW 87 (236)
T ss_dssp CTTCBCHHHHTTSCEEECTTSSEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTS--CEEEEE
T ss_pred CCCchhhhhHhcCcCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHh--CCcEEE
Confidence 3456788899998888887532111 112334444444444 356789999999999999998876 246899
Q ss_pred EEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEe-----cccccCcccHHHHHHHHHhcccCC
Q 025144 99 GLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITM-----GYGLRNVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 99 ~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~-----~~~l~~~~~~~~~l~~~~~~Lk~g 171 (257)
++|+|+.+++.|+++....+ .++.++.+|..+. ++++++||.|+. ...+++..+...++++++++||||
T Consensus 88 ~id~~~~~~~~a~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG 163 (236)
T 3orh_A 88 IIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred EEeCCHHHHHHHHHHHhhCC----CceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCC
Confidence 99999999999999876543 5788899887653 467788999975 455667788999999999999999
Q ss_pred CEEEEE
Q 025144 172 SRISVL 177 (257)
Q Consensus 172 G~l~~~ 177 (257)
|+|++.
T Consensus 164 G~l~f~ 169 (236)
T 3orh_A 164 GVLTYC 169 (236)
T ss_dssp EEEEEC
T ss_pred CEEEEE
Confidence 999764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-18 Score=128.36 Aligned_cols=118 Identities=16% Similarity=0.076 Sum_probs=98.5
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+..+..+...+...++.+|||+|||+|..+..+++. .+..+++++|+|+.+++.++++.+..+. .++.++++|..+
T Consensus 26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~ 101 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVA---RNVTLVEAFAPE 101 (204)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTC---TTEEEEECCTTT
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeCChhh
Confidence 334455666777888999999999999999999988 4678999999999999999998865542 589999999976
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....++||+|++...++ +...+++++.++|||||.+++...
T Consensus 102 ~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 102 GLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp TCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEec
Confidence 543347799999988765 778999999999999999988653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-20 Score=143.18 Aligned_cols=147 Identities=15% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCchhHHHHhhhhhhhhhhhhhh-------hhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEE
Q 025144 26 RCSSERQELFSRIAPVYDNLNDL-------LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVI 98 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 98 (257)
.+.++....|+..+..|+..... ........+.+.+.... ..++.+|||||||+|..+..+++. ...+|+
T Consensus 11 ~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~ 87 (236)
T 1zx0_A 11 APGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEA--PIDEHW 87 (236)
T ss_dssp CTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTS--CEEEEE
T ss_pred CCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhc--CCCeEE
Confidence 45667888999988888843321 01112222333333333 456789999999999999999654 234899
Q ss_pred EEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEe-ccccc----CcccHHHHHHHHHhcccCC
Q 025144 99 GLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITM-GYGLR----NVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 99 ~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~-~~~l~----~~~~~~~~l~~~~~~Lk~g 171 (257)
++|+|+.|++.|+++.+..+ .++.++++|+.++ ++++++||+|++ .+.+. +..+...++++++++||||
T Consensus 88 gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg 163 (236)
T 1zx0_A 88 IIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred EEcCCHHHHHHHHHHHHhcC----CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCC
Confidence 99999999999999876543 5799999999887 777889999999 55541 1223457799999999999
Q ss_pred CEEEEEee
Q 025144 172 SRISVLDF 179 (257)
Q Consensus 172 G~l~~~~~ 179 (257)
|.+++.+.
T Consensus 164 G~l~~~~~ 171 (236)
T 1zx0_A 164 GVLTYCNL 171 (236)
T ss_dssp EEEEECCH
T ss_pred eEEEEEec
Confidence 99987654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=142.31 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=118.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. +++.++.+|+.+ +++ .||+|++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~--~~D~v~~ 257 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGN---------ENLNFVGGDMFK-SIP--SADAVLL 257 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCC---------SSEEEEECCTTT-CCC--CCSEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccC---------CCcEEEeCccCC-CCC--CceEEEE
Confidence 456799999999999999999985 6789999999 7888766541 469999999987 554 4999999
Q ss_pred cccccCcccHH--HHHHHHHhcccC---CCEEEEEeecCCCchhH---HHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 148 GYGLRNVVDKR--KALEESFRVLKP---GSRISVLDFNKSTQPFT---TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 148 ~~~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
.+++|++++.. .+|++++++|+| ||.+++.+...+..... ......+.-.+.. ...
T Consensus 258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~----------------~~~ 321 (358)
T 1zg3_A 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT----------------MFL 321 (358)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH----------------HHS
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc----------------cCC
Confidence 99999998866 999999999999 99999988765432211 1111111100000 001
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...++.++|.++|+++||++++.... .+...++.+++
T Consensus 322 g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 358 (358)
T 1zg3_A 322 GKERTKQEWEKLIYDAGFSSYKITPI-SGFKSLIEVYP 358 (358)
T ss_dssp CCCEEHHHHHHHHHHTTCCEEEEEEE-TTTEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHcCCCeeEEEec-CCCcEEEEEeC
Confidence 13568999999999999999998885 55566776654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-18 Score=134.12 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=91.5
Q ss_pred hhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
.+..+.++.+|||||||+|.++..++.+. ++.+|+++|+|++|++.|+++++..+. .+++++++|+.+++ +++|
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l~--d~~F 189 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVID--GLEF 189 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGGG--GCCC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhCC--CCCc
Confidence 46788999999999999998775555443 578999999999999999999876543 58999999998865 6889
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|+|++... .++...+++++.++|||||.+++.+.
T Consensus 190 DvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 190 DVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp SEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 99998654 57889999999999999999988763
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=131.04 Aligned_cols=116 Identities=23% Similarity=0.344 Sum_probs=95.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+ .++.+|||+|||+|..+..+++. ++ .+++++|+|+.+++.++++.... +++.+.++|+.+++
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~~-----~~i~~~~~d~~~~~ 102 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAHV-----PQLRWETMDVRKLD 102 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTTC-----TTCEEEECCTTSCC
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhcccC-----CCcEEEEcchhcCC
Confidence 444444433 56789999999999999999887 33 28999999999999999887531 58999999999888
Q ss_pred CCCCcccEEEecccccCcc---------------cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 FSDCFFDAITMGYGLRNVV---------------DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~---------------~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+++++||+|++..+++++. +...+++++.++|||||.+++.++..
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 7788999999988876543 56889999999999999999887653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-18 Score=131.31 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=108.4
Q ss_pred hhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC----CCCC
Q 025144 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----LPFS 138 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~~~~ 138 (257)
..+...++.+|||+|||+|..+..+++.++ ..+|+++|+|+.+++.++++.+.. .++.++.+|+.+ .+++
T Consensus 68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~ 141 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTS
T ss_pred cccCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccC
Confidence 334566788999999999999999999863 579999999999999999886543 589999999987 5655
Q ss_pred CCcccEEEecccccCcccH---HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 139 DCFFDAITMGYGLRNVVDK---RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
++||+|+ ++++++ ..+++++.++|||||.+++. +............
T Consensus 142 -~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~------------------------ 190 (230)
T 1fbn_A 142 -EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPK------------------------ 190 (230)
T ss_dssp -CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHH------------------------
T ss_pred -ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHH------------------------
Confidence 7899998 344444 77899999999999999886 2211000000000
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeEEeeecCc--eeEEEeee
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAKHYELSGG--LMGNLVAT 256 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g--~~~~~~~~ 256 (257)
....+++. +|+++||++++......- ...+++++
T Consensus 191 ------~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 191 ------EIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp ------HHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred ------HhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEE
Confidence 00126777 889999999988776432 24444544
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=133.54 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=102.2
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
+..++.||..+..|........ ...+.+.+...+...++.+|||+|||+|.++..+++. +.+|+++|+|+.|++
T Consensus 8 ~s~a~~wd~~a~~f~~~~~~~~---~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~ 81 (261)
T 3iv6_A 8 NSKAEAWELIGNQFWTIGRVAA---RPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCD 81 (261)
T ss_dssp CTTHHHHHTTTTHHHHTSCGGG---SCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhccc---cHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHH
Confidence 3456788888877766543211 1234556667778888999999999999999999976 579999999999999
Q ss_pred HHHhhhhhhhhccCCCeeEEEccCCCCCC-----CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 109 MASSRQDLVSKACYKNIEWVEGDALDLPF-----SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.++++.... .++.+..+.+. .+++||+|+++.+++|+. +....++++.++| |||.+++....
T Consensus 82 ~Ar~~~~~~---------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 82 DLAEALADR---------CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp HHHHHTSSS---------CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HHHHHHHhc---------cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 999987431 22333333222 246899999999999874 5677999999999 99999887543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=129.94 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
++.+|||+|||+|..+..+++.. ++.+++++|+|+.+++.++++....+. .++.+.++|+.+.+ +.++||+|++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~-~~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEFP-SEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTSC-CCSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEecchhhCC-ccCCcCEEEEe
Confidence 46799999999999999999885 678999999999999999998765442 46999999998865 45789999975
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. +.+...+++.+.++|+|||.+++..
T Consensus 140 ~----~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 140 A----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp C----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred c----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 4 3567899999999999999998763
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=140.10 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=109.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+ .++.++++|+.+.+. +++||+|++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCCccEEEE
Confidence 36789999999999999999887 5699999999999999999886543 389999999998776 688999999
Q ss_pred cccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 148 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 148 ~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
..++++++ +...+++++.++|+|||.+++............ . .....++.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------~-------------~~~~~~~~ 242 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP---------------L-------------PFSFTFAE 242 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS---------------S-------------CCSCCBCT
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC---------------C-------------CccccCCH
Confidence 99999985 467999999999999999877654432211100 0 00124577
Q ss_pred HHHHHHHHHcCceeeEEeee
Q 025144 226 KDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.++.+++. +|+++...+.
T Consensus 243 ~~l~~~~~--~~~~~~~~~~ 260 (286)
T 3m70_A 243 NELKEYYK--DWEFLEYNEN 260 (286)
T ss_dssp THHHHHTT--TSEEEEEECC
T ss_pred HHHHHHhc--CCEEEEEEcc
Confidence 88988885 4888876543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-19 Score=135.93 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 54 HRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
.+.+.+.+...+.. .++.+|||+|||+|..+..+++.. ++.+++++|+|+.+++.+++++...+ .++.++++|+
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~ 88 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG----AVVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-----------------------CCHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC----CceEEEEcch
Confidence 34455555555554 678899999999999999999984 67799999999999999998876543 2678888888
Q ss_pred CCCCCCC-----CcccEEEecccccCcccH--------------------------HHHHHHHHhcccCCCEEEEEeecC
Q 025144 133 LDLPFSD-----CFFDAITMGYGLRNVVDK--------------------------RKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 133 ~~~~~~~-----~~~D~v~~~~~l~~~~~~--------------------------~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+ ++++ ++||+|+++..++...+. ..+++++.++|||||.+++.....
T Consensus 89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 167 (215)
T 4dzr_A 89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH 167 (215)
T ss_dssp HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 76 4443 889999997665443221 678899999999999955554321
Q ss_pred CCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHH--HcCceeeEEeeecCceeEEEeeeC
Q 025144 182 STQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL--EIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...+++.++++ ++||..++......|..++++++|
T Consensus 168 -----------------------------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~ 204 (215)
T 4dzr_A 168 -----------------------------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTR 204 (215)
T ss_dssp -----------------------------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEE
T ss_pred -----------------------------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEE
Confidence 13467788888 999998888887777777777653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=127.70 Aligned_cols=135 Identities=18% Similarity=0.119 Sum_probs=107.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++. +..+++++|+|+.+++.++++....+. .++.+.++|+.+.. +++||+|+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~--~~~fD~i~ 130 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGI---YDIALQKTSLLADV--DGKFDLIV 130 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTC---CCCEEEESSTTTTC--CSCEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEeccccccC--CCCceEEE
Confidence 456789999999999999998875 356999999999999999998865442 34999999997743 58899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++..+++ ...+++++.++|+|||.+++.++... +.+
T Consensus 131 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------------------~~~ 166 (205)
T 3grz_A 131 ANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------------------QLP 166 (205)
T ss_dssp EESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------------------cHH
Confidence 9887664 47889999999999999988654421 346
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEE
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNL 253 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~ 253 (257)
++.++++++||++++.... .+...++
T Consensus 167 ~~~~~~~~~Gf~~~~~~~~-~~w~~~~ 192 (205)
T 3grz_A 167 KIEQALAENSFQIDLKMRA-GRWIGLA 192 (205)
T ss_dssp HHHHHHHHTTEEEEEEEEE-TTEEEEE
T ss_pred HHHHHHHHcCCceEEeecc-CCEEEEE
Confidence 7889999999999887665 3344443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=131.37 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=118.7
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhh------CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEe
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWS------GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D 101 (257)
.+....+++.+.......+-....+..+.|.+.+...+ ...++.+|||||||+|..+..++... +..+|+++|
T Consensus 33 ~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD 111 (249)
T 3g89_A 33 LEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVD 111 (249)
T ss_dssp HHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEE
Confidence 44555566655544443332222334555555444322 23467899999999999999999884 678999999
Q ss_pred CChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 102 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 102 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+.+++.++++....+. .++.++++|+++++.. .++||+|++..+ .+...+++.+.++|||||.+++..
T Consensus 112 ~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 112 ATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAGHREAYARAVARAV----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTTTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 999999999999876553 4799999999876532 478999998653 467889999999999999998764
Q ss_pred ecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 179 FNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
-.... . ...++.+.++..||++.+...+
T Consensus 185 g~~~~----~-----------------------------------e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 185 GPRVE----E-----------------------------------ELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp CSCCH----H-----------------------------------HHTTHHHHHHHHTEEEEEEEEE
T ss_pred CCCcH----H-----------------------------------HHHHHHHHHHHcCCeEEEEEEe
Confidence 22110 0 1245667788899998887765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=123.75 Aligned_cols=129 Identities=14% Similarity=0.082 Sum_probs=105.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++. . +++++|+|+.|++. . .++.++++|+.+ ++++++||+|++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----~--------~~~~~~~~d~~~-~~~~~~fD~i~~ 84 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----H--------RGGNLVRADLLC-SINQESVDVVVF 84 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----C--------SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----c--------cCCeEEECChhh-hcccCCCCEEEE
Confidence 45669999999999999999876 3 99999999999987 1 689999999988 555689999999
Q ss_pred cccccCcccH---------HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 148 GYGLRNVVDK---------RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 148 ~~~l~~~~~~---------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+..+++.++. ...++++.+.+ |||.+++.....
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------------- 126 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------------- 126 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------------------------
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-------------------------------------
Confidence 9888865443 67888888888 999998876332
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEee
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 255 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~ 255 (257)
.+.+++.++++++||+.........+.-.++..
T Consensus 127 ----~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 127 ----NRPKEVLARLEERGYGTRILKVRKILGETVYII 159 (170)
T ss_dssp ----GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEE
T ss_pred ----CCHHHHHHHHHHCCCcEEEEEeeccCCceEEEE
Confidence 245788899999999999888877776666554
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=135.52 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=98.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCCCC-CCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFS-DCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~D~v 145 (257)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++. +++.++++|+ ..++++ +++||+|
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANA--------PHADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHC--------TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhC--------CCceEEEcchhhccCCcCCCCEEEE
Confidence 56789999999999999999876 569999999999999999883 6899999999 456666 7899999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
++. .++..++++++++|||||.++... ...+.
T Consensus 116 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~------------------------------------------~~~~~ 147 (226)
T 3m33_A 116 VSR------RGPTSVILRLPELAAPDAHFLYVG------------------------------------------PRLNV 147 (226)
T ss_dssp EEE------SCCSGGGGGHHHHEEEEEEEEEEE------------------------------------------SSSCC
T ss_pred EeC------CCHHHHHHHHHHHcCCCcEEEEeC------------------------------------------CcCCH
Confidence 987 366788999999999999997110 12355
Q ss_pred HHHHHHHHHcCceeeEEeee
Q 025144 226 KDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+++.+.++++||++......
T Consensus 148 ~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 148 PEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp THHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEee
Confidence 67888999999987765543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=125.41 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.++..+...+...++.+|||+|||+|..+..+++.+ +..+++++|+|+.+++.+++++...+.. .++ ++.+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~-~~~~d~~ 85 (178)
T 3hm2_A 10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVS--DRI-AVQQGAP 85 (178)
T ss_dssp HHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCT--TSE-EEECCTT
T ss_pred HHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCC--CCE-EEecchH
Confidence 34455666777778888899999999999999999875 6789999999999999999988655432 377 8888875
Q ss_pred C-CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 134 D-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 134 ~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ++..+++||+|++..++++ ..+++++.++|||||.+++.+..
T Consensus 86 ~~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 86 RAFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp GGGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS
T ss_pred hhhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec
Confidence 4 2222278999999998887 67899999999999999887643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-17 Score=126.32 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=103.7
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCccc
Q 025144 66 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFD 143 (257)
Q Consensus 66 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D 143 (257)
...++.+|||+||| +|.++..+++.. ..+|+++|+|+.+++.+++++...+ .++.++++|...+ ++++++||
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD 125 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN----SNVRLVKSNGGIIKGVVEGTFD 125 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT----CCCEEEECSSCSSTTTCCSCEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEeCCchhhhhcccCcee
Confidence 45678899999999 999999999884 5799999999999999999886654 3799999997543 34568999
Q ss_pred EEEecccccCccc-------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhc
Q 025144 144 AITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204 (257)
Q Consensus 144 ~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (257)
+|+++..+++..+ ...+++.+.++|||||.+++......
T Consensus 126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------- 183 (230)
T 3evz_A 126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------- 183 (230)
T ss_dssp EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------
T ss_pred EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------
Confidence 9999877655432 47889999999999999988643321
Q ss_pred cCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
....++.+.++++||++.....
T Consensus 184 ------------------~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 184 ------------------KLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp ------------------HHHHHHHHHHHHTTCEEEEEEE
T ss_pred ------------------hHHHHHHHHHHHcCCceEEEEe
Confidence 0236788899999997665543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=124.49 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=93.1
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
..+..+...+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.+..+.. .++.++++|+.+.
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~ 116 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLS--PRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCTTGG
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCEEEEeCchhhh
Confidence 34455666777888899999999999999999887 579999999999999999988665432 3799999999883
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+.||+|++...+ +.. +++++.++|||||.+++...
T Consensus 117 ~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp GTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred cccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 3233579999987744 455 99999999999999988654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-18 Score=129.39 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=85.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh-hhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
+...++.+|||+|||+|..+..+++.. |+.+|+++|+|+.|++.+.++... ......+++.++++|+.+++++++. |
T Consensus 23 l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d 100 (218)
T 3mq2_A 23 LRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-G 100 (218)
T ss_dssp HHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-E
T ss_pred hhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-C
Confidence 335678899999999999999999984 678999999999998864332211 1111125899999999998877666 7
Q ss_pred EEEeccc---c--cCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYG---L--RNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~---l--~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.|++... + ++++++..++++++++|||||.+++..
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 7774332 2 255677899999999999999998743
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=127.68 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=98.6
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCC--eeEEEccCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN--IEWVEGDAL 133 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~~ 133 (257)
...+.+...+...++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+. .+ +.++.+|+.
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~ 112 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECchh
Confidence 34555666677778889999999999999999876 57999999999999999998865432 34 999999998
Q ss_pred CCCCCCCcccEEEecccccC-cccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 134 DLPFSDCFFDAITMGYGLRN-VVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+. .++++||+|+++..+++ ..+...+++++.++|+|||.+++.....
T Consensus 113 ~~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 113 EN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp TT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cc-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 73 44678999999988887 4567899999999999999999887553
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-18 Score=139.52 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=113.1
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
.......+|+.++..|+.............+.+.+.......++.+|||+|||+|.++..+++. + ..+|+++|+| .|
T Consensus 21 ~~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~ 97 (376)
T 3r0q_C 21 KEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KM 97 (376)
T ss_dssp -------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TT
T ss_pred ccccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HH
Confidence 4456677889999888775444444556777777777777788899999999999999999887 2 3499999999 99
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.++++++..+.. .++.++++|+.+++++ ++||+|++..+.+.+ .++..+++.+.++|||||.+++..
T Consensus 98 ~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 98 ADHARALVKANNLD--HIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp HHHHHHHHHHTTCT--TTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred HHHHHHHHHHcCCC--CeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 99999988765433 4699999999998776 889999996655544 458889999999999999997643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=125.13 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=89.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 145 (257)
.++.+|||+|||+|.++..+++.. |+.+++++|+|+.+++.|+++....+. .++.++++|+.+++ +++++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 456799999999999999999984 678999999999999999998865442 58999999999866 667889999
Q ss_pred EecccccCcc--------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~--------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+.. ....+++.+.++|+|||.+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 9987654332 13679999999999999998764
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=129.03 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=111.9
Q ss_pred HHHHhhhC-CCCCCeEEEecCCC--ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 59 RMAVSWSG-AKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 59 ~~~~~~~~-~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
....+.+. .....+|||||||+ +..+..+++...|+.+|+++|.|+.|++.+++++...+ ..++.++++|+.++
T Consensus 67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEADMLDP 143 (277)
T ss_dssp HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECCTTCH
T ss_pred HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEecccCh
Confidence 33334443 33456999999997 55666666665688999999999999999999875432 14799999999885
Q ss_pred C----CC--CCccc-----EEEecccccCccc---HHHHHHHHHhcccCCCEEEEEeecCCCchh-HHHHHHHHHhhhhh
Q 025144 136 P----FS--DCFFD-----AITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPF-TTAIQEWMIDNVVV 200 (257)
Q Consensus 136 ~----~~--~~~~D-----~v~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 200 (257)
. .+ .+.|| .|+++.+|||+++ +..+++++++.|+|||.|++.+...+..+. ...+...+.... .
T Consensus 144 ~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g-~ 222 (277)
T 3giw_A 144 ASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARN-M 222 (277)
T ss_dssp HHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTT-C
T ss_pred hhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcC-C
Confidence 2 01 23455 6889999999987 578999999999999999998877653321 122222221100 0
Q ss_pred hhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 201 PVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
...+++.+++..+|. ||++++
T Consensus 223 ------------------p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 223 ------------------PMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp ------------------CCCCCCHHHHHHTTT--TSEECT
T ss_pred ------------------CCccCCHHHHHHHhC--CCcccC
Confidence 014679999999995 999664
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=126.51 Aligned_cols=114 Identities=22% Similarity=0.443 Sum_probs=93.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
...++.+|||+|||+|..+..+++.+++..+++++|+|+.+++.+++++...+.. .++.++++|+.+++ ..+++||+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI--DRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG--GGEEEECSCGGGGGGTCCSCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCeEEEECCHHHHhhhccCCceE
Confidence 3567789999999999999999998766679999999999999999998765432 58999999998765 55688999
Q ss_pred EEeccccc---------CcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 145 ITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 145 v~~~~~l~---------~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|+++..+. ...+...+++++.++|||||.+++..+..
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 99877551 11245679999999999999998887553
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=124.87 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=86.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v 145 (257)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.|+++.+..+. .++.+++.+...++ +.+++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~~~~~l~~~~~~~fD~v 93 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI---ENTELILDGHENLDHYVREPIRAA 93 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC---CCEEEEESCGGGGGGTCCSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCcHHHHHhhccCCcCEE
Confidence 467889999999999999999876 57999999999999999999876543 57999998877643 446789999
Q ss_pred Eeccc-ccC--------cccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYG-LRN--------VVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~-l~~--------~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++.. +++ ..+....++++.++|||||.+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 98732 222 134567899999999999999887754
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=123.67 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=82.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 141 (257)
+.+.++.+|||+|||+|..+..+++..++..+|+++|+|+.|++.+.+..... .++.++.+|+.... ...++
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~~~~~~~~~~~~ 146 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADARFPQSYKSVVEN 146 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTTCGGGTTTTCCC
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccccchhhhccccc
Confidence 34788999999999999999999998877889999999999876554433221 58999999997642 12468
Q ss_pred ccEEEecccccCcccHHHH-HHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKA-LEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~-l~~~~~~Lk~gG~l~~~~ 178 (257)
||+|++.... ++.... ...+.+.|||||.+++..
T Consensus 147 ~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 147 VDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp EEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 9999987654 444444 456666999999998864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-17 Score=123.20 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=81.9
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCC
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDC 140 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 140 (257)
+.+.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.|++.+.+..+.. .++.++.+|.... +++ +
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~ 125 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-E 125 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-C
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-c
Confidence 4566788999999999999999998864 569999999999887666554322 5788889998763 333 7
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+||+|++.. . ...+...++++++++|||||.+++..
T Consensus 126 ~fD~V~~~~-~-~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDI-A-QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECC-C-STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEec-c-ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 899999873 2 22334456899999999999998874
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=135.17 Aligned_cols=118 Identities=21% Similarity=0.217 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
....+++.+...+...++.+|||||||+|.++..+++. +..+|+++|+|+ |++.|+++++..+.. .++.++++|+
T Consensus 48 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~ 122 (340)
T 2fyt_A 48 RTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLE--DTITLIKGKI 122 (340)
T ss_dssp HHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCT--TTEEEEESCT
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCC--CcEEEEEeeH
Confidence 34556677777666778889999999999999999876 235899999996 999999887655432 5899999999
Q ss_pred CCCCCCCCcccEEEecc---cccCcccHHHHHHHHHhcccCCCEEE
Q 025144 133 LDLPFSDCFFDAITMGY---GLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
.++++++++||+|++.. .+.+..++..++..+.++|||||.++
T Consensus 123 ~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 123 EEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 99888778999999876 45555678889999999999999987
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=144.11 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh---ccCCCeeEEEc
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK---ACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 130 (257)
.....+.+...+...++.+|||||||+|.++..+++..++..+|+|+|+|+.|++.|++++..... ....++.++++
T Consensus 706 ~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG 785 (950)
T 3htx_A 706 SKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785 (950)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred HHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence 334455555666556788999999999999999998743447999999999999999987653211 12257999999
Q ss_pred cCCCCCCCCCcccEEEecccccCcccHH--HHHHHHHhcccCCCEEEEEeecC
Q 025144 131 DALDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 131 d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|+.++++++++||+|++..+++|+++.. .+++++.++|||| .+++.+++.
T Consensus 786 Da~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp CTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred chHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9999988889999999999999998754 5899999999999 777777654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=127.61 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCC-hhHHHHH---HhhhhhhhhccCCCeeEEEccCCCCCCC-CCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS-KNQLSMA---SSRQDLVSKACYKNIEWVEGDALDLPFS-DCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~ 142 (257)
.++.+|||||||+|..+..+++. .++.+|+|+|+| +.|++.| +++....+ ..++.+.++|..+++.. .+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~~~~d~v 98 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPFELKNIA 98 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCGGGTTCE
T ss_pred CCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhhhccCeE
Confidence 56779999999999999999876 467899999999 6777766 66654433 25899999999987521 1445
Q ss_pred cEEEecccccC-----cccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 143 DAITMGYGLRN-----VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 143 D~v~~~~~l~~-----~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
|.|.+++.... ..+...++++++++|||||.+++................... . ...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~----------~-~~~------- 160 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLP----------L-LSK------- 160 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-------------------------CCH-------
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCC----------C-CCh-------
Confidence 55555443221 123467899999999999999884322211100000000000 0 000
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.++..+++.++++++||++.+...+.
T Consensus 161 ---~~~~~~el~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 161 ---AYFLSEQYKAELSNSGFRIDDVKELD 186 (225)
T ss_dssp ---HHHHSHHHHHHHHHHTCEEEEEEEEC
T ss_pred ---hhcchHHHHHHHHHcCCCeeeeeecC
Confidence 01122469999999999988877654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=127.91 Aligned_cols=113 Identities=19% Similarity=0.372 Sum_probs=95.9
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+...+...++.+|||+|||+|.++..+++.+++..+++++|+|+.+++.|+++++..+.. .++.+.++|+.+. +
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD--DRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT--TTEEEECSCGGGC-C
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC--CceEEEECchhhc-c
Confidence 345666778888999999999999999999998767889999999999999999998765432 3599999999864 5
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++||+|++ +.+++..+++++.++|+|||.+++..
T Consensus 159 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 159 EEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp CCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 6788999998 34567789999999999999998865
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=131.57 Aligned_cols=111 Identities=21% Similarity=0.315 Sum_probs=91.6
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 138 (257)
.+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++.+++.++++++.. +. .++.+.++|+.+ +++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~---~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI---GNVRTSRSDIAD-FIS 176 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC---TTEEEECSCTTT-CCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC---CcEEEEECchhc-cCc
Confidence 4555667788899999999999999999988556789999999999999999988654 31 589999999988 555
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++||+|++ +.+++..+++++.++|||||.+++.+.
T Consensus 177 ~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 678999998 456778899999999999999988763
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=135.60 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+++.+.......++.+|||+|||+|.++..+++. +..+|+++|+| ++++.|+++.+..+.. .++.++++|+.
T Consensus 51 ~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~--~~v~~~~~d~~ 125 (349)
T 3q7e_A 51 TLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLD--HVVTIIKGKVE 125 (349)
T ss_dssp HHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCT--TTEEEEESCTT
T ss_pred HHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCC--CcEEEEECcHH
Confidence 4445555555444567889999999999999999887 34599999999 5999999988765433 46999999999
Q ss_pred CCCCCCCcccEEEecccc---cCcccHHHHHHHHHhcccCCCEEEE
Q 025144 134 DLPFSDCFFDAITMGYGL---RNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l---~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
++++++++||+|++..+. .+.+++..++..+.++|||||.++.
T Consensus 126 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 126 EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred HccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 988888999999987653 3446789999999999999999864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=134.44 Aligned_cols=111 Identities=10% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc---CCCeeEEEccCC------CC--C
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC---YKNIEWVEGDAL------DL--P 136 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~~------~~--~ 136 (257)
+++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|+++....+... ..++.+.+.|+. ++ +
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 35789999999999877766654 35699999999999999999876532110 002567788772 21 2
Q ss_pred CCCCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 FSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++++||+|+|.+++|++ ++...++++++++|||||.+++.+++
T Consensus 125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 125 FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 456899999999999875 45689999999999999999887765
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=122.17 Aligned_cols=104 Identities=24% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFF 142 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 142 (257)
...++.+|||+|||+|.++..+++.+++..+++++|+|+.+++.++++.+.. .++.++++|+.+.. ..+++|
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCCc
Confidence 4667889999999999999999988766679999999999999998877543 58999999998732 123689
Q ss_pred cEEEecccccCcccH-HHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNVVDK-RKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~~~~-~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+|++... .++. ..++.++.++|||||.+++.
T Consensus 145 D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 145 DVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998654 2333 44599999999999999887
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=126.80 Aligned_cols=108 Identities=21% Similarity=0.148 Sum_probs=86.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 140 (257)
.+.+.++.+|||+|||+|.++..+++.+++..+++++|+|+.+++.+.++.+.. .++.++.+|+.+. +..++
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCC
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCC
Confidence 345677889999999999999999998766679999999999887777665432 5899999999873 34467
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+||+|++... .......++.++.++|||||.+++..
T Consensus 147 ~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 147 MVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8999998654 22233556888999999999998853
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=122.43 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=91.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 145 (257)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..+. .+++++++|+.+.. +++++||+|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~i 117 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGL---SGATLRRGAVAAVVAAGTTSPVDLV 117 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTC---SCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEEccHHHHHhhccCCCccEE
Confidence 46789999999999999988775 345899999999999999999866542 48999999998753 446889999
Q ss_pred EecccccCc-ccHHHHHHHHHh--cccCCCEEEEEeecC
Q 025144 146 TMGYGLRNV-VDKRKALEESFR--VLKPGSRISVLDFNK 181 (257)
Q Consensus 146 ~~~~~l~~~-~~~~~~l~~~~~--~Lk~gG~l~~~~~~~ 181 (257)
+++..+++. ++....+..+.+ +|+|||.+++.....
T Consensus 118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 118 LADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred EECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 999888775 678899999999 999999998876543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-17 Score=127.02 Aligned_cols=139 Identities=16% Similarity=0.216 Sum_probs=107.5
Q ss_pred HHhhhCCC-CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--C
Q 025144 61 AVSWSGAK-TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 137 (257)
Q Consensus 61 ~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 137 (257)
+..+.... ++.+|||+|||+|..+..+++.. + .+|+++|+++.+++.|++++...+.. .++.++++|+.+.. +
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~~--~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQLE--DQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTCT--TTEEEECSCGGGGGGTS
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCCc--ccEEEEECcHHHhhhhh
Confidence 44455667 78899999999999999999873 3 39999999999999999998765433 47999999998865 4
Q ss_pred CCCcccEEEecccccCc--------------------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhh
Q 025144 138 SDCFFDAITMGYGLRNV--------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN 197 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~--------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 197 (257)
++++||+|+++..+... .+...+++.+.++|||||.+++....
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------- 178 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------- 178 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------
Confidence 56899999997665433 23467899999999999999875311
Q ss_pred hhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 198 VVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
....++.+.+++.||........
T Consensus 179 -------------------------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -------------------------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------------------------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -------------------------HHHHHHHHHHHHCCCceEEEEEe
Confidence 13457778888999987776544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=126.68 Aligned_cols=113 Identities=21% Similarity=0.335 Sum_probs=96.5
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~ 137 (257)
..+...+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++++.. + ..++.+..+|+.+.++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhcCC
Confidence 44556677888999999999999999999998767789999999999999999987654 3 2689999999998767
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++++||+|++. .+++..+++++.++|+|||.+++...
T Consensus 163 ~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 163 EEAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 77889999983 45677899999999999999988763
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-17 Score=124.13 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=88.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 145 (257)
.++.+|||||||+|.++..+++.. |+.+++|+|+|+.+++.|+++....+. .++.++++|+.+++ +++++||.|
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~---~nv~~~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence 356799999999999999999884 778999999999999999998765432 58999999998764 667889999
Q ss_pred EecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+... ...+++.+.++|||||.+++..
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 98765443321 3678999999999999998764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=125.69 Aligned_cols=147 Identities=9% Similarity=0.090 Sum_probs=106.0
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
+.+.+.++..+..+..... ......+.+..++...++.+|||+|||+|..+..+++.++++.+|+++|+++.+++
T Consensus 23 ~~v~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~ 97 (221)
T 3u81_A 23 QSVLEAIDTYCTQKEWAMN-----VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAA 97 (221)
T ss_dssp HHHHHHHHHHHHHHTCGGG-----CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHhhhcCcCcc-----cCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHH
Confidence 4455566666554443211 11222233333334446779999999999999999987655789999999999999
Q ss_pred HHHhhhhhhhhccCCCeeEEEccCCCC-C-CC----CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 109 MASSRQDLVSKACYKNIEWVEGDALDL-P-FS----DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
.|+++++..+.. .+++++++|..+. + .+ .++||+|++....++..+....+..+ ++|||||.+++.+...+
T Consensus 98 ~a~~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 98 ITQQMLNFAGLQ--DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP 174 (221)
T ss_dssp HHHHHHHHHTCG--GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred HHHHHHHHcCCC--CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence 999998765543 4799999998542 2 22 26899999988887777667788888 99999999988766544
Q ss_pred C
Q 025144 183 T 183 (257)
Q Consensus 183 ~ 183 (257)
.
T Consensus 175 ~ 175 (221)
T 3u81_A 175 G 175 (221)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=125.73 Aligned_cols=137 Identities=22% Similarity=0.234 Sum_probs=107.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++. + .+|+++|+|+.+++.++++....+. .+.+..+|..+. +++++||+|+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~----~v~~~~~d~~~~-~~~~~fD~Vv 189 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV----RPRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC----CCEEEESCHHHH-GGGCCEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCC----cEEEEECChhhc-CcCCCCCEEE
Confidence 456789999999999999998876 3 3999999999999999998765431 288888888762 3457899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++...+ ....++..+.++|||||.+++...... +.+
T Consensus 190 ~n~~~~---~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------------------~~~ 225 (254)
T 2nxc_A 190 ANLYAE---LHAALAPRYREALVPGGRALLTGILKD-----------------------------------------RAP 225 (254)
T ss_dssp EECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCcHH---HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------------------CHH
Confidence 876544 357889999999999999988754321 346
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
++.+.++++||++++.... +.|..++++|
T Consensus 226 ~v~~~l~~~Gf~~~~~~~~--~~W~~l~~~k 254 (254)
T 2nxc_A 226 LVREAMAGAGFRPLEEAAE--GEWVLLAYGR 254 (254)
T ss_dssp HHHHHHHHTTCEEEEEEEE--TTEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEecc--CCeEEEEEEC
Confidence 8889999999999887664 3356666665
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-17 Score=132.12 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=106.3
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
......+|+.+...+..............+.+.+...+...++.+|||||||+|.++..+++. +..+|+++|+|+ ++
T Consensus 9 ~~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~ 85 (348)
T 2y1w_A 9 ESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MA 85 (348)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HH
T ss_pred cccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HH
Confidence 344445555444333222222223345556677777777778889999999999999999876 345999999996 88
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEE
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+.++++++..+.. .++.++.+|+.+++++ ++||+|++..+++++. +....+.++++.|||||.+++.
T Consensus 86 ~~a~~~~~~~~l~--~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 86 QHAEVLVKSNNLT--DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp HHHHHHHHHTTCT--TTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred HHHHHHHHHcCCC--CcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9898887654432 5799999999987655 6799999998877763 4677888999999999999754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=128.31 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=109.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-hccCCCeeEEEccCCCCCC--CCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDLPF--SDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~~~--~~~~~D~ 144 (257)
.++.+|||||||+|..+..+++. .+..+++++|+|+.+++.+++++.... ....+++.++.+|+.+... ++++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 45679999999999999999876 346799999999999999999874311 1112689999999877542 4678999
Q ss_pred EEecccccCcccH----HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 145 ITMGYGLRNVVDK----RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 145 v~~~~~l~~~~~~----~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|++....+..+.. ..+++.++++|||||.+++...+....
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~------------------------------------ 216 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD------------------------------------ 216 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC------------------------------------
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc------------------------------------
Confidence 9997665543322 688999999999999998764321000
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeee-----cCceeEEEeeeC
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYEL-----SGGLMGNLVATR 257 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~-----~~g~~~~~~~~k 257 (257)
.....++.+.++++||..+..+.. ..|.+..++|.|
T Consensus 217 -~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 217 -LELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp -HHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 012367888999999988876643 256777777754
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=118.60 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=94.3
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
......+...+...++.+|||+|||+|..+..+++.. .+++++|+|+.+++.+++++...+.. .++.+.++|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG--DNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC--TTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCC--cceEEEecCHHH
Confidence 4455566666778888999999999999999998762 79999999999999999987654422 478999999876
Q ss_pred CCCCC-CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LPFSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.++. ++||+|++..+++ +...+++.+.++|+|||.+++...
T Consensus 94 -~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp -HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEec
Confidence 2222 5899999987765 458899999999999999988764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-17 Score=132.04 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh-------hhhccCCCee
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-------VSKACYKNIE 126 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~~~~~~ 126 (257)
.......++..+.+.++.+|||||||+|..+..++... +..+++|+|+|+.+++.|+++.+. .+.. ..++.
T Consensus 158 ~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVe 235 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYT 235 (438)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeE
Confidence 33444556667788899999999999999999998874 334699999999999999875432 1110 15799
Q ss_pred EEEccCCCCCCCC--CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 127 WVEGDALDLPFSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 127 ~~~~d~~~~~~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
++++|+.++++++ +.+|+|+++..+ +.++....|.+++++|||||.|++.+...+.
T Consensus 236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 236 LERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp EEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred EEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 9999999876543 469999997765 4578888899999999999999987655443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=116.71 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
......+...+...++.+|||+|||+|..+..+++ +..+++++|+|+.+++.++++.+..+. .++.++++|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~ 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI---KNCQIIKGRAED 94 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC---CSEEEEESCHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEECCccc
Confidence 34455566666777888999999999999999986 467999999999999999998865442 479999999987
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++++++||+|++..+ .+...+++.+.++ |||.+++...
T Consensus 95 -~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 95 -VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp -HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred -cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 555678999999887 6678899999988 9999988764
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=122.95 Aligned_cols=140 Identities=20% Similarity=0.245 Sum_probs=107.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++.. .. +|+++|+|+.+++.++++.+..+.. .++.++++|+.++.. +++||+|+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~~~--~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNKVE--DRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEECCHHHhcc-cCCccEEE
Confidence 3567899999999999999999883 33 7999999999999999988655432 458999999998765 67899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
+... .+...++..+.++|||||.+++.+....... .....+
T Consensus 198 ~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------------------~~~~~~ 238 (278)
T 2frn_A 198 MGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------------------PREPFE 238 (278)
T ss_dssp ECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------------------TTTTHH
T ss_pred ECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------------------cccHHH
Confidence 8654 2346788899999999999988776531100 011346
Q ss_pred HHHHHHHHcCceeeE-----EeeecCcee
Q 025144 227 DLEKLALEIGFSRAK-----HYELSGGLM 250 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~-----~~~~~~g~~ 250 (257)
++.+.++++||++.. ...+..+.+
T Consensus 239 ~i~~~~~~~G~~~~~~~~~~v~~~~p~~~ 267 (278)
T 2frn_A 239 TFKRITKEYGYDVEKLNELKIKRYAPGVW 267 (278)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHcCCeeEEeeeEEEEecCCCce
Confidence 788899999998776 455555443
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=125.88 Aligned_cols=112 Identities=23% Similarity=0.328 Sum_probs=93.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...++.+|||+|||+|.++..+++.+++..+++++|+|+.+++.++++++..+.. .++.+..+|+.+. ++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI--ERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG--GGEEEECCCGGGC-CS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--CCEEEEECCHHHc-cc
Confidence 34555667788899999999999999999998666789999999999999999987654422 4789999999875 55
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++||+|++. .+++..+++++.++|+|||.+++.+
T Consensus 179 ~~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 179 EKDVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp CCSEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred CCccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 6789999983 4567789999999999999998876
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=130.12 Aligned_cols=117 Identities=23% Similarity=0.241 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+++.+.......++.+|||+|||+|.++..+++. +..+|+++|+| .+++.|+++++..+.. .++.++++|+.
T Consensus 23 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~--~~i~~~~~d~~ 97 (328)
T 1g6q_1 23 TLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFS--DKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCT--TTEEEEESCTT
T ss_pred HHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCC--CCEEEEECchh
Confidence 4445555555555567789999999999999998876 33589999999 6999999887654432 57999999999
Q ss_pred CCCCCCCcccEEEeccc---ccCcccHHHHHHHHHhcccCCCEEE
Q 025144 134 DLPFSDCFFDAITMGYG---LRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
++++++++||+|++..+ +.+...+..++..+.++|||||.++
T Consensus 98 ~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 98877789999998754 3344568889999999999999986
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=126.44 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=104.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCC---CCcc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFS---DCFF 142 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~~~ 142 (257)
++.+|||+|||+|.++..+++.. ++.+++++|+|+.|++.|++++...+.. .++.++++|+.+. +++ +++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS--DLIKVVKVPQKTLLMDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCC--ccEEEEEcchhhhhhhhhhcccCCcc
Confidence 56799999999999999998875 4679999999999999999998655432 3599999997652 333 2689
Q ss_pred cEEEecccccCcc---------------cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCC
Q 025144 143 DAITMGYGLRNVV---------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207 (257)
Q Consensus 143 D~v~~~~~l~~~~---------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (257)
|+|+++..++... ....++..++++|||||.+.+.+. .......+ ..+ .+...
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~------~~~~~~~~-----l~~-~g~~~ 209 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR------IIHDSLQL-----KKR-LRWYS 209 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHH------HHHHHHHH-----GGG-BSCEE
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH------HHHHHHhc-----ccc-eEEEE
Confidence 9999986665432 112457788999999998755421 11111111 000 00000
Q ss_pred chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCc-eeEEEee
Q 025144 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG-LMGNLVA 255 (257)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g-~~~~~~~ 255 (257)
.. .....+.+++.++++++||+.++......| ...++++
T Consensus 210 ~~---------~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g~~~~~~~~ 249 (254)
T 2h00_A 210 CM---------LGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALA 249 (254)
T ss_dssp EE---------ESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEE
T ss_pred EC---------CCChhHHHHHHHHHHHcCCCceEEEEEecCCceEEEEE
Confidence 00 001223478999999999999988877554 3444443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-16 Score=120.86 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=90.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CC--CCCcc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PF--SDCFF 142 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~--~~~~~ 142 (257)
...++.+|||||||+|..+..+++.++++.+|+++|+++.+++.|+++++..+.. .++.++.+|+.+. +. ..++|
T Consensus 60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD--QRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHTCCSCCCC
T ss_pred hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHhcCCCCCe
Confidence 4456789999999999999999988754789999999999999999998765543 4799999998762 22 13489
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|+|++... ..+....++++.++|||||.+++.+...
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 138 DLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 99998653 4466789999999999999998876543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=128.39 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=90.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----ccCCCeeEEEccCCCCC----CC-
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----ACYKNIEWVEGDALDLP----FS- 138 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~d~~~~~----~~- 138 (257)
.++.+|||+|||+|..+..+++. +..+++++|+|+.|++.++++....+. ....++.++++|+.+.+ ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 46779999999999999999875 467999999999999999998754320 01137899999999865 43
Q ss_pred -CCcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 -DCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+++||+|++.+++|+. +++..++++++++|||||.+++..++.
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 4589999999999987 346789999999999999998887653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=119.61 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=95.3
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.+++++...+. .++.+..+|..+.
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDL---HNVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC---CceEEEECCcccC
Confidence 34455666677888999999999999999999987 47999999999999999998865442 4799999999886
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..++++||+|++..+++++++ .+.++|||||.+++....
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 555688999999999999875 588999999999887644
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-17 Score=120.53 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+..+|||+|||+|-++..++.. .|+.+|+++|+|+.|++.+++++...+.. .++.+ .|.... .+.++||+|++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~-~p~a~~~A~Di~~~~leiar~~~~~~g~~--~~v~~--~d~~~~-~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGKLKTT--IKYRF--LNKESD-VYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCS-SCCCEEEEECSCHHHHHHHHHHHHHSCCS--SEEEE--ECCHHH-HTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ccEEE--eccccc-CCCCCcChhhH
Confidence 55779999999999999999877 47889999999999999999998765432 24444 565543 35688999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..++|++++....+.++++.|+|||.++-..
T Consensus 122 ~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 122 LKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999877788889999999999986554
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-16 Score=121.11 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=91.6
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh---hhhccCCCeeEEEccCCCC--
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---VSKACYKNIEWVEGDALDL-- 135 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~d~~~~-- 135 (257)
+..+....++.+|||+|||+|.++..++++. +..+++++|+++.+++.|++++.. .+.. .++.++++|+.+.
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~--~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS--ARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTG--GGEEEEECCTTCCHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCc--ceEEEEeCCHHHHhh
Confidence 3344566677899999999999999999984 667999999999999999999865 3322 3699999999886
Q ss_pred -----CCCCCcccEEEecccccCc------------------ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 -----PFSDCFFDAITMGYGLRNV------------------VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 -----~~~~~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+++++||+|+++..+... .+...+++.+.++|||||.+++..
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2456889999998544322 236788999999999999998753
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=122.95 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C--CCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--FSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v 145 (257)
++.+|||||||+|..+..+++.. |+..|+|+|+|+.+++.|+++....+. .++.++++|+.++ + ++++++|.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l---~nv~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL---SNLRVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC---SSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHcCCCChheE
Confidence 56799999999999999999884 778999999999999999998765443 5899999998874 2 568899999
Q ss_pred EecccccCcccH--------HHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVDK--------RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~~--------~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+.... ..+++.+.++|||||.+++.+
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 998654443221 359999999999999998765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=125.03 Aligned_cols=122 Identities=21% Similarity=0.252 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+...+.......++.+|||+|||+|.++..++...++..+++|+|+|+.+++.|+++++..+. .++.+.++|+.
T Consensus 188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~---~~i~~~~~D~~ 264 (354)
T 3tma_A 188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL---SWIRFLRADAR 264 (354)
T ss_dssp CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC---TTCEEEECCGG
T ss_pred CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC---CceEEEeCChh
Confidence 344556667777788889999999999999999998854568999999999999999999876543 37999999999
Q ss_pred CCCCCCCcccEEEecccccCcc--------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 134 DLPFSDCFFDAITMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++.+.+.||+|+++..+.... ....+++.+.++|||||.+++.+
T Consensus 265 ~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 265 HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9876667799999977654321 13678999999999999998875
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-17 Score=131.02 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+.. .++.++++|+.+++ ++++||+|++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIA--DKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred cCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--cCeEEEECChHHhc-ccCCCCEEEE
Confidence 46789999999999999999986 479999999999999999998765432 47999999998865 4678999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+.++++..+....+.+++++|+|||.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 151 SPPWGGPDYATAETFDIRTMMSPDGFEI 178 (241)
T ss_dssp CCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred CCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence 9999998877767888999999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=122.65 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred CCCeEEEecCCCCh----hHHHHHHHhCC---CceEEEEeCChhHHHHHHhhhhhh----------------------h-
Q 025144 69 TGDNVLDVCCGSGD----LSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLV----------------------S- 118 (257)
Q Consensus 69 ~~~~vLdiG~G~G~----~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~----------------------~- 118 (257)
++.+|+|+|||||. ++..+++.++. +.+|+|+|+|+.|++.|++..... .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999998 55666666532 369999999999999999864100 0
Q ss_pred -----hccCCCeeEEEccCCCCCCC-CCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEE
Q 025144 119 -----KACYKNIEWVEGDALDLPFS-DCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 119 -----~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.....++.+.+.|+.+.+++ .++||+|+|.++++++++. .++++++++.|+|||.|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 00013689999999886554 5789999999999999754 78999999999999999763
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-16 Score=125.05 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=95.3
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+...+...++.+|||+|||+|..+..+++.+++..+|+++|+|+.+++.++++++..+. .++.++++|..+++.
T Consensus 107 s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~ 183 (315)
T 1ixk_A 107 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGE 183 (315)
T ss_dssp HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGG
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccc
Confidence 34445566788889999999999999999999865567999999999999999999876543 479999999988654
Q ss_pred CCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 138 SDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 138 ~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+++||+|++... ++..++ ...+++++.++|||||.+++.+.+.
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 4568999998533 322222 1578999999999999998877554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=126.74 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=98.3
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+...+.++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.+++++...+.....++.+...|+.
T Consensus 207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~-~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~ 285 (375)
T 4dcm_A 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285 (375)
T ss_dssp CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT
T ss_pred ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHH-CCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh
Confidence 3344566777777777789999999999999999998 467899999999999999999987654322236888999998
Q ss_pred CCCCCCCcccEEEecccccCcc-----cHHHHHHHHHhcccCCCEEEEEee
Q 025144 134 DLPFSDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+ .+++++||+|+++..+++.. ....+++++.++|||||.++++..
T Consensus 286 ~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 286 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp T-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 8 45668999999999888532 234789999999999999988653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=114.60 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=104.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.+++.+|+|||||+|.++..+++. ++..+|+++|+++.+++.|+++++..+.. .++.+..+|..+...+.++||+|+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~--~~I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLT--SKIDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCT--TTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhccccccccCEEE
Confidence 456789999999999999999987 46678999999999999999998776543 579999999988654444799988
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
+.++-. +-...++....+.|+++|.+++... ...+
T Consensus 96 iaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------------------~~~~ 130 (230)
T 3lec_A 96 ICGMGG--RLIADILNNDIDKLQHVKTLVLQPN-------------------------------------------NRED 130 (230)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------------------SCHH
T ss_pred EeCCch--HHHHHHHHHHHHHhCcCCEEEEECC-------------------------------------------CChH
Confidence 755433 2356788899999999999876532 1347
Q ss_pred HHHHHHHHcCceeeEEee
Q 025144 227 DLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~ 244 (257)
.+++.|.+.||.+++..-
T Consensus 131 ~lr~~L~~~Gf~i~~E~l 148 (230)
T 3lec_A 131 DLRKWLAANDFEIVAEDI 148 (230)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEE
Confidence 888999999999887553
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=121.82 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=95.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~~~ 137 (257)
..+...+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.+++++... +. ...++.+..+|+.+.++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCCcEEEEECchHhcCC
Confidence 45556667888899999999999999999987667789999999999999999987654 20 01589999999988777
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++++||+|++. .+++..+++++.++|+|||.+++...
T Consensus 168 ~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 168 PDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 67889999983 34667889999999999999988764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=117.41 Aligned_cols=116 Identities=20% Similarity=0.147 Sum_probs=94.6
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|..+..+++..++..+++++|+|+.+++.+++++...+. .++.+..+|....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~ 140 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY---DNVIVIVGDGTLG 140 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEESCGGGC
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence 3444566667788889999999999999999999865557999999999999999998765432 4689999998653
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
...+++||+|++..+++++. .++.++|||||.+++....
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 22357899999999999886 3789999999999887643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=126.90 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=96.8
Q ss_pred HHHHHHHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 55 RIWKRMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 55 ~~~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
+.+.+.+...+ ...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+ .++.++.+|+
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~----~~v~~~~~D~ 289 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANA----LKAQALHSDV 289 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTT----CCCEEEECST
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEcch
Confidence 33444444443 2346779999999999999999986 4699999999999999999986543 3589999999
Q ss_pred CCCCCCCCcccEEEecccccC-----cccHHHHHHHHHhcccCCCEEEEEee
Q 025144 133 LDLPFSDCFFDAITMGYGLRN-----VVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+...++++||+|+++..+++ .++...+++++.++|||||.+++...
T Consensus 290 ~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 290 DEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 987666689999999999887 45678899999999999999988753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=130.10 Aligned_cols=132 Identities=19% Similarity=0.156 Sum_probs=95.0
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCC------CChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCG------SGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G------~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.|++.+..|+.............+.+.+ ..+. .++.+||||||| +|..+..+++.+.|+.+|+++|+|+.|.
T Consensus 183 ~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL-~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~ 260 (419)
T 3sso_A 183 DLSELSSRYFTPKFGFLHWFTPHYDRHF-RDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH 260 (419)
T ss_dssp CHHHHHHHTTCTTBSSSCBCHHHHHHHH-GGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG
T ss_pred cHHHHHHHhCCCcccccchHHHHHHHHH-Hhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh
Confidence 4556666664432110111223333333 3333 345799999999 7777777777655788999999999972
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCC------CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFS------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.. .++++++++|..++++. +++||+|++.. .|++.+....|++++++|||||.+++.++.
T Consensus 261 ------~~------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 261 ------VD------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ------GC------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ------hc------CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 11 16899999999987665 68899999864 577788899999999999999999998766
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=124.05 Aligned_cols=148 Identities=19% Similarity=0.183 Sum_probs=88.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~ 146 (257)
.++.+|||||||+|.++..+++. + ..+|+++|+|+.|++.++++..........++.+.. .|+.. ..+|.+.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~ 108 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----GRPSFTS 108 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----CCCSEEE
T ss_pred CCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----CCCCEEE
Confidence 45679999999999999999887 2 249999999999999887754221100001222222 22221 1234444
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
+..++.++ ..++++++++|||||.+++.. . +......... ...+.... ...+..+.+
T Consensus 109 ~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~---p~~e~~~~~~---------~~~G~~~d------~~~~~~~~~ 165 (232)
T 3opn_A 109 IDVSFISL---DLILPPLYEILEKNGEVAALI--K---PQFEAGREQV---------GKNGIIRD------PKVHQMTIE 165 (232)
T ss_dssp ECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--C---HHHHSCHHHH---------C-CCCCCC------HHHHHHHHH
T ss_pred EEEEhhhH---HHHHHHHHHhccCCCEEEEEE--C---cccccCHHHh---------CcCCeecC------cchhHHHHH
Confidence 44444433 678999999999999998853 1 1111000000 00000000 011223778
Q ss_pred HHHHHHHHcCceeeEEeee
Q 025144 227 DLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~ 245 (257)
++.++++++||++......
T Consensus 166 ~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 166 KVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHHTEEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEc
Confidence 9999999999998877654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=116.57 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=94.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---CCCc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 141 (257)
++..++.+|||+|||. + .+|+|+.|++.|+++.. .++.+.++|+.++++ ++++
T Consensus 8 ~g~~~g~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS----------------S-PVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp TTCCTTSEEEEEECTT----------------S-CHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSC
T ss_pred cCCCCCCEEEEecCCc----------------e-eeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCC
Confidence 3567889999999986 1 28999999999998863 358999999998776 7889
Q ss_pred ccEEEecccccCc-ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 142 FDAITMGYGLRNV-VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 142 ~D~v~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
||+|++..+++++ +++..++++++++|||||.+++.+........ . .
T Consensus 64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----------------------~---------~ 111 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN-----------------------N---------S 111 (176)
T ss_dssp EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS-----------------------S---------S
T ss_pred EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc-----------------------c---------c
Confidence 9999999999999 89999999999999999999885432111000 0 0
Q ss_pred ccCCHHHHHHHHHHcCc
Q 025144 221 EFLTGKDLEKLALEIGF 237 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf 237 (257)
...+.+++.++|+++||
T Consensus 112 ~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 112 KVKTASKLCSALTLSGL 128 (176)
T ss_dssp SSCCHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHCCC
Confidence 12467899999999999
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=123.95 Aligned_cols=115 Identities=25% Similarity=0.362 Sum_probs=94.9
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|.++..+++..+...+|+++|+|+++++.++++++..+. .++.+..+|..+.
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~---~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEECChhhc
Confidence 3445566667788899999999999999999998853346799999999999999998865443 4699999999875
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..++++||+|++..+++++. +.+.+.|||||.+++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 44457899999999999886 467889999999988753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=114.13 Aligned_cols=128 Identities=19% Similarity=0.142 Sum_probs=101.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC-cccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC-FFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~v 145 (257)
.+++.+|||||||+|.++..+++. ++..+|+++|+++.+++.|+++++..+.. .++.+..+|..+. ++.+ +||+|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~--~~i~~~~~d~l~~-l~~~~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLK--EKIQVRLANGLAA-FEETDQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT--TTEEEEECSGGGG-CCGGGCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEECchhhh-cccCcCCCEE
Confidence 456789999999999999999987 46679999999999999999998776543 4799999999652 2223 69999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
++..+-. .-...++......|+++|.+++... ...
T Consensus 89 viaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------------------~~~ 123 (225)
T 3kr9_A 89 TIAGMGG--RLIARILEEGLGKLANVERLILQPN-------------------------------------------NRE 123 (225)
T ss_dssp EEEEECH--HHHHHHHHHTGGGCTTCCEEEEEES-------------------------------------------SCH
T ss_pred EEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECC-------------------------------------------CCH
Confidence 8755422 2257889999999999999877432 134
Q ss_pred HHHHHHHHHcCceeeEEe
Q 025144 226 KDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~ 243 (257)
+.+++.|.+.||.+++..
T Consensus 124 ~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 124 DDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp HHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 688899999999988755
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=114.94 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=102.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.+++.+|||||||+|.++..+++. ++..+|+++|+++.+++.|+++++..+.. .++.+..+|..+...++++||+|+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~--~~I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLT--EQIDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT--TTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEecchhhccCccccccEEE
Confidence 456789999999999999999987 45668999999999999999998776543 469999999987544334699998
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
+..+-. .-...++....+.|+++|.+++... ...+
T Consensus 96 iagmGg--~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------------------------~~~~ 130 (244)
T 3gnl_A 96 IAGMGG--TLIRTILEEGAAKLAGVTKLILQPN-------------------------------------------IAAW 130 (244)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------------------SCHH
T ss_pred EeCCch--HHHHHHHHHHHHHhCCCCEEEEEcC-------------------------------------------CChH
Confidence 754432 2356788899999999999977531 1346
Q ss_pred HHHHHHHHcCceeeEEe
Q 025144 227 DLEKLALEIGFSRAKHY 243 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~ 243 (257)
.+++.|.+.||.+++..
T Consensus 131 ~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 131 QLREWSEQNNWLITSEA 147 (244)
T ss_dssp HHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEE
Confidence 88899999999987644
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-15 Score=121.93 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=89.7
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--------ccCCCeeEEE
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------ACYKNIEWVE 129 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------~~~~~~~~~~ 129 (257)
...++..+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.|++++...+. ....++.+..
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34455566788899999999999999999999876668999999999999999998865320 0015799999
Q ss_pred ccCCCC--CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 130 GDALDL--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 130 ~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|+.+. ++++++||+|++.. .++...+.++.++|+|||.+++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999886 45567899999853 2344588999999999999987664
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=116.27 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=90.8
Q ss_pred HHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 58 KRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 58 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
.+.+...+. ..++.+|||+|||+|..+..+++. +..+++++|+|+.+++.++++++..+.. .++.++.+|+.+.
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAE--NRFTLLKMEAERAI 94 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCG--GGEEEECSCHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECcHHHhH
Confidence 344444444 566789999999999999999876 3469999999999999999988655432 4789999998773
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHH--hcccCCCEEEEEeecC
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~~~~ 181 (257)
+..+++||+|++...++ .......++.+. ++|+|||.+++.....
T Consensus 95 ~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 33346799999987653 234566677776 9999999998876554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=119.70 Aligned_cols=111 Identities=20% Similarity=0.297 Sum_probs=85.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh---hccCCCeeEEEccCCC-CC--CCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS---KACYKNIEWVEGDALD-LP--FSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~d~~~-~~--~~~~ 140 (257)
..++.+|||||||+|.++..+++.. ++..++|+|+|+.|++.|+++++... .....++.++++|+.+ ++ ++++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 3456799999999999999999884 67899999999999999998765321 1123689999999987 55 6788
Q ss_pred cccEEEecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++|.|++.+...+... ...+++.+.++|||||.+++..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9999998665433211 1478999999999999998765
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=125.10 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=96.7
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+.+...+...++.+|||+|||+|.++..+++. ++..+++++|+|+.+++.+++++...+ ....++.+|..+.
T Consensus 183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~d~~~~ 257 (343)
T 2pjd_A 183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAANG----VEGEVFASNVFSE 257 (343)
T ss_dssp HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTT
T ss_pred HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhC----CCCEEEEcccccc
Confidence 34556666665556779999999999999999988 466799999999999999999886543 3467888998764
Q ss_pred CCCCCcccEEEecccccC-----cccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLRN-----VVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
. +++||+|+++.++|+ .++...++++++++|||||.+++....
T Consensus 258 ~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 258 V--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp C--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred c--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 3 678999999999885 345788999999999999999887644
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=119.80 Aligned_cols=100 Identities=29% Similarity=0.431 Sum_probs=86.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++.+ ++.+++++|+|+.+++.++++. .++.+..+|..++++++++||+|++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcchhhCCCCCCceeEEEE
Confidence 567899999999999999999875 5679999999999999998875 5789999999988877889999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.++.. .++++.++|||||.+++.++....
T Consensus 155 ~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 155 IYAPC-------KAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp ESCCC-------CHHHHHHHEEEEEEEEEEEECTTT
T ss_pred eCChh-------hHHHHHHhcCCCcEEEEEEcCHHH
Confidence 76532 478999999999999998876543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-15 Score=116.65 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=89.9
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeC-ChhHHHHHHhhh-----hhhhhc--cCCCee
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF-SKNQLSMASSRQ-----DLVSKA--CYKNIE 126 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~-s~~~~~~a~~~~-----~~~~~~--~~~~~~ 126 (257)
..+.+.+.......++.+|||+|||+|.++..+++. + ..+|+++|+ |+.+++.++++. +..+.. ...++.
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~ 142 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK 142 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence 334444554444456789999999999999988875 2 348999999 899999999987 322110 002678
Q ss_pred EEEccCCCCC--C----CCCcccEEEecccccCcccHHHHHHHHHhccc---C--CCEEEEE
Q 025144 127 WVEGDALDLP--F----SDCFFDAITMGYGLRNVVDKRKALEESFRVLK---P--GSRISVL 177 (257)
Q Consensus 127 ~~~~d~~~~~--~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk---~--gG~l~~~ 177 (257)
+...|..+.. + ++++||+|++..++++.++...+++.+.++|+ | ||.+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred EEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 8877655421 1 35789999999999999999999999999999 9 9987664
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=117.72 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=86.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCc-ccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF-FDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~v 145 (257)
++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|+++++..+.. ..++.++++|+.+.. .++++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-Q-AKKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSSLDFLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc-c-CCEEEEEECCHHHHHHHHHHHHHhCCC-ccceEEEECCHHHHHHhhccCCCCCEE
Confidence 5679999999999999987766 2 358999999999999999988654320 037899999987643 23578 9999
Q ss_pred EecccccCcccHHHHHHHH--HhcccCCCEEEEEeecC
Q 025144 146 TMGYGLRNVVDKRKALEES--FRVLKPGSRISVLDFNK 181 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~--~~~Lk~gG~l~~~~~~~ 181 (257)
++...++ ..+....++.+ .++|+|||.+++.....
T Consensus 130 ~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 130 FLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 9988754 55677888888 67899999998876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=114.91 Aligned_cols=120 Identities=17% Similarity=0.105 Sum_probs=91.7
Q ss_pred HHHHHHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 57 WKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
+.+.+...+ ...++.+|||+|||+|..+..+++. +..+++++|+|+.+++.++++....+.. +++.++++|+.+.
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEP--EKFEVRKMDANRA 106 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCC--cceEEEECcHHHH
Confidence 344444444 3456789999999999999988875 3469999999999999999988655422 4799999998763
Q ss_pred C----CCCCcccEEEecccccCcccHHHHHHHH--HhcccCCCEEEEEeecC
Q 025144 136 P----FSDCFFDAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~Lk~gG~l~~~~~~~ 181 (257)
. .++++||+|++...++ ..+....+..+ .++|+|||.+++.....
T Consensus 107 ~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 2 1257899999987754 34566777777 88999999998876554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=116.28 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=92.4
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|..+..+++. ..+++++|+|+.+++.++++.... .++.++.+|+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~ 128 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLG 128 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH---cCEEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCcccc
Confidence 44455666677788899999999999999999987 279999999999999999987543 2789999999873
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
...+++||+|++..+++++.+ .+.++|+|||.+++.....
T Consensus 129 ~~~~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred cccCCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEEcCC
Confidence 324578999999999998863 6889999999998876543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=125.04 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 51 FGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
......+++.+.+.....++++|||||||+|.++...++. + -.+|+++|.|+ |++.|++.++..+.. .++.++++
T Consensus 65 ~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~-~~~~a~~~~~~n~~~--~~i~~i~~ 139 (376)
T 4hc4_A 65 RVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASA-IWQQAREVVRFNGLE--DRVHVLPG 139 (376)
T ss_dssp HHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-THHHHHHHHHHTTCT--TTEEEEES
T ss_pred HHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChH-HHHHHHHHHHHcCCC--ceEEEEee
Confidence 3456666676665544557889999999999998877765 2 24899999986 889998887765543 67999999
Q ss_pred cCCCCCCCCCcccEEEec---ccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 131 DALDLPFSDCFFDAITMG---YGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 131 d~~~~~~~~~~~D~v~~~---~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
|++++.++ +++|+|++- ..+.+-.....++....+.|||||.++-
T Consensus 140 ~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 140 PVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 99998776 789999983 3344445678888889999999998863
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=116.77 Aligned_cols=117 Identities=8% Similarity=0.151 Sum_probs=91.5
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 136 (257)
..+....+..++.+|||||||+|..+..+++.++++.+++++|+++++++.|+++++..+.. ..++.++++|..+..
T Consensus 46 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~~i~~~~gda~~~l~~ 124 (221)
T 3dr5_A 46 TTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS-PSRVRFLLSRPLDVMSR 124 (221)
T ss_dssp HHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHGGG
T ss_pred HHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cCcEEEEEcCHHHHHHH
Confidence 33444444444559999999999999999998766789999999999999999998765421 037999999987642
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++++||+|++... ..+....++.+.++|||||.+++.+.
T Consensus 125 ~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 125 LANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp SCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred hcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 33688999998754 34567789999999999999987543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-15 Score=122.32 Aligned_cols=149 Identities=22% Similarity=0.229 Sum_probs=112.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+...+.... ..++.+|||+|||+|.++..++.. ++..+++|+|+|+.|++.|++++...+.. .++.+.++|+.+
T Consensus 204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~-~~~~~v~g~Dis~~~l~~A~~n~~~~gl~--~~i~~~~~D~~~ 279 (373)
T 3tm4_A 204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALR-RYSGEIIGIEKYRKHLIGAEMNALAAGVL--DKIKFIQGDATQ 279 (373)
T ss_dssp HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHT-TCCSCEEEEESCHHHHHHHHHHHHHTTCG--GGCEEEECCGGG
T ss_pred HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCC--CceEEEECChhh
Confidence 34445555555 678889999999999999999987 34458999999999999999998765532 479999999999
Q ss_pred CCCCCCcccEEEecccccCc-------cc-HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccC
Q 025144 135 LPFSDCFFDAITMGYGLRNV-------VD-KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 206 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~-------~~-~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (257)
++.++++||+|+++..+... .+ ...+++.+.++| +|.++++..
T Consensus 280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------- 330 (373)
T 3tm4_A 280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------- 330 (373)
T ss_dssp GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------
T ss_pred CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------
Confidence 88777899999998765432 12 256788888888 555544431
Q ss_pred CchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEE
Q 025144 207 GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 253 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~ 253 (257)
+.+.+++.+++.||+..+......|...+.
T Consensus 331 -----------------~~~~~~~~~~~~G~~~~~~~~~~nG~l~~~ 360 (373)
T 3tm4_A 331 -----------------EKKAIEEAIAENGFEIIHHRVIGHGGLMVH 360 (373)
T ss_dssp -----------------CHHHHHHHHHHTTEEEEEEEEEEETTEEEE
T ss_pred -----------------CHHHHHHHHHHcCCEEEEEEEEEcCCEEEE
Confidence 346777889999999998888776655443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-15 Score=116.43 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=94.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeE-EEccCCCCC---CCCCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW-VEGDALDLP---FSDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~~~D 143 (257)
.++.+|||+|||||.++..+++. ...+|+++|+|+.|++.+.++- +++.. ...++..+. ++..+||
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~~--------~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQD--------DRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHTC--------TTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred ccccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC--------cccceecccCceecchhhCCCCCCC
Confidence 35679999999999999999876 2459999999999998854432 23322 223333322 3344699
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec-CCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhcc
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN-KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 222 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (257)
+|++..+++++ ..+|.+++++|||||.+++.... ...... .. +..+... ....+.
T Consensus 154 ~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~--------------~~-~~~G~vr------d~~~~~ 209 (291)
T 3hp7_A 154 FASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAGRE--------------QI-GKNGIVR------ESSIHE 209 (291)
T ss_dssp EEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGG--------------GC-C-CCCCC------CHHHHH
T ss_pred EEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccChh--------------hc-CCCCccC------CHHHHH
Confidence 99998887754 77899999999999999886311 000000 00 0000000 011123
Q ss_pred CCHHHHHHHHHHcCceeeEEeeec
Q 025144 223 LTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
...+++.++++++||++......+
T Consensus 210 ~~~~~v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 210 KVLETVTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCEEEEEEECC
Confidence 467899999999999988776653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=111.50 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=87.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------C
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F 137 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~ 137 (257)
...++.+|||+|||+|..+..+++.++++.+++++|+++ +++. .++.+..+|+.+.+ +
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------VGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------TTEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------CcEEEEEcccccchhhhhhhccC
Confidence 367788999999999999999999876668999999999 6431 47899999998865 6
Q ss_pred CCCcccEEEecccccCcccH-----------HHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 138 SDCFFDAITMGYGLRNVVDK-----------RKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
++++||+|++..++++..+. ..+++++.++|+|||.+++..+....
T Consensus 85 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 67899999999888877654 68899999999999999987766543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-15 Score=123.97 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=92.4
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH-------HhhhhhhhhccCCCeeEEE
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA-------SSRQDLVSKACYKNIEWVE 129 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a-------~~~~~~~~~~~~~~~~~~~ 129 (257)
+...+...+...++.+|||||||+|..+..+++.. +..+|+|+|+++.+++.| ++++...+.. ..++.+++
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~ 307 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSL 307 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEE
Confidence 33445566677888999999999999999999876 345899999999999988 6665543310 15889998
Q ss_pred ccCCCC--CC--CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 130 GDALDL--PF--SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 130 ~d~~~~--~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+|.... ++ ..++||+|+++..+ +.+++...|+++.++|||||.+++.+..
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 765432 11 24689999987766 4467888899999999999999887543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=118.98 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=93.0
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~ 136 (257)
...+..++...++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|+++++..+.. .++.++.+|+.+. +
T Consensus 60 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~ 136 (232)
T 3ntv_A 60 LDLIKQLIRMNNVKNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE--NQVRIIEGNALEQFE 136 (232)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTT-CTTCEEEEEECCHHHHHHHHHHHHHTTCT--TTEEEEESCGGGCHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECCHHHHHH
Confidence 344444444557789999999999999999985 35789999999999999999998765432 4899999999774 2
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+++||+|++... ..+...+++.+.++|||||.+++.+..
T Consensus 137 ~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 137 NVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp HHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred hhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 22578999997653 445678999999999999999875543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.1e-15 Score=113.77 Aligned_cols=115 Identities=27% Similarity=0.289 Sum_probs=90.9
Q ss_pred HHHhhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--ccCCCeeEEEccCCCC
Q 025144 60 MAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEGDALDL 135 (257)
Q Consensus 60 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d~~~~ 135 (257)
.+...+. ..++.+|||+|||+|..+..+++..++..+|+++|+++.+++.++++....+. ....++.+..+|....
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 3444443 67788999999999999999998875557999999999999999988765321 0015899999999865
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
...+++||+|++...++++. +++.++|||||.+++....
T Consensus 146 ~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred cccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 54467899999988887653 5788999999999887643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=115.42 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=85.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~ 147 (257)
++.+|||+|||+|..+..++... ..+|+++|+|+.|++.++++++..+. .++.++++|+.+ ++..+++||+|++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 56799999999999999877762 34899999999999999998865442 489999999876 3445678999999
Q ss_pred cccccCcccHHHHHHHHHh--cccCCCEEEEEeec
Q 025144 148 GYGLRNVVDKRKALEESFR--VLKPGSRISVLDFN 180 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~~~~ 180 (257)
...++ .......++.+.+ +|+|||.+++....
T Consensus 129 ~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 129 DPPFR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 87754 4566778888865 59999999876644
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-16 Score=124.14 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=92.7
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CC-
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS- 138 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~- 138 (257)
+..+....++.+|||||||+|..+..+++.++++.+|+++|+++.+++.|+++++..+.. .++.++.+|..+.. ..
T Consensus 52 l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~~~ 129 (242)
T 3r3h_A 52 MQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE--HKIKLRLGPALDTLHSLL 129 (242)
T ss_dssp HHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT--TTEEEEESCHHHHHHHHH
T ss_pred HHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHh
Confidence 333333445679999999999999999998755789999999999999999988765543 58999999987642 11
Q ss_pred ----CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 ----DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 ----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+++||+|++... ..+....++.+.++|||||.+++.+...
T Consensus 130 ~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 130 NEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp HHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred hccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 478999998764 4466788999999999999998876554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=117.54 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=90.8
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 138 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~ 138 (257)
+..+....++.+|||||||+|..+..+++.++++.+++++|+++.+++.+++++...+.. .++.++++|..+.. ++
T Consensus 50 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~ 127 (223)
T 3duw_A 50 LQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN--DRVEVRTGLALDSLQQIE 127 (223)
T ss_dssp HHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHH
Confidence 333334456789999999999999999988644789999999999999999998765432 46999999986531 11
Q ss_pred ---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 ---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.++||+|++... .+.....++.+.++|+|||.+++.+...
T Consensus 128 ~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 128 NEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp HTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred hcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 257999998765 3456789999999999999988765443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=118.23 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
....+...+...++.+|||+|||+|..+..+++.+ ++.+++++|+++.+++.|++++...+.. .++.++.+|..+.
T Consensus 42 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~ 118 (233)
T 2gpy_A 42 GMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLE--SRIELLFGDALQLG 118 (233)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCGGGSH
T ss_pred HHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECCHHHHH
Confidence 33444444445567899999999999999999985 5789999999999999999998665432 4799999999874
Q ss_pred CCC--CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFS--DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+.. +++||+|++....+ +...+++.+.++|+|||.+++.+..
T Consensus 119 ~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 119 EKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp HHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred HhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 222 47899999877643 6788999999999999999887544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=117.79 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=90.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-CC---
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-FS--- 138 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~--- 138 (257)
+....++.+|||+|||+|..+..+++.++++.+|+++|+++.+++.++++++..+.. .++.++++|..+. + ..
T Consensus 59 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~ 136 (225)
T 3tr6_A 59 LVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS--DKIGLRLSPAKDTLAELIHAG 136 (225)
T ss_dssp HHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHTTT
T ss_pred HHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeCCHHHHHHHhhhcc
Confidence 334446779999999999999999988644789999999999999999998765432 4699999998653 1 11
Q ss_pred -CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 -DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.++||+|++... ..+...+++.+.++|||||.+++.+...
T Consensus 137 ~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 137 QAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp CTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred CCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 178999997653 4467889999999999999998876543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=115.63 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=87.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
.++.+|||+|||+|..+..+++.++++.+++++|+|+.+++.++++++..+.. .++.++++|..+. +..++ ||+|+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI--DRVELQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG--GGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC--ceEEEEEecHHHHhccCCC-CCEEE
Confidence 35679999999999999999988643789999999999999999988655432 4799999998753 33346 99999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+... ..+...+++++.++|||||.+++.+...
T Consensus 132 ~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 132 MDCD---VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp EETT---TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred EcCC---hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 8743 4567889999999999999998765443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=116.56 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=86.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhh---hhccCCC----------------
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLV---SKACYKN---------------- 124 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~~---------------- 124 (257)
+...++.+|||+|||+|.++..+++.+ .+..+++++|+|+.+++.|++++... +.. .+
T Consensus 47 ~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 124 (250)
T 1o9g_A 47 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT--ARELERREQSERFGKPSY 124 (250)
T ss_dssp SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH--HHHHHHHHHHHHHCCHHH
T ss_pred cccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc--ccchhhhhhhhhcccccc
Confidence 333456799999999999999998872 14579999999999999999876543 211 11
Q ss_pred ---------ee-------------EEEccCCCCCC-----CCCcccEEEecccccCcc---------cHHHHHHHHHhcc
Q 025144 125 ---------IE-------------WVEGDALDLPF-----SDCFFDAITMGYGLRNVV---------DKRKALEESFRVL 168 (257)
Q Consensus 125 ---------~~-------------~~~~d~~~~~~-----~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~L 168 (257)
+. +.++|+.+... ..++||+|+++..+.... ....+++++.++|
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L 204 (250)
T 1o9g_A 125 LEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 204 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc
Confidence 56 99999887431 345899999987665543 2458899999999
Q ss_pred cCCCEEEEEeec
Q 025144 169 KPGSRISVLDFN 180 (257)
Q Consensus 169 k~gG~l~~~~~~ 180 (257)
+|||.+++....
T Consensus 205 kpgG~l~~~~~~ 216 (250)
T 1o9g_A 205 PAHAVIAVTDRS 216 (250)
T ss_dssp CTTCEEEEEESS
T ss_pred CCCcEEEEeCcc
Confidence 999999885433
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=113.49 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=91.1
Q ss_pred HHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhC----CCceEEEEeCChhHHHHHHhhhhhhhh--ccCCCeeEEEcc
Q 025144 60 MAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEGD 131 (257)
Q Consensus 60 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d 131 (257)
.+...+ ...++.+|||+|||+|..+..+++..+ +..+|+++|+++.+++.++++++..+. ....++.++.+|
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 148 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN 148 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence 344444 467788999999999999999998864 456999999999999999998765431 001589999999
Q ss_pred CCCCC----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 132 ALDLP----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 132 ~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+.. ...++||+|++...++++ ++.+.+.|||||.+++....
T Consensus 149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 149 IYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp GGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred hHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 98754 445789999999888865 36788999999999887543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=116.41 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+...+...++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.+..+.. .++.++++|+.
T Consensus 108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~--~~v~~~~~D~~ 183 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVS--DRFFVRKGEFL 183 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCT--TSEEEEESSTT
T ss_pred HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECcch
Confidence 3445555555544345679999999999999999988 6789999999999999999998765432 35999999998
Q ss_pred CCCCCCCcc---cEEEeccccc-----------Ccc--------cHHHHHHHHH-hcccCCCEEEEE
Q 025144 134 DLPFSDCFF---DAITMGYGLR-----------NVV--------DKRKALEESF-RVLKPGSRISVL 177 (257)
Q Consensus 134 ~~~~~~~~~---D~v~~~~~l~-----------~~~--------~~~~~l~~~~-~~Lk~gG~l~~~ 177 (257)
+. ++ ++| |+|+++.... |.+ +...+++++. +.|+|||.+++.
T Consensus 184 ~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 184 EP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred hh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 73 22 578 9999973322 111 1237899999 999999999763
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=112.97 Aligned_cols=114 Identities=22% Similarity=0.258 Sum_probs=91.5
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+...++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.++++++..+. .++.+..+|...
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~- 151 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-K-TDVYTIERIPELVEFAKRNLERAGV---KNVHVILGDGSK- 151 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-C-SCEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGG-
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEECCccc-
Confidence 344556666778888999999999999999999985 3 7999999999999999998865442 468999999732
Q ss_pred CCCC-CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 PFSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++++ .+||+|++..+++++.+ .+.+.|+|||.+++.....
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred CCCCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecC
Confidence 3333 35999999999888763 6888999999998876543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=116.99 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=89.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-C-----C
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F-----S 138 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~ 138 (257)
...++.+|||||||+|..+..+++.++++.+++++|+++.+++.++++++..+.. .++.++.+|..+. + + +
T Consensus 76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD--HKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHSGGG
T ss_pred HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCeEEEECCHHHHHHHHHhccCC
Confidence 3445679999999999999999998754789999999999999999998765432 5799999998753 2 1 1
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++||+|++... ..+....++.+.++|||||.+++.+..
T Consensus 154 ~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 154 HGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp TTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred CCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 478999998754 346788999999999999999876543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=127.57 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+...+...++.+|||||||+|.++..+++. +..+|+++|+|+ +++.|+++++..+.. .++.++.+|+.
T Consensus 143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~--~~v~~~~~d~~ 217 (480)
T 3b3j_A 143 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLT--DRIVVIPGKVE 217 (480)
T ss_dssp HHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCT--TTEEEEESCTT
T ss_pred HHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCC--CcEEEEECchh
Confidence 3444555555555567789999999999999988875 456999999998 999999887655432 58999999999
Q ss_pred CCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEE
Q 025144 134 DLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+++++ ++||+|++..+++++. +....+.++++.|||||.+++
T Consensus 218 ~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 218 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp TCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred hCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 87654 6899999987766653 456678889999999999974
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=115.65 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCCeEEEecCCCChhHHHHHHH---hCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CC-CCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PF-SDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~-~~~~ 141 (257)
++.+|||||||+|..+..+++. +.++.+|+++|+|+.+++.|+.. ..++.++++|..+. +. .+.+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--------~~~v~~~~gD~~~~~~l~~~~~~~ 152 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------MENITLHQGDCSDLTTFEHLREMA 152 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------CTTEEEEECCSSCSGGGGGGSSSC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--------CCceEEEECcchhHHHHHhhccCC
Confidence 4579999999999999999887 35678999999999998877621 15899999999884 43 2347
Q ss_pred ccEEEecccccCcccHHHHHHHHHh-cccCCCEEEEEee
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFR-VLKPGSRISVLDF 179 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~-~Lk~gG~l~~~~~ 179 (257)
||+|++... | .+....+.++.+ +|||||.+++.+.
T Consensus 153 fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 153 HPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 999998665 3 367889999997 9999999988664
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=112.13 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=84.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-C--CCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F--SDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~~D~ 144 (257)
++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+ .++.++++|+.+. + . .+++||+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~D~ 113 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTG----LGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHcC----CceEEEeccHHHHHHhhhccCCceEE
Confidence 6779999999999999999887 2359999999999999999886543 2789999998763 2 1 1247999
Q ss_pred EEecccccCcccHHHHHHHHH--hcccCCCEEEEEeecCCC
Q 025144 145 ITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLDFNKST 183 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~~~~~~ 183 (257)
|++..+++ .+....++.+. ++|+|||.+++.......
T Consensus 114 i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 114 AFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp EEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred EEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 99988765 45566677777 999999999887665433
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=113.04 Aligned_cols=110 Identities=20% Similarity=0.339 Sum_probs=85.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-----cCCCeeEEEccCCC-CC--CCC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-----CYKNIEWVEGDALD-LP--FSD 139 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~d~~~-~~--~~~ 139 (257)
.++.+|||||||+|.++..+++.. +..+++++|+|+.+++.++++++..... ...++.++++|+.+ ++ ++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 466799999999999999999884 6679999999999999999887543100 12589999999987 44 667
Q ss_pred CcccEEEecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 140 CFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++|.|++...-.+... ...++..+.++|+|||.+++..
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 88999986543222111 1589999999999999998853
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=111.80 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=89.3
Q ss_pred HHHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhCC-----CceEEEEeCChhHHHHHHhhhhhhhh--ccCCCeeEEE
Q 025144 59 RMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGS-----QGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVE 129 (257)
Q Consensus 59 ~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~ 129 (257)
..+...+ ...++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.+++++...+. ....++.+..
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 3444444 4677889999999999999999987532 25899999999999999998765431 0015899999
Q ss_pred ccCCCCCCCC-CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 130 GDALDLPFSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 130 ~d~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|..+ .+++ ++||+|++...++++. +++.+.|||||.+++...
T Consensus 152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 152 GDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 99987 3333 7899999999988765 678999999999987654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=114.66 Aligned_cols=118 Identities=15% Similarity=0.263 Sum_probs=93.7
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--- 137 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~--- 137 (257)
+...+...++.+|||+|||+|..+..+++.++...+|+++|+++.+++.++++++..+. .++.++++|..+++.
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLL 151 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHH
T ss_pred HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhh
Confidence 34456677889999999999999999998764447999999999999999999876543 489999999887543
Q ss_pred -CCCcccEEEecccccC------------------cccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 138 -SDCFFDAITMGYGLRN------------------VVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~~------------------~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..++||+|++...... ......+++++.+.|||||.+++.+.+.
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 2578999998633221 1345788999999999999998887654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-14 Score=109.60 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=91.8
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...++.+|||+|||+|..+..+++. ..+++++|+++.+++.++++....+.. .++.+...|+.+...+
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLG--KNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCC--TTEEEECSCTTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC--CcEEEEEcChhhcccC
Confidence 35556667788899999999999999999987 569999999999999999987654322 5789999999885435
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++||+|++. .+++...++++.++|+|||.+++...
T Consensus 156 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 156 EGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6789999973 44677889999999999999988764
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=114.04 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
..+.+|||||||+|..+..+++.. +..+++++|+|+.+++.+++++...... ..++++++.+|..+. +..+++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 445799999999999999998763 5679999999999999999987642100 026899999998663 2235789999
Q ss_pred EecccccCc--ccH--HHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNV--VDK--RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~--~~~--~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++......- ... ..+++.+++.|+|||.+++..
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 986532211 111 788999999999999998764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=112.06 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
+.+.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++...... ..++++++.+|..+. +..+++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 346799999999999999998763 4579999999999999999987542111 126899999998763 2335789999
Q ss_pred EecccccCccc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++....+..+. ...+++.++++|+|||.+++..
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99654432211 2678999999999999997764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=108.68 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---------
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 136 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 136 (257)
..++.+|||+|||+|.++..+++.+++ ..+|+++|+|+.. . .+++.++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~--------~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------P--------IPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------C--------CTTCEEEECCTTTTSSCCC-----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------C--------CCCceEEEccccchhhhhhccccc
Confidence 467789999999999999999998632 5799999999831 1 157899999998765
Q ss_pred ----------------CCCCcccEEEecccccCc----ccH-------HHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 ----------------FSDCFFDAITMGYGLRNV----VDK-------RKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ----------------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+++++||+|++...+++. .+. ..+++.+.++|||||.+++..+..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 456789999998877763 222 237889999999999998866543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=103.65 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=77.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++.+..+ .++.++++|+.+++ ++||+|
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~D~v 116 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEFN---SRVDIV 116 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGCC---CCCSEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcC----CCEEEEECchHHcC---CCCCEE
Confidence 3556789999999999999999876 2 3489999999999999999886543 27999999998863 589999
Q ss_pred EecccccCcc--cHHHHHHHHHhcc
Q 025144 146 TMGYGLRNVV--DKRKALEESFRVL 168 (257)
Q Consensus 146 ~~~~~l~~~~--~~~~~l~~~~~~L 168 (257)
+++..++... ....+++.+.+++
T Consensus 117 ~~~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 117 IMNPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp EECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred EEcCCCccccCCchHHHHHHHHHhc
Confidence 9998887764 3457788888887
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=115.62 Aligned_cols=120 Identities=19% Similarity=0.128 Sum_probs=89.0
Q ss_pred HHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 57 WKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.+..+...+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..+.. ..++.++++|+.++
T Consensus 140 ~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~-~~~v~~i~~D~~~~ 215 (332)
T 2igt_A 140 HWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDAMKF 215 (332)
T ss_dssp HHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEECcHHHH
Confidence 3333444432 345679999999999999999876 359999999999999999998655421 01489999998774
Q ss_pred CC----CCCcccEEEecccc----------cCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PF----SDCFFDAITMGYGL----------RNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~----~~~~~D~v~~~~~l----------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.. ..++||+|++.... +...+...+++.+.++|+|||.+++....
T Consensus 216 l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 216 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 31 14689999995442 12345678999999999999998776544
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-14 Score=112.75 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
..+.+|||||||+|..+..+++.. +..+++++|+|+.+++.+++++...... ..++++++.+|+.+. +..+++||+|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 345799999999999999998763 4579999999999999999987542111 126899999998653 3335789999
Q ss_pred EecccccCcc-----cHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~-----~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.....+.. ....+++.++++|+|||.+++..
T Consensus 168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9854322121 12688999999999999998764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=113.87 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=85.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CCC-CCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~v 145 (257)
.++.+|||+| |+|.++..++.. ++..+++++|+|+.+++.|+++++..+. .++.++++|+.+ ++. .+++||+|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEE
Confidence 4578999999 999999999877 4557999999999999999999876542 379999999988 553 34689999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++..++... ...+++++.++|||||.+++..
T Consensus 246 i~~~p~~~~~-~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 246 ITDPPETLEA-IRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp EECCCSSHHH-HHHHHHHHHHTBCSTTCEEEEE
T ss_pred EECCCCchHH-HHHHHHHHHHHcccCCeEEEEE
Confidence 9987665443 5788999999999999553433
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-14 Score=117.98 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=97.4
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
-...+...+...++.+|||+|||+|..+..+++.++...+++++|+++.+++.++++++..+. .++.++++|..+.+
T Consensus 247 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~ 323 (450)
T 2yxl_A 247 ASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAP 323 (450)
T ss_dssp HHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCS
T ss_pred hhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcc
Confidence 334455566788889999999999999999999864447999999999999999999876543 47999999998865
Q ss_pred --CCCCcccEEEec------ccccCcccH----------------HHHHHHHHhcccCCCEEEEEeecCC
Q 025144 137 --FSDCFFDAITMG------YGLRNVVDK----------------RKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 137 --~~~~~~D~v~~~------~~l~~~~~~----------------~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+++++||+|++. .+++..++. ..++.++.+.|||||.+++.+.+..
T Consensus 324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 444789999973 233333332 5789999999999999998876653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-15 Score=113.51 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=88.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCC--C
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSD--C 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~--~ 140 (257)
..++.+|||+|||+|..+..+++.++++.+++++|+++.+++.|+++++..+.. .++.++.+|..+. +..+ +
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA--EKISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHHHHHHHHTSSSCC
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcCCCC
Confidence 345679999999999999999988644679999999999999999988655432 4799999997542 2222 7
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+||+|++... .++....++.+.++|+|||.+++.+...
T Consensus 148 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 148 EFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp CEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred CcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 8999998754 3467889999999999999998876443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-14 Score=111.40 Aligned_cols=111 Identities=17% Similarity=0.090 Sum_probs=85.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC-CCCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~ 144 (257)
.+++.+|||||||+|..+..+++. .+..+++++|+++.+++.+++++...... ..++++++.+|..+. +..+++||+
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 345679999999999999999876 35679999999999999999987543111 126899999998763 222578999
Q ss_pred EEecccccCcc--cH--HHHHHHHHhcccCCCEEEEEe
Q 025144 145 ITMGYGLRNVV--DK--RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~~--~~--~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|++....+..+ .. ..+++.++++|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 99865433222 22 689999999999999998764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-15 Score=115.24 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=90.6
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C--
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-- 136 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 136 (257)
.+...+...++.+|||+|||+|..+..+++.+++..+++++|+++.+++.+++++...+.. .++.++.+|..+. +
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~~~~~ 128 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE--NKIFLKLGSALETLQVL 128 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCEEEEECCHHHHHHHH
Confidence 3334444456789999999999999999998644679999999999999999988654432 3589999987652 1
Q ss_pred ------------CCC--CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 ------------FSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ------------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++ ++||+|++... .++....++.+.++|+|||.+++.+..
T Consensus 129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 129 IDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp HHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 78999998754 345678899999999999999887644
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=112.60 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=85.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEe
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~ 147 (257)
..+|||||||+|..+..+++.+ ++.+++++|+++.+++.+++++.... .++++++.+|..++ ..++++||+|++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR---APRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC---TTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC---CCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 3499999999999999999974 67799999999999999999875321 26899999998764 244678999998
Q ss_pred cccccCc-c-c--HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 148 GYGLRNV-V-D--KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 148 ~~~l~~~-~-~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
....+.. + . ...+++.++++|+|||++++.....
T Consensus 166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 6543322 1 1 2689999999999999998776543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=112.32 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=88.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-C-----C
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F-----S 138 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~ 138 (257)
...++.+|||||||+|..+..+++.++++.+++++|+++.+++.++++++..+.. .++.++.+|..+. + + +
T Consensus 67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE--HKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHSTTC
T ss_pred HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhccCC
Confidence 3446679999999999999999998755789999999999999999998765432 4799999998753 1 1 2
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++||+|++... ..+....++.+.++|+|||.+++.+.
T Consensus 145 ~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 145 EGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 578999998643 34568899999999999999987654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=113.72 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC--CCCCCccc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL--PFSDCFFD 143 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~--~~~~~~~D 143 (257)
...+.+|||||||+|..+..+++. .+..+|+++|+|+.+++.|++++...... ..++++++.+|+.+. ..++++||
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~-~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 345679999999999999999876 35679999999999999999987542111 125899999998763 23457899
Q ss_pred EEEecccccC--ccc--HHHHHHHHHhcccCCCEEEEE
Q 025144 144 AITMGYGLRN--VVD--KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~--~~~--~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|++...... ..+ ...+++.++++|+|||.+++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9998654221 122 378999999999999999875
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=112.18 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=90.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
....++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.++++++..+. .++.++++|+.+.+. .++||+
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l---~~~~~~~~d~~~~~~-~~~~D~ 189 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKL---NNVIPILADNRDVEL-KDVADR 189 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTC---SSEEEEESCGGGCCC-TTCEEE
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEECChHHcCc-cCCceE
Confidence 345678899999999999999999884 456999999999999999998865443 478899999988733 578999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|++.... +...++..+.+.|+|||.+++.+...
T Consensus 190 Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9987654 56678899999999999999877654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=106.24 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=87.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+..+|||||||+|-++..+... .+..+|+++|+++.+++.+++++...+ .+..+...|....+ +.++||++++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~~~-p~~~~DvaL~ 204 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLEDR-LDEPADVTLL 204 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTTSC-CCSCCSEEEE
T ss_pred CCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeecccC-CCCCcchHHH
Confidence 44669999999999999998876 378899999999999999999987665 46888999988755 4578999999
Q ss_pred cccccCcccH--HHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDK--RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+-+++++++. ...+ ++...|+++|.++-.+
T Consensus 205 lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 205 LKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp TTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 9999999753 3445 8999999999986554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=113.09 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=86.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--ccCCCeeEEEccCCCC-CCCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEGDALDL-PFSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~ 144 (257)
+.+.+|||||||+|..+..+++.. +..+++++|+++.+++.+++++..... -..++++++.+|+.+. +..+++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 445799999999999999998863 567999999999999999998754211 0126899999998763 333578999
Q ss_pred EEecccccC---cc--c--HHHHHHHHHhcccCCCEEEEEe
Q 025144 145 ITMGYGLRN---VV--D--KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~---~~--~--~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|++....+. -+ . ...+++.++++|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999766544 11 1 3788999999999999998764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=113.12 Aligned_cols=110 Identities=16% Similarity=0.071 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
..+.+|||||||+|..+..+++. .+..+++++|+++.+++.|++++...... ..++++++.+|+.+. +..+++||+|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 34579999999999999999876 35679999999999999999987543100 126899999998763 2245789999
Q ss_pred EecccccCccc--H--HHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD--K--RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~--~--~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++....+.-+. . ..+++.++++|+|||.+++..
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98654221111 1 678999999999999998764
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=113.56 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=83.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC-CCCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~ 144 (257)
...+.+|||||||+|..+..+++. .+..+++++|+++.+++.|++++...... ..++++++.+|..+. +..+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 345679999999999999999876 35679999999999999999987542111 026899999998652 334578999
Q ss_pred EEecccccCcc----cHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|++....+..+ ....++++++++|+|||.+++...
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 99865433221 125689999999999999987653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=112.22 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=88.8
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCC--
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSD-- 139 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~-- 139 (257)
+....++.+|||+|||+|..+..+++.+++..+++++|+++.+++.++++++..+.. .++.++.+|..+. .+..
T Consensus 64 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 64 LARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE--HKIDLRLKPALETLDELLAAG 141 (229)
T ss_dssp HHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC--CeEEEEEcCHHHHHHHHHhcC
Confidence 334456779999999999999999987644679999999999999999988655432 5799999998653 1111
Q ss_pred --CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 140 --CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 140 --~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++||+|++... ..+....++.+.++|+|||.+++.+..
T Consensus 142 ~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 142 EAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp CTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 68999998654 345678899999999999999886644
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-15 Score=127.61 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~ 146 (257)
.+.+|||||||.|.++..+++. +++|+|+|.|+.+++.|+......+. .++.+.+++++++ ..++++||+|+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPD---FAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTT---SEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCC---CceEEEECCHHHHhhhccCCCccEEE
Confidence 4569999999999999999987 68999999999999999988765432 3789999999886 35578899999
Q ss_pred ecccccCcccHHHH--HHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNVVDKRKA--LEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~~~~~~~--l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|..+++|++++..+ +..+.+.|+++|..++.....
T Consensus 140 ~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 140 GLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp EESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred ECcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99999999876433 456677788887766665443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=101.95 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=72.6
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++. .++.++++|+.+++ ++||+|
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v 114 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTW 114 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEE
Confidence 4556789999999999999999876 3447999999999999999886 37899999998863 689999
Q ss_pred EecccccCccc--HHHHHHHHHhcc
Q 025144 146 TMGYGLRNVVD--KRKALEESFRVL 168 (257)
Q Consensus 146 ~~~~~l~~~~~--~~~~l~~~~~~L 168 (257)
+++..+++..+ ...+++++.+.+
T Consensus 115 ~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 115 IMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp EECCCC-------CHHHHHHHHHHE
T ss_pred EECCCchhccCchhHHHHHHHHHhc
Confidence 99999988854 356788888888
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-14 Score=117.12 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=94.4
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 137 (257)
..+...+...++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.++++++..+. .++.+.+.|..++. .
T Consensus 95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPH 171 (456)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhh
Confidence 3444556778899999999999999999999876567999999999999999999877654 47999999987754 2
Q ss_pred CCCcccEEEecccc------cCccc----------------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 138 SDCFFDAITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 138 ~~~~~D~v~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+++||+|++.... ..-++ ...+|..+.++|||||.|+..+.+.
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 35789999985432 11111 1267999999999999998877654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=108.70 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh--hh------ccCCCeeEEEccCCCC-CCC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV--SK------ACYKNIEWVEGDALDL-PFS 138 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~------~~~~~~~~~~~d~~~~-~~~ 138 (257)
..+.+|||||||+|..+..+++. +..+++++|+++.+++.|++++ .. +. ...++++++.+|..+. +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 45679999999999999999876 4569999999999999999987 32 11 0126899999998653 22
Q ss_pred CCcccEEEecccccCcc--c--HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVV--D--KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++||+|++....+.-+ . ...+++.++++|+|||.+++..
T Consensus 150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 57899999866532211 1 2678999999999999998764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=116.26 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=94.2
Q ss_pred HHHHhhhCCC--CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 59 RMAVSWSGAK--TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 59 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
......+... ++.+|||+|||+|..+..+++.+++...|+++|+|+.+++.++++++..+. .++.++++|..+++
T Consensus 105 ~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~ 181 (479)
T 2frx_A 105 MLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFG 181 (479)
T ss_dssp HHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHH
T ss_pred HHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhh
Confidence 3334455556 888999999999999999999875567999999999999999999876553 47999999998764
Q ss_pred C-CCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 137 F-SDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 137 ~-~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
. .+++||+|++... +...++ ...+|.++.++|||||.+++.+.+..
T Consensus 182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 2 3578999998422 222121 24679999999999999998876543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=106.70 Aligned_cols=100 Identities=15% Similarity=-0.078 Sum_probs=81.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.+.+|||||||+|..+..+++. + .+++++|+++.+++.|++++..... -..++++++.+|..+.. ++||+|+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii 144 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIF 144 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEE
Confidence 34579999999999999999877 4 7999999999999999988754210 01258999999998764 7899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.. .++..+++.++++|+|||.+++..
T Consensus 145 ~d~-----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 145 CLQ-----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ESS-----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECC-----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 862 355679999999999999998754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=113.64 Aligned_cols=123 Identities=18% Similarity=0.300 Sum_probs=97.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.....+...+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++++..+ .++.++++|..+
T Consensus 232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~ 306 (429)
T 1sqg_A 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRY 306 (429)
T ss_dssp CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTC
T ss_pred CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhh
Confidence 3444555566777888999999999999999999985 45799999999999999999987654 357899999988
Q ss_pred CC--CCCCcccEEEecc------cccCcccH----------------HHHHHHHHhcccCCCEEEEEeecCC
Q 025144 135 LP--FSDCFFDAITMGY------GLRNVVDK----------------RKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 135 ~~--~~~~~~D~v~~~~------~l~~~~~~----------------~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
.+ +++++||+|++.. ++++.++. ..++.++.+.|||||.+++.+.+..
T Consensus 307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 65 4557899999743 23333332 4789999999999999998876553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=108.49 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=73.3
Q ss_pred hCCCCCCeEEEecCCC------ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeE-EEccCCCCCC
Q 025144 65 SGAKTGDNVLDVCCGS------GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW-VEGDALDLPF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~------G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~d~~~~~~ 137 (257)
+.+.++.+|||+|||+ |. ..+++..++..+|+++|+|+. + .++.+ +++|+.++++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v--------~~v~~~i~gD~~~~~~ 120 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V--------SDADSTLIGDCATVHT 120 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B--------CSSSEEEESCGGGCCC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C--------CCCEEEEECccccCCc
Confidence 4567888999999955 55 555666554679999999997 1 36888 9999988765
Q ss_pred CCCcccEEEecccccC-----------cccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 138 SDCFFDAITMGYGLRN-----------VVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ++||+|+++...+. ......+++.+.++|||||.+++..+.
T Consensus 121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4 68999998654221 112357899999999999999886543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=99.93 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||||||+|-++..+. +...|+++|+++.+++.+++++...+ .+..+...|....+.+ ++||+|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g----~~~~~~v~D~~~~~~~-~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD----WDFTFALQDVLCAPPA-EAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT----CEEEEEECCTTTSCCC-CBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeecccCCCC-CCcchHHH
Confidence 567799999999999998877 56899999999999999999976554 5788999999886654 68999999
Q ss_pred cccccCccc-HHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVD-KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~-~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-++|++++ ......++...|+++|.++-..
T Consensus 175 lk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 175 FKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp ESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 999998863 2223338888999998875543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=115.79 Aligned_cols=122 Identities=14% Similarity=0.239 Sum_probs=94.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 137 (257)
..+...+...++.+|||+|||+|..+..+++.+++..+|+++|+|+.+++.++++++..+. . +.++++|..+++ .
T Consensus 91 ~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 91 QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEA 166 (464)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHH
T ss_pred HHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhh
Confidence 3344556778889999999999999999999875557999999999999999999876552 3 889999987754 2
Q ss_pred CCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 138 SDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 138 ~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
.+++||+|++... +...++ ...+|+.+.++|||||.|+..+.+....
T Consensus 167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e 235 (464)
T 3m6w_A 167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE 235 (464)
T ss_dssp HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh
Confidence 3578999996332 222222 1678999999999999998887665433
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=103.43 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.++++++..+.. .++.++++|..++.. .+.||.|+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~--~~v~~~~~D~~~~~~-~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVE--DRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCTTTCCC-CSCEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCcHHHhcc-ccCCCEEE
Confidence 457889999999999999999887 3468999999999999999998765543 579999999988753 57899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++... ....++..+.++||+||.+.+.++.
T Consensus 198 ~~~p~----~~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 198 MGYVV----RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ECCCS----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCCC----cHHHHHHHHHHHcCCCCEEEEEeee
Confidence 86542 2345677788899999998765543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=101.19 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=77.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCC--------ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE-EccCCCCC-
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQ--------GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-EGDALDLP- 136 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~--------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~- 136 (257)
+.++.+|||+|||+|.++..+++.+++. .+++++|+|+.. .. .++.++ ++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~--------~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PL--------EGATFLCPADVTDPRT 85 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CC--------TTCEEECSCCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cC--------CCCeEEEeccCCCHHH
Confidence 5678899999999999999999986432 799999999831 01 468888 88887642
Q ss_pred -------CCCCcccEEEecccccCc----ccH-------HHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -------FSDCFFDAITMGYGLRNV----VDK-------RKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+++++||+|++...++.. .+. ..+++++.++|||||.+++..+..
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 234689999997654432 222 478999999999999998877654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=106.98 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=87.6
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCC----ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQ----GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
...++.+|||+|||+|.++..+++.+... .+++|+|+++.+++.|+.+....+ .++.+.++|..... +.++
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g----~~~~i~~~D~l~~~-~~~~ 201 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----QKMTLLHQDGLANL-LVDP 201 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCTTSCC-CCCC
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC----CCceEEECCCCCcc-ccCC
Confidence 44567799999999999999998876322 689999999999999999876443 36889999987633 3578
Q ss_pred ccEEEecccccCcccH------------------HHHHHHHHhcccCCCEEEEEeec
Q 025144 142 FDAITMGYGLRNVVDK------------------RKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~------------------~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
||+|+++..+.+++.. ..++.++.+.|+|||.++++..+
T Consensus 202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 9999999887655321 25799999999999999887643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=104.33 Aligned_cols=113 Identities=22% Similarity=0.283 Sum_probs=84.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
....+.+...+...++.+|||||||+|.++..+++. +.+++++|+|+.+++.++++....+.. +++.++++|+.+
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVA--SKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTG--GGEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcceec
Confidence 334556666777788889999999999999999987 369999999999999999987543221 479999999998
Q ss_pred CCCCCCcccEEEecccccCcccH-HHHHH--------------HH--HhcccCCCEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDK-RKALE--------------ES--FRVLKPGSRI 174 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~-~~~l~--------------~~--~~~Lk~gG~l 174 (257)
.+++ +||+|+++..++...+. ..++. ++ +++++|||.+
T Consensus 89 ~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 89 TDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp SCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred ccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 7654 79999997665544322 12222 12 3588999965
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=107.85 Aligned_cols=107 Identities=18% Similarity=0.099 Sum_probs=76.5
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE--EccCCCCCCCCCcc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV--EGDALDLPFSDCFF 142 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~ 142 (257)
..+.++.+|||+|||+|.++..+++. .+|+++|+++ |+..+++...... ....++.++ ++|+.+++ +++|
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~-~~~~~v~~~~~~~D~~~l~--~~~f 141 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITE-SYGWNIVKFKSRVDIHTLP--VERT 141 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCC-BTTGGGEEEECSCCTTTSC--CCCC
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhh-ccCCCeEEEecccCHhHCC--CCCC
Confidence 44567889999999999999988865 5899999998 5433322110000 000268888 89998865 6789
Q ss_pred cEEEecccccCcccH----H---HHHHHHHhcccCCC--EEEEEeec
Q 025144 143 DAITMGYGLRNVVDK----R---KALEESFRVLKPGS--RISVLDFN 180 (257)
Q Consensus 143 D~v~~~~~l~~~~~~----~---~~l~~~~~~Lk~gG--~l~~~~~~ 180 (257)
|+|++..+ ++..+. . .+|..+.++||||| .+++..+.
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 99999876 443221 1 37899999999999 99887766
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=109.18 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=76.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE--EccCCCCCCCCCccc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV--EGDALDLPFSDCFFD 143 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D 143 (257)
...++.+|||+|||+|.++..+++. .+|+++|+++ |+..++++..... ....++.++ ++|+.+++ +++||
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~-~~~~~v~~~~~~~D~~~l~--~~~fD 150 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVE-TFGWNLITFKSKVDVTKME--PFQAD 150 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCC-CTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhh-hcCCCeEEEeccCcHhhCC--CCCcC
Confidence 3567889999999999999998865 5899999998 6433322210000 000268888 89998865 67899
Q ss_pred EEEecccccCcccH----H---HHHHHHHhcccCCC--EEEEEeec
Q 025144 144 AITMGYGLRNVVDK----R---KALEESFRVLKPGS--RISVLDFN 180 (257)
Q Consensus 144 ~v~~~~~l~~~~~~----~---~~l~~~~~~Lk~gG--~l~~~~~~ 180 (257)
+|++..+ +...+. . .+|+.+.++||||| .+++..+.
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9999876 433221 1 37899999999999 98887666
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=98.87 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=75.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-------C
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-------D 139 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~ 139 (257)
..++.+|||+|||+|.++..+++. ..+|+++|+++.. . .+++.++++|+.+.+.. .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~--------~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------E--------IAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------C--------CTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------c--------CCCeEEEEccccCHHHHHHHHHHhh
Confidence 467889999999999999999876 5799999998741 1 15899999999885411 1
Q ss_pred ----CcccEEEecccccCcc----c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 140 ----CFFDAITMGYGLRNVV----D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 140 ----~~~D~v~~~~~l~~~~----~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++||+|++........ + ....++.+.++|||||.+++..+..
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 4899999975433211 1 3567888999999999998776654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=106.14 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=81.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~ 146 (257)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..+. ...+.++|+.+.. ...+.||+|+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~----~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGL----RVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCHHHHHHTCCCCEEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCC----CCcEEEccHHHHHHHhcCCCCEEE
Confidence 35889999999999999999876 45699999999999999999876542 2356688887642 1134499999
Q ss_pred ecccccCc---------ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~---------~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+....... .+...++..+.++|+|||.+++.+.+.
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 87553221 234678899999999999998766543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=104.16 Aligned_cols=114 Identities=18% Similarity=0.344 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+...+...++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++.+..+. .++.++++|+.
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~f~~~d~~ 344 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLE 344 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTT
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEECCHH
Confidence 3445555666677777889999999999999999876 57999999999999999998865442 48999999998
Q ss_pred CC----CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 134 DL----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 134 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+. ++++++||+|+++..-... ..+++.+.+ ++|++.+++.
T Consensus 345 ~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 345 EDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEE
T ss_pred HHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEE
Confidence 73 2345689999986654433 245555543 6888877664
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=104.22 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=86.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCCC----CCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPF----SDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~~----~~~~~ 142 (257)
.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++..+. . .++.++++|+.+... ..++|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~~al~~a~~n~~~ngl~~--~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLDL--SKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCG--GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc--cceEEEECCHHHHHHHHHhcCCCC
Confidence 46789999999999999999876 2 35899999999999999999865442 2 378999999876421 14689
Q ss_pred cEEEecccc---------cCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 143 DAITMGYGL---------RNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 143 D~v~~~~~l---------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|+|++.... ....+...++..+.+.|+|||.+++.+..
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999997543 22245678899999999999999887644
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=109.39 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCC-CeeEEEccCCCC-C-C--CCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK-NIEWVEGDALDL-P-F--SDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~-~-~--~~~~~ 142 (257)
.++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.|+++++..+.. . ++.++++|+.+. + . ..++|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~--~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLD--MANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCC--CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCC--ccceEEEECCHHHHHHHHHHhCCCc
Confidence 56789999999999999999875 1348999999999999999998765432 2 799999998763 2 1 24589
Q ss_pred cEEEeccccc-----Ccc----cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 143 DAITMGYGLR-----NVV----DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 143 D~v~~~~~l~-----~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|+|++..... ... +...++..+.++|+|||.+++....
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999865442 222 3455778889999999999877644
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=104.70 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeC----ChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDC 140 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~ 140 (257)
.+.++.+|||+|||+|.++..+++. .+|+++|+ ++.+++.+. .+..+ .+++.++++ |+..++ .+
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG---WNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT---GGGEEEECSCCTTTSC--CC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC---CCCeEEEeccccccCC--cC
Confidence 3466789999999999999999865 47999999 564432111 11111 147899998 887764 56
Q ss_pred cccEEEeccccc---CcccHH---HHHHHHHhcccCCCEEEEEeecC
Q 025144 141 FFDAITMGYGLR---NVVDKR---KALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 141 ~~D~v~~~~~l~---~~~~~~---~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+||+|++..+++ +..+.. ..|..+.++|||||.+++..+..
T Consensus 148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 899999977653 222222 57888999999999987755443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-12 Score=102.88 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++.. ++ ...+|+++|+|+.+++.++++++..+.. .++.++++|+.+.. ++||+|++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~--~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLE--HKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECChHHhc---CCCcEEEE
Confidence 4678999999999999998 75 2579999999999999999998765432 47999999998864 78999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..... ...++..+.++|+|||.+++.++..
T Consensus 265 dpP~~----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 265 NLPKF----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCTTT----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCcHh----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 64322 2377888999999999998877654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=107.47 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=86.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC----CCCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----SDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D 143 (257)
.++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.++++++..+.. .++.++++|+.+... ..++||
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVE--DRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC--ccceEEECCHHHHHHHHHhhCCCCC
Confidence 36789999999999999999876 2358999999999999999998655432 379999999876421 246899
Q ss_pred EEEecccccCc---------ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 144 AITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 144 ~v~~~~~l~~~---------~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+|++....... .+...++..+.+.|+|||.+++.+.+.
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 99996543221 346778999999999999998877554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=99.19 Aligned_cols=91 Identities=24% Similarity=0.316 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.+.+...+...++.+|||||||+|.++..+++. ..+|+++|+++.+++.+++++... +++.++++|+.
T Consensus 35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~-----~~v~vi~gD~l 106 (295)
T 3gru_A 35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY-----NNIEIIWGDAL 106 (295)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC-----SSEEEEESCTT
T ss_pred CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC-----CCeEEEECchh
Confidence 3445566777778888899999999999999999987 469999999999999999987622 68999999999
Q ss_pred CCCCCCCcccEEEeccccc
Q 025144 134 DLPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~ 152 (257)
++++++.+||+|+++..++
T Consensus 107 ~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 107 KVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp TSCGGGSCCSEEEEECCGG
T ss_pred hCCcccCCccEEEEeCccc
Confidence 9877777899999876554
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-12 Score=100.70 Aligned_cols=109 Identities=27% Similarity=0.265 Sum_probs=79.0
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.+.+.+...+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+. +++.++++|+.+.
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~---~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY---NNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC---CCEEC----CCSS
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEECchhhC
Confidence 34555666677788889999999999999999875 46999999999999999998754322 5899999999887
Q ss_pred CCCCCcccEEEecccccCccc-HHHHH---------------HHHHhcccCCC
Q 025144 136 PFSDCFFDAITMGYGLRNVVD-KRKAL---------------EESFRVLKPGS 172 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~-~~~~l---------------~~~~~~Lk~gG 172 (257)
++ ++||+|+++...+.... ...++ +...++++++|
T Consensus 103 ~~--~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 103 VF--PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CC--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred Cc--ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 64 47999999766554322 12333 34567788876
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-11 Score=99.09 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC-------------------------------------CCce
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG-------------------------------------SQGK 96 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------------------------------------~~~~ 96 (257)
.+.+...++......++.+|||++||+|.+++.++.... +..+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 344556666777778889999999999999998877631 1157
Q ss_pred EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc----ccHHHHHHHHHhcccC--
Q 025144 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKP-- 170 (257)
Q Consensus 97 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~-- 170 (257)
|+|+|+++.+++.|++++...+.. .++.+.++|+.+++.+ ++||+|+++..+..- .+...+.+.+.+.||+
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~--~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVD--EYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCG--GGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999998765543 4799999999987654 689999998876532 2456677777777776
Q ss_pred CCEEEEEee
Q 025144 171 GSRISVLDF 179 (257)
Q Consensus 171 gG~l~~~~~ 179 (257)
|+.+++.+.
T Consensus 337 g~~~~iit~ 345 (385)
T 3ldu_A 337 NWSYYLITS 345 (385)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEEEC
Confidence 888877653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-11 Score=98.08 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-------------------------------------Cce
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-------------------------------------QGK 96 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------------------~~~ 96 (257)
.+.+...++......++..|||++||+|.+++.++..... ..+
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 3445566677777788899999999999999888765311 146
Q ss_pred EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc----ccHHHHHHHHHhcccC--
Q 025144 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKP-- 170 (257)
Q Consensus 97 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~-- 170 (257)
++|+|+++.|++.|++++...+.. .++.+.++|+.+++.+ ++||+|+++..+..- .+...+.+.+.+.||+
T Consensus 266 V~GvDid~~al~~Ar~Na~~~gl~--~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~ 342 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQNAVEAGLG--DLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP 342 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCT--TCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence 999999999999999998765543 4699999999987654 589999998765432 2345566666667766
Q ss_pred CCEEEEEee
Q 025144 171 GSRISVLDF 179 (257)
Q Consensus 171 gG~l~~~~~ 179 (257)
||.+++.+.
T Consensus 343 g~~~~iit~ 351 (393)
T 3k0b_A 343 TWSVYVLTS 351 (393)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEC
Confidence 888877653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-11 Score=94.95 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=89.1
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.++++++..+. .++.++++|+.++....
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~ 169 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSD 169 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTC
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCChHhcCccc
Confidence 344456778889999999999999999999876667999999999999999999876653 47999999998764321
Q ss_pred ---CcccEEEeccc------ccCcc-----------cH-------HHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 140 ---CFFDAITMGYG------LRNVV-----------DK-------RKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 140 ---~~~D~v~~~~~------l~~~~-----------~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
++||.|++... +..-+ +. ..+|....+.++ ||.++..+.+...
T Consensus 170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ 239 (309)
T ss_dssp GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence 57999997422 21111 11 245777777786 8988877665433
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-12 Score=111.09 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++..++.+... .++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.++++++..+.. ..++.++++|+.
T Consensus 527 ~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~aVD~s~~al~~a~~N~~~ngl~-~~~v~~i~~D~~ 600 (703)
T 3v97_A 527 HRIARRMLGQM---SKGKDFLNLFSYTGSATVHAGLG-G-ARSTTTVDMSRTYLEWAERNLRLNGLT-GRAHRLIQADCL 600 (703)
T ss_dssp GHHHHHHHHHH---CTTCEEEEESCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCC-STTEEEEESCHH
T ss_pred HHHHHHHHHHh---cCCCcEEEeeechhHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHH
Confidence 33444444433 35789999999999999998875 2 347999999999999999998765431 137999999998
Q ss_pred CC-CCCCCcccEEEecccc-----------cCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 134 DL-PFSDCFFDAITMGYGL-----------RNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 134 ~~-~~~~~~~D~v~~~~~l-----------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+. +...++||+|++.... ....+...++..+.++|+|||.+++....
T Consensus 601 ~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 601 AWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 73 3335789999986542 22345677899999999999999876544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=106.13 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC----CCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----SDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~ 144 (257)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++++..+. .++.++++|+.+... .+++||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~---~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC---CCceEEECCHHHHHHHHHhcCCCeeE
Confidence 6779999999999999999987 46899999999999999999865543 359999999876421 1468999
Q ss_pred EEecccccCc---------ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 145 ITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 145 v~~~~~l~~~---------~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|++....... .+...++..+.++|+|||.+++.+...
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986543221 345678999999999999998876543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=96.22 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-------------------------------------Cce
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-------------------------------------QGK 96 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------------------~~~ 96 (257)
.+.+...++......++..|||.+||+|.+++..+..... ..+
T Consensus 179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 3455666677777788899999999999999888765311 146
Q ss_pred EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc----ccHHHHHHHHHhcccC--
Q 025144 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKP-- 170 (257)
Q Consensus 97 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~-- 170 (257)
++|+|+++.|++.|++++...+.. .++.+.++|+.+++.+ ++||+|+++..+..- .+...+++.+.+.||+
T Consensus 259 v~GvDid~~al~~Ar~Na~~~gl~--~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~ 335 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKNAREVGLE--DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK 335 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999998766543 4699999999987754 589999998765422 3456677777777776
Q ss_pred CCEEEEEee
Q 025144 171 GSRISVLDF 179 (257)
Q Consensus 171 gG~l~~~~~ 179 (257)
||.+++.+.
T Consensus 336 g~~~~iit~ 344 (384)
T 3ldg_A 336 TWSQFILTN 344 (384)
T ss_dssp TSEEEEEES
T ss_pred CcEEEEEEC
Confidence 888877653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=103.35 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=104.7
Q ss_pred chhHHHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC------------C
Q 025144 28 SSERQELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG------------S 93 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~ 93 (257)
.+...+.|+.....+....... .+-..+...+.+...+...++.+|||+|||+|.++..+.+.+. +
T Consensus 128 ~d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~ 207 (445)
T 2okc_A 128 GDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLR 207 (445)
T ss_dssp SHHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhc
Confidence 4556666666554443221110 1111344556677777777788999999999999998887631 2
Q ss_pred CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc-----------------
Q 025144 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD----------------- 156 (257)
Q Consensus 94 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~----------------- 156 (257)
..+++|+|+++.+++.|+.++...+.. ..+..+.++|....+.. ++||+|+++..+.....
T Consensus 208 ~~~i~G~Ei~~~~~~lA~~nl~l~g~~-~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~ 285 (445)
T 2okc_A 208 DKALHGVDNTPLVVTLASMNLYLHGIG-TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNN 285 (445)
T ss_dssp HTTEEEEESCHHHHHHHHHHHHHTTCC-SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCH
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHhCCC-cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcch
Confidence 357999999999999999887543321 01678999998876543 48999999877665421
Q ss_pred HHHHHHHHHhcccCCCEEEEEee
Q 025144 157 KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 157 ~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...++.++.+.|||||.+.++.+
T Consensus 286 ~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 286 QLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCCEEEEEEC
Confidence 14789999999999999987764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=95.34 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.... +++.++++|+.+
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~D~~~ 87 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDILQ 87 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGGG
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC-----CCeEEEEChHHh
Confidence 445566667777778889999999999999999988 379999999999999999887532 589999999998
Q ss_pred CCCCC-CcccEEEeccc
Q 025144 135 LPFSD-CFFDAITMGYG 150 (257)
Q Consensus 135 ~~~~~-~~~D~v~~~~~ 150 (257)
+++++ ..| .|+++..
T Consensus 88 ~~~~~~~~~-~vv~nlP 103 (244)
T 1qam_A 88 FKFPKNQSY-KIFGNIP 103 (244)
T ss_dssp CCCCSSCCC-EEEEECC
T ss_pred CCcccCCCe-EEEEeCC
Confidence 87653 345 4555443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=102.46 Aligned_cols=112 Identities=23% Similarity=0.239 Sum_probs=85.2
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+.+...+...++.+|||+|||+|.++..+++++++..+++|+|+++.+++.| .++.++++|+.+.
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCGGGC
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEEeCChhhc
Confidence 3445555556555567999999999999999998864567999999999988765 3688999999876
Q ss_pred CCCCCcccEEEecccccCcc----------c-------------------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLRNVV----------D-------------------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~----------~-------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.. .++||+|+++..+.... + ...+++++.++|+|||.++++...
T Consensus 94 ~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 94 EP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred Cc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 43 46899999975443221 1 125688999999999999887654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=93.97 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=100.2
Q ss_pred CCeEEEecCCCChhHHHHHHH-------------h---CCCceEEEEeCC-----------hhHHHHHHhhhhhhhhccC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQ-------------V---GSQGKVIGLDFS-----------KNQLSMASSRQDLVSKACY 122 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~-------------~---~~~~~v~~~D~s-----------~~~~~~a~~~~~~~~~~~~ 122 (257)
.-+|+|+||++|..+..+... . .|..++...|+. +.+.+.+++.. +..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g~~-- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---GRK-- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---CCC--
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---cCC--
Confidence 468999999999999877765 1 245688899986 33333322211 100
Q ss_pred CCeeEEEccCCC---CCCCCCcccEEEecccccCcccHH---------------------------------------HH
Q 025144 123 KNIEWVEGDALD---LPFSDCFFDAITMGYGLRNVVDKR---------------------------------------KA 160 (257)
Q Consensus 123 ~~~~~~~~d~~~---~~~~~~~~D~v~~~~~l~~~~~~~---------------------------------------~~ 160 (257)
.+..++.+...+ -.+|++++|+|+++.+|||+.+.+ .+
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F 207 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF 207 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 134566665555 358899999999999999985432 12
Q ss_pred HHHHHhcccCCCEEEEEeecCCCc--h------hHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHH
Q 025144 161 LEESFRVLKPGSRISVLDFNKSTQ--P------FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 232 (257)
Q Consensus 161 l~~~~~~Lk~gG~l~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (257)
|+..++.|+|||.+++......+. . ....+.....++.+... ....+. ....+.+.++++.++
T Consensus 208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~e-k~dsf~--------~P~y~ps~~E~~~~l 278 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEE-KLDSFN--------VPIYAPSTEEVKRIV 278 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHH-HHHTCC--------CSBCCCCHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchh-hhcccC--------CcccCCCHHHHHHHH
Confidence 666689999999999988877664 2 22222222222111110 000000 001246999999999
Q ss_pred HHcC-ceeeEEeee
Q 025144 233 LEIG-FSRAKHYEL 245 (257)
Q Consensus 233 ~~~G-f~~~~~~~~ 245 (257)
++.| |++.....+
T Consensus 279 e~~g~F~i~~le~~ 292 (384)
T 2efj_A 279 EEEGSFEILYLETF 292 (384)
T ss_dssp HHHCSEEEEEEEEE
T ss_pred HHcCCceEEEEEEE
Confidence 9985 888776544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-10 Score=96.90 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++.+..+. . +.++.+|+.+... .+||+|+
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl---~-v~~~~~d~~~~~~--~~fD~Vv 358 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNV---D-AEFEVASDREVSV--KGFDTVI 358 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC---C-EEEEECCTTTCCC--TTCSEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChHHcCc--cCCCEEE
Confidence 456789999999999999999876 46999999999999999998865432 3 8999999988642 3799999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+...-... ...+++.+. .|+|+|.+++..
T Consensus 359 ~dPPr~g~--~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 359 VDPPRAGL--HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp ECCCTTCS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred EcCCccch--HHHHHHHHH-hcCCCcEEEEEC
Confidence 96553222 134555554 489999987764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-12 Score=100.98 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=82.9
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++... ..++.++++|+.++++
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~ 89 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQF 89 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTC
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCc
Confidence 344556667778889999999999999999987 37999999999999998887652 1589999999999876
Q ss_pred CC-CcccEEEecccccCc-----------ccHHHHH----HHHHhcccCCCEEEEE
Q 025144 138 SD-CFFDAITMGYGLRNV-----------VDKRKAL----EESFRVLKPGSRISVL 177 (257)
Q Consensus 138 ~~-~~~D~v~~~~~l~~~-----------~~~~~~l----~~~~~~Lk~gG~l~~~ 177 (257)
+. ++| .|+++...+.. ......+ +.+.++|+|||.+.+.
T Consensus 90 ~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 90 PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 53 678 66665433321 1112223 6688999999987653
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-10 Score=90.89 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=100.0
Q ss_pred CCeEEEecCCCChhHHHHHHH--------h------CCCceEEEEeCChhHHHHHHhhhhhhhh---------ccCCCee
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQ--------V------GSQGKVIGLDFSKNQLSMASSRQDLVSK---------ACYKNIE 126 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~--------~------~~~~~v~~~D~s~~~~~~a~~~~~~~~~---------~~~~~~~ 126 (257)
..+|+|+|||+|..+..+... . .|..++...|+....-...=+.+..... ....+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999998877332 1 2567899999766554333222221100 0001112
Q ss_pred E---EEccCCCCCCCCCcccEEEecccccCcc--------------------------------------cHHHHHHHHH
Q 025144 127 W---VEGDALDLPFSDCFFDAITMGYGLRNVV--------------------------------------DKRKALEESF 165 (257)
Q Consensus 127 ~---~~~d~~~~~~~~~~~D~v~~~~~l~~~~--------------------------------------~~~~~l~~~~ 165 (257)
+ +.+.+-.-.+|++++|+|+++.+|||+. |...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333333457899999999999999986 3344688899
Q ss_pred hcccCCCEEEEEeecCCCchhHH-----HHH-HHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHH-HcCce
Q 025144 166 RVLKPGSRISVLDFNKSTQPFTT-----AIQ-EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFS 238 (257)
Q Consensus 166 ~~Lk~gG~l~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~ 238 (257)
+.|+|||.+++......+..... ... ..+...+...........+..... .....+.+.++++++++ +.||+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f-~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF-NIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSC-CCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccC-CccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999887765532110 111 111111100000000000000000 00012469999999998 58999
Q ss_pred eeEEeeec
Q 025144 239 RAKHYELS 246 (257)
Q Consensus 239 ~~~~~~~~ 246 (257)
+.....+.
T Consensus 292 I~~le~~~ 299 (374)
T 3b5i_A 292 IDKLVVYK 299 (374)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 88766553
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.2e-11 Score=92.55 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.+.+...+...++ +|||||||+|.++..+++. +.+|+++|+++.|++.+++++.. .+++++++|+.
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l 101 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG------LPVRLVFQDAL 101 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT------SSEEEEESCGG
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC------CCEEEEECChh
Confidence 34556667777788888 9999999999999999987 36899999999999999988752 58999999999
Q ss_pred CCCCCC-CcccEEEecccccC
Q 025144 134 DLPFSD-CFFDAITMGYGLRN 153 (257)
Q Consensus 134 ~~~~~~-~~~D~v~~~~~l~~ 153 (257)
++++++ ..+|.|+++...+-
T Consensus 102 ~~~~~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 102 LYPWEEVPQGSLLVANLPYHI 122 (271)
T ss_dssp GSCGGGSCTTEEEEEEECSSC
T ss_pred hCChhhccCccEEEecCcccc
Confidence 877543 26888888765543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-11 Score=91.70 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||||||+|.++..+++. ..+|+++|+++.|++.+++++... ++++++++|+.+
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~~-----~~v~~i~~D~~~ 86 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQQ-----KNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTTC-----TTEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhhC-----CCcEEEEcchHh
Confidence 345566777778888999999999999999999876 469999999999999999987541 689999999998
Q ss_pred CCCC----CCcccEEEeccc
Q 025144 135 LPFS----DCFFDAITMGYG 150 (257)
Q Consensus 135 ~~~~----~~~~D~v~~~~~ 150 (257)
++++ +++|| |+++..
T Consensus 87 ~~~~~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 87 FDFSSVKTDKPLR-VVGNLP 105 (255)
T ss_dssp CCGGGSCCSSCEE-EEEECC
T ss_pred CCHHHhccCCCeE-EEecCC
Confidence 8653 35688 555443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=84.24 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=84.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh--hccCCCeeEEEccCCCCC-CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--KACYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
+...+||-||.|.|..++.+++. .+..+++.+|+++++++.+++.+.... .-..++++++.+|...+- ...++||+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 44569999999999999999987 355799999999999999998875321 112378999999998753 44678999
Q ss_pred EEecccccCcc----cHHHHHHHHHhcccCCCEEEEEe
Q 025144 145 ITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|++...-..-+ --..+++.+++.|+|||+++...
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 99754311111 12578999999999999998754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-09 Score=96.08 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh-----------------------------------------C
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV-----------------------------------------G 92 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----------------------------------------~ 92 (257)
.+.+...++......++.+|||.+||+|.+++..+... .
T Consensus 175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 34556667777777788899999999999998877642 0
Q ss_pred CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC--CCcccEEEecccccCc----ccHHHHHHHH--
Q 025144 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGYGLRNV----VDKRKALEES-- 164 (257)
Q Consensus 93 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~-- 164 (257)
+...++|+|+++.+++.|+.++...+.. ..+.+.++|+.++..+ .++||+|+++..+..- .+...+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~--~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIG--ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 1257999999999999999998776543 4689999999886432 3489999998765432 2334444444
Q ss_pred -HhcccCCCEEEEEe
Q 025144 165 -FRVLKPGSRISVLD 178 (257)
Q Consensus 165 -~~~Lk~gG~l~~~~ 178 (257)
.+.+.|||.+++..
T Consensus 333 ~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 333 IMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHCTTCEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 44455899988875
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=92.00 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCeEEEecCCCChhHHHHHHH---------------hCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQ---------------VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~---------------~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
..-+|+|+||++|..+..+... -.|..+|...|+.......+-+.+...... .+..++.+...
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~--~~~~f~~gvpg 128 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--DGVCFINGVPG 128 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC--TTCEEEEEEES
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc--CCCEEEEecch
Confidence 3458999999999877644332 135678999999888887777666432110 12344444443
Q ss_pred C---CCCCCCcccEEEecccccCcccH---------------------------------HHHHHHHHhcccCCCEEEEE
Q 025144 134 D---LPFSDCFFDAITMGYGLRNVVDK---------------------------------RKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 134 ~---~~~~~~~~D~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+ -.+|++++|+|+++.++||+.+. ..+|+..++.|+|||.+++.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3 45889999999999999998542 23488889999999999988
Q ss_pred eecCCCc
Q 025144 178 DFNKSTQ 184 (257)
Q Consensus 178 ~~~~~~~ 184 (257)
.....+.
T Consensus 209 ~~gr~~~ 215 (359)
T 1m6e_X 209 ILGRRSE 215 (359)
T ss_dssp EEECSSS
T ss_pred EecCCCC
Confidence 7766553
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=92.22 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=71.7
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 136 (257)
.+.+...+...++.+|||+|||+|..+..+++.+ ++.+++++|.|+.+++.|+++++..+ .++.++++|+.+++
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~ 89 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADF 89 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHH
Confidence 3445566677788899999999999999999985 46799999999999999999886543 58999999998764
Q ss_pred -CC---CCcccEEEeccc
Q 025144 137 -FS---DCFFDAITMGYG 150 (257)
Q Consensus 137 -~~---~~~~D~v~~~~~ 150 (257)
+. .++||.|++...
T Consensus 90 ~l~~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 90 LLKTLGIEKVDGILMDLG 107 (301)
T ss_dssp HHHHTTCSCEEEEEEECS
T ss_pred HHHhcCCCCCCEEEEcCc
Confidence 11 157999998654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=96.77 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-----------------CceEEEEeCChhHHHHHHhhhhhh
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-----------------QGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
....+.+...+...++.+|+|.|||+|.++..+.+.+.. ...++|+|+++.++..|+.++...
T Consensus 155 ~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence 334556667777777889999999999999888776421 137999999999999999876543
Q ss_pred hhcc--CCCeeEEEccCCCCC-CCCCcccEEEecccccCccc--------------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 118 SKAC--YKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVD--------------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 118 ~~~~--~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--------------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+... ..+..+.++|....+ ...++||+|+++..+..... ...++.++.+.|+|||++.++.++
T Consensus 235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3210 012788999986643 33468999999877654322 246899999999999998887643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=92.87 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+...+...+... +.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++.+..+. .++.++.+|+.+
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~---~~v~~~~~d~~~ 272 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI---DNVQIIRMAAEE 272 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC---CSEEEECCCSHH
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEECCHHH
Confidence 34445555555444 468999999999999998865 35899999999999999998865442 489999999876
Q ss_pred CC--CCC--------------CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 135 LP--FSD--------------CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 135 ~~--~~~--------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.. ... ++||+|++...-.. +...+.+.|+++|.++.+..+
T Consensus 273 ~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 273 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp HHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHTTSSEEEEEESC
T ss_pred HHHHHhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHhCCCEEEEEECC
Confidence 41 111 37999998543221 234556666788988777654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-09 Score=92.57 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHH---HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSF---LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~---~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
....|||+|||+|-+.. ..++..+...+|+++|.|+ +...+++..+..+.. .+|+++++|++++..| +++|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~--dkVtVI~gd~eev~LP-EKVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG--SQVTVVSSDMREWVAP-EKADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG--GGEEEEESCTTTCCCS-SCEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC--CeEEEEeCcceeccCC-cccCEE
Confidence 34579999999998844 3333322233799999987 666777777665554 6899999999998776 789999
Q ss_pred Eeccc--ccCcccHHHHHHHHHhcccCCCEEE
Q 025144 146 TMGYG--LRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 146 ~~~~~--l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
++-.+ +-..+.....+....+.|||||.++
T Consensus 433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 97322 1111334567888889999999874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-10 Score=92.62 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=80.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh---------------hhccCCCeeEEEccCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------------SKACYKNIEWVEGDAL 133 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~d~~ 133 (257)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.. +. .++.++++|+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl---~~i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE---KTIVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---SEEEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---CceEEEcCcHH
Confidence 57799999999999999999885 4468999999999999999998765 32 34899999987
Q ss_pred CCCC-CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 134 DLPF-SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 134 ~~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.. ..+.||+|++.. .. ....++..+.+.|++||.+++..
T Consensus 123 ~~~~~~~~~fD~I~lDP-~~---~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 123 RLMAERHRYFHFIDLDP-FG---SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHSTTCEEEEEECC-SS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhccCCCCEEEeCC-CC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence 6421 135799999643 22 34678889999999999876654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=83.40 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||||||+|.++..+++. +..+++++|+|+.+++.++++ . . .+++++++|+.+
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~-~--~----~~v~~i~~D~~~ 87 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI-G--D----ERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS-C--C----TTEEEECSCTTT
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc-c--C----CCeEEEEcchhh
Confidence 445566777777788899999999999999999876 247999999999999999887 2 1 589999999998
Q ss_pred CCCC
Q 025144 135 LPFS 138 (257)
Q Consensus 135 ~~~~ 138 (257)
++++
T Consensus 88 ~~~~ 91 (249)
T 3ftd_A 88 FPFC 91 (249)
T ss_dssp CCGG
T ss_pred CChh
Confidence 8754
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=85.00 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh------CCC-----ceEEEEeCCh---hHHH-----------HHHhhhhhhh----
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV------GSQ-----GKVIGLDFSK---NQLS-----------MASSRQDLVS---- 118 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~------~~~-----~~v~~~D~s~---~~~~-----------~a~~~~~~~~---- 118 (257)
.+..+|||+|+|+|..+..+++.. .|. .+++++|..+ +.+. .+++.++..+
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 455699999999999998877653 453 5899999876 4444 3343333210
Q ss_pred -------hccCCCeeEEEccCCC-CC-CCC---CcccEEEecc-cccCccc--HHHHHHHHHhcccCCCEEEE
Q 025144 119 -------KACYKNIEWVEGDALD-LP-FSD---CFFDAITMGY-GLRNVVD--KRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 119 -------~~~~~~~~~~~~d~~~-~~-~~~---~~~D~v~~~~-~l~~~~~--~~~~l~~~~~~Lk~gG~l~~ 176 (257)
.....+++++.+|+.+ ++ .++ ..||+|+... .-..-++ -..++..+.++|+|||.++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0111367789999876 33 222 2799999853 2221223 36789999999999999863
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-10 Score=92.66 Aligned_cols=104 Identities=16% Similarity=0.046 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCC-eeEEEccCCCCC--CCCCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKN-IEWVEGDALDLP--FSDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~~--~~~~~~D 143 (257)
.++.+|||++||+|.++..++... .+ .+|+++|+++.+++.++++++..+.. .+ +.++++|+.++. ...+.||
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~-~ga~~V~avDi~~~av~~~~~N~~~Ngl~--~~~v~v~~~Da~~~l~~~~~~~fD 127 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLET-SCVEKAYANDISSKAIEIMKENFKLNNIP--EDRYEIHGMEANFFLRKEWGFGFD 127 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHC-SCEEEEEEECSCHHHHHHHHHHHHHTTCC--GGGEEEECSCHHHHHHSCCSSCEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHhCCC--CceEEEEeCCHHHHHHHhhCCCCc
Confidence 457799999999999999999874 33 58999999999999999998765532 23 899999986531 1245799
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|++.. ...+..++..+.+.|++||.+++..
T Consensus 128 ~V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 128 YVDLDP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 999865 2234568889999999999876655
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=85.55 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
..+.+.+...+...++.+|||||||+|.++..+++.... ..+|+++|+|+.|++.++++. . .++.++++|+.
T Consensus 28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~----~~v~~i~~D~~ 100 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G----ELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G----GGEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C----CCcEEEECChh
Confidence 345566777778888899999999999999999988422 134999999999999999883 1 68999999999
Q ss_pred CCCCC
Q 025144 134 DLPFS 138 (257)
Q Consensus 134 ~~~~~ 138 (257)
+++++
T Consensus 101 ~~~~~ 105 (279)
T 3uzu_A 101 TFDFG 105 (279)
T ss_dssp GCCGG
T ss_pred cCChh
Confidence 87653
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=89.55 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=65.3
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh-------hHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK-------NQLSMASSRQDLVSKACYKNIEWVEGDALDL-P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~ 136 (257)
+...++.+|||+|||+|..+..+++. +.+|+++|+|+ .+++.++++.+..+.. .+++++++|..++ +
T Consensus 79 ~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~--~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 79 VNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA--ARINLHFGNAAEQMP 153 (258)
T ss_dssp TTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH--TTEEEEESCHHHHHH
T ss_pred hCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc--cCeEEEECCHHHHHH
Confidence 34456789999999999999999986 46899999999 9999998876544432 3599999999874 2
Q ss_pred -CCC--CcccEEEecccccC
Q 025144 137 -FSD--CFFDAITMGYGLRN 153 (257)
Q Consensus 137 -~~~--~~~D~v~~~~~l~~ 153 (257)
+++ ++||+|++..++.+
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHCCCSEEEECCCC--
T ss_pred hhhccCCCccEEEECCCCCC
Confidence 333 68999999876654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=84.59 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=66.1
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||||||+|.++. +. . ....+|+++|+++.|++.+++++... ++++++++|+.+
T Consensus 7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~-----~~v~~i~~D~~~ 78 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC-----CceEEEECchhh
Confidence 3455566677777888899999999999999 64 4 22223999999999999999887542 489999999998
Q ss_pred CCCCC-----CcccEEEecccc
Q 025144 135 LPFSD-----CFFDAITMGYGL 151 (257)
Q Consensus 135 ~~~~~-----~~~D~v~~~~~l 151 (257)
+++++ +..|.|+++...
T Consensus 79 ~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 79 FNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEECCT
T ss_pred CCHHHhhcccCCceEEEECCCC
Confidence 76432 123566665543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-09 Score=90.99 Aligned_cols=150 Identities=13% Similarity=0.051 Sum_probs=99.6
Q ss_pred chhHHHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC-------------
Q 025144 28 SSERQELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG------------- 92 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------- 92 (257)
.+.+.+.|+.+...|....... .+--.....+.+...+...++ +|+|.+||+|.+...+.+.+.
T Consensus 202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~ 280 (544)
T 3khk_A 202 KDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQ 280 (544)
T ss_dssp CCSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHH
Confidence 4556667776555543321111 111234455666666666555 999999999999887765431
Q ss_pred -CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEecccccCc----------------
Q 025144 93 -SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNV---------------- 154 (257)
Q Consensus 93 -~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~---------------- 154 (257)
....++|+|+++.++..|+.++...+.. .++.+.++|....+ ++..+||+|+++..+..-
T Consensus 281 ~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~--~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g 358 (544)
T 3khk_A 281 KKQISVYGQESNPTTWKLAAMNMVIRGID--FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTIN 358 (544)
T ss_dssp GGGEEEEECCCCHHHHHHHHHHHHHTTCC--CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEEC
T ss_pred hhhceEEEEeCCHHHHHHHHHHHHHhCCC--cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcC
Confidence 0358999999999999999887544322 23444778866543 456789999998766531
Q ss_pred ---------c----cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 155 ---------V----DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 155 ---------~----~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ .-..++.++.+.|+|||++.++.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 359 TNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp CC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred cccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 1 0125799999999999998877643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-09 Score=83.61 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=70.8
Q ss_pred HHhhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----c--cCCCeeEEEccC
Q 025144 61 AVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A--CYKNIEWVEGDA 132 (257)
Q Consensus 61 ~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~--~~~~~~~~~~d~ 132 (257)
+...+...++ .+|||++||+|..+..++.. +.+|+++|.++.+.+.+++.++.... . ...+++++++|.
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 4445556666 89999999999999999987 45899999999887776665543210 0 004799999998
Q ss_pred CCC-CCCCCcccEEEecccccCcccHHHHHHHHHhcccC
Q 025144 133 LDL-PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKP 170 (257)
Q Consensus 133 ~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~ 170 (257)
.++ +...++||+|++..++.+-. ....+++..+.|++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~~~-~saavkk~~~~lr~ 192 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPHKQ-KSALVKKEMRVFQS 192 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCCC-C-----HHHHHHHH
T ss_pred HHHHHhCcccCCEEEEcCCCCCcc-cchHHHHHHHHHHH
Confidence 763 32224699999988776543 22344444455544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-08 Score=85.06 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHHHhhhC----CCCCCeEEEecCCCChhHHHHHHHhC--CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE
Q 025144 56 IWKRMAVSWSG----AKTGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129 (257)
Q Consensus 56 ~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (257)
...+.+...+. ..++.+|+|.+||+|.+...+.+.+. ....++|+|+++.++..|+.++...+.. ..++.+.+
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-~~~~~I~~ 282 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-IENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEE
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-cCccceEe
Confidence 34445555443 44677999999999999988887752 2468999999999999999876443321 13678999
Q ss_pred ccCCCC--C-CCCCcccEEEecccccCc--------cc---------------HHHHHHHHHhccc-CCCEEEEEeec
Q 025144 130 GDALDL--P-FSDCFFDAITMGYGLRNV--------VD---------------KRKALEESFRVLK-PGSRISVLDFN 180 (257)
Q Consensus 130 ~d~~~~--~-~~~~~~D~v~~~~~l~~~--------~~---------------~~~~l~~~~~~Lk-~gG~l~~~~~~ 180 (257)
+|.... + ....+||+|+++..+..- .+ --.++.++.+.|+ +||++.++.++
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 998765 3 346789999997554311 00 1247899999999 99998877644
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-08 Score=74.10 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-------------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------------- 135 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------------- 135 (257)
+..+|||+|| |..+..+++. ++.+|+.+|.+++..+.++++++..+.....++.++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 4569999998 5677777763 3679999999999999999998765530015899999996542
Q ss_pred --C--------C-CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 --P--------F-SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 --~--------~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+ . ..++||+|++..-. ....+..+.+.|+|||.+++-+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 13689999987632 2466666779999999996644
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=79.21 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=73.4
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
..+.++.+|||+|||+|.++..+++.. +...+.++|++..+....... ...+ .++..+..++....++++++|+
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~~g----~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QSLG----WNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CBTT----GGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-CcCC----CCeEEEeccceehhcCCCCccE
Confidence 445677899999999999999888762 344788999875531110000 0000 2556667766555566788999
Q ss_pred EEeccccc----CcccH--HHHHHHHHhcccCC-CEEEEEeec
Q 025144 145 ITMGYGLR----NVVDK--RKALEESFRVLKPG-SRISVLDFN 180 (257)
Q Consensus 145 v~~~~~l~----~~~~~--~~~l~~~~~~Lk~g-G~l~~~~~~ 180 (257)
|++..+.+ ..+.. ..+|+.+.++|+|| |.+++-.+.
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 99977665 12221 23478889999999 999885554
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-09 Score=88.96 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh--hhccCCCeeEEEccCCCC-CC-CCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV--SKACYKNIEWVEGDALDL-PF-SDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~d~~~~-~~-~~~~~D~ 144 (257)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++++.. +. .++.++++|+.+. +. ++++||+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl---~~i~~i~~Da~~~L~~~~~~~fDv 166 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG---KDVNILTGDFKEYLPLIKTFHPDY 166 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT---CEEEEEESCGGGSHHHHHHHCCSE
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC---CcEEEEECcHHHhhhhccCCCceE
Confidence 4789999999999999988865 469999999999999999998754 32 4799999999874 21 2357999
Q ss_pred EEecc
Q 025144 145 ITMGY 149 (257)
Q Consensus 145 v~~~~ 149 (257)
|++..
T Consensus 167 V~lDP 171 (410)
T 3ll7_A 167 IYVDP 171 (410)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99853
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-08 Score=84.61 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=71.5
Q ss_pred CCeEEEecCCCChhHHHHHHH---hC---------CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQ---VG---------SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~---~~---------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
+..|||+|||+|-++...++. .+ ...+|+++|.|+.+...++.+.. .+.. .+++++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~--d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK--RRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT--TCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC--CeEEEEeCchhhccc
Confidence 458999999999996433222 11 13499999999876655555443 2222 579999999999865
Q ss_pred C-----CCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEE
Q 025144 138 S-----DCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 138 ~-----~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+ .+++|+|++-.. ..+ +-....|..+.+.|||||.++
T Consensus 487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3 578999997443 222 223567888889999999874
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.8e-08 Score=79.03 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=95.1
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc---cCCCeeEEEccCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---CYKNIEWVEGDALDL 135 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~d~~~~ 135 (257)
......+...++.+|||+++|.|.-+.++++.. +...++++|+++.-+...+++++..+.. ...++.+...|...+
T Consensus 138 ~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~ 216 (359)
T 4fzv_A 138 LLPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW 216 (359)
T ss_dssp HHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH
T ss_pred HHHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc
Confidence 445556788899999999999999999999874 5568999999999999998887655321 114788888888765
Q ss_pred C-CCCCcccEEEecccccC--------ccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHH
Q 025144 136 P-FSDCFFDAITMGYGLRN--------VVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 189 (257)
Q Consensus 136 ~-~~~~~~D~v~~~~~l~~--------~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~ 189 (257)
+ ...+.||.|++...... -++ ..++|.+..+.|||||.|+..+.+.........
T Consensus 217 ~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~v 295 (359)
T 4fzv_A 217 GELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYV 295 (359)
T ss_dssp HHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHH
T ss_pred chhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHH
Confidence 3 34578999996433211 111 145788899999999999888877544444333
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=74.10 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=84.5
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC----CCceEEEEeCChh--------------------------H
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKN--------------------------Q 106 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~--------------------------~ 106 (257)
+...+..........+|||+|+..|..+..+++.+. ++.+++++|.... .
T Consensus 94 L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~ 173 (282)
T 2wk1_A 94 IRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVS 173 (282)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCC
T ss_pred HHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhH
Confidence 333333344344556999999999999988876542 3678999996421 3
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCC-CC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++.++++++..+.. .+++.++.+|+.+ ++ .++++||+|++.... .......|+.+...|+|||++++-+.
T Consensus 174 ~~~ar~n~~~~gl~-~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 174 EEEVRRNFRNYDLL-DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp HHHHHHHHHHTTCC-STTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HHHHHHHHHHcCCC-cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 56677777655421 1589999999975 33 445789999987642 23346789999999999999987664
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-07 Score=80.43 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC--CCceEEEEeCChhHHHHH--Hhhhhhhhh-ccCCCeeEEEccCCCCC-CCCCc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMA--SSRQDLVSK-ACYKNIEWVEGDALDLP-FSDCF 141 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a--~~~~~~~~~-~~~~~~~~~~~d~~~~~-~~~~~ 141 (257)
.++.+|||.|||+|.++..+++.++ ...+++|+|+++.+++.| +.++..... .......+...|..... ...++
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4577999999999999999988752 135899999999999999 433321000 01123456666665532 23468
Q ss_pred ccEEEecccccC-ccc----------------------------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 142 FDAITMGYGLRN-VVD----------------------------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 142 ~D~v~~~~~l~~-~~~----------------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
||+|+++..+.. ... ...++.++.+.|++||.+.++.++
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 999999877632 110 233678899999999999887654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-08 Score=77.49 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.+.++.+|||||||+|.++..+++.. +...+.++|++..+...+... ...+ .++.....+.....++.+++|+|
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~~~g----~~ii~~~~~~dv~~l~~~~~DvV 160 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-TTLG----WNLIRFKDKTDVFNMEVIPGDTL 160 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTT----GGGEEEECSCCGGGSCCCCCSEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-ccCC----CceEEeeCCcchhhcCCCCcCEE
Confidence 56778899999999999999988663 445789999987642222110 0001 24444444333333456889999
Q ss_pred Eeccccc----Cccc--HHHHHHHHHhcccCC--CEEEEEeec
Q 025144 146 TMGYGLR----NVVD--KRKALEESFRVLKPG--SRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~----~~~~--~~~~l~~~~~~Lk~g--G~l~~~~~~ 180 (257)
++..... ..+. ...+|.-+.++|+|| |.+++-.+.
T Consensus 161 LSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 161 LCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred EecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 9977766 1111 123477778899999 999886655
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=70.45 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.++.++||+||.+|.++..++++ +..|+++|+.+ |-...... +++.+++.|......+.+++|+|+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~~l~~~---------~~V~~~~~d~~~~~~~~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQSLMDT---------GQVTWLREDGFKFRPTRSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCHHHHTT---------TCEEEECSCTTTCCCCSSCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cChhhccC---------CCeEEEeCccccccCCCCCcCEEE
Confidence 467899999999999999999877 57999999864 32222211 689999999998877677899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~g 171 (257)
|..+.. +...+..+.+.+..+
T Consensus 276 sDm~~~----p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 276 CDMVEK----PAKVAALMAQWLVNG 296 (375)
T ss_dssp ECCSSC----HHHHHHHHHHHHHTT
T ss_pred EcCCCC----hHHhHHHHHHHHhcc
Confidence 966543 455555555555443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-08 Score=98.30 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=74.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCC----CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~ 142 (257)
.+..+|||||+|+|..+..+.+.++. ..+|+..|+|+...+.++++++.. .+.....|..+. ++...+|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence 35679999999999988777766532 238999999999888888887542 233322344332 2234679
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhcc
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 222 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (257)
|+|++.+++|..++....+.+++++|||||.+++.+..... .......|... .......+
T Consensus 1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~--~~g~~~~~~~~------------------~~r~~~~~ 1372 (2512)
T 2vz8_A 1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGH--PLGEMVGFLTS------------------PEQGGRHL 1372 (2512)
T ss_dssp CEEEEECC--------------------CCEEEEEEC-------------------------------------------
T ss_pred eEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccc--ccccccccccc------------------ccccCCcc
Confidence 99999999998888999999999999999999887643210 01111111100 00011234
Q ss_pred CCHHHHHHHHHHcCceeeEEe
Q 025144 223 LTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
.+.++|.++|..+||..+...
T Consensus 1373 ~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A 1373 LSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp ---CTTTTSSTTTTEEEEEEE
T ss_pred cCHHHHHHHHHhCCCceeeec
Confidence 577888899999999887654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=71.10 Aligned_cols=86 Identities=22% Similarity=0.284 Sum_probs=69.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+.+.++..+.+.++..++|++||.|..+..+++. +.+|+|+|.++.+++.+++ ++. +++.++++++.++.
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~ 79 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLK 79 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHH
Confidence 4455666677888899999999999999999987 4699999999999999988 643 48999999998863
Q ss_pred -----CCCCcccEEEeccccc
Q 025144 137 -----FSDCFFDAITMGYGLR 152 (257)
Q Consensus 137 -----~~~~~~D~v~~~~~l~ 152 (257)
...+++|.|++...+.
T Consensus 80 ~~L~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 80 RHLAALGVERVDGILADLGVS 100 (285)
T ss_dssp HHHHHTTCSCEEEEEEECSCC
T ss_pred HHHHHcCCCCcCEEEeCCccc
Confidence 2235799999755443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-07 Score=74.54 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-----ccCCCeeEEEccCCCCC----CCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-----ACYKNIEWVEGDALDLP----FSD 139 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~d~~~~~----~~~ 139 (257)
++.+||-||.|.|..++.+++. + ..+++.+|+++++++.+++.+..... ...++++++..|...+- -..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4579999999999999999976 3 46899999999999999987643211 11146889999986532 124
Q ss_pred CcccEEEecccccCc-cc---------HHHHHHHHHhcccCCCEEEEE
Q 025144 140 CFFDAITMGYGLRNV-VD---------KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~-~~---------~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++||+|+....-... .+ -..+++.+++.|+|||+++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 679999976432111 11 246788999999999999764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=60.73 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=61.5
Q ss_pred CCCeEEEecCCCC-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC-CcccEEE
Q 025144 69 TGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD-CFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~ 146 (257)
++.+|||||||.| ..+..|++. .+.+|+++|+++..++ +++.|+.+..... +.||+|+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~------------------~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG------------------IVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT------------------EECCCSSSCCHHHHTTEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc------------------eEEccCCCCcccccCCcCEEE
Confidence 4569999999999 699999875 3679999999885432 7888988743211 4799998
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+... -+++...+.++.+ +-|.-+++..+..
T Consensus 95 sirP---P~El~~~i~~lA~--~v~adliI~pL~~ 124 (153)
T 2k4m_A 95 SIRP---PAEIHSSLMRVAD--AVGARLIIKPLTG 124 (153)
T ss_dssp EESC---CTTTHHHHHHHHH--HHTCEEEEECBTT
T ss_pred EcCC---CHHHHHHHHHHHH--HcCCCEEEEcCCC
Confidence 7654 2344555555555 3366777765554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.38 E-value=7e-06 Score=70.90 Aligned_cols=124 Identities=20% Similarity=0.208 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC------------CceEEEEeCChhHHHHHHhhhhhhhhcc
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS------------QGKVIGLDFSKNQLSMASSRQDLVSKAC 121 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 121 (257)
.+...+.+..++...++.+|+|.+||+|.+.....+.+.. ...++|+|+++.+...|+.++--.+.
T Consensus 202 P~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~-- 279 (530)
T 3ufb_A 202 PRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL-- 279 (530)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC--
T ss_pred cHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC--
Confidence 4455677777888888889999999999998877664311 23699999999999999877543332
Q ss_pred CCCeeEEEccCCCCCC----CCCcccEEEecccccCcc---------------c-HHHHHHHHHhccc-------CCCEE
Q 025144 122 YKNIEWVEGDALDLPF----SDCFFDAITMGYGLRNVV---------------D-KRKALEESFRVLK-------PGSRI 174 (257)
Q Consensus 122 ~~~~~~~~~d~~~~~~----~~~~~D~v~~~~~l~~~~---------------~-~~~~l~~~~~~Lk-------~gG~l 174 (257)
....+..+|....+. +..+||+|+++..+..-. + -..++.++.+.|| +||++
T Consensus 280 -~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~ 358 (530)
T 3ufb_A 280 -EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA 358 (530)
T ss_dssp -SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred -ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence 345677888765432 235799999988774221 1 1345677777776 69998
Q ss_pred EEEeec
Q 025144 175 SVLDFN 180 (257)
Q Consensus 175 ~~~~~~ 180 (257)
.++.++
T Consensus 359 avVlP~ 364 (530)
T 3ufb_A 359 AVVVPN 364 (530)
T ss_dssp EEEEEH
T ss_pred EEEecc
Confidence 877643
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-06 Score=66.04 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=68.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+||++|.++..+++.. +-..|.++|+...+...... ....+ .++.....+.....+..+.+|+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~----~~iv~~~~~~di~~l~~~~~DlVl 152 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLG----WNIVKFKDKSNVFTMPTEPSDTLL 152 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTT----GGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccC----CceEEeecCceeeecCCCCcCEEe
Confidence 4578899999999999999999763 34478999997643111100 00000 133333333332234567899999
Q ss_pred ecccccCcc----c---HHHHHHHHHhcccCC-CEEEEEeec
Q 025144 147 MGYGLRNVV----D---KRKALEESFRVLKPG-SRISVLDFN 180 (257)
Q Consensus 147 ~~~~l~~~~----~---~~~~l~~~~~~Lk~g-G~l~~~~~~ 180 (257)
+..... .. | ...+|.-+.++|+|| |.+++-.+.
T Consensus 153 sD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 153 CDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp ECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred ecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 976655 21 1 134577778899999 999887655
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.7e-06 Score=67.31 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=71.5
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...++..+.+.++..++|..+|.|..+..+++.+++..+|+++|.++.+++.++ ++. . .++.++++++.++.
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~--~----~Rv~lv~~nF~~l~ 117 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID--D----PRFSIIHGPFSALG 117 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC--C----TTEEEEESCGGGHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc--C----CcEEEEeCCHHHHH
Confidence 4455666777889999999999999999999998777889999999999999984 442 1 68999999998753
Q ss_pred -----CC-CCcccEEEeccccc
Q 025144 137 -----FS-DCFFDAITMGYGLR 152 (257)
Q Consensus 137 -----~~-~~~~D~v~~~~~l~ 152 (257)
.. .+++|.|++...+.
T Consensus 118 ~~L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 118 EYVAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHHHHTTCTTCEEEEEEECSCC
T ss_pred HHHHhcCCCCcccEEEECCccC
Confidence 11 13699999876655
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.11 E-value=7.9e-05 Score=60.46 Aligned_cols=154 Identities=8% Similarity=0.037 Sum_probs=100.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc------------------cCCCeeEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------------CYKNIEWVE 129 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------------~~~~~~~~~ 129 (257)
.+...|+.+|||.......+.... ++..++-+|. |++++.-++.+...+.. ...+..++.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 456799999999998888887652 4667777887 78887777766543210 015789999
Q ss_pred ccCCCCC--------C-CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC---CchhHHHHHHHHH
Q 025144 130 GDALDLP--------F-SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS---TQPFTTAIQEWMI 195 (257)
Q Consensus 130 ~d~~~~~--------~-~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~---~~~~~~~~~~~~~ 195 (257)
.|+.+.. . ..+...++++-.++.+++ ....+++.+.+.. |+|.+++.+...+ .......+...+.
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~ 252 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLK 252 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhh
Confidence 9998731 1 235678888999999995 4677788888776 7888777776555 3222222211111
Q ss_pred hhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCce
Q 025144 196 DNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFS 238 (257)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 238 (257)
.....++. +...+.+.++..+.|.++||+
T Consensus 253 ~~rg~~l~--------------~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMP--------------TLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCT--------------TTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCccc--------------ccccCCCHHHHHHHHHHCCCC
Confidence 10101110 111356888889999999996
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=60.30 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 144 (257)
-+.|+.+|+|+||+.|.++...++..+ -..|.|.++.... . ... ..... .+..-+.+.++ |+.++. +.++|+
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~-vg~V~G~vig~D~-~-~~P-~~~~~-~Gv~~i~~~~G~Df~~~~--~~~~Dv 142 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKN-VQEVRGYTKGGPG-H-EEP-MLMQS-YGWNIVTMKSGVDVFYKP--SEISDT 142 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTT-EEEEEEECCCSTT-S-CCC-CCCCS-TTGGGEEEECSCCGGGSC--CCCCSE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcC-CCCceeEEEcccc-c-cCC-CcccC-CCceEEEeeccCCccCCC--CCCCCE
Confidence 467899999999999999999987621 1244555554331 0 000 00000 00011345556 988743 457999
Q ss_pred EEecccccCcc----cH---HHHHHHHHhcccCCC-EEEEEeec
Q 025144 145 ITMGYGLRNVV----DK---RKALEESFRVLKPGS-RISVLDFN 180 (257)
Q Consensus 145 v~~~~~l~~~~----~~---~~~l~~~~~~Lk~gG-~l~~~~~~ 180 (257)
|+|...-. -. |. ...|.-+.++|+||| .+++-.+.
T Consensus 143 VLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 143 LLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 99866543 21 11 124666778999999 88887666
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.6e-05 Score=58.02 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=70.8
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCccc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFD 143 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D 143 (257)
..+.++.+|||+||++|.++.+.+... ...+|.++|+...-.+.-. .....+. ..+.+... |+..++. .++|
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~-~~~ql~w---~lV~~~~~~Dv~~l~~--~~~D 162 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQ-LVQSYGW---NIVTMKSGVDVFYRPS--ECCD 162 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCC-CCCBTTG---GGEEEECSCCTTSSCC--CCCS
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcc-hhhhcCC---cceEEEeccCHhhCCC--CCCC
Confidence 456778899999999999999888774 2347999998664211000 0011111 34777777 7766653 5699
Q ss_pred EEEecccccCcccH-------HHHHHHHHhcccCC-CEEEEEeecC
Q 025144 144 AITMGYGLRNVVDK-------RKALEESFRVLKPG-SRISVLDFNK 181 (257)
Q Consensus 144 ~v~~~~~l~~~~~~-------~~~l~~~~~~Lk~g-G~l~~~~~~~ 181 (257)
+|+|.-. ..-+++ .+.|+-+.+.|++| |.+++-.+..
T Consensus 163 ~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 163 TLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred EEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 9998766 433321 22566667889888 8887755554
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=8.1e-05 Score=56.29 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 144 (257)
.+.++.+|+|+||++|.++...+...+ ..+|.++|+...-.+.-+ .....+ +..+++.++ |+..++ ..++|.
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~-~~~s~g---wn~v~fk~gvDv~~~~--~~~~Dt 147 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPV-PMSTYG---WNIVKLMSGKDVFYLP--PEKCDT 147 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCC-CCCCTT---TTSEEEECSCCGGGCC--CCCCSE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcc-hhhhcC---cCceEEEeccceeecC--CccccE
Confidence 567888999999999999998887742 348999998654321100 011112 257899998 876554 366999
Q ss_pred EEecccccCcc---cH---HHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 145 ITMGYGLRNVV---DK---RKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 145 v~~~~~l~~~~---~~---~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
|+|...-..-. +. .+.|+-+.+.|++ |.+++-.+....
T Consensus 148 llcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 148 LLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred EEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 99966542221 12 2356666788988 788775555444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.9e-05 Score=60.80 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=46.2
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
+.+.++.... .++..|||++||+|..+..+++. +.+++|+|+++.+++.+++++...
T Consensus 224 l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 224 LAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3444444444 57889999999999999988765 579999999999999999998654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00031 Score=55.81 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCChhHHHHHH---HhCCCc--eEEEEeCCh--------hHHHHHHhh-hhhhhhccCC--CeeEEEccC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSE---QVGSQG--KVIGLDFSK--------NQLSMASSR-QDLVSKACYK--NIEWVEGDA 132 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~---~~~~~~--~v~~~D~s~--------~~~~~a~~~-~~~~~~~~~~--~~~~~~~d~ 132 (257)
+.-+|||+|-|+|.......+ ..++.. +++.+|..+ +......+. ....+.-... .+.+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 345899999999987543322 224554 456666321 111111111 1111110012 346677887
Q ss_pred CCC-C-CCCCcccEEEecccccCcccH----HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccC
Q 025144 133 LDL-P-FSDCFFDAITMGYGLRNVVDK----RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 206 (257)
Q Consensus 133 ~~~-~-~~~~~~D~v~~~~~l~~~~~~----~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (257)
.+. + +++..+|+++... +.--.+| ..+++.+++.++|||.+.-
T Consensus 176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT------------------------------ 224 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS------------------------------ 224 (308)
T ss_dssp HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE------------------------------
T ss_pred HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE------------------------------
Confidence 652 2 3445799999754 2222222 6899999999999999852
Q ss_pred CchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 207 GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
|-....++..|.++||++.+..-+
T Consensus 225 ---------------Ytaag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 225 ---------------YSSSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp ---------------SCCCHHHHHHHHHTTCEEEEEECC
T ss_pred ---------------EeCcHHHHHHHHHCCCEEEecCCC
Confidence 224568889999999997765543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=57.85 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=55.8
Q ss_pred HHHHHHhhhCCC------CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 57 WKRMAVSWSGAK------TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 57 ~~~~~~~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
..+.+...+.+. ++..|||||+|.|.++..|++.. ...+++++|+++.++...++.. . .++++++.+
T Consensus 40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~~ 112 (353)
T 1i4w_A 40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILKR 112 (353)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEECS
T ss_pred HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEEC
Confidence 344455554444 35799999999999999999874 2358999999999999888776 2 168999999
Q ss_pred cCCCC
Q 025144 131 DALDL 135 (257)
Q Consensus 131 d~~~~ 135 (257)
|+.++
T Consensus 113 D~l~~ 117 (353)
T 1i4w_A 113 DPYDW 117 (353)
T ss_dssp CTTCH
T ss_pred Cccch
Confidence 99764
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0041 Score=49.85 Aligned_cols=106 Identities=16% Similarity=0.021 Sum_probs=74.3
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---------CCCCc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------FSDCF 141 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~ 141 (257)
..|+++|||-=.....+.. +.+..++-+| .|+.++..++.+...+.....+..++..|+.+ . +..+.
T Consensus 104 ~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA 179 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred CeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence 4799999997655433321 1246889999 48899888888864332222678899999986 2 22234
Q ss_pred ccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 142 FDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 142 ~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.=++++-.++++++ +...+++.+...+.||+.+++....
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 56777888899886 4677899999888888888665444
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00062 Score=53.22 Aligned_cols=101 Identities=14% Similarity=0.001 Sum_probs=67.3
Q ss_pred hCCCCCCeEEEecC------CCChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 65 SGAKTGDNVLDVCC------GSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~------G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
+..+.+.+|||+|+ -+|. .++++..|. +.++++|+.+-.. . .. .++++|......
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~~~s-----d---------a~-~~IqGD~~~~~~ 166 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDFVS-----D---------AD-STLIGDCATVHT 166 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCCBC-----S---------SS-EEEESCGGGEEE
T ss_pred EeecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCccccc-----C---------CC-eEEEcccccccc
Confidence 45677899999997 4454 344444565 5999999866320 0 12 459999766433
Q ss_pred CCCcccEEEeccccc---Cc--cc------HHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 138 SDCFFDAITMGYGLR---NV--VD------KRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~---~~--~~------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
.++||+|++...-. +. +. .+.++.-+.+.|+|||.+++-.+.....
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~ 223 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN 223 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH
Confidence 47899999754322 11 11 3566777888999999998877666553
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.059 Score=43.52 Aligned_cols=160 Identities=10% Similarity=0.052 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--------------------ccCCCeeEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------------------ACYKNIEWV 128 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------------------~~~~~~~~~ 128 (257)
+...|+-+|||.=.....+.....++..++=+|. |+.++.-++.+...+. -...+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4679999999986655555432113557777777 5565554444432110 002578899
Q ss_pred EccCCCC----------CCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHh
Q 025144 129 EGDALDL----------PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMID 196 (257)
Q Consensus 129 ~~d~~~~----------~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 196 (257)
..|+.+. .++.+..-++++-.++.+++ ....+++.+.+.. |+|.+++.+...+...+...+...+.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M~~~l~- 246 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIMIENLR- 246 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHHHHHHH-
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHHHHHHH-
Confidence 9999773 13445566788888888885 4677788888766 45666677766655544333322221
Q ss_pred hhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 197 NVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
....++ . ++..+.+.++..+.|.++||+.++..+.
T Consensus 247 ~~g~pl----~----------sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 247 RRQCDL----A----------GVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp TTTCCC----T----------TGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HhCCCC----c----------ccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 111111 0 1123557888899999999998765543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00032 Score=54.93 Aligned_cols=104 Identities=8% Similarity=-0.101 Sum_probs=80.3
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCcccEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDAI 145 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v 145 (257)
+..+||+=+|+|.+++.+++. ..+++.+|.++...+..+++++.. .++++++.|.... ..+...||+|
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~~-----~~~~V~~~D~~~~L~~l~~~~~~fdLV 163 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHFN-----KKVYVNHTDGVSKLNALLPPPEKRGLI 163 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCTT-----SCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred CCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCcC-----CcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence 457999999999999998863 479999999999999999998652 5899999997542 1234579999
Q ss_pred EecccccCcccHHHHHHHHHh--cccCCCEEEEEeecC
Q 025144 146 TMGYGLRNVVDKRKALEESFR--VLKPGSRISVLDFNK 181 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~~~~~ 181 (257)
++.-....-.+..+++..+.+ .+.++|++++.-+..
T Consensus 164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~ 201 (283)
T 2oo3_A 164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV 201 (283)
T ss_dssp EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence 998887755566777766666 446899988765443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0015 Score=51.06 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=44.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
+.+.++.... .++..|||..||+|..+....+. +.+++|+|+++..++.++++++.
T Consensus 201 l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 201 LIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHh
Confidence 3333444443 67889999999999999887765 57999999999999999998753
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.013 Score=48.28 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=57.9
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC--------CCCcc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--------SDCFF 142 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 142 (257)
.+++|+-||.|.++.-+.+. + ...+.++|+++.+.+..+.+. ++..++++|+.++.. ....+
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G-~~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~ 72 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G-FDVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPI 72 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T-CEEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred CeEEEEccCcCHHHHHHHHC-C-CcEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCe
Confidence 47999999999999998776 2 235779999999988887775 567788899987631 24679
Q ss_pred cEEEecccccCc
Q 025144 143 DAITMGYGLRNV 154 (257)
Q Consensus 143 D~v~~~~~l~~~ 154 (257)
|+|+.......+
T Consensus 73 D~i~ggpPCQ~f 84 (376)
T 3g7u_A 73 DGIIGGPPCQGF 84 (376)
T ss_dssp CEEEECCCCCTT
T ss_pred eEEEecCCCCCc
Confidence 999987776655
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0091 Score=49.07 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=68.1
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
...++.++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- --.++..+-.++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 252 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQLG---------ATHVINSKTQDPVAAIK 252 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcC---------CCEEecCCccCHHHHHH
Confidence 345678899999999986 88888888875 45 6999999998888876531 112232221111
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...++.+|+|+-.-. ....+....+.|+++|.+++...
T Consensus 253 ~~~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 253 EITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp HHTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred HhcCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 011236999985432 23567888999999999977644
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0067 Score=50.63 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCCCCeEEEecCCCChhHHHHH-HHhCCCceEEEEeCChhHHHHHHhhhhhhhhccC-CCeeEEEccCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLS-EQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY-KNIEWVEGDALD 134 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~d~~~ 134 (257)
..++..++|+||+.|..+..++ +..++..+|+++|+++...+..+++++....... +++.+++.-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 4688899999999999999888 4433337999999999999999988865100011 366666655544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0089 Score=49.67 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=69.5
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C---
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--- 136 (257)
...++.++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++. ...++..+-.+. .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~ 246 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLL--GAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQI 246 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHH
Confidence 345778899999999986 88888888876 45 899999999888877643 122333222221 0
Q ss_pred ---CCCCcccEEEecccccCc--------ccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 ---FSDCFFDAITMGYGLRNV--------VDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~--------~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+-.-.-... .+....+....+.|+++|.+++...
T Consensus 247 ~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 247 DQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp HHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred HHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 112369999854432210 0123467888899999999876543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=43.36 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=62.6
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+..++.+||..|+ |.|..+..++... +.+|+++|.+++.++.+++. + .. ..+ |..+..
T Consensus 33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~----g----~~-~~~--d~~~~~~~~~~ 99 (198)
T 1pqw_A 33 VGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL----G----VE-YVG--DSRSVDFADEI 99 (198)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT----C----CS-EEE--ETTCSTHHHHH
T ss_pred HhCCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C----CC-EEe--eCCcHHHHHHH
Confidence 346778899999995 4566677776664 57899999998877666432 1 11 122 222211
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...+.+|+++.+.. ...+....+.|+++|.++....
T Consensus 100 ~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 100 LELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp HHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred HHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 12246999986542 2457788899999999877543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.012 Score=52.56 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh------CC-----CceEEEEeC---ChhHHHHHHhhh-----------hhhhh----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV------GS-----QGKVIGLDF---SKNQLSMASSRQ-----------DLVSK---- 119 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~---s~~~~~~a~~~~-----------~~~~~---- 119 (257)
+.-+|+|+|.|+|.....+.+.+ +| ..+++.+|. +.+.+..+.... ...+.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44699999999999877665542 11 147999998 444444433221 11110
Q ss_pred -------ccCCCeeEEEccCCCC-C-CC---CCcccEEEecccccCc-cc--HHHHHHHHHhcccCCCEEE
Q 025144 120 -------ACYKNIEWVEGDALDL-P-FS---DCFFDAITMGYGLRNV-VD--KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 120 -------~~~~~~~~~~~d~~~~-~-~~---~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~Lk~gG~l~ 175 (257)
.+.-.+.+..+|+.+. + .. ++.+|.++....--.. ++ -..++..+.++++|||.+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 0012456777777542 2 21 4679999975422111 11 2778999999999999874
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.083 Score=40.89 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=71.2
Q ss_pred CCeEEEecCCCChhHHHHHHH---h---CCCceEEEEe-----CChh----------------------HHHHHHh---h
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQ---V---GSQGKVIGLD-----FSKN----------------------QLSMASS---R 113 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~---~---~~~~~v~~~D-----~s~~----------------------~~~~a~~---~ 113 (257)
+..|+|+|+-.|..+..++.. + ++..+++++| +.+. .++...+ +
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 458999999999988876542 2 3457999999 3210 0111111 1
Q ss_pred hhhhhhccCCCeeEEEccCCCC-C-----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 114 QDLVSKACYKNIEWVEGDALDL-P-----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+..+. ...++.++.+++.+. + .+.+++|+|.+..- ........++.+...|+|||++++-+++.
T Consensus 150 ~~~~g~-~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y~~t~~~le~~~p~l~~GGvIv~DD~~~ 220 (257)
T 3tos_A 150 SDFFGH-VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LYEPTKAVLEAIRPYLTKGSIVAFDELDN 220 (257)
T ss_dssp TSTTTT-SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CHHHHHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred hhhcCC-CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--ccchHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 111111 016899999999763 2 34567999998764 23445667999999999999998877643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.026 Score=50.26 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHh------CC-----CceEEEEeC---ChhHHHHHHhhhh-----------hhhh----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV------GS-----QGKVIGLDF---SKNQLSMASSRQD-----------LVSK---- 119 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~---s~~~~~~a~~~~~-----------~~~~---- 119 (257)
+.-+|||+|-|+|.......+.. +| ..+++.+|. +++.+..+..... ..+.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34599999999998876665543 11 246999998 7777764443211 1110
Q ss_pred -------ccCCCeeEEEccCCCC-C-CC---CCcccEEEecccccCc-cc--HHHHHHHHHhcccCCCEEE
Q 025144 120 -------ACYKNIEWVEGDALDL-P-FS---DCFFDAITMGYGLRNV-VD--KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 120 -------~~~~~~~~~~~d~~~~-~-~~---~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~Lk~gG~l~ 175 (257)
.....+.+..+|+.+. + .. ...+|+++....-... ++ -..++..+.+.++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 0002344566666542 1 11 3679999975422111 12 3678999999999999885
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.045 Score=44.13 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=54.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCC-ceE-EEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQ-GKV-IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDA 144 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~-~~v-~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~ 144 (257)
.-+++|+-||.|.++.-+.+. +-. ..+ .++|+++.+.+..+.+.. .. ++..|+.++. ++...+|+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~--------~~-~~~~DI~~~~~~~i~~~~~Di 79 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK--------EE-VQVKNLDSISIKQIESLNCNT 79 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC--------CC-CBCCCTTTCCHHHHHHTCCCE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC--------CC-cccCChhhcCHHHhccCCCCE
Confidence 348999999999999888765 221 345 699999998888877762 22 5678888764 22235899
Q ss_pred EEecccccCc
Q 025144 145 ITMGYGLRNV 154 (257)
Q Consensus 145 v~~~~~l~~~ 154 (257)
++.......+
T Consensus 80 l~ggpPCQ~f 89 (327)
T 3qv2_A 80 WFMSPPCQPY 89 (327)
T ss_dssp EEECCCCTTC
T ss_pred EEecCCccCc
Confidence 9987776655
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.032 Score=45.36 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=65.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.++.++.+||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++. + --.++ .+...+ . ..+|
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~v~-~~~~~~--~-~~~D 236 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALSM----G-----VKHFY-TDPKQC--K-EELD 236 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHHT----T-----CSEEE-SSGGGC--C-SCEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhc----C-----CCeec-CCHHHH--h-cCCC
Confidence 4778899999999975 78888888875 67999999999888877653 1 11222 332222 2 2799
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|+-.-.-. ..+....+.|+++|.+++...
T Consensus 237 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 237 FIISTIPTH------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp EEEECCCSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCcH------HHHHHHHHHHhcCCEEEEECC
Confidence 998533211 246677889999999987643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.022 Score=46.08 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=68.0
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--C--
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F-- 137 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~-- 137 (257)
...+..++.+||-.|+|. |..+..+++.. +.+|+++|.+++-++.+++.- --.++..+-.+.. .
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~~i~~~~~~~~~~~~~ 228 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARRLG---------AEVAVNARDTDPAAWLQK 228 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcC---------CCEEEeCCCcCHHHHHHH
Confidence 345678899999999975 88889999885 679999999999888776531 1122222211110 0
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+.+|+|+-... ....+....+.|+++|.+++...
T Consensus 229 ~~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 229 EIGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp HHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred hCCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 0136888875432 24567888899999999977643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0066 Score=49.39 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=55.3
Q ss_pred CeEEEecCCCChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 146 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 146 (257)
.+|+|+-||.|.++..+.+. +.. ..+.++|+++.+++..+.+. ++..++.+|+.++. ++...+|+++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEE
Confidence 47999999999999998876 221 36999999999999888886 45567888988764 1112589999
Q ss_pred ecccccCc
Q 025144 147 MGYGLRNV 154 (257)
Q Consensus 147 ~~~~l~~~ 154 (257)
.......+
T Consensus 74 ~gpPCq~f 81 (343)
T 1g55_A 74 MSPPCQPF 81 (343)
T ss_dssp ECCC----
T ss_pred EcCCCcch
Confidence 87775544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.09 E-value=0.24 Score=39.84 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=52.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~ 148 (257)
+.+++|+.||.|.++..+.+. + ...+.++|+++..++..+.+.. ... .+|+.++.. .-..+|+|+..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~--------~~~--~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFG--------EKP--EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHS--------CCC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcC--------CCC--cCCHHHcCHhhCCCCCEEEEC
Confidence 468999999999999988765 2 3468889999999888887763 222 577776531 11248999987
Q ss_pred ccccCc
Q 025144 149 YGLRNV 154 (257)
Q Consensus 149 ~~l~~~ 154 (257)
.....+
T Consensus 79 pPCQ~f 84 (327)
T 2c7p_A 79 FPCQAF 84 (327)
T ss_dssp CCCTTT
T ss_pred CCCCCc
Confidence 665554
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.033 Score=46.17 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=69.1
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LP---- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~---- 136 (257)
..++.++.+||-+|+|. |..+..+++.. +. .|+++|.+++-++.+++. ....+..+-.+ +.
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~--Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~ 247 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIA 247 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHH
Confidence 45678899999999875 88888888885 55 799999999888887643 11223222111 00
Q ss_pred --CCCCcccEEEeccccc---------CcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FSDCFFDAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-.-.-. +.+++...+....+.|+++|.+++..
T Consensus 248 ~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 248 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 1123699998543321 12334567888999999999987754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.033 Score=45.11 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=65.4
Q ss_pred hhhCCCCCCeEEEecCC--CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
...++.++.+||-+|+| .|..+..+++.. +++|+++|.+++-++.+++.- --.++...-.+..
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lg---------a~~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRLG---------AAYVIDTSTAPLYETVM 206 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhCC---------CcEEEeCCcccHHHHHH
Confidence 44577889999999987 577888888875 579999999998888776531 1122222212210
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+|+-+..- .. .....+.|+++|.++.....
T Consensus 207 ~~~~~~g~Dvvid~~g~------~~-~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 207 ELTNGIGADAAIDSIGG------PD-GNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp HHTTTSCEEEEEESSCH------HH-HHHHHHTEEEEEEEEECCCT
T ss_pred HHhCCCCCcEEEECCCC------hh-HHHHHHHhcCCCEEEEEeec
Confidence 123479999864331 12 23344789999999876543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.039 Score=45.00 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=66.6
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC---CCC--
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA---LDL-- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~---~~~-- 135 (257)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+. .+.
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 233 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKEIG---------ADLVLQISKESPQEIAR 233 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTT---------CSEEEECSSCCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhC---------CCEEEcCcccccchHHH
Confidence 345778899999999875 78888888875 56 8999999998888776431 112222220 010
Q ss_pred ---CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+.+|+|+-.-. ....+....+.|+++|.++....
T Consensus 234 ~i~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 234 KVEGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HHHHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHHHhCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEec
Confidence 000146999985332 23457788899999999987654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.1 Score=42.53 Aligned_cols=102 Identities=17% Similarity=0.223 Sum_probs=69.4
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC---CC--
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DL-- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-- 135 (257)
...+..++.+||-+|+|. |..+..+++.. +.+ |+++|.+++-++.+++. . ..+.....+.. ++
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-~-------~~~~~~~~~~~~~~~~~~ 242 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEI-C-------PEVVTHKVERLSAEESAK 242 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH-C-------TTCEEEECCSCCHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-c-------hhcccccccccchHHHHH
Confidence 456778899999999875 78888888885 565 99999999988888765 2 22222222211 00
Q ss_pred ----CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 ----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
......+|+|+-.-. ....+....+.|+++|.+++....
T Consensus 243 ~v~~~t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 243 KIVESFGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp HHHHHTSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECCCC
T ss_pred HHHHHhCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEccC
Confidence 012356999985332 234677888999999999876543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.095 Score=42.59 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=66.6
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCC----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~---- 136 (257)
...+..++.+||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++. + -. .++..+- .+..
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----G----AD-VTLVVDPAKEEESSII 230 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----T----CS-EEEECCTTTSCHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh----C----CC-EEEcCcccccHHHHHH
Confidence 345778899999999875 77888888874 56799999999888877643 1 11 2222221 1110
Q ss_pred --CC---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 --FS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 --~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.. .+.+|+|+-... ....+....+.|+++|.++....
T Consensus 231 ~~~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp HHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred HHhccccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 11 246999985432 13457788889999999977643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.027 Score=45.83 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=67.2
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
...++.++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+-.++.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~v~ 228 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALEYG---------ATDIINYKNGDIVEQIL 228 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHHHT---------CCEEECGGGSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhC---------CceEEcCCCcCHHHHHH
Confidence 456778899999999875 77888888874 55 8999999998888776541 1122222211110
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+-...- ...+....+.|+++|.++....
T Consensus 229 ~~t~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 229 KATDGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp HHTTTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHcCCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEecc
Confidence 123469999853321 2457778889999999987643
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.045 Score=44.20 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=66.3
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
...++.++.+||-.|+ |.|..+..+++.. +.+|+++|.+++-++.+.+.+ .--.++...-.+..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVEEL--------GFDGAIDYKNEDLAAGLK 212 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT--------CCSEEEETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc--------CCCEEEECCCHHHHHHHH
Confidence 4557788999999998 4577888888774 679999999998877773332 11122222111110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+.+.. ...+....+.|+++|.+++..
T Consensus 213 ~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 213 RECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp HHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEe
Confidence 11346999986443 246788889999999987754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.073 Score=43.75 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=67.9
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc--CCCC---
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD--ALDL--- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--~~~~--- 135 (257)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++... -.++
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 255 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAKKFG---------VNEFVNPKDHDKPIQEV 255 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHHTTT---------CCEEECGGGCSSCHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CcEEEccccCchhHHHH
Confidence 445778899999999974 88888888886 45 8999999999888776531 11222221 1111
Q ss_pred --CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+|+-.-. ....+....+.|++| |.+++...
T Consensus 256 i~~~~~gg~D~vid~~g------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 256 IVDLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHhcCCCCCEEEECCC------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 012347999985332 245678888999996 99887654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.075 Score=43.58 Aligned_cols=101 Identities=22% Similarity=0.205 Sum_probs=68.5
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
...++.++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++...-.++
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~i~ 244 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA--GATTVILSTRQATKRRLAEEVG---------ATATVDPSAGDVVEAIA 244 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHT---------CSEEECTTSSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcC---------CCEEECCCCcCHHHHHH
Confidence 456778899999999875 78888888875 55 8999999998888776531 112222111111
Q ss_pred C---CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 P---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
. ..++.+|+|+-.-. ....+....+.|+++|.+++....
T Consensus 245 ~~~~~~~gg~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 245 GPVGLVPGGVDVVIECAG------VAETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp STTSSSTTCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred hhhhccCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEecc
Confidence 0 22347999985322 245678888999999999876543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.064 Score=43.84 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=67.1
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
...+..++.+||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++. + --.++..+..++.
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~v~~ 251 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFAL----G-----ADHGINRLEEDWVERVYA 251 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----T-----CSEEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHHc----C-----CCEEEcCCcccHHHHHHH
Confidence 345678899999999875 78888888874 67999999999888877553 1 1223332211210
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+|+-...- ..+....+.|+++|.+++....
T Consensus 252 ~~~g~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 252 LTGDRGADHILEIAGG-------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp HHTTCCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEecC
Confidence 123469999864431 2356677889999999876543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.11 Score=42.51 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=66.7
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCC---
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~--- 135 (257)
...++.++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++..+- .++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l----G-----a~~vi~~~~~~~~~~~~ 253 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIEL----G-----ATECLNPKDYDKPIYEV 253 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHT----T-----CSEEECGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc----C-----CcEEEecccccchHHHH
Confidence 345678899999999875 77888888875 45 799999999888887643 1 112222111 111
Q ss_pred --CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+|+-.-. ....+....+.|+++ |.++....
T Consensus 254 i~~~t~gg~Dvvid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 254 ICEKTNGGVDYAVECAG------RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHHhCCCCCEEEECCC------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 011247999985332 135678888999999 99877543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.12 Score=42.42 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=66.6
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCC---
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~--- 135 (257)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++..+- .++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~ 252 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKEF----G-----ATECINPQDFSKPIQEV 252 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHH----T-----CSEEECGGGCSSCHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEeccccccccHHHH
Confidence 345678889999999875 77888888875 45 799999999888887643 1 112222111 111
Q ss_pred --CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+|+-.-. ....+....+.|+++ |.++....
T Consensus 253 v~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 253 LIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHhCCCCCEEEECCC------cHHHHHHHHHhhccCCcEEEEEec
Confidence 011246999985432 135678888999999 99877643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.071 Score=42.94 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=63.7
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC---
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LP--- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~--- 136 (257)
...+..++.+||-.|+ |.|..+..++... +.+|+++|.+++.++.+++. + .. ..+ |..+ ..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~----g----~~-~~~--d~~~~~~~~~ 205 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI----G----FD-AAF--NYKTVNSLEE 205 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T----CS-EEE--ETTSCSCHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C----Cc-EEE--ecCCHHHHHH
Confidence 3456778899999997 4577777777763 67999999998887777332 1 11 112 2222 10
Q ss_pred ----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+++.+.. ...+....+.|+++|.+++..
T Consensus 206 ~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 206 ALKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HHHHHhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence 11246999986554 134778889999999987754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.1 Score=42.78 Aligned_cols=100 Identities=10% Similarity=0.159 Sum_probs=66.3
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCCC--
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDLP-- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~~-- 136 (257)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+- .++.
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~ 254 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVFG---------ATDFVNPNDHSEPISQV 254 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTT---------CCEEECGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhC---------CceEEeccccchhHHHH
Confidence 345678889999999875 77888888874 55 7999999998888876431 112222111 1110
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...+.+|+|+-.-. ....+....+.|+++ |.+++...
T Consensus 255 ~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 255 LSKMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 11236999985332 135678888999999 99877643
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.045 Score=45.61 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhC---C-CceEEEEeCChhHHHHHHhhhhh
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG---S-QGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~---~-~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+|+|+|+|+|.++..+++.+. + ..+|+.+|+|+.+.+.=++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 46999999999999988876541 1 23899999999888776666643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.46 E-value=0.13 Score=42.21 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=66.1
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCC---
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~--- 135 (257)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+- .++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~ 253 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVG---------ATECVNPQDYKKPIQEV 253 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhC---------CceEecccccchhHHHH
Confidence 345678889999999875 77888888874 55 7999999998888776431 112222111 111
Q ss_pred --CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+|+-.-. ....+....+.|+++ |.+++...
T Consensus 254 ~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 254 LTEMSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred HHHHhCCCCcEEEECCC------CHHHHHHHHHHhhcCCcEEEEecc
Confidence 011246999985332 135677888999999 99877543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.024 Score=45.08 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=40.6
Q ss_pred CCeeEEEccCCCC-C-CCCCcccEEEecccccCcc--------------------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 123 KNIEWVEGDALDL-P-FSDCFFDAITMGYGLRNVV--------------------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 123 ~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~l~~~~--------------------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..++++|..+. . +++++||+|+++....... ....+++.+.++|||||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4678999998762 2 5578999999987654221 12456789999999999987653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.16 Score=42.12 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=63.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------C
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------F 137 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 137 (257)
.+.++.+||=+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+-.++. .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKELG---------ADHVIDPTKENFVEAVLDYT 278 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHT---------CSEEECTTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcC---------CCEEEcCCCCCHHHHHHHHh
Confidence 577889999999875 77888888875 56 8999999998888776541 1122322212210 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcc----cCCCEEEEEeec
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVL----KPGSRISVLDFN 180 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L----k~gG~l~~~~~~ 180 (257)
....+|+|+-.-. .....+..+.+.| +++|.+++....
T Consensus 279 ~g~g~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 279 NGLGAKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp TTCCCSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CCCCCCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 2346999984322 2223444444455 999999876543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.066 Score=43.01 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=66.1
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+..++.+||-.|+ |.|..+..+++.. +.+|++++.+++-++.+++. ..-.++..+-.+..
T Consensus 135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~---------Ga~~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 135 TYQVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKAL---------GAWETIDYSHEDVAKRVLE 203 (325)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH---------TCSEEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc---------CCCEEEeCCCccHHHHHHH
Confidence 346788999999983 4578888888875 57999999999888877643 11122322222210
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+|+-+..- ..+....+.|+++|.+++....
T Consensus 204 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 204 LTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp HTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence 123469999864431 3466788899999999876543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.089 Score=43.14 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=63.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-CCCCCc
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 141 (257)
.+..++.+||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++. + --.++...-.+ . ... +.
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~l----G-----a~~vi~~~~~~~~~~~~-~g 257 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL----G-----ADEVVNSRNADEMAAHL-KS 257 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----T-----CSEEEETTCHHHHHTTT-TC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C-----CcEEeccccHHHHHHhh-cC
Confidence 4678899999999975 77888888874 67899999999888887652 1 11222211100 0 111 46
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+|+-.-.-. ..+....+.|+++|.++...
T Consensus 258 ~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 258 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred CCEEEECCCCH------HHHHHHHHHhccCCEEEEec
Confidence 99998543321 23566778999999987654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.041 Score=44.01 Aligned_cols=93 Identities=14% Similarity=0.038 Sum_probs=62.4
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
...+..++.+||-+|+|. |..+..+++.. +.+|++++ +++-++.+++. + --.++. |...+ .+.
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~l----G-----a~~v~~-d~~~v---~~g 199 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAKR----G-----VRHLYR-EPSQV---TQK 199 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHHH----T-----EEEEES-SGGGC---CSC
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHHc----C-----CCEEEc-CHHHh---CCC
Confidence 456778899999999964 88888888886 56999999 88888877653 1 112222 32222 467
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+|+-.-.- ..+....+.|+++|.++...
T Consensus 200 ~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 200 YFAIFDAVNS-------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EEEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred ccEEEECCCc-------hhHHHHHHHhcCCCEEEEEe
Confidence 9999843221 12356778999999987763
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.13 Score=42.11 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=66.2
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCCC--
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDLP-- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~~-- 136 (257)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+- .++.
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 257 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKALG---------ATDCLNPRELDKPVQDV 257 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhC---------CcEEEccccccchHHHH
Confidence 345678889999999874 77888888875 55 7999999998888776431 112222111 1110
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...+.+|+|+-.-. ....+....+.|+++ |.+++...
T Consensus 258 v~~~~~~g~Dvvid~~G------~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 258 ITELTAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHHHTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHHhCCCccEEEECCC------CHHHHHHHHHHhhcCCCEEEEECC
Confidence 11236999985332 135678888999999 99877544
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.14 Score=41.84 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=65.7
Q ss_pred hhCCCCCCeEEEec--CCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVC--CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG--~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+..++.+||-.| +|.|..+..+++.. +.+|++++.+++-++.+++. + --.++..+-.++.
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~----G-----a~~~~~~~~~~~~~~~~~ 226 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKSL----G-----CDRPINYKTEPVGTVLKQ 226 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CSEEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHc----C-----CcEEEecCChhHHHHHHH
Confidence 34678889999999 45688888888874 67899999998877777652 1 1122222211110
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...+.+|+|+-... . ..+..+.+.|+++|.++....
T Consensus 227 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 227 EYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp HCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 11246999986543 1 467788899999999877543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.072 Score=43.16 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=65.4
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
......++.+||-.|+ |.|..+..+++.. +.+|++++.+++-++.+++. + .-.++..+ .++.
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----a~~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSV----G-----ADIVLPLE-EGWAKAVR 220 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----T-----CSEEEESS-TTHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----CcEEecCc-hhHHHHHH
Confidence 4456788999999997 4578888888874 67999999999888777653 1 12233333 2211
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-...- ..+....+.|+++|.+++..
T Consensus 221 ~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 221 EATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp HHTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred HHhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 123369999864432 24667888999999987754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.077 Score=42.78 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=64.4
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------
Q 025144 65 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------ 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------ 136 (257)
.+..++.+||-.|+ |.|..+..+++.. +.+|++++.+++-++.+++. ..-.++..+-.+..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~---------ga~~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKEY---------GAEYLINASKEDILRQVLKF 212 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc---------CCcEEEeCCCchHHHHHHHH
Confidence 46788999999994 4577888888874 67999999999888776553 11122322222210
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-+..- ..+....+.|+++|.++...
T Consensus 213 ~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 213 TNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp TTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred hCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence 123469999864431 34667788999999987754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.13 Score=41.68 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=65.1
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCC---
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLP--- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~--- 136 (257)
...+..++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++.+ + .-.++...- .++.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~~---g-----~~~~~d~~~~~~~~~~~ 218 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTKF---G-----FDDAFNYKEESDLTAAL 218 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTS---C-----CSEEEETTSCSCSHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---C-----CceEEecCCHHHHHHHH
Confidence 3456778899999997 4677778887774 579999999988877776332 1 111222111 1110
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+.+.. ...+....+.|+++|.+++..
T Consensus 219 ~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 219 KRCFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HHHhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 11246999986543 136788889999999987754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.51 Score=38.05 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=66.9
Q ss_pred HhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.......++.+||=.|+|. |..+..+++..+ ...++++|.+++-++.+++. .-..++..+-.+..
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~l---------Ga~~~i~~~~~~~~~~~~ 222 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKSF---------GAMQTFNSSEMSAPQMQS 222 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHH
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHHc---------CCeEEEeCCCCCHHHHHH
Confidence 3445678889999999975 667777777752 23678999999888877654 12233332222211
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.....+|+|+-.-. ....+....+.++++|.+++.....
T Consensus 223 ~~~~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 223 VLRELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp HHGGGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred hhcccCCccccccccc------ccchhhhhhheecCCeEEEEEeccC
Confidence 11245788774321 2456778889999999998765443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.13 Score=41.67 Aligned_cols=98 Identities=21% Similarity=0.190 Sum_probs=64.3
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+. ++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++..+-.++.
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~~----G-----a~~~~~~~~~~~~~~v~~ 230 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKKV----G-----ADYVINPFEEDVVKEVMD 230 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHH----T-----CSEEECTTTSCHHHHHHH
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----C-----CCEEECCCCcCHHHHHHH
Confidence 3466 888999999964 77788888774 56 899999998887777643 1 1112222111110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+-... ....+....+.|+++|.++....
T Consensus 231 ~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 231 ITDGNGVDVFLEFSG------APKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp HTTTSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred HcCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEcc
Confidence 11236999985432 23567788899999999877543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.89 Score=40.60 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-------CCCceEEEEeCChhHHHHHHhhhhhhhh-------------c--------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-------GSQGKVIGLDFSKNQLSMASSRQDLVSK-------------A-------- 120 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-------~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~-------- 120 (257)
+...|+-+|||.=.....|.... .++..++=+|. |+.++.-++.+...+. .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 45689999999866665554331 11345566665 4454444444432110 0
Q ss_pred cCCCeeEEEccCCCCC----------C-CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCC---c
Q 025144 121 CYKNIEWVEGDALDLP----------F-SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKST---Q 184 (257)
Q Consensus 121 ~~~~~~~~~~d~~~~~----------~-~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~---~ 184 (257)
...+..++..|+.+.. + ..+..-++++-.++.+++ +..++|+.+.+. ++|.+++.+...+. .
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCC
Confidence 0037889999998741 2 334455677778888885 467778888754 67777777755443 2
Q ss_pred hhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 185 PFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+...+ ..+.. ....... ....+.+.++..+.|.++||+.+...++
T Consensus 264 ~f~~~m----~~~~~-~~g~~l~----------~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 PFSKQM----LAHFK-RNDSPLQ----------SVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HHHHHH----HHHHH-HTTCCCC----------GGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred hHHHHH----HHHHH-HcCCCCC----------ccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 222222 21110 0000100 1123557889999999999987665543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.053 Score=43.84 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=56.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 146 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 146 (257)
-+++|+-||.|.+..-+.+. +.+ ..+.++|+++...+.-+.+. +...++..|+.++. ++...+|+++
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEE
Confidence 37999999999999988766 322 35789999999888877776 45567788888764 2223589999
Q ss_pred ecccccCc
Q 025144 147 MGYGLRNV 154 (257)
Q Consensus 147 ~~~~l~~~ 154 (257)
.......+
T Consensus 75 ggpPCQ~f 82 (333)
T 4h0n_A 75 MSPPCQPF 82 (333)
T ss_dssp ECCCCCCS
T ss_pred ecCCCcch
Confidence 87766655
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.093 Score=42.56 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=64.6
Q ss_pred hCCCCCCeEEEecCC--CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CC
Q 025144 65 SGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 137 (257)
.+..++.+||-.|+| .|..+..+++.. .+.+|+++|.+++.++.+++. + .. .++...-.+. ..
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA----G----AD-YVINASMQDPLAEIRRI 235 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh----C----CC-EEecCCCccHHHHHHHH
Confidence 567788999999998 466677777764 156899999999888777542 1 11 1222111111 01
Q ss_pred CC-CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.. +.+|+++.... ....+....+.|+++|.++....
T Consensus 236 ~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 236 TESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp TTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred hcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence 12 47999986443 23467788899999999877543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.18 Score=40.80 Aligned_cols=97 Identities=22% Similarity=0.247 Sum_probs=64.0
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------
Q 025144 65 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------ 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------ 136 (257)
.++.++.+||-.|+ |.|..+..+++.. +.+++++|.+++.++.+++. + .. .++..+-.+..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~----g----a~-~~~d~~~~~~~~~~~~~ 230 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKAL----G----AD-ETVNYTHPDWPKEVRRL 230 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTSTTHHHHHHHH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C----CC-EEEcCCcccHHHHHHHH
Confidence 36678899999998 5688888888874 67999999999888777542 1 11 12222111110
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+.... . ..+..+.+.|+++|.++....
T Consensus 231 ~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 231 TGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp TTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred hCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 11246999986554 2 235677788999999876543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.092 Score=42.58 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=64.1
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC---CCC---
Q 025144 65 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DLP--- 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~~--- 136 (257)
.+..++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. .++ |.. ++.
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~~----g----~~-~~~--d~~~~~~~~~~~ 231 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRSI----G----GE-VFI--DFTKEKDIVGAV 231 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHHT----T----CC-EEE--ETTTCSCHHHHH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHHc----C----Cc-eEE--ecCccHhHHHHH
Confidence 36778899999998 4577777777764 57999999988877766542 1 11 122 322 110
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..++.+|+|+.+.. ....++...+.|+++|.++....
T Consensus 232 ~~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 232 LKATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHHHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred HHHhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 01126899986543 23567888999999999877543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.31 Score=40.06 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=50.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhC------CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVG------SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
..+..-+|+|+|+|.|.++..+++.+. ...+|+.+|+|+...+.=++++... .++... .++.+++ +
T Consensus 77 g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp--~ 148 (387)
T 1zkd_A 77 DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVP--E 148 (387)
T ss_dssp TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSC--C
T ss_pred CCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcC--C
Confidence 344455899999999999998876542 2348999999998776555444321 234332 2333332 2
Q ss_pred CcccEEEecccccCcc
Q 025144 140 CFFDAITMGYGLRNVV 155 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~ 155 (257)
+ .=+|+++-++..++
T Consensus 149 ~-~~~viANE~fDAlP 163 (387)
T 1zkd_A 149 G-PAVILANEYFDVLP 163 (387)
T ss_dssp S-SEEEEEESSGGGSC
T ss_pred C-CeEEEeccccccCc
Confidence 2 34666666666554
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.11 Score=41.77 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=63.7
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+..++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. .++..+-.+..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA----G----AW-QVINYREEDLVERLKE 203 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C----CC-EEEECCCccHHHHHHH
Confidence 346778899999994 4577777777764 57999999998877777542 1 11 12221111110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+++.+.. ...++.+.+.|+++|.++....
T Consensus 204 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 11246999986554 2346778889999999877643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.096 Score=42.13 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..++..|||.-||+|..+....+. +.+++++|+++...+.+++++..
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 467889999999999988776654 67999999999999999999854
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.063 Score=43.50 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=64.2
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cC-CCCCCCC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DA-LDLPFSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~-~~~~~~~ 139 (257)
+. ++.+||-+|+|. |..+..+++...++.+|+++|.+++-++.+++.- --.++.. |. ..+. ..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~~-~g 236 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELG---------ADYVSEMKDAESLINKLT-DG 236 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHT---------CSEEECHHHHHHHHHHHH-TT
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhC---------CCEEeccccchHHHHHhh-cC
Confidence 56 889999999974 7778888887522578999999998888776531 1111211 10 0111 12
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+|+|+-.-. ....+....+.|+++|.++....
T Consensus 237 ~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 237 LGASIAIDLVG------TEETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp CCEEEEEESSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CCccEEEECCC------ChHHHHHHHHHhhcCCEEEEeCC
Confidence 36999985432 13467888899999999877543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.16 Score=41.35 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=63.4
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC--CCCCC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL--PFSDC 140 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~ 140 (257)
.++.++.+||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++. + --.++..+-. +. ... +
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~v~~~~~~~~~~~~~~-~ 242 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----G-----ADHYIATLEEGDWGEKYF-D 242 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----T-----CSEEEEGGGTSCHHHHSC-S
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHc----C-----CCEEEcCcCchHHHHHhh-c
Confidence 5678899999999864 77888888875 56899999999888877653 1 1122222111 11 011 4
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+|+|+-.-.-.. ...+....+.|+++|.++...
T Consensus 243 ~~D~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 243 TFDLIVVCASSLT----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp CEEEEEECCSCST----TCCTTTGGGGEEEEEEEEECC
T ss_pred CCCEEEECCCCCc----HHHHHHHHHHhcCCCEEEEec
Confidence 6999986443200 122445778899999987654
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.14 Score=40.59 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CC-CCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FS-DCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~~ 142 (257)
....+++|+-||.|.+..-+.+. +-... +.++|+++...+..+.+. +...++.+|+.++. ++ .+.+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~ 84 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPF 84 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCc
Confidence 34558999999999999888765 22222 589999998887766654 45567889988764 11 1368
Q ss_pred cEEEeccccc
Q 025144 143 DAITMGYGLR 152 (257)
Q Consensus 143 D~v~~~~~l~ 152 (257)
|+++......
T Consensus 85 Dll~ggpPCQ 94 (295)
T 2qrv_A 85 DLVIGGSPCN 94 (295)
T ss_dssp SEEEECCCCG
T ss_pred CEEEecCCCc
Confidence 9999755433
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.15 Score=41.40 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=63.1
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..++.++.+||-.|+ |.|..+..+++.. +.+|++++.+++.++.+++. + .-.++..+-.+..
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----a~~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQN----G-----AHEVFNHREVNYIDKIKK 233 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CSEEEETTSTTHHHHHHH
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHHc----C-----CCEEEeCCCchHHHHHHH
Confidence 346778899999997 4577777777774 67999999998877766432 1 1122222111110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+++.+.. ...+....+.|+++|.++...
T Consensus 234 ~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 11236999986543 135677888999999987754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.13 Score=41.35 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=43.9
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh---hHHHHHHhhhhh
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK---NQLSMASSRQDL 116 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~ 116 (257)
.+.+.++... ..++..|||.-||+|..+....+. +.+++++|+++ ...+.+++++..
T Consensus 230 ~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 230 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHH
Confidence 3334444444 367889999999999998887766 57999999999 999999988753
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.21 Score=40.15 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=63.8
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+..++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. .++..+-.+..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~----g----~~-~~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARKL----G----CH-HTINYSTQDFAEVVRE 208 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C----CC-EEEECCCHHHHHHHHH
Confidence 346778899999995 5677888887774 67999999998777776542 1 11 12222111110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+++.+..- ..++...+.|+++|.++....
T Consensus 209 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 112469999865432 346778889999999877643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.13 Score=41.70 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------CC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FS 138 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 138 (257)
...++.+||-+|+|. |..+..+++.. .+.+|+++|.+++-++.+++.- --.++..+- +.. ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~lG---------a~~~i~~~~-~~~~~v~~~t~ 236 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALAREVG---------ADAAVKSGA-GAADAIRELTG 236 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHHTT---------CSEEEECST-THHHHHHHHHG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC---------CCEEEcCCC-cHHHHHHHHhC
Confidence 567889999999875 78888888875 3579999999999888876541 112222221 110 11
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
...+|+|+-.-. ....+....+.|+++|.+++....
T Consensus 237 g~g~d~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 237 GQGATAVFDFVG------AQSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp GGCEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred CCCCeEEEECCC------CHHHHHHHHHHHhcCCEEEEECCC
Confidence 236999985332 234778889999999999876543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.21 Score=40.37 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=64.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-----
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS----- 138 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~----- 138 (257)
.+..++.+||-+|+| .|..+..+++.. +.+|+++|.+++-++.+++. + --.++ |..+..+.
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~~~--d~~~~~~~~~~~~ 226 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKEL----G-----ADLVV--NPLKEDAAKFMKE 226 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----T-----CSEEE--CTTTSCHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHC----C-----CCEEe--cCCCccHHHHHHH
Confidence 367888999999986 477788888774 57999999999888877542 1 11122 22211100
Q ss_pred -CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 -DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.+|+|+-... ....+....+.|+++|.++....
T Consensus 227 ~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 227 KVGGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp HHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred HhCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEecc
Confidence 036899985432 13567788889999999876543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.24 Score=40.28 Aligned_cols=99 Identities=9% Similarity=0.047 Sum_probs=64.2
Q ss_pred hhhCCCCC--CeEEEecC--CCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--
Q 025144 63 SWSGAKTG--DNVLDVCC--GSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-- 135 (257)
Q Consensus 63 ~~~~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-- 135 (257)
...+..++ .+||-.|+ |.|..+..+++.. +. +|+++|.+++-++.+++.+ + .-.++..+-.+.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~~---g-----~~~~~d~~~~~~~~ 221 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSEL---G-----FDAAINYKKDNVAE 221 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTS---C-----CSEEEETTTSCHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc---C-----CceEEecCchHHHH
Confidence 34567788 99999997 4567777777763 66 9999999987777665533 1 111222111111
Q ss_pred ---CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+.+|+++.+.. ...+....+.|+++|.+++..
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 011126999986543 256788889999999987754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.15 Score=42.00 Aligned_cols=99 Identities=20% Similarity=0.121 Sum_probs=64.9
Q ss_pred hhC-CCCCCeEEEecCCC-ChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc---CCCC--
Q 025144 64 WSG-AKTGDNVLDVCCGS-GDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDL-- 135 (257)
Q Consensus 64 ~~~-~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~~-- 135 (257)
..+ +.++.+||-+|+|. |..+..+++.. + .+|+++|.+++-++.+++. + --.++..+ -.++
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~ 257 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEEI----G-----ADLTLNRRETSVEERRK 257 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHHT----T-----CSEEEETTTSCHHHHHH
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHHHc----C-----CcEEEeccccCcchHHH
Confidence 346 77889999999764 77888888874 5 4999999999888877643 1 11222222 0010
Q ss_pred ---C-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 ---P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ---~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
. .....+|+|+-.-.- ...+....+.|+++|.++....
T Consensus 258 ~v~~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 258 AIMDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp HHHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 0 122369999854321 2356778889999999877643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.058 Score=43.40 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=41.6
Q ss_pred CCeeEEEccCCC-CC-CCCCcccEEEecccccCc--------------ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 123 KNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNV--------------VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 123 ~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....++++|..+ +. ++++++|+|++......- ......++.++++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 467788888765 32 567889999997665322 135778899999999999997753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.16 Score=41.21 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
...++.++.+||-.|+ |.|..+..+++.. +.+|+++|.+++-++.+++. + --.++..+-.+..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~~~~~~~~~~~~~~~ 229 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERL----G-----AKRGINYRSEDFAAVIK 229 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T-----CSEEEETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----CCEEEeCCchHHHHHHH
Confidence 3456788999999953 3577888888874 67999999999888877653 1 1122222221110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...+.+|+|+....- ..+....+.|+++|.+++...
T Consensus 230 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 230 AETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp HHHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred HHhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 013469999865432 246677889999999877643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.2 Score=40.71 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=62.8
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------ 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------ 135 (257)
..++.++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. .++..+-.+.
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~ 225 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKL----G----AA-AGFNYKKEDFSEATLK 225 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C----Cc-EEEecCChHHHHHHHH
Confidence 346778899999984 4577777777764 67999999999887777432 1 11 1222221111
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
......+|+++.+..- ..+....+.|+++|.++....
T Consensus 226 ~~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 226 FTKGAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp HTTTSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred HhcCCCceEEEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 0122469999865432 135667788999999877643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.32 Score=39.66 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCeEEEec-CC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CCCCCc
Q 025144 69 TGDNVLDVC-CG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 141 (257)
++.+||-.| +| .|..+..+++.+ .+.+|+++|.+++-++.+++. + --.++... .++ ....+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~l----G-----ad~vi~~~-~~~~~~v~~~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKSL----G-----AHHVIDHS-KPLAAEVAALGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHT----T-----CSEEECTT-SCHHHHHHTTCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHc----C-----CCEEEeCC-CCHHHHHHHhcCCC
Confidence 678999998 44 488888888864 367999999999888877653 1 11122111 111 122357
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+|+-... ....+..+.+.|+++|.+++.
T Consensus 240 ~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 999885322 345678888999999999876
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.81 Score=31.49 Aligned_cols=93 Identities=15% Similarity=0.050 Sum_probs=55.5
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 70 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 70 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
..+|+=+|+|. |......+.. .+.+|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence 35789998864 4333333333 36799999999988777654 25678888887632 12246898
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++...-. .....+-...+.+.|+..++..
T Consensus 75 vi~~~~~~---~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 75 LILTIPNG---YEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp EEECCSCH---HHHHHHHHHHHHHCSSSEEEEE
T ss_pred EEEECCCh---HHHHHHHHHHHHHCCCCeEEEE
Confidence 88643211 1112233345556677776543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.54 Score=37.90 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=63.7
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
+.....++.+||=+|+|. |..+..+++.. .+.+|+++|.+++-++.+++.- --.++...-.+..
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~G---------a~~~i~~~~~~~~~~v~~ 226 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKIG---------ADVTINSGDVNPVDEIKK 226 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHTT---------CSEEEEC-CCCHHHHHHH
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhcC---------CeEEEeCCCCCHHHHhhh
Confidence 345678899999999986 45555666653 4679999999998777766542 1222222211110
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|.++.... -...+....+.|+++|.+++...
T Consensus 227 ~t~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 227 ITGGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp HTTSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred hcCCCCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence 12234666664322 24567788899999999877543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.34 Score=39.16 Aligned_cols=91 Identities=12% Similarity=0.183 Sum_probs=60.4
Q ss_pred CCCeEEEec-CC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CCCCCc
Q 025144 69 TGDNVLDVC-CG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 141 (257)
++.+||-.| +| .|..+..+++.. +.+|++++.+++-++.+++. + --.++..+ .++ ....+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~-~~~~~~~~~~~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKKM----G-----ADIVLNHK-ESLLNQFKTQGIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHHH----T-----CSEEECTT-SCHHHHHHHHTCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----CcEEEECC-ccHHHHHHHhCCCC
Confidence 788999994 44 477888888874 67999999999888877653 1 11222111 111 012346
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+|+-... ....+..+.+.|+++|.++..
T Consensus 218 ~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 218 VDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred ccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 999985332 345677888999999998654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.19 Score=40.89 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=60.5
Q ss_pred CCCCC------CeEEEecCCC-ChhH-HHHH-HHhCCCce-EEEEeCChh---HHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 66 GAKTG------DNVLDVCCGS-GDLS-FLLS-EQVGSQGK-VIGLDFSKN---QLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 66 ~~~~~------~~vLdiG~G~-G~~~-~~l~-~~~~~~~~-v~~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
+..++ .+||-+|+|. |..+ ..++ +.. +.+ |+++|.+++ -++.+++. ....+ |.
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~ 228 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DS 228 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ET
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CC
Confidence 44567 8999999854 6677 7777 653 566 999999887 77777542 11112 22
Q ss_pred CCCCCC-----CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 133 LDLPFS-----DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 133 ~~~~~~-----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+..+. .+.+|+|+-.-. ....+....+.|+++|.++....
T Consensus 229 ~~~~~~~i~~~~gg~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 229 RQTPVEDVPDVYEQMDFIYEATG------FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp TTSCGGGHHHHSCCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CccCHHHHHHhCCCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEeC
Confidence 211100 236899984332 23467788899999999877644
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.51 Score=37.65 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=60.2
Q ss_pred eEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCC-CCCCCcccEEEe
Q 025144 72 NVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL-PFSDCFFDAITM 147 (257)
Q Consensus 72 ~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~-~~~~~~~D~v~~ 147 (257)
+||=.|+ |.|..+..+++.. +.+|++++.+++-++.+++. + --.++. .+.... ....+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKSL----G-----ANRILSRDEFAESRPLEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----T-----CSEEEEGGGSSCCCSSCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----CCEEEecCCHHHHHhhcCCCccEEEE
Confidence 4999997 4588889999885 67999999999888888653 1 111121 111111 123457998874
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.-. ...+....+.|+++|.++....
T Consensus 218 ~~g-------~~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 218 TVG-------DKVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp SSC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCC-------cHHHHHHHHHHhcCCEEEEEec
Confidence 321 2378889999999999987643
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.81 E-value=0.55 Score=39.60 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=64.1
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------
Q 025144 65 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------ 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------ 136 (257)
..+.++.+||=+|+ | .|..+..+++.. +.++++++.+++-++.+++. + --.++...-.+..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~d~~~~~~~~ 292 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRAM----G-----AEAIIDRNAEGYRFWKDEN 292 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T-----CCEEEETTTTTCCSEEETT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHhh----C-----CcEEEecCcCccccccccc
Confidence 46788999999997 4 578888888874 67899999888888877553 1 1122221111110
Q ss_pred -----------------CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 -----------------FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 -----------------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-.-. ...+....+.|+++|.+++..
T Consensus 293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp EECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEe
Confidence 11246999985332 246778888999999997754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.69 E-value=1.5 Score=30.04 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=45.3
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
..+|+=+|+| ..+..+++.+ ..+.+|+++|.+++.++.+++ ....++.+|..+.. ..-..+|+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence 3579999885 4555554433 136799999999987766653 24677888887632 12346898
Q ss_pred EEeccc
Q 025144 145 ITMGYG 150 (257)
Q Consensus 145 v~~~~~ 150 (257)
|+....
T Consensus 74 vi~~~~ 79 (141)
T 3llv_A 74 VLITGS 79 (141)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 886443
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.56 E-value=2 Score=36.47 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=53.6
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC------------
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS------------ 138 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~------------ 138 (257)
-+++|+-||.|.++.-+.+. + ...+.++|+++...+.-+.+.... +...++..|+.++...
T Consensus 89 ~~viDLFaG~GGlslG~~~a-G-~~~v~avE~d~~A~~ty~~N~~~~-----p~~~~~~~DI~~i~~~~~~~~~~~~~~~ 161 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI-G-GQCVFTSEWNKHAVRTYKANHYCD-----PATHHFNEDIRDITLSHQEGVSDEAAAE 161 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT-T-EEEEEEECCCHHHHHHHHHHSCCC-----TTTCEEESCTHHHHCTTCTTSCHHHHHH
T ss_pred ceEEEecCCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHhcccC-----CCcceeccchhhhhhccccccchhhHHh
Confidence 48999999999999888654 1 235889999998877776665211 3456677887654311
Q ss_pred -----CCcccEEEecccccCcc
Q 025144 139 -----DCFFDAITMGYGLRNVV 155 (257)
Q Consensus 139 -----~~~~D~v~~~~~l~~~~ 155 (257)
...+|+++.......+.
T Consensus 162 ~i~~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 162 HIRQHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHHHHSCCCSEEEEECCCCCC-
T ss_pred hhhhcCCCCCEEEecCCCcchh
Confidence 13589999877666553
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.13 Score=39.83 Aligned_cols=54 Identities=4% Similarity=0.004 Sum_probs=35.4
Q ss_pred CeeEEEccCCCC--CCCCCcccEEEecccccCc--------------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 124 NIEWVEGDALDL--PFSDCFFDAITMGYGLRNV--------------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 124 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...++++|..+. .++++++|+|++......- .-....++.++++|+|||.+++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666666432 1345688888886554321 12456788889999999998765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.74 Score=37.49 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=58.1
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCCh---hHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC--C--CCC
Q 025144 70 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSK---NQLSMASSRQDLVSKACYKNIEWVEGDALD-LP--F--SDC 140 (257)
Q Consensus 70 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~--~--~~~ 140 (257)
+.+||-+|+|. |..+..+++.. +.+|+++|.++ +-++.+++. + ...+ | .+ +. . ..+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~~----g------a~~v--~-~~~~~~~~~~~~~ 245 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEET----K------TNYY--N-SSNGYDKLKDSVG 245 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHHH----T------CEEE--E-CTTCSHHHHHHHC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHHh----C------Ccee--c-hHHHHHHHHHhCC
Confidence 88999999853 66677777775 56999999987 666665532 1 1222 2 22 11 0 014
Q ss_pred cccEEEecccccCcccHHHHH-HHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKAL-EESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l-~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+|+|+...... ..+ +...+.|+++|.++.....
T Consensus 246 ~~d~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 246 KFDVIIDATGAD------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp CEEEEEECCCCC------THHHHHHGGGEEEEEEEEECSCC
T ss_pred CCCEEEECCCCh------HHHHHHHHHHHhcCCEEEEEecC
Confidence 699998654321 245 7788999999998776543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.23 Score=40.44 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=61.5
Q ss_pred hCCC-CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC-CCCCC
Q 025144 65 SGAK-TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL-PFSDC 140 (257)
Q Consensus 65 ~~~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~ 140 (257)
.... ++.+||-+|+|. |..+..+++.. +.+|+++|.+++-++.+++.+ + --.++..+-. .. .. .+
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~~l---G-----a~~vi~~~~~~~~~~~-~~ 243 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQDL---G-----ADDYVIGSDQAKMSEL-AD 243 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHTTS---C-----CSCEEETTCHHHHHHS-TT
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHc---C-----CceeeccccHHHHHHh-cC
Confidence 4566 888999999874 77788888875 568999999988777776333 1 1112211100 00 01 13
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+|+-.-.-. ..+....+.|+++|.++....
T Consensus 244 g~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 244 SLDYVIDTVPVH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp TEEEEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred CCCEEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence 699998543211 124456788999999877543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.77 Score=36.60 Aligned_cols=96 Identities=24% Similarity=0.184 Sum_probs=60.2
Q ss_pred hhhCCCCCCeEEEec-CC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CCCCC
Q 025144 63 SWSGAKTGDNVLDVC-CG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSD 139 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 139 (257)
...+..++.+||=+| +| .|..+..+++.. +.++++++ +++-.+.+++. + --.++..+-.+ +.-.-
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~~l----G-----a~~~i~~~~~~~~~~~~ 213 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLKAL----G-----AEQCINYHEEDFLLAIS 213 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHHHH----T-----CSEEEETTTSCHHHHCC
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHHHc----C-----CCEEEeCCCcchhhhhc
Confidence 456788899999997 44 588888888885 67899887 45445555432 2 11233222222 11011
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+|+|+-.-. ...+....+.|+++|.++..
T Consensus 214 ~g~D~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 214 TPVDAVIDLVG-------GDVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp SCEEEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred cCCCEEEECCC-------cHHHHHHHHhccCCCEEEEe
Confidence 46899885332 12337888999999998765
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.24 Score=40.51 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=60.7
Q ss_pred hCCC-CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC-CCCCC
Q 025144 65 SGAK-TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL-PFSDC 140 (257)
Q Consensus 65 ~~~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~ 140 (257)
.... ++.+||-+|+|. |..+..+++.. +.+|++++.+++-++.+.+.+. --.++..+-. .+ .. .+
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~lG--------a~~v~~~~~~~~~~~~-~~ 250 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALKNFG--------ADSFLVSRDQEQMQAA-AG 250 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHTSC--------CSEEEETTCHHHHHHT-TT
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcC--------CceEEeccCHHHHHHh-hC
Confidence 4566 888999999864 67777788774 5789999999988777664431 1112211100 00 01 13
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+|+-.-.... .++...+.|+++|.++....
T Consensus 251 ~~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 251 TLDGIIDTVSAVH------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp CEEEEEECCSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred CCCEEEECCCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence 6999986443221 23456677899999876543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.74 E-value=0.58 Score=37.42 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=60.6
Q ss_pred hCCCCCC-eEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cC-CC-C-CC
Q 025144 65 SGAKTGD-NVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DA-LD-L-PF 137 (257)
Q Consensus 65 ~~~~~~~-~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~-~~-~-~~ 137 (257)
.+..++. +||-.|+ |.|..+..+++.. +.++++++.+++-++.+++. +. . .++.. +. .+ . ..
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~l----Ga----~-~~i~~~~~~~~~~~~~ 212 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL----GA----K-EVLAREDVMAERIRPL 212 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT----TC----S-EEEECC---------C
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc----CC----c-EEEecCCcHHHHHHHh
Confidence 3566664 8999997 4578888888875 57899999998877777542 11 1 11111 11 01 0 12
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+.+|+|+-.-.- ..+....+.++++|.+++..
T Consensus 213 ~~~~~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 213 DKQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp CSCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECS
T ss_pred cCCcccEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 23469998854321 14667788999999987754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.50 E-value=0.18 Score=39.98 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCC--CCCCCc
Q 025144 67 AKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDL--PFSDCF 141 (257)
Q Consensus 67 ~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~--~~~~~~ 141 (257)
..++.+||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + --.++..+- .+. .. +.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----a~~~~~~~~~~~~~~~~--~~ 189 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLAL----G-----AEEAATYAEVPERAKAW--GG 189 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHT----T-----CSEEEEGGGHHHHHHHT--TS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C-----CCEEEECCcchhHHHHh--cC
Confidence 678899999997 4577888888874 57999999998877777542 1 111222111 111 01 46
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+|+. ..- ..+....+.|+++|.++...
T Consensus 190 ~d~vid-~g~-------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 190 LDLVLE-VRG-------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEEEE-CSC-------TTHHHHHTTEEEEEEEEEC-
T ss_pred ceEEEE-CCH-------HHHHHHHHhhccCCEEEEEe
Confidence 999986 331 24677888999999987653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.11 Score=42.48 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=56.2
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 70 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
+.+|+=+|+|. |..+...+... +.+|+++|.+++-++.+++... ..+.....+..++.-.-..+|+|+..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-------SRVELLYSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-------GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhC-------ceeEeeeCCHHHHHHHHcCCCEEEEC
Confidence 47999999863 55566666664 5699999999988777765432 12222221111110001248999865
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-.......+.-+.+...+.+++||.++.+.
T Consensus 238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 238 VLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 433221111111334567789999876543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.11 Score=42.88 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=55.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
++.+|+=+|+|. |......+..+ +.+|+++|.+++.++.+++.+. ..+.....+..++.-.-...|+|+.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g-------~~~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFC-------GRIHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTT-------TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcC-------CeeEeccCCHHHHHHHHcCCCEEEE
Confidence 467999999864 55555555554 5699999999988777665431 1221111111111000124799986
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-.......+.-+.+...+.+||||.++.+.
T Consensus 238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 4322211111112345667789999876543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.79 Score=36.66 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=62.3
Q ss_pred hCCCCCC-eEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-c--CCCC-CC
Q 025144 65 SGAKTGD-NVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D--ALDL-PF 137 (257)
Q Consensus 65 ~~~~~~~-~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d--~~~~-~~ 137 (257)
.+..++. +||-.|+ |.|..+..+++.. +.++++++.+++-++.+++. + --.++.. + .... ..
T Consensus 145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~l----G-----a~~v~~~~~~~~~~~~~~ 213 (330)
T 1tt7_A 145 NGLSPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL----G-----ASEVISREDVYDGTLKAL 213 (330)
T ss_dssp TTCCGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH----T-----CSEEEEHHHHCSSCCCSS
T ss_pred cCcCCCCceEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C-----CcEEEECCCchHHHHHHh
Confidence 3566664 8999997 3577888888875 56899999988877777542 1 1111111 1 1111 12
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+.+|+|+-.-. . ..+....+.++++|.+++...
T Consensus 214 ~~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 214 SKQQWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp CCCCEEEEEESCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred hcCCccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence 2346999885432 1 357788899999999877543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.33 E-value=1.1 Score=37.57 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=62.9
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc---cCCCC----
Q 025144 65 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALDL---- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~---- 135 (257)
.++.++.+||-.|+ | .|..+..+++.. +.++++++.+++-++.+++. +. . .++.. |..+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~l----Ga----~-~~i~~~~~~~~~~~~~~ 284 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRAL----GC----D-LVINRAELGITDDIADD 284 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----TC----C-CEEEHHHHTCCTTGGGC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CC----C-EEEeccccccccccccc
Confidence 56788999999997 3 477888888874 67999999988888777543 11 1 11211 11000
Q ss_pred ----------------CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 ----------------PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ----------------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
......+|+|+-... ...+....+.|+++|.++...
T Consensus 285 ~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 285 PRRVVETGRKLAKLVVEKAGREPDIVFEHTG-------RVTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSEEEECSC-------HHHHHHHHHHSCTTCEEEESC
T ss_pred ccccchhhhHHHHHHHHHhCCCceEEEECCC-------chHHHHHHHHHhcCCEEEEEe
Confidence 000246899986443 135677888999999997754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.66 Score=37.44 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=62.6
Q ss_pred hhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
....+.++.+||-+|+ | .|..+..+++.. +.+|+++ .+++-++.+++. + ...+. +..+..
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~l----G------a~~i~-~~~~~~~~~~ 209 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRDL----G------ATPID-ASREPEDYAA 209 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHHH----T------SEEEE-TTSCHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHHc----C------CCEec-cCCCHHHHHH
Confidence 4456788999999994 3 578888888874 6789999 788777766543 1 11122 222211
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-.-. ...+....+.|+++|.++...
T Consensus 210 ~~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 210 EHTAGQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp HHHTTSCEEEEEESSC-------THHHHHHHHHEEEEEEEEESC
T ss_pred HHhcCCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEEc
Confidence 12346999985432 146777888999999987653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.73 Score=36.91 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=52.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEeccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 150 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 150 (257)
+|+|+=||.|.++.-+.+. + ..-+.++|+++.+.+.-+.+. .-.++.+|+.++.. .-...|+++....
T Consensus 2 kvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred eEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCC
Confidence 6999999999999888655 2 335779999999888777664 23577889887641 1135899997665
Q ss_pred ccCc
Q 025144 151 LRNV 154 (257)
Q Consensus 151 l~~~ 154 (257)
.+.+
T Consensus 71 CQ~f 74 (331)
T 3ubt_Y 71 SQSW 74 (331)
T ss_dssp GGGT
T ss_pred CCCc
Confidence 5544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.14 E-value=1.9 Score=31.07 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=52.4
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-C-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----C-CCCcc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG-S-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----F-SDCFF 142 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~-~~~~~ 142 (257)
+.+|+=+|+| ..+..+++.+. . +.+|+++|.+++.++.+++ ..+.++.+|..+.. . .-..+
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence 4589999875 44444443321 2 5689999999987766543 24556777765421 1 23468
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+|+.... .. .....+-...+.+.|++.++..
T Consensus 107 d~vi~~~~--~~-~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 107 KLVLLAMP--HH-QGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp CEEEECCS--SH-HHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEEeCC--Ch-HHHHHHHHHHHHHCCCCEEEEE
Confidence 98886432 11 1122222344455666676554
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.99 Score=31.78 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=55.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CC----CCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PF----SDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~----~~~~~D~v 145 (257)
.-|||+|-|+|+.--++.+.+ |+.++.++|-.-.. .+....+.-.++.+|+.+. +. -..+.-++
T Consensus 42 GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR~~~~----------hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~La 110 (174)
T 3iht_A 42 GPVYELGLGNGRTYHHLRQHV-QGREIYVFERAVAS----------HPDSTPPEAQLILGDIRETLPATLERFGATASLV 110 (174)
T ss_dssp SCEEEECCTTCHHHHHHHHHC-CSSCEEEEESSCCC----------CGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEE
T ss_pred CceEEecCCCChhHHHHHHhC-CCCcEEEEEeeecc----------CCCCCCchHheecccHHHHHHHHHHhcCCceEEE
Confidence 369999999999999999997 78899999942110 0000013345677776652 11 02223333
Q ss_pred EecccccCccc----HHHHHHHHHhcccCCCEEEEE
Q 025144 146 TMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 146 ~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
......++-+. ...+-.-+..+|.|||.++-.
T Consensus 111 HaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~ 146 (174)
T 3iht_A 111 HADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS 146 (174)
T ss_dssp EECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 33333333321 112233456688999988643
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.087 Score=42.66 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=62.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
..+. ++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++. . . .++..+-.++.
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a-------~--~v~~~~~~~~~~~~~~ 226 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A-------D--RLVNPLEEDLLEVVRR 226 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C-------S--EEECTTTSCHHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H-------H--hccCcCccCHHHHHHH
Confidence 4466 889999999864 77788888774 56 899999988766655432 1 1 11111111110
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+-.-. ....++...+.|+++|.++....
T Consensus 227 ~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 227 VTGSGVEVLLEFSG------NEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp HHSSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 00246999985432 13567788899999999877543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.67 E-value=1.5 Score=35.77 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=58.6
Q ss_pred CCCCCeEEEec-CC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCc
Q 025144 67 AKTGDNVLDVC-CG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 141 (257)
Q Consensus 67 ~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 141 (257)
..++.+||-.| +| .|..+..+++.. +.+|++++ +++-.+.+++. + --.++..+-.++. .....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~~l----G-----a~~v~~~~~~~~~~~~~~~~g 248 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVRKL----G-----ADDVIDYKSGSVEEQLKSLKP 248 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHHT----T-----CSEEEETTSSCHHHHHHTSCC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHHHc----C-----CCEEEECCchHHHHHHhhcCC
Confidence 67889999999 34 578888888874 57899998 66666665432 1 1122222211110 01146
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+|+-.-. .....+....+.++++|.++...
T Consensus 249 ~D~vid~~g-----~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 249 FDFILDNVG-----GSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp BSEEEESSC-----TTHHHHGGGGBCSSSCCEEEESC
T ss_pred CCEEEECCC-----ChhhhhHHHHHhhcCCcEEEEeC
Confidence 999985432 22234567778899999987653
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=3.1 Score=32.62 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCC-hhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----
Q 025144 69 TGDNVLDVCCGSG-DLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 137 (257)
.++++|=.|++.| .+...+++.+ ..+.+|..++.++...+.+++..+.. .++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHH
Confidence 4668888887633 2333333322 13678999998876555444433322 46888999998742 0
Q ss_pred -CCCcccEEEecccccC-------cc-----c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 -SDCFFDAITMGYGLRN-------VV-----D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~~-------~~-----~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+..... +. + ...+++.+.+.++++|.++.+.
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 1246899998766542 11 1 1234566667777788887664
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.55 Score=38.84 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
++.+|+=+|+|. |..+..++..+ +++|+++|.++.-++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 467999999985 66677777764 6799999999988777765
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.26 Score=33.85 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=31.0
Q ss_pred CCCCCcccEEEeccccc-C-cccHHHHHHHHHhcccCCCEEEE
Q 025144 136 PFSDCFFDAITMGYGLR-N-VVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~-~-~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
.+++++||.|+....-. . ..=+..++..+.+.|||||.|..
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 46789999999654333 2 22248899999999999999964
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.16 Score=41.64 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=53.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
++.+|+=+|+|. |..+...+... +.+|+++|.+++.++.+.+... ..+.....+..++.-.-..+|+|+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g-------~~~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFG-------GRVITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTT-------TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcC-------ceEEEecCCHHHHHHHHhCCCEEEE
Confidence 357999999853 44445555553 5799999999987776654321 1222211111111000125799986
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.........+..+.+...+.+++||.++.+.
T Consensus 236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp CCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 5443211111112456677889999876543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=1.8 Score=35.94 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
..+|+=+|+| ..+..+++.+ ..+..|+++|.+++.++.+++ ..+.++.+|..+.. ..-...|+
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----------~g~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----------TTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----------CCCeEEEcCCCCHHHHHhcCCCccCE
Confidence 3478888875 4444444432 136799999999998887764 25678999998742 22356898
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|++...- +.....+....+.+.|+..+++..
T Consensus 72 viv~~~~---~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 72 LINAIDD---PQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp EEECCSS---HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEECCCC---hHHHHHHHHHHHHhCCCCeEEEEE
Confidence 8864321 122333445556667877776543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=89.83 E-value=1.7 Score=33.27 Aligned_cols=102 Identities=9% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC----------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---------- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---------- 137 (257)
.++++|=.|++ |.+...+++.+ ..+.+|..+|.+++.++...+.+ + .++.++..|+.+...
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G----PRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CcceEEEccCCCHHHHHHHHHHHHH
Confidence 45677877755 44555444433 23679999999988776665544 1 478899999987420
Q ss_pred CCCcccEEEecccccCcc--------c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+....... + ...+.+.+.+.++++|.++.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 014689999766543221 1 1224566667777788877654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.17 Score=41.58 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
++.+|+=+|+|. |..+...+..+ +.+|+++|.++.-++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 567999999985 66666667665 5799999999988777765
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=4.2 Score=31.10 Aligned_cols=107 Identities=9% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCC-hhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC---
Q 025144 69 TGDNVLDVCCGSG-DLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS--- 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 138 (257)
.++++|=.|++.+ .+...+++.+ ..+.+|+.++.+....+.+.+.....+. .++.++..|+.+.. +.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR---NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS---CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC---CCceEEeCCCCCHHHHHHHHHHHH
Confidence 3567888886521 1333333322 2367999999887666655554433321 37899999998753 00
Q ss_pred --CCcccEEEecccccC-------cc-----cH-----------HHHHHHHHhcccCCCEEEEEe
Q 025144 139 --DCFFDAITMGYGLRN-------VV-----DK-----------RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 --~~~~D~v~~~~~l~~-------~~-----~~-----------~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..|+++.+..... +. +. ..+++.+...++++|.++.+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 146899987665432 11 11 224566777788888887765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.63 E-value=4.5 Score=33.08 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.+||.++.+.|.++..++.. .++.+.=|--.....+.++...+.. ..++.+... ..+ ....||+|+..
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~-~~~~~~~~~-~~~---~~~~~~~v~~~ 107 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGID-ESSVKFLDS-TAD---YPQQPGVVLIK 107 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCC-GGGSEEEET-TSC---CCSSCSEEEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCC-ccceEeccc-ccc---cccCCCEEEEE
Confidence 4568999999999999888643 3344432444444444555433221 012444322 222 24679999874
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.. .........|..+...|++|+.+++..-+.
T Consensus 108 lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~ 139 (375)
T 4dcm_A 108 VP-KTLALLEQQLRALRKVVTSDTRIIAGAKAR 139 (375)
T ss_dssp CC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred cC-CCHHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence 33 334456778999999999999997776543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=2 Score=35.05 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=59.5
Q ss_pred CCCCeEEEecCC--CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CCCC
Q 025144 68 KTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDC 140 (257)
Q Consensus 68 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 140 (257)
.++.+||=+|++ .|..+..+++.. +.+++++. +++-++.+++. .--.++...-.++. ..++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~v~~~t~g 230 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKSR---------GAEEVFDYRAPNLAQTIRTYTKN 230 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHHT---------TCSEEEETTSTTHHHHHHHHTTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHHc---------CCcEEEECCCchHHHHHHHHccC
Confidence 678899999983 688888998885 67888885 77777766543 11223332222210 1134
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcc-cCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~~~~ 178 (257)
.+|+|+-.-. -...+....+.| +++|.++...
T Consensus 231 ~~d~v~d~~g------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 231 NLRYALDCIT------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCCEEEESSC------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred CccEEEECCC------chHHHHHHHHHhhcCCCEEEEEe
Confidence 5999984322 234567777788 6999987654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.25 E-value=4.4 Score=31.33 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCC------------hhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS------------KNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.++++|=-|++. .+...+++.+ ..+.+|+.+|.+ .+.++.+...+...+ .++.++..|+.+.
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEVDVRDR 83 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEECCTTCH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEccCCCH
Confidence 356777777654 4444444433 236799999987 555555544443322 5789999999874
Q ss_pred C-----C-----CCCcccEEEecccccCc------cc-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 136 P-----F-----SDCFFDAITMGYGLRNV------VD-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~-----~-----~~~~~D~v~~~~~l~~~------~~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. + ..+..|+++.+...... ++ ...+++.+.+.++++|.++.+.
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 2 0 01468999977654321 11 1234566777777888876653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.21 E-value=3.2 Score=32.97 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=53.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 137 (257)
.+++||=.|++ |.++..+++.+ ..+.+|++++.+++.++.+.+.+...+.. .++.++..|+.+.. +
T Consensus 7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSG--PEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 35578877765 44555444443 23679999999998887776665443311 37889999998742 0
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 84 ~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 84 RFGPVSILCNNAGVN 98 (319)
T ss_dssp HTCCEEEEEECCCCC
T ss_pred hCCCCCEEEECCCcC
Confidence 014689999876643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.98 E-value=6.5 Score=30.23 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=51.0
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
.+||=.| + |..+..+++.+ ..+.+|++++.++........ .++.++.+|+.++. -..+|+|+...
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLIST 71 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEECC
Confidence 4799999 4 88888888765 235699999988765443321 47889999998866 45689999766
Q ss_pred cccCc
Q 025144 150 GLRNV 154 (257)
Q Consensus 150 ~l~~~ 154 (257)
.....
T Consensus 72 ~~~~~ 76 (286)
T 3ius_A 72 APDSG 76 (286)
T ss_dssp CCBTT
T ss_pred Ccccc
Confidence 54433
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=2.5 Score=29.48 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=50.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcc
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 142 (257)
.++.+|+=+|+|. |......+.. .+.+|+++|.+++.++.++.. ....++.+|..+.. ..-..+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~---------~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNSE---------FSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCTT---------CCSEEEESCTTSHHHHHTTTGGGC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHhc---------CCCcEEEecCCCHHHHHHcCcccC
Confidence 4567999998764 4333333333 356999999988654433211 23456666654321 112458
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
|+|+..-.- +.....+..+.+.+.+...++.
T Consensus 86 d~Vi~~~~~---~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 86 DMVFAFTND---DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp SEEEECSSC---HHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEEeCC---cHHHHHHHHHHHHHCCCCeEEE
Confidence 988864321 1222333334444445445543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.23 E-value=6.9 Score=30.46 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=52.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~----~----- 137 (257)
.+++||=.|++ |.++..+++.+ ..+.+|++++.+.+..+.+.+.+...+. .++.++..|+.+. . +
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH---ENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC---CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEccCCCcHHHHHHHHHHHH
Confidence 35567766654 55555555443 2367999999998877766666543321 4789999999885 2 0
Q ss_pred -CCCcccEEEeccccc
Q 025144 138 -SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 87 ~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 87 THFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHSSCCEEEECCCCC
T ss_pred HhCCCCCEEEECCccc
Confidence 014689999877654
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=88.11 E-value=5.7 Score=30.35 Aligned_cols=77 Identities=5% Similarity=-0.072 Sum_probs=52.0
Q ss_pred CCCeEEEecCC----CCh-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------
Q 025144 69 TGDNVLDVCCG----SGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G----~G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------- 136 (257)
.++++|=-|++ -|. .+..|++. +++|..+|.+++.++.+.+.++..+. .++.+++.|+.+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~---Ga~Vvi~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL---GAKLVFTYRKERSRKELEKLLEQLNQ---PEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHGGGTC---SSCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC---CcEEEEEccCCCHHHHHHHHH
Confidence 46688888853 333 23344443 78999999999888887777655432 47888999998742
Q ss_pred ---CCCCcccEEEecccc
Q 025144 137 ---FSDCFFDAITMGYGL 151 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l 151 (257)
-.-+..|+++.+..+
T Consensus 79 ~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp HHHHHHCCCSEEEECCCC
T ss_pred HHHHHhCCCCEEEecccc
Confidence 012678999876553
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=3.8 Score=32.58 Aligned_cols=89 Identities=22% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CCCCCCcccEEE
Q 025144 70 GDNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~ 146 (257)
..+|.=||+|. |. ++..+.+. +...+|+++|.+++.++.+.+. .-+.....|..+ . -...|+|+
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~~---------G~~~~~~~~~~~~~---~~~aDvVi 99 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKVE---DFSPDFVM 99 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCTTGGG---GGCCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHC---------CCcchhcCCHHHHh---hccCCEEE
Confidence 35899998774 33 33344333 2222899999999887776543 111112233332 1 13479998
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
..-... ....+++++...++++..+
T Consensus 100 lavp~~---~~~~vl~~l~~~l~~~~iv 124 (314)
T 3ggo_A 100 LSSPVR---TFREIAKKLSYILSEDATV 124 (314)
T ss_dssp ECSCGG---GHHHHHHHHHHHSCTTCEE
T ss_pred EeCCHH---HHHHHHHHHhhccCCCcEE
Confidence 754433 3466788888888888654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=87.70 E-value=5.4 Score=31.09 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=62.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhH-HHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 137 (257)
.++++|=.|++ |.+...+++.+ ..+.+|+.++.+.+. .+...+..+..+ .++.++.+|+.+.. +
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHHH
Confidence 35678877765 44555544433 236789999987653 333333333222 57889999998742 0
Q ss_pred -CCCcccEEEecccccC----cc-----c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 -SDCFFDAITMGYGLRN----VV-----D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~~----~~-----~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+..... +. + ...+++.+.+.++++|.++.+.
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 0146899997654321 11 1 1234666777788888876653
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=87.39 E-value=0.58 Score=36.45 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=57.5
Q ss_pred CCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE-EccCCCCCCCCCcccEEEeccc----cc
Q 025144 78 CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-EGDALDLPFSDCFFDAITMGYG----LR 152 (257)
Q Consensus 78 ~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~D~v~~~~~----l~ 152 (257)
++.|.....+.+. ++..+..+|..- ..-.+++....+ .+...+. ++|+..... .+.+|+|++... -|
T Consensus 150 ~~~~~~~~~~~k~--~g~~vl~v~~~~---~~p~k~v~wi~P--i~GAt~~~~lDfg~p~~-~~k~DvV~SDMApn~sGh 221 (320)
T 2hwk_A 150 HPQSDFSSFVSKL--KGRTVLVVGEKL---SVPGKMVDWLSD--RPEATFRARLDLGIPGD-VPKYDIIFVNVRTPYKYH 221 (320)
T ss_dssp CCCCCCHHHHHTS--SCSEEEEEESCC---CCTTSEEEEEES--STTCSEECCGGGCSCTT-SCCEEEEEEECCCCCCSC
T ss_pred cCCCCHHHHHhhC--CCcEEEEEeccc---ccCCceeEeecc--CCCceeecccccCCccc-cCcCCEEEEcCCCCCCCc
Confidence 4556666666554 577888886321 112222222221 1344555 777776443 267999998544 23
Q ss_pred Ccc---c----HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 153 NVV---D----KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 153 ~~~---~----~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+.. | ..-+++....+|+|||.+++-.+...+
T Consensus 222 ~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaD 259 (320)
T 2hwk_A 222 HYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYAD 259 (320)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCS
T ss_pred cccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 311 2 122577788899999999998877654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.27 E-value=5.6 Score=27.50 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=55.4
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCCh-hHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCccc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK-NQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFD 143 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 143 (257)
..+|+=+|+ |..+..+++.+ ..+.+|+++|.++ +..+....... ..+.++.+|..+.. ..-+..|
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-------DNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-------TTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-------CCCeEEEcCCCCHHHHHHcChhhCC
Confidence 346887876 56666655543 1357899999974 44434333221 35788999987632 1124689
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|++.-.- +.....+....+.+.|...++..
T Consensus 74 ~vi~~~~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 74 AILALSDN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp EEEECSSC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEEEecCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 88874321 12233444555566666666543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=87.19 E-value=1.2 Score=37.75 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=47.6
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
+|+=+|| |..+..+++.+. .+.+|+.+|.+++.++.+.+.+ .+.++.+|..+.. ..-+..|+++
T Consensus 5 ~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~---------~~~~i~Gd~~~~~~L~~Agi~~ad~~i 73 (461)
T 4g65_A 5 KIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY---------DLRVVNGHASHPDVLHEAGAQDADMLV 73 (461)
T ss_dssp EEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS---------SCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc---------CcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence 5666655 567777777663 3578999999999988877663 6788999998753 1235689887
Q ss_pred e
Q 025144 147 M 147 (257)
Q Consensus 147 ~ 147 (257)
+
T Consensus 74 a 74 (461)
T 4g65_A 74 A 74 (461)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.46 Score=39.14 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=32.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
++.+|+=+|+|. |..+..+++.+ +.+|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 578999999985 66666777765 5689999999877766654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.85 E-value=4.6 Score=31.06 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++++|=-|++. .+...+++.+ ..+++|...|.+++.++.+.+.+...+ .++..+..|+.+.. -
T Consensus 8 ~gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 8 TGKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG----YDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 355666666554 4444444433 246899999999988887777665543 57888999998742 1
Q ss_pred CCCcccEEEecccccC
Q 025144 138 SDCFFDAITMGYGLRN 153 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~ 153 (257)
.-+..|+++.+.....
T Consensus 83 ~~G~iDiLVNNAG~~~ 98 (255)
T 4g81_D 83 EGIHVDILINNAGIQY 98 (255)
T ss_dssp TTCCCCEEEECCCCCC
T ss_pred HCCCCcEEEECCCCCC
Confidence 2367999998766443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.67 E-value=1.8 Score=33.23 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=63.8
Q ss_pred CCeEEEecCCCChhHHHHHHHh-C-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-G-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 138 (257)
+.+||=.| |+|.++..+++.+ . .+.+|++++.+++..+...+.+...+ .++.++.+|+.+.. +.
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHHHHHHHHHH
Confidence 45677555 6677777766654 2 36799999998876666555543322 47889999998742 00
Q ss_pred -CCcccEEEecccccCc--------cc-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 -DCFFDAITMGYGLRNV--------VD-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..|+++.+...... .+ ...+++.+.+.++++|.++.+.
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 1368999876543321 11 1234556666666677776653
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.64 E-value=5.6 Score=30.57 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeC-ChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDF-SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 137 (257)
.++++|=.|++ |.+...+++.+ ..+.+|..++. +.+..+...+.+...+ .++.++..|+.+.. +
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 35577777754 44555444433 23678888775 3444555544444332 57889999998742 0
Q ss_pred -CCCcccEEEecccccCcc--------c-----------HHHHHHHHHhcccCCCEEEEEee
Q 025144 138 -SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+..|+++.+....... + ...+.+.+.+.++++|.++.+..
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 014689999766543221 1 12345667777888888877643
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.52 E-value=3.8 Score=30.42 Aligned_cols=91 Identities=8% Similarity=-0.006 Sum_probs=54.3
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
+|+=+|+ |..+..+++.+ ..+.+|+++|.+++.++...+. .+..++.+|..+.. ..-..+|+|+
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi 70 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---------LKATIIHGDGSHKEILRDAEVSKNDVVV 70 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---------SSSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---------cCCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence 4666765 56666665543 2367999999999877765433 35678999987632 1124689988
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+...- +.....+....+.+.+...++.
T Consensus 71 ~~~~~---d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 71 ILTPR---DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp ECCSC---HHHHHHHHHHHHHTSCCCEEEE
T ss_pred EecCC---cHHHHHHHHHHHHHcCCCeEEE
Confidence 64321 1123334444454555555543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.50 E-value=3.3 Score=32.21 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=64.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++.+|=-|++.| +...+++.+ ..+++|..+|.+++.++.+.+.+ + .+...+.+|+.+.. -
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G----GGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C----TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C----CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 4666777776554 444443332 23789999999998877665544 2 46788899998742 0
Q ss_pred CCCcccEEEecccccCc------c--c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNV------V--D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~------~--~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-+..|+++.+...... + + .-.+.+.+.+.++.+|.++.+.
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 12578999976654322 1 1 1233566777788888876654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=5.1 Score=31.35 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC---
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS--- 138 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 138 (257)
.++++|=.|++. ..+...+++.+ ..+.+|..+|.+++..+.+.+..... .++.++.+|+.+.. +.
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHH
Confidence 356788888753 23433333332 23679999999876655555444332 35788999998742 00
Q ss_pred --CCcccEEEecccccCc-------c-----c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 --DCFFDAITMGYGLRNV-------V-----D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 --~~~~D~v~~~~~l~~~-------~-----~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..|+++.+...... . + ...+++.+.+.++++|.++.+.
T Consensus 104 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 104 EEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 1468999987665321 1 1 1234566677777788887764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=85.81 E-value=0.36 Score=40.06 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=32.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
++.+|+=+|+|. |..+..++..+ +.+|+++|.++..++.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence 467999999985 66666777665 568999999998777664
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.58 E-value=5.5 Score=30.46 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=49.6
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC-----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS----- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 138 (257)
++++|=.|+ +|.+...+++.+ ..+.+|++++.+++..+...+.+...... .++.++.+|+.+.. +.
T Consensus 7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 7 GKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEP--QKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCG--GGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 457777775 555555555443 23679999999887665544443221101 36788999988742 00
Q ss_pred CCcccEEEecccccCc
Q 025144 139 DCFFDAITMGYGLRNV 154 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~ 154 (257)
.+..|+++.+......
T Consensus 84 ~g~id~lv~~Ag~~~~ 99 (267)
T 2gdz_A 84 FGRLDILVNNAGVNNE 99 (267)
T ss_dssp HSCCCEEEECCCCCCS
T ss_pred cCCCCEEEECCCCCCh
Confidence 1357999987765433
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=85.58 E-value=5.5 Score=30.78 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---------S 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~ 138 (257)
.++++|=.|+ +|.+...+++.+ ..+.+|+.+|.+++.++.+.+.+...+ .++.++..|+.+... .
T Consensus 32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 32 RGRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG----GTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT----CCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEecCCCHHHHHHHHHHHHH
Confidence 3556776665 455555554443 236799999998877776666554332 578899999987530 0
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
.+..|+++.+...
T Consensus 107 ~g~iD~lvnnAg~ 119 (275)
T 4imr_A 107 IAPVDILVINASA 119 (275)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCCEEEECCCC
Confidence 1468999987664
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.48 E-value=8.2 Score=29.70 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=62.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCC-hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS-KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 137 (257)
.++++|=.|++. .+...+++.+ ..+.+|..++.+ .+..+...+.+...+ .++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (271)
T 3v2g_A 30 AGKTAFVTGGSR-GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG----GRAVAIRADNRDAEAIEQAIRETV 104 (271)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHHH
Confidence 456788777654 4444444433 236788888654 344444444443322 57889999998742 0
Q ss_pred -CCCcccEEEecccccCcc--------c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 -SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+....... + ...+++.+.+.++++|.++.+.
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 014689999776543221 1 1234666777778888887664
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.40 E-value=2.9 Score=32.05 Aligned_cols=105 Identities=9% Similarity=0.064 Sum_probs=62.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEE-eCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGL-DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 137 (257)
.++++|=.|++. .+...+++.+ ..+.+|..+ +.+++..+...+.+...+ .++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 7 TNRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG----RSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT----SCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHH
Confidence 356778777654 4444444433 236788888 666666665555544332 57889999998742 0
Q ss_pred -CCCcccEEEeccccc-C---ccc----------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 -SDCFFDAITMGYGLR-N---VVD----------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 -~~~~~D~v~~~~~l~-~---~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+.... . +.+ ...+.+.+.+.++++|.++.+.
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 014689999766432 1 111 1234556666777778776654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=85.36 E-value=7.2 Score=28.64 Aligned_cols=95 Identities=7% Similarity=-0.014 Sum_probs=58.0
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEecc
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~ 149 (257)
+||=.| |+|.....+++.+ ..+.+|++++.++..+.... . .++.++.+|+.+... .-+.+|+|+.+.
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~------~----~~~~~~~~D~~d~~~~~~~~~d~vi~~a 70 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL------G----ATVATLVKEPLVLTEADLDSVDAVVDAL 70 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT------C----TTSEEEECCGGGCCHHHHTTCSEEEECC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEeccccccccc------C----CCceEEecccccccHhhcccCCEEEECC
Confidence 466666 5677777766654 23679999998876544221 1 478899999987531 113589999766
Q ss_pred cccCc----ccHHHHHHHHHhcccC-CCEEEEE
Q 025144 150 GLRNV----VDKRKALEESFRVLKP-GSRISVL 177 (257)
Q Consensus 150 ~l~~~----~~~~~~l~~~~~~Lk~-gG~l~~~ 177 (257)
...+. ........++.+.++. |+.+++.
T Consensus 71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 55321 1123345566666654 4566555
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=3.2 Score=35.38 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..++.+|+=+|+|. |......++.+ +.+|+++|.++...+.+.+. ...+ .+..+. . ...|+|
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~-l--~~aDvV 333 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMME----------GFDV--VTVEEA-I--GDADIV 333 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH-G--GGCSEE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH-H--hCCCEE
Confidence 46788999999874 65555666654 57999999999876665432 1221 122121 1 357999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+..-.-.++-+ ....+.+|+||.++....
T Consensus 334 i~atgt~~~i~-----~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 334 VTATGNKDIIM-----LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp EECSSSSCSBC-----HHHHHHSCTTCEEEECSS
T ss_pred EECCCCHHHHH-----HHHHHhcCCCcEEEEeCC
Confidence 87533222111 245566899998865543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.03 E-value=6.7 Score=26.26 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=51.1
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+|+ |..+..+++.+ ..+.+++++|.+++.++..++. ..+.++.+|..+.. ..-..+|+|
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~v 73 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMY 73 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCEE
Confidence 47888877 55555444433 1357899999988766655432 24556667765421 112458998
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+..-.-. .....+..+.+.+.++ .+++
T Consensus 74 i~~~~~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 74 IAVTGKE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp EECCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred EEeeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence 8753211 2223344455556665 4443
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.02 E-value=5.9 Score=30.93 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=62.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCCh--hHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C---
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK--NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F--- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 137 (257)
.++++|=.|++ |.+...+++.+ ..+.+|..++.+. ...+...+.....+ .++.++.+|+.+.. +
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHH
Confidence 35677877754 45555554433 2367899998763 33444444333322 57888899988742 0
Q ss_pred --CCCcccEEEecccccC----ccc----------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 --SDCFFDAITMGYGLRN----VVD----------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 --~~~~~D~v~~~~~l~~----~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+..... +.+ ...+++.+.+.++++|.++.+.
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 0146899997766432 111 1234666777788888887754
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=84.83 E-value=9.3 Score=30.75 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=54.2
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEE-EeCChh---HHHHHHhhhhhhhhccCCCeeEEEc------c
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIG-LDFSKN---QLSMASSRQDLVSKACYKNIEWVEG------D 131 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~-~D~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~------d 131 (257)
..+..++.+||-+|+ |.|..+..+++.. +.++++ ++.++. ..+.+++. + --.++.. +
T Consensus 162 ~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~ 230 (357)
T 1zsy_A 162 FEQLQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQKLSDRLKSL----G-----AEHVITEEELRRPE 230 (357)
T ss_dssp SSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHHHHHHHHHHT----T-----CSEEEEHHHHHSGG
T ss_pred HhccCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchHHHHHHHHhc----C-----CcEEEecCcchHHH
Confidence 346788999999997 3588888898886 455554 444432 23334321 1 1112221 1
Q ss_pred CCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 132 ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 132 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.+..-..+.+|+|+-.-. ... .....+.|+++|.++...
T Consensus 231 ~~~~~~~~~~~Dvvid~~g------~~~-~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 231 MKNFFKDMPQPRLALNCVG------GKS-STELLRQLARGGTMVTYG 270 (357)
T ss_dssp GGGTTSSSCCCSEEEESSC------HHH-HHHHHTTSCTTCEEEECC
T ss_pred HHHHHhCCCCceEEEECCC------cHH-HHHHHHhhCCCCEEEEEe
Confidence 1111111124899874322 122 245778999999987753
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=84.37 E-value=2.4 Score=39.42 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC------------CC--
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL------------DL-- 135 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~------------~~-- 135 (257)
..+++|+-||.|.++.-+.+. +-...+.++|+++.+.+.-+.+. ++..++..|+. +.
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~--------p~~~~~~~DI~~l~~~~~~~di~~~~~ 610 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNN--------PGSTVFTEDCNILLKLVMAGETTNSRG 610 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHC--------TTSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC--------CCCccccccHHHHhhhccchhhhhhhh
Confidence 348999999999999988765 21125789999999888776665 45555655532 11
Q ss_pred -CCC-CCcccEEEecccccCc
Q 025144 136 -PFS-DCFFDAITMGYGLRNV 154 (257)
Q Consensus 136 -~~~-~~~~D~v~~~~~l~~~ 154 (257)
.++ .+.+|+|+.......+
T Consensus 611 ~~lp~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 611 QRLPQKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp CBCCCTTTCSEEEECCCCTTC
T ss_pred hhcccCCCeeEEEEcCCCcch
Confidence 121 3569999976665544
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.37 E-value=8.3 Score=29.36 Aligned_cols=106 Identities=8% Similarity=0.029 Sum_probs=64.5
Q ss_pred CCCCeEEEecCC-CChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C---
Q 025144 68 KTGDNVLDVCCG-SGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F--- 137 (257)
Q Consensus 68 ~~~~~vLdiG~G-~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 137 (257)
..+++||=.|++ +|.+...+++.+ ..+.+|..++.+....+.+++..... .++.++.+|+.+.. +
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHHHH
Confidence 456788988864 245555554443 23679999998866555544443322 46889999998742 0
Q ss_pred --CCCcccEEEecccccC-----------cc--c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 --SDCFFDAITMGYGLRN-----------VV--D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 --~~~~~D~v~~~~~l~~-----------~~--~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+..... .+ + ...+++.+.+.++++|.++.+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 1246899997765432 11 1 1234556666777788876654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.18 E-value=12 Score=28.65 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC-----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS----- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 138 (257)
++++|=.| |+|.+...+++.+ ..+.+|++++.++..++...+.+...+.. .++.++.+|+.+.. +.
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCC--ceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 45677776 4566666555543 23679999999887766655544332211 35778899988742 00
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
.+.+|+++.+...
T Consensus 109 ~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 109 HSGVDICINNAGL 121 (279)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 1368999976654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=12 Score=28.51 Aligned_cols=79 Identities=9% Similarity=-0.002 Sum_probs=45.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 136 (257)
.++++|=.|++. |.+...+++.+ ..+.+|+.++.++...+.+++ +.... .+..++.+|+.+..
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~----~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL----GSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHH-HHHHT----TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHH-HHHhc----CCcEEEEccCCCHHHHHHHHHHHH
Confidence 356788888652 55555555543 236789999987622222221 21111 23478888988742
Q ss_pred CCCCcccEEEeccccc
Q 025144 137 FSDCFFDAITMGYGLR 152 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~ 152 (257)
-..+..|+++.+....
T Consensus 83 ~~~g~iD~lv~~Ag~~ 98 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFA 98 (265)
T ss_dssp TTCSSEEEEEECCCCC
T ss_pred HHcCCCCEEEECCCCC
Confidence 1124689999876543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=83.61 E-value=2.8 Score=33.73 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=55.3
Q ss_pred CeEEEe-cCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------CCCCcc
Q 025144 71 DNVLDV-CCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCFF 142 (257)
Q Consensus 71 ~~vLdi-G~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 142 (257)
.+||=. |+| .|..+..+++.. +++|+++|.+++-++.+++. + --.++..+-.++. .....+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~~----G-----a~~~~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKDI----G-----AAHVLNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHHH----T-----CSEEEETTSTTHHHHHHHHHHHHCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C-----CCEEEECCcHHHHHHHHHHhcCCCC
Confidence 466654 333 467777778775 57999999999888877643 1 1123322222210 011359
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+|+-... ...+....+.|+++|.+++..
T Consensus 235 D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 235 RIFLDAVT-------GPLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp CEEEESSC-------HHHHHHHHHHSCTTCEEEECC
T ss_pred cEEEECCC-------ChhHHHHHhhhcCCCEEEEEe
Confidence 99985432 123467788999999998764
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.11 E-value=2.1 Score=34.48 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=55.2
Q ss_pred hhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
+..+..++.+||=.|+ | .|..+..+++.. ....|++++ +++-.+.++ . + --.++. +-.++
T Consensus 136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~-g~~~V~~~~-~~~~~~~~~--~---g-----a~~~~~-~~~~~~~~~~ 202 (349)
T 4a27_A 136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTV-PNVTVFGTA-STFKHEAIK--D---S-----VTHLFD-RNADYVQEVK 202 (349)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHTTS-TTCEEEEEE-CGGGHHHHG--G---G-----SSEEEE-TTSCHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCcEEEEeC-CHHHHHHHH--c---C-----CcEEEc-CCccHHHHHH
Confidence 4456788999999998 3 467777777653 246888888 555445443 1 1 112222 21111
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+.+|+|+-.-.- ..+....+.|+++|.+++...
T Consensus 203 ~~~~~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 203 RISAEGVDIVLDCLCG-------DNTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp HHCTTCEEEEEEECC--------------CTTEEEEEEEEEEC-
T ss_pred HhcCCCceEEEECCCc-------hhHHHHHHHhhcCCEEEEECC
Confidence 0123579999853321 123567889999999987643
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=4.7 Score=32.20 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=54.7
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCCh----hHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CCCC
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK----NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDC 140 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~----~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 140 (257)
.+||=.| |+|..+..+++.+ ..+.+|++++-++ ........ +. . .++.++.+|+.+.. +...
T Consensus 11 ~~IlVtG-atG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~-l~--~----~~v~~~~~Dl~d~~~l~~~~~~~ 82 (346)
T 3i6i_A 11 GRVLIAG-ATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKA-LE--D----KGAIIVYGLINEQEAMEKILKEH 82 (346)
T ss_dssp CCEEEEC-TTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHH-HH--H----TTCEEEECCTTCHHHHHHHHHHT
T ss_pred CeEEEEC-CCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHH-HH--h----CCcEEEEeecCCHHHHHHHHhhC
Confidence 4788777 5777777776654 2357899998765 22222211 11 1 58899999998742 2112
Q ss_pred cccEEEecccccCcccHHHHHHHHHh
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFR 166 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~ 166 (257)
.+|+|+......+......+++.+.+
T Consensus 83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~ 108 (346)
T 3i6i_A 83 EIDIVVSTVGGESILDQIALVKAMKA 108 (346)
T ss_dssp TCCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred CCCEEEECCchhhHHHHHHHHHHHHH
Confidence 68999987766555555555555544
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=82.63 E-value=1.1 Score=41.40 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=69.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v 145 (257)
...+..+||+|.|.-.-...|. ++...|+.+|.-|.. +....+. ..-.+++.|...... ....+|.|
T Consensus 819 ~~~~~~~lDlGTGPE~RiLsLi---P~~~pvtm~D~RP~a-----e~~~~w~----~~T~f~~~DyL~~~~~~~~~~D~v 886 (1289)
T 1ej6_A 819 VYDGDVVLDLGTGPEAKILELI---PATSPVTCVDIRPTA-----QPSGCWN----VRTTFLELDYLSDGWITGVRGDIV 886 (1289)
T ss_dssp CCTTCCEEEESCCSSCGGGGTS---CTTSCEEEEESSCCC-----SCSTTBS----SCEEEEESCTTSSSCGGGCCCSEE
T ss_pred ecccceEEEccCCCcceeeeec---CCCCceEEecccCch-----hhhcccc----ccceeeEccccccceeecCCCcEE
Confidence 3456799999999865444443 667899999986632 1111111 568899999987542 23469999
Q ss_pred EecccccCc-----ccHHHHHHHHHhcccCCC-EEEEEeecC
Q 025144 146 TMGYGLRNV-----VDKRKALEESFRVLKPGS-RISVLDFNK 181 (257)
Q Consensus 146 ~~~~~l~~~-----~~~~~~l~~~~~~Lk~gG-~l~~~~~~~ 181 (257)
.|.++|... -+....++++.+.+++.| .-++...+.
T Consensus 887 t~i~SLGAA~A~a~~tl~~~~~q~l~~~~~~~~~~l~lQlNc 928 (1289)
T 1ej6_A 887 TCMLSLGAAAAGKSMTFDAAFQQLIKVLSKSTANVVLVQVNC 928 (1289)
T ss_dssp EECSCHHHHHHHHTCCHHHHHHHHHHHHHTSCCSEEEEECCC
T ss_pred EEEeechhhhhccCCcHHHHHHHHHHHHHhcCccEEEEEecC
Confidence 999887755 257788888888887755 344444443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=3 Score=32.49 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=53.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----c-----------cCCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A-----------CYKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~-----------~~~~~~~~~~d~~~ 134 (257)
.+|.=||+|. |......+.. .+.+|+++|.+++.++.+.+.+..... . ...++.. ..|..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence 4788888875 4333222223 367999999999998887765321100 0 0001222 223222
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
. -...|+|+..-. ...+....+++++...++++..+
T Consensus 82 ~---~~~aDlVi~av~-~~~~~~~~v~~~l~~~~~~~~il 117 (283)
T 4e12_A 82 A---VKDADLVIEAVP-ESLDLKRDIYTKLGELAPAKTIF 117 (283)
T ss_dssp H---TTTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEE
T ss_pred H---hccCCEEEEecc-CcHHHHHHHHHHHHhhCCCCcEE
Confidence 1 134799886432 22223456778888888887755
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.42 E-value=9.7 Score=29.87 Aligned_cols=89 Identities=12% Similarity=-0.039 Sum_probs=51.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 145 (257)
-.+.+|+=+|+|. |......+..+ +.+|+++|.+++..+.+.+. ...... .+..+. -...|+|
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~l~~~---l~~aDvV 219 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEM----------GLVPFHTDELKEH---VKDIDIC 219 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----------TCEEEEGGGHHHH---STTCSEE
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC----------CCeEEchhhHHHH---hhCCCEE
Confidence 4577999999864 44444444443 56999999988654433221 122221 222221 1358999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+..-..+.+.. ...+.+|||+.++-.
T Consensus 220 i~~~p~~~i~~------~~~~~mk~g~~lin~ 245 (300)
T 2rir_A 220 INTIPSMILNQ------TVLSSMTPKTLILDL 245 (300)
T ss_dssp EECCSSCCBCH------HHHTTSCTTCEEEEC
T ss_pred EECCChhhhCH------HHHHhCCCCCEEEEE
Confidence 98776654432 234678998876443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=82.36 E-value=10 Score=29.30 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 137 (257)
.++++|=.|++. .+...+++.+ ..+.+|+.+|.+++.++.+.+.+ + .++.++..|+.+.. +
T Consensus 28 ~gk~vlVTGas~-gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 28 AGKVAIVTGAGA-GIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G----CGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp TTCEEEETTTTS-THHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C----SSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----CcceEEEecCCCHHHHHHHHHHHHH
Confidence 355677777554 4444444432 23679999999987776655544 1 57889999998742 0
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 100 ~~g~iD~lvnnAg~~ 114 (277)
T 3gvc_A 100 AFGGVDKLVANAGVV 114 (277)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 014689999776653
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.25 E-value=9.4 Score=29.37 Aligned_cols=84 Identities=19% Similarity=0.061 Sum_probs=47.9
Q ss_pred eEEEecCCC-Chh-HHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|.=||+|. |.. +..+.+ .+.+|+++|.+++.++.+.+. + .... ...|..+. ...|+|+..-
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~~~~~~~~~~~~~----g----~~~~-~~~~~~~~----~~~D~vi~av 65 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVER----Q----LVDE-AGQDLSLL----QTAKIIFLCT 65 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHT----T----SCSE-EESCGGGG----TTCSEEEECS
T ss_pred EEEEEcCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHhC----C----CCcc-ccCCHHHh----CCCCEEEEEC
Confidence 577788764 332 223332 246899999998877665432 1 0111 12233222 3579998754
Q ss_pred cccCcccHHHHHHHHHhcccCCCEE
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
.-. ....+++.+...++++..+
T Consensus 66 ~~~---~~~~~~~~l~~~~~~~~~v 87 (279)
T 2f1k_A 66 PIQ---LILPTLEKLIPHLSPTAIV 87 (279)
T ss_dssp CHH---HHHHHHHHHGGGSCTTCEE
T ss_pred CHH---HHHHHHHHHHhhCCCCCEE
Confidence 322 3456777888888887654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=81.99 E-value=9.8 Score=29.50 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=50.7
Q ss_pred CeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 71 DNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 71 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+|.=||+|. |. ++..+.+. +.+.+|+++|.+++.++.+.+. + .......|..+. -...|+|+..
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~~----g-----~~~~~~~~~~~~---~~~aDvVila 73 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRD-HPHYKIVGYNRSDRSRDIALER----G-----IVDEATADFKVF---AALADVIILA 73 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSSHHHHHHHHHT----T-----SCSEEESCTTTT---GGGCSEEEEC
T ss_pred ceEEEEeeCHHHHHHHHHHHhC-CCCcEEEEEcCCHHHHHHHHHc----C-----CcccccCCHHHh---hcCCCEEEEc
Confidence 4788898775 33 33334433 3356899999998877665432 1 111122233222 1357999875
Q ss_pred ccccCcccHHHHHHHHHhc-ccCCCEEE
Q 025144 149 YGLRNVVDKRKALEESFRV-LKPGSRIS 175 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~-Lk~gG~l~ 175 (257)
-... ....++..+... ++++..++
T Consensus 74 vp~~---~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 74 VPIK---KTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp SCHH---HHHHHHHHHHTSCCCTTCEEE
T ss_pred CCHH---HHHHHHHHHHhcCCCCCCEEE
Confidence 4322 235667777777 87765443
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=81.69 E-value=9.9 Score=29.07 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=50.2
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------CCCCcc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCFF 142 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 142 (257)
++++|=.|+ +|.+...+++.+ ..+.+|..+|.+++.++...+.+...... ..+..+..|+.+.. -.-+..
T Consensus 10 ~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 10 GKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPD--AILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTT--CEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCC--ceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 456776665 455555554443 23679999999988777666655433211 35778888887632 012468
Q ss_pred cEEEeccccc
Q 025144 143 DAITMGYGLR 152 (257)
Q Consensus 143 D~v~~~~~l~ 152 (257)
|+++.+....
T Consensus 87 d~lv~nAg~~ 96 (267)
T 3t4x_A 87 DILINNLGIF 96 (267)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999766543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=81.68 E-value=10 Score=28.92 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=61.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChh---HHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C--
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN---QLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 137 (257)
.++++|=.|+ +|.+...+++.+ ..+.+|..++.+.. .++...+.+...+ .++.++..|+.+.. +
T Consensus 10 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~ 84 (262)
T 3ksu_A 10 KNKVIVIAGG-IKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAKLFDF 84 (262)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHH
Confidence 3557776665 455666666654 34678998876543 3333333333222 57889999998742 0
Q ss_pred ---CCCcccEEEecccccCcc--------c-----------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 ---SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ---~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+....... + ...+++.+.+.++++|.++.+.
T Consensus 85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 014689999776543221 1 1223555666666778876653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=81.64 E-value=3.6 Score=33.72 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=64.6
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+.+++.+... +.+||.++.+-|.++..+. +..+++.+.-|.......+.+ + -.... ... .
T Consensus 33 ~~~~~l~~~~~~~-~~~~l~~n~~~g~~~~~~~----~~~~~~~~~~~~~~~~~l~~~----~----~~~~~-~~~---~ 95 (381)
T 3dmg_A 33 PVHDLLQKTVEPF-GERALDLNPGVGWGSLPLE----GRMAVERLETSRAAFRCLTAS----G----LQARL-ALP---W 95 (381)
T ss_dssp HHHHHHHTTCCCC-SSEEEESSCTTSTTTGGGB----TTBEEEEEECBHHHHHHHHHT----T----CCCEE-CCG---G
T ss_pred hHHHHHHHHHHHh-CCcEEEecCCCCccccccC----CCCceEEEeCcHHHHHHHHHc----C----CCccc-cCC---c
Confidence 3445555555443 3689999999998776664 346778776555444432221 1 11211 111 1
Q ss_pred CCCCCcccEEEeccccc-CcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 PFSDCFFDAITMGYGLR-NVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~-~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..++..||+|++...=+ ........|.++.+.|+|||.+++..-.
T Consensus 96 ~~~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~ 141 (381)
T 3dmg_A 96 EAAAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDK 141 (381)
T ss_dssp GSCTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCCcCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEcc
Confidence 22356799998744311 1123467788999999999999876644
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=81.31 E-value=15 Score=28.79 Aligned_cols=81 Identities=20% Similarity=0.062 Sum_probs=50.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE-EccCCCCC-CC--CCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-EGDALDLP-FS--DCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~-~~--~~~~ 142 (257)
..+.+||=.| |+|.++..+++.+ ..+.+|++++.++...+.....+..... .++.++ .+|+.+.. +. -..+
T Consensus 9 ~~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 9 PEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP---GRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp CTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST---TTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCC---CceEEEEecCCcChHHHHHHHcCC
Confidence 3456788776 5777777776654 2357999999887655544433321110 367777 78887643 11 1358
Q ss_pred cEEEeccccc
Q 025144 143 DAITMGYGLR 152 (257)
Q Consensus 143 D~v~~~~~l~ 152 (257)
|+|+......
T Consensus 85 d~vih~A~~~ 94 (342)
T 1y1p_A 85 AGVAHIASVV 94 (342)
T ss_dssp SEEEECCCCC
T ss_pred CEEEEeCCCC
Confidence 9999765543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=81.24 E-value=6.1 Score=30.92 Aligned_cols=89 Identities=15% Similarity=-0.041 Sum_probs=51.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 145 (257)
-.+.+|+=+|+|. |......+..+ +.+|+++|.+++..+.+.+. ...... .+..+. -...|+|
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~l~~~---l~~aDvV 217 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIAEM----------GMEPFHISKAAQE---LRDVDVC 217 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----------TSEEEEGGGHHHH---TTTCSEE
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC----------CCeecChhhHHHH---hcCCCEE
Confidence 4578999999874 44444444443 56999999988655443321 222221 122111 1358999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+..-..+.+.. ...+.+|||+.++-.
T Consensus 218 i~~~p~~~i~~------~~l~~mk~~~~lin~ 243 (293)
T 3d4o_A 218 INTIPALVVTA------NVLAEMPSHTFVIDL 243 (293)
T ss_dssp EECCSSCCBCH------HHHHHSCTTCEEEEC
T ss_pred EECCChHHhCH------HHHHhcCCCCEEEEe
Confidence 98766544432 233467888876543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=81.24 E-value=5.1 Score=30.76 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCeEEEecC-CCChhHHHHHHHh-CCCceEEEEeCChhH-HHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC--
Q 025144 69 TGDNVLDVCC-GSGDLSFLLSEQV-GSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS-- 138 (257)
Q Consensus 69 ~~~~vLdiG~-G~G~~~~~l~~~~-~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 138 (257)
.++++|=.|+ |+|.+...+++.+ ..+.+|+.++.+++. ++...+.+ + .++.++..|+.+.. +.
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~----~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---P----AKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---S----SCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---C----CCceEEEccCCCHHHHHHHHHHH
Confidence 3567888887 3666666665543 236789999987643 23333222 1 46788899998742 00
Q ss_pred ---CC---cccEEEecccccC--------cc-----cH-----------HHHHHHHHhcccCCCEEEEEe
Q 025144 139 ---DC---FFDAITMGYGLRN--------VV-----DK-----------RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ---~~---~~D~v~~~~~l~~--------~~-----~~-----------~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+ ..|+++.+..... +. +. ..+.+.+.+.++++|.++.+.
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 12 7899997765432 11 11 123555666666678877654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.98 E-value=8.6 Score=29.56 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=49.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCC------------hhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS------------KNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.++++|=.|++ |.+...+++.+ ..+.+|+++|.+ ++.++...+.+...+ .++.++.+|+.+.
T Consensus 12 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 86 (278)
T 3sx2_A 12 TGKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQADVRDR 86 (278)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECCTTCH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCCCCCH
Confidence 35677777754 44554444433 236799999976 555555444443332 5789999999874
Q ss_pred C-----CC-----CCcccEEEecccccC
Q 025144 136 P-----FS-----DCFFDAITMGYGLRN 153 (257)
Q Consensus 136 ~-----~~-----~~~~D~v~~~~~l~~ 153 (257)
. +. .+..|+++.+.....
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~ 114 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGIAP 114 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 2 10 146899998766543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=80.88 E-value=0.45 Score=38.13 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=38.5
Q ss_pred CeeEE-EccCCCC--CCCCCcccEEEecccccCc-----------ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 124 NIEWV-EGDALDL--PFSDCFFDAITMGYGLRNV-----------VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 124 ~~~~~-~~d~~~~--~~~~~~~D~v~~~~~l~~~-----------~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++ ++|..+. .++++++|+|++......- ......+..++++|+|||.+++..
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 35666 8887642 2456789999987654321 124667888899999999987753
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=80.70 E-value=15 Score=27.22 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCC-CCCCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALD-LPFSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~-~~~~~~~~D~v 145 (257)
.+.+||=.| |+|..+..+++.+ ..+.+|++++.+++.++.... .++ .++.+|+.+ +.-.-+..|+|
T Consensus 20 ~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D~v 88 (236)
T 3e8x_A 20 QGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASIDAV 88 (236)
T ss_dssp -CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCSEE
T ss_pred CCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCCEE
Confidence 356888777 5676766666553 236799999998876544322 367 888999862 21112468999
Q ss_pred EecccccC
Q 025144 146 TMGYGLRN 153 (257)
Q Consensus 146 ~~~~~l~~ 153 (257)
+.+.....
T Consensus 89 i~~ag~~~ 96 (236)
T 3e8x_A 89 VFAAGSGP 96 (236)
T ss_dssp EECCCCCT
T ss_pred EECCCCCC
Confidence 97766543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.65 E-value=16 Score=30.78 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=54.6
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh-------hh-h--cc--CCCeeEEEccCCCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-------VS-K--AC--YKNIEWVEGDALDLPF 137 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~-~--~~--~~~~~~~~~d~~~~~~ 137 (257)
.+|.-||+|. |......+.. .+.+|+++|.+++.++.+.+.... .+ . .. .....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~-- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL-- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH--
Confidence 4799999886 4433322222 367999999999988877654321 00 0 00 011222 3343221
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
...|+|+..-. ....-...+++++...++++..++
T Consensus 113 --~~aDlVIeaVp-e~~~~k~~v~~~l~~~~~~~~ii~ 147 (463)
T 1zcj_A 113 --STVDLVVEAVF-EDMNLKKKVFAELSALCKPGAFLC 147 (463)
T ss_dssp --TTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --CCCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCeEEE
Confidence 34799886432 211113567788888888876654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=80.31 E-value=15 Score=26.92 Aligned_cols=93 Identities=8% Similarity=0.048 Sum_probs=54.1
Q ss_pred eEEEecCCCChhHHHHHHHhC--CCceEEEEeCChh-HHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C--CCCcccEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLP-F--SDCFFDAI 145 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~~D~v 145 (257)
+||=.| |+|.....+++.+- .+.+|++++.+++ .++..... . .++.++.+|+.+.. . .-...|+|
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIID----H----ERVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHT----S----TTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccC----C----CceEEEECCCCCHHHHHHHHcCCCEE
Confidence 477777 56666666655442 5779999998876 43322211 1 57899999998742 0 01357999
Q ss_pred EecccccCcccHHHHHHHHHhcccC--CCEEEEEe
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKP--GSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~--gG~l~~~~ 178 (257)
+.+.....+. .+.+.+.++. .|.++.+.
T Consensus 78 v~~ag~~n~~-----~~~~~~~~~~~~~~~iv~iS 107 (221)
T 3r6d_A 78 FVGAMESGSD-----MASIVKALSRXNIRRVIGVS 107 (221)
T ss_dssp EESCCCCHHH-----HHHHHHHHHHTTCCEEEEEE
T ss_pred EEcCCCCChh-----HHHHHHHHHhcCCCeEEEEe
Confidence 9876543332 3344444432 24665543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.08 E-value=11 Score=29.05 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=48.2
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCc--eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC-cccEEEe
Q 025144 72 NVLDVCCGS-GDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC-FFDAITM 147 (257)
Q Consensus 72 ~vLdiG~G~-G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~v~~ 147 (257)
+|.=||+|. |......+.. .+. +|+++|.+++.++.+++. + -......|..+. -. ..|+|+.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~--~g~~~~V~~~d~~~~~~~~~~~~----g-----~~~~~~~~~~~~---~~~~aDvVil 68 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINPESISKAVDL----G-----IIDEGTTSIAKV---EDFSPDFVML 68 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCHHHHHHHHHT----T-----SCSEEESCGGGG---GGTCCSEEEE
T ss_pred EEEEEecCHHHHHHHHHHHh--cCCCcEEEEEeCCHHHHHHHHHC----C-----CcccccCCHHHH---hcCCCCEEEE
Confidence 677888764 4333222223 234 899999998877765432 1 110112222221 12 5799987
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
.-... ....++..+...++++..++
T Consensus 69 avp~~---~~~~v~~~l~~~l~~~~iv~ 93 (281)
T 2g5c_A 69 SSPVR---TFREIAKKLSYILSEDATVT 93 (281)
T ss_dssp CSCHH---HHHHHHHHHHHHSCTTCEEE
T ss_pred cCCHH---HHHHHHHHHHhhCCCCcEEE
Confidence 54322 23456777777888877543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 257 | ||||
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-19 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-17 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-16 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-15 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 8e-15 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-14 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-14 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-13 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-13 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 4e-13 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 4e-13 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 2e-12 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 4e-12 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-11 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 2e-11 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-11 | |
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 3e-11 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 1e-10 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 1e-10 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 3e-10 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-09 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-09 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 3e-09 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-08 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 5e-08 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 6e-08 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 8e-08 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 1e-07 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 1e-07 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 2e-07 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-07 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 9e-07 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 7e-06 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 1e-05 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-05 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 2e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 4e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-04 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 4e-04 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 5e-04 | |
| d2ih2a1 | 223 | c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina | 0.001 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.001 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 0.003 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 0.003 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 0.004 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 81.2 bits (199), Expect = 4e-19
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 6/165 (3%)
Query: 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113
H + + + + VLD+ G+G + S V + IG+D +K + +ASS
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSF 57
Query: 114 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 173
+ + PF D FD IT Y + D RKA+ E RVLK R
Sbjct: 58 AQEKGVENVRFQQGTAESL---PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGR 114
Query: 174 ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218
++D P + L+E ++
Sbjct: 115 FLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSAN 159
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 77.6 bits (190), Expect = 2e-17
Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 20/194 (10%)
Query: 46 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105
+D +SF + +WK +++D CG G L +L + K G+D +
Sbjct: 12 DDYVSFLVNTVWK--------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 63
Query: 106 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 165
L+ A L+ L + +D L ++ L++
Sbjct: 64 LLAEARELFRLLPYDSEFLEGDATEIEL-----NDKYDIAICHAFLLHMTTPETMLQKMI 118
Query: 166 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEY--QYLKSSIREFL 223
+K G +I + + + + + +++D G+ ++ + + ++
Sbjct: 119 HSVKKGGKIICFEPH-----WISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173
Query: 224 TGKDLEKLALEIGF 237
G + E+G
Sbjct: 174 IGMKIPIYLSELGV 187
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 75.0 bits (184), Expect = 1e-16
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
V G VL+ GSG L+ L VG G+VI + + A
Sbjct: 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG 146
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176
N V D D D D + +++ + L+ R+L G + V
Sbjct: 147 QPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMV 198
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (173), Expect = 6e-15
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
Query: 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVCCGSGDLS 84
S + + P ++ L+ G + + +S GD VL+ GSG +S
Sbjct: 54 RSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMS 113
Query: 85 FLLSEQVGSQGKVIGLDFSKNQLSMA--------SSRQDLVSKACYKNIEWVEGDALDLP 136
LS+ VGSQG+VI + K+ +A S + + N++++ D
Sbjct: 114 LFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173
Query: 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176
FDA+ + ++++ L + LK G +V
Sbjct: 174 EDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAV 210
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 69.7 bits (170), Expect = 8e-15
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 11/151 (7%)
Query: 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVCCGSGDLSF 85
+ F ++ I + A + G + G ++L+V GSG++S
Sbjct: 42 IVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSS 101
Query: 86 LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145
+ + +G + ++ ++ L A +L N+ D D + I
Sbjct: 102 YILYALNGKGTLTVVERDEDNLKKA--MDNLSEFYDIGNVRTSRSDIADFISDQMYDAVI 159
Query: 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISV 176
++ D +++ ++KPGS +
Sbjct: 160 A------DIPDPWNHVQKIASMMKPGSVATF 184
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.5 bits (172), Expect = 1e-14
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 18/169 (10%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ---- 114
K GD +D+ G G+ + + G G + + + +
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELK 264
Query: 115 ---DLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY--GLRNVVDKRKALEESFRVLK 169
L ++ +D + D K +E+ + K
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAK 324
Query: 170 PGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218
G +I L S + T I + ++N + Y + S
Sbjct: 325 VGCKIISLK---SLRSLTYQINFYNVEN-----IFNRLKVQRYDLKEDS 365
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 2e-14
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 118
+ D +D+ G G + ++ + G++ + A +
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFR 199
Query: 119 KAC------YKNIEWVEGDALDLPFSDCFFDA-ITMGYGLRNVVDKRKALEESFRVLKPG 171
K + GD L + + + + + L+E F +K G
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEG 259
Query: 172 SRISVLD 178
RI
Sbjct: 260 GRIVSSK 266
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 66.5 bits (161), Expect = 1e-13
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 12/172 (6%)
Query: 49 LSFGQHRIWK-------RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
+S +HRI K G +LD+ GSG++ + G G+D
Sbjct: 6 ISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT--GTGID 63
Query: 102 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKAL 161
S + A R + + + ++ D A
Sbjct: 64 MSSLFTAQAKRRAE---ELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 120
Query: 162 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213
E + LKPG + + + P T I + + + GL +
Sbjct: 121 ELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFD 172
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 65.4 bits (158), Expect = 2e-13
Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Query: 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 121
+ + K + VLDV G G ++ + V KV+ D +++ L +A + +
Sbjct: 8 MQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 122 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181
+ ++ PF+D F +T + + + E++RVLK G ++ ++D +
Sbjct: 65 VEYVQGDAEQM---PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121
Query: 182 STQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218
++ + ++ + L+ +
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEA 158
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.4 bits (158), Expect = 4e-13
Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFL-- 86
E F + + + + + + + K+ +L + G+G++
Sbjct: 4 VESFRRFLNHSTEHQCMQEFM----DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQIL 59
Query: 87 ---LSEQVGSQGKVIGLDFSKNQLSM------ASSRQDLVSKACYKNIEWVEGDALDLPF 137
++ G ++ S Q++ S + V A +K +
Sbjct: 60 SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119
Query: 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181
+D I M L V D L+ +L +++ ++ +
Sbjct: 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 65.1 bits (158), Expect = 4e-13
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 14/160 (8%)
Query: 22 YG-RVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA---VSWSGAKTGDNVLDVC 77
G +R S+ ++ + P + + ++ + + K GD ++D
Sbjct: 54 PGEIIRTSAGKK--GYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTG 111
Query: 78 CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137
GSG + +L+ VGS GKV + + +A ++ +E + +
Sbjct: 112 VGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA--------ESNLTKWGLIERVTIKVRD 163
Query: 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177
FD + +V D +++ + LK G R + +
Sbjct: 164 ISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATV 203
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 62.8 bits (151), Expect = 2e-12
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 17/210 (8%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
++ R P Y N+ + R NV D+ C G + +
Sbjct: 13 DMIQRSVPGYSNIITAIGMLAERF----------VTADSNVYDLGCSRGAATLSARRNIN 62
Query: 93 SQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
K+IG+D S+ + + +E + D + + +
Sbjct: 63 QPNVKIIGIDNSQPMVERCRQHIA--AYHSEIPVEILCNDIRHVEIKNASMVILNFTLQF 120
Query: 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
D+ L + + L P + + + + + + A+GY E
Sbjct: 121 LPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK--RANGYSELEV 178
Query: 212 YQYLKS--SIREFLTGKDLEKLALEIGFSR 239
Q + ++ + + + +GFS+
Sbjct: 179 SQKRTALENVMRTDSIETHKVRLKNVGFSQ 208
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 61.0 bits (147), Expect = 4e-12
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+ + + D +DV CG+G ++ E G +V +D + +S +L
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTT--EMNLQRH 78
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
N+ +EGDA + D +G + + + + LKPG RI V
Sbjct: 79 GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRII---KDKLKPGGRIIVTAI 135
Query: 180 NKSTQPFTTAIQE---WMIDNVVVPVASGYGLAE 210
T+ + ++ + +A G L
Sbjct: 136 LLETKFEAMECLRDLGFDVNITELNIARGRALDR 169
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 60.1 bits (144), Expect = 2e-11
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 8/149 (5%)
Query: 33 ELFSRIAPVYDNL--NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQ 90
EL++ +A YD + + + + VLD+ CG+G + L+E+
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 91 VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150
+V+GLD + L +A + + V A F
Sbjct: 63 ---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT--MFFSTIM 117
Query: 151 LRNVVDKRKALEESFRVLKPGSRISVLDF 179
+ D RK + LKPG + DF
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVF-ITDF 145
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.3 bits (143), Expect = 2e-11
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 18/171 (10%)
Query: 51 FGQHRIW-----KRMAVSWSGA----KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
F +R W K A+ G + + VL + SG L++ V + ++
Sbjct: 29 FDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVE 87
Query: 102 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG-LRNVVDKRKA 160
+S NI + DA + + + Y +
Sbjct: 88 YSAKPFEKLLEL-----VRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEIL 142
Query: 161 LEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 211
+ LK + ++ +S TA E + +V+ + + + +
Sbjct: 143 KANAEFFLKEKGEVVIMVKARSIDS--TAEPEEVFKSVLKEMEGDFKIVKH 191
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.3 bits (145), Expect = 2e-11
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116
+K + VLDV CG+G S +L E+ S V D +
Sbjct: 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRK 103
Query: 117 VSKACYKNIEWVEGDALD--LPFSDCFFDAITMGYGL-------RNVVDKRKALEESFRV 167
IE LD +P D F I +G + + R AL+ +
Sbjct: 104 EPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM 163
Query: 168 LKPGSRISVLDFN 180
++PG + + N
Sbjct: 164 VRPGGLLVIDHRN 176
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 3e-11
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 49 LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108
+S + + + G LDV GSG L+ + VG GKVIG+D K +
Sbjct: 57 ISAPHMHAYALELL-FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVD 115
Query: 109 MASSRQDL--VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFR 166
+ + + ++ V GD + +DAI +G V +
Sbjct: 116 DSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV------PQALID 169
Query: 167 VLKPGSRI 174
LKPG R+
Sbjct: 170 QLKPGGRL 177
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 57.8 bits (139), Expect = 1e-10
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 4/124 (3%)
Query: 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 121
+ K G +VL + SG + +S+ VG +GK+ G++FS L +
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN-- 123
Query: 122 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181
I + D I + ++ + LK G + ++
Sbjct: 124 IVPILGDATKPEEYRALVPKVDVIFEDVAQPT--QAKILIDNAEVYLKRGGYGMIAVKSR 181
Query: 182 STQP 185
S
Sbjct: 182 SIDV 185
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 57.9 bits (138), Expect = 1e-10
Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 14/150 (9%)
Query: 32 QELFSRIAPVYDNLNDLLSFG-QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQ 90
E + RIA YD++ + + HR+ + K VLD+ G+G S
Sbjct: 6 WEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSL---FL 60
Query: 91 VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150
+V+ +D SK L +A + S F + +G
Sbjct: 61 QERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP--------FPSGAFEAVLALGDV 112
Query: 151 LRNVVDKRKALEESFRVLKPGSRISVLDFN 180
L V +K KA E RVL P + N
Sbjct: 113 LSYVENKDKAFSEIRRVLVPDGLLIATVDN 142
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 3e-10
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 13/188 (6%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRI---WKRM---AVSWSGAKTGDNVLDVCCGSGDLSFLLS 88
+ YD + L + W+ A++ + + G VL+V G + +
Sbjct: 13 WGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQ 72
Query: 89 EQVGSQGKVIGLDFSKNQLSMA---SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145
E + ++ + + RQ E V D F +D
Sbjct: 73 EA--PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130
Query: 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE--WMIDNVVVPVA 203
+ + +FR+LKPG ++ + + + + M + VP
Sbjct: 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPAL 190
Query: 204 SGYGLAEE 211
G E
Sbjct: 191 LEAGFRRE 198
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.2 bits (132), Expect = 2e-09
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
VLDV G+G L ++ KVIG++ S + + ++
Sbjct: 34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKA---NKLDHVVTIIK 88
Query: 130 GDALDLPFSDCFFDAITM---GYGLRNVVDKRKALEESFRVLKPGSRI 174
G ++ D I GY L L + L P I
Sbjct: 89 GKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 136
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 54.3 bits (129), Expect = 2e-09
Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 24/229 (10%)
Query: 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQV 91
+++ A +YD L + ++ W + D+ LD+ CG+G+L+ L +
Sbjct: 2 CYNKFAHIYDKLIR--ADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK- 58
Query: 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151
+ L + R + C D+
Sbjct: 59 FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII-- 116
Query: 152 RNVVDKRKALEESFRVLKPGSR--ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG-- 207
+ D +K + LK G + + K +Q + D V + +
Sbjct: 117 -DSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDD 175
Query: 208 -----------LAEEYQYLKSSIRE-FLTGKDLEKLALEIGFSRAKHYE 244
E Y+ E +D+EK + +
Sbjct: 176 LVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD 224
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 53.8 bits (128), Expect = 3e-09
Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 18/195 (9%)
Query: 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116
+ + + K GD+VLD+ CG G G+ G+D ++ ++ A R
Sbjct: 12 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARN 69
Query: 117 VSKACYKNIEWVEGDALDLPFSDCFFDAI-----TMGYGLRNVVDKRKALEESFRVLKPG 171
+ + + + D+ + + Y A R L+PG
Sbjct: 70 MKRRFK--VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127
Query: 172 SRISVLDFN-----KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE----F 222
+ + + + + + I+ + + E L S+ F
Sbjct: 128 GYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYF 187
Query: 223 LTGKDLEKLALEIGF 237
+ + +G
Sbjct: 188 VDFTRMVDGFKRLGL 202
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 51.3 bits (121), Expect = 2e-08
Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 18/222 (8%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
+ R+ P Y ++N + + + + + K VLD+ CG G SFLL +
Sbjct: 5 YYRVFPTYTDINSQEYRSRIETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGFEV 62
Query: 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154
+ + +K+ N+E++ GDA L F D FD + + +
Sbjct: 63 -------VGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115
Query: 155 --VDKRKALEESFRVLKPGSRISVLDFN-----KSTQPFTTAIQEWMIDNVVVPVASGYG 207
++ + +E RVLKP + + + + Q++ I V+P
Sbjct: 116 EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISK-VIPDQEERT 174
Query: 208 LAEEYQYLKSSIREFLTGKDLEKLAL-EIGFSRAKHYELSGG 248
+ E++ + S R + L + + E G
Sbjct: 175 VVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGN 216
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 50.1 bits (119), Expect = 5e-08
Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 19/159 (11%)
Query: 40 PVYDNLNDLLSFG--QHRIW-----KRMA-----VSWSGAKTGDNVLDVCCGSGDLSFLL 87
VYD ++ G ++RIW K A + K +L + +G +
Sbjct: 35 KVYDE--KIIKIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHV 92
Query: 88 SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147
++ V ++++ + I + +++ +
Sbjct: 93 ADIADKG-IVYAIEYAPRIMRELLDA----CAERENIIPILGDANKPQEYANIVEKVDVI 147
Query: 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186
+ ++ + LK G + +S
Sbjct: 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT 186
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 49.9 bits (118), Expect = 6e-08
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 19/137 (13%)
Query: 47 DLLSFGQHRIWKRMAVSW---SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103
L G ++ + V+ VLD+ CG G + ++ + GLD S
Sbjct: 59 AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA-LPEITTFGLDVS 117
Query: 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 163
K + + Y + + + LPFSD DAI Y EE
Sbjct: 118 KVAIKA--------AAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEE 162
Query: 164 SFRVLKPGSRISVLDFN 180
RV+KPG +
Sbjct: 163 LARVVKPGGWVITATPG 179
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (118), Expect = 8e-08
Identities = 29/143 (20%), Positives = 41/143 (28%), Gaps = 13/143 (9%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
VLDV CG+G LS ++ VIG+D S ++ + I +
Sbjct: 39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA---KELVELNGFSDKITLLR 93
Query: 130 GDALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186
G D+ + MGY L L L G I F
Sbjct: 94 GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI----FPDKCSIH 149
Query: 187 TTAI-QEWMIDNVVVPVASGYGL 208
+ D + YG
Sbjct: 150 LAGLEDSQYKDEKLNYWQDVYGF 172
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 48.2 bits (114), Expect = 1e-07
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
+ + + +LD G G S + E ++IG+D L +A + S
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDR 73
Query: 121 CYKNIEW-VEGDALDLPFSDCFFDAITMGYGL---------RNVVDKRKALEESFRVLKP 170
E D L D I M G+ R + + ++ L+++ +L P
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP 133
Query: 171 GSRISVLDFNKSTQP 185
G RI V+ F+
Sbjct: 134 GGRIVVISFHSLEDR 148
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 18/158 (11%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 118
+ + W G G VL++ G+G + ++S VG +G V+ +++S+ +A +
Sbjct: 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE--- 121
Query: 119 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178
+ +N+ +V GD +D I + G+ V E F LK G R+ V
Sbjct: 122 RLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 175
Query: 179 FNKSTQPFT---------TAIQEWMIDNVVVPVASGYG 207
K ++ + + ++ + G
Sbjct: 176 NLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLG 213
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 48.6 bits (115), Expect = 2e-07
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 21/164 (12%)
Query: 42 YDNLNDLLSFGQHRIWKRMAVSWS------------GAKTGDNVLDVCCGSGDLSFLLSE 89
D + + G + +S AK + V+D+ G G LS L
Sbjct: 68 SDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLS--LPI 125
Query: 90 QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149
V + KVI ++ +++ + D D P + D I MGY
Sbjct: 126 AVYGKAKVIAIEKDPYTFKFL--VENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY 182
Query: 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193
+R + + ++ + K G+ I + + +
Sbjct: 183 VVR----THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETF 222
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
VLDV CG+G LS ++ KV+G+D S+ + + + I ++
Sbjct: 36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEI---LYQAMDIIRLNKLEDTITLIK 90
Query: 130 GDALDLPFSDCFFDAI---TMGYGLRNVVDKRKALEESFRVLKPGSRI 174
G ++ D I MGY L L + L G +
Sbjct: 91 GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV 138
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 48.0 bits (113), Expect = 2e-07
Identities = 29/207 (14%), Positives = 71/207 (34%), Gaps = 13/207 (6%)
Query: 50 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109
+F + M +++ N+L++ GD + L E + ++ S+ +S
Sbjct: 1 NFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISH 57
Query: 110 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE-SFRVL 168
A R + E +D I + + L ++ D L+ + L
Sbjct: 58 AQGRLKDGITYIHSRFED--------AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWL 109
Query: 169 KPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 228
G R+ ++ N + A++ +I + + + Y ++ + L
Sbjct: 110 AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169
Query: 229 EKLALE-IGFSRAKHYELSGGLMGNLV 254
+ I F +++ L +++
Sbjct: 170 QVTYRSGIFFKALANFQWDQILQTDIL 196
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 46.5 bits (109), Expect = 9e-07
Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 29/240 (12%)
Query: 13 TSRSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA--VSWSGAKTG 70
T R + YGR E S + D+ + L+S + ++ A WS +
Sbjct: 31 TGRPAYAGRYGR-----PFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRH- 84
Query: 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130
VLDV G+G + ++ + + ++ + +R+ + EG
Sbjct: 85 --VLDVGGGNGGMLAAIALRA-PHLRGTLVELAGP---AERARRRFADAGLADRVTVAEG 138
Query: 131 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190
D ++ + D L R L+PG R+ VLD
Sbjct: 139 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRF 198
Query: 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250
++D ++ G T ++ LA G + A +
Sbjct: 199 FSTLLDLRMLTFMGG----RVR-----------TRDEVVDLAGSAGLALASERTSGSTTL 243
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 44.0 bits (102), Expect = 7e-06
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Query: 42 YDNLNDLLSF--GQHRIWKRMA---VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK 96
Y D R + +A + LD+ G G + L + G
Sbjct: 35 YKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVS-- 92
Query: 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD 156
+ L+ + Q + A +++ ++P D +D I + D
Sbjct: 93 IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWSQDAFLHSPD 150
Query: 157 KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193
K K +E RVLKP +++ D K ++IQ
Sbjct: 151 KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPI 187
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 19/154 (12%), Positives = 31/154 (20%), Gaps = 37/154 (24%)
Query: 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD--------- 115
G GD ++D+ G L + + DF+
Sbjct: 47 PGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWT 104
Query: 116 ----------------------LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153
L + V P D + +
Sbjct: 105 PAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC 164
Query: 154 VV----DKRKALEESFRVLKPGSRISVLDFNKST 183
R AL +LKPG + +
Sbjct: 165 ACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP 198
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 37/242 (15%), Positives = 75/242 (30%), Gaps = 40/242 (16%)
Query: 13 TSRSQFRFSYGR-----VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMA--VSWS 65
T R + YG+ + + + F + LL+ Q + A W+
Sbjct: 30 TGRPTYESIYGKPFYEDLAGRPDLRASF----------DSLLACDQDVAFDAPAAAYDWT 79
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125
+ VLDV G G + ++ + L+ + + ++R L + +
Sbjct: 80 NVRH---VLDVGGGKGGFAAAIARR-APHVSATVLEMAGT---VDTARSYLKDEGLSDRV 132
Query: 126 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
+ VEGD + ++ D + L L+PG RI + + + +
Sbjct: 133 DVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHEN 192
Query: 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245
+ D ++ G T + + LA G + +L
Sbjct: 193 SFNEQFTEL-DLRMLVFLGGA---------------LRTREKWDGLAASAGLVVEEVRQL 236
Query: 246 SG 247
Sbjct: 237 PS 238
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 42.1 bits (97), Expect = 2e-05
Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 39/212 (18%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG 92
+F R Y+ + + + +++ G+G +
Sbjct: 4 HIFERFVNEYERWFLV----HRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAV------- 52
Query: 93 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152
IG++ S+ +A R V K +N+ D FD M +
Sbjct: 53 PLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLK----------DESFDFALMVTTIC 102
Query: 153 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEY 212
V D +AL+E++R+LK G + V ++ + +
Sbjct: 103 FVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK------------------E 144
Query: 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244
+ + F + ++L L + GF K +
Sbjct: 145 KSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 40.9 bits (94), Expect = 4e-05
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 15/127 (11%)
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ----------D 115
G VL CG LS Q V+G + S+ + + + D
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGD 73
Query: 116 LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSR 173
A W A + + + ++ ++
Sbjct: 74 FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 133
Query: 174 ISVLDFN 180
++
Sbjct: 134 GLLITLE 140
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 38.8 bits (89), Expect = 2e-04
Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 5/107 (4%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
LD+ CG+G S L+ D + ++ + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDVTAW---DKNPASMANLERIKAAEGLDNLQTDLVDLNTL 90
Query: 133 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
D + M + + R KPG ++
Sbjct: 91 TFDGEYDFILSTVVMMF--LEAQTIPGLIANMQRCTKPGGYNLIVAA 135
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 38.4 bits (88), Expect = 4e-04
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 5/126 (3%)
Query: 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116
R ++ LD G G ++ L ++ + L+ K+ L A
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHMLEEAKRELAG 138
Query: 117 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176
+ + + + D K + + L P I
Sbjct: 139 MPVGKFILASMETATLPPNTYDLIVIQWTAIYL---TDADFVKFFKHCQQALTPNGYIFF 195
Query: 177 LDFNKS 182
+ +
Sbjct: 196 KENCST 201
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 37.9 bits (87), Expect = 5e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 8/116 (6%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
++V G G +++Q IG+D K+ LS A + V K + D
Sbjct: 35 HVEVGSGKGAFVSGMAKQ-NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL 93
Query: 133 LDLPFSDCFFDAITM-------GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181
D + + + L+ R+L I N+
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR 149
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109
VS + A G VL+ C G E G+ + +G++ L +
Sbjct: 9 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL 59
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 15/147 (10%), Positives = 39/147 (26%), Gaps = 39/147 (26%)
Query: 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA-------------- 110
+G +G ++D+ G L + + DF +
Sbjct: 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWS 107
Query: 111 ----------------SSRQDLVSKACYKNIEWV---EGDALDLPFSDCFFDAITMGYGL 151
++ + + + + DA+ + L
Sbjct: 108 MYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL 167
Query: 152 ----RNVVDKRKALEESFRVLKPGSRI 174
++ ++AL+ +L+PG +
Sbjct: 168 EAVSPDLASFQRALDHITTLLRPGGHL 194
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 35.6 bits (81), Expect = 0.003
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 19/138 (13%)
Query: 42 YDNLNDLLSFGQHR-----IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK 96
Y + ++ L + G VL++ G G + L++E V K
Sbjct: 38 YAHTHEALPILPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DK 94
Query: 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD 156
V+ ++ ++ + AS + Y NI+ + GD + +D + + ++
Sbjct: 95 VVSVEINEKMYNYASKL-----LSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC 149
Query: 157 KRKALEESFRVLKPGSRI 174
+ + LK G +
Sbjct: 150 ------KPYEQLKEGGIM 161
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.4 bits (80), Expect = 0.003
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 50 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109
S+G+ ++ V D++LD+ CG G + L+++V S +
Sbjct: 33 SYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKE 92
Query: 110 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLK 169
+I V D + + IT + +EE +LK
Sbjct: 93 NIKLN----NLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK 148
Query: 170 PGSRIS-VLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 206
I V+ + + +++ + V + GY
Sbjct: 149 DNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGY 186
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 34.7 bits (79), Expect = 0.004
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 14/133 (10%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 120
A+ + G +D G + + E+ G+VIGLD ++ A
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHLPGLTV 66
Query: 121 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR---------KALEESFRVLKPG 171
N ++ L D I G+ + + LE++ VL PG
Sbjct: 67 VQGNFRHLKRHLAALGVER--VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG 124
Query: 172 SRISVLDFNKSTQ 184
R+ V+ F+
Sbjct: 125 GRLVVIAFHSLED 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.96 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.95 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.95 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.95 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.94 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.93 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.92 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.92 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.91 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.9 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.9 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.89 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.89 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.89 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.88 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.88 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.88 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.87 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.87 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.85 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.84 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.83 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.82 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.81 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.81 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.81 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.8 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.8 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.79 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.77 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.77 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.76 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.76 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.76 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.75 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.73 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.72 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.71 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.71 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.69 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.69 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.69 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.66 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.65 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.63 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.61 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.6 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.58 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.55 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.51 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.47 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.44 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.39 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.38 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.37 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.35 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.32 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.26 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.25 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.24 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.21 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.2 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.19 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.17 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.11 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.07 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.05 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.04 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.04 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.03 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.02 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.99 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.98 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.98 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.96 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.95 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.95 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.94 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.85 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.84 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.8 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.73 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.7 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.67 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.66 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.65 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.65 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.53 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.2 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.09 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.06 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.92 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.75 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.62 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.59 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.36 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.35 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.35 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.33 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.31 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.18 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.18 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.16 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.13 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.08 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.03 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.85 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.76 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.7 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.62 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.6 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.39 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.15 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.96 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.89 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.81 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.76 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.75 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.68 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.63 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.5 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.0 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.95 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.94 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.93 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.87 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.83 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.79 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 94.6 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.89 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.84 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.41 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.04 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.96 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.83 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.61 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.59 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.58 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.91 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.86 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 91.59 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.58 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.71 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.67 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.18 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.85 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.44 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.29 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.89 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.44 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.22 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.19 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 86.9 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 86.48 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.16 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 85.41 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 84.92 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.6 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 84.52 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.08 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.22 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.05 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.05 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 83.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 81.72 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.52 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.96 E-value=4.1e-28 Score=187.43 Aligned_cols=163 Identities=21% Similarity=0.317 Sum_probs=132.8
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.++...++.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.+..+. +++.++++|.+++++++
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~---~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCC-CCCSCT
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccc---ccccccccccccccccc
Confidence 3556678899999999999999999999876 46899999999999999998765543 68999999999999889
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
++||+|++..+++|++|+..++++++++|||||++++.++..+..........+....... ..
T Consensus 80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 142 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDY-----------------SH 142 (231)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCT-----------------TC
T ss_pred cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhccc-----------------Cc
Confidence 9999999999999999999999999999999999999988877765554443333211100 11
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeee
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+.++.+++.++|+++||++++...+
T Consensus 143 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 143 HRAWKKSDWLKMLEEAGFELEELHCF 168 (231)
T ss_dssp CCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 24568899999999999998876544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=2.1e-27 Score=183.73 Aligned_cols=165 Identities=23% Similarity=0.292 Sum_probs=134.5
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+.....+.|+.+|||||||+|.++..+++. ..+|+|+|+|+.|++.|+++....+. +++.++++|++++++
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~---~~~~~~~~d~~~~~~ 78 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLPF 78 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCCS
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccc---ccccccccccccccc
Confidence 345677788999999999999999999999876 36899999999999999998865543 589999999999999
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
++++||+|++..+++|++++..++++++++|||||.+++.++..+..+....+........ . .
T Consensus 79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------~ 141 (234)
T d1xxla_ 79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLR-----D------------P 141 (234)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHH-----C------------T
T ss_pred cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhC-----C------------C
Confidence 9999999999999999999999999999999999999999888776655444333222100 0 0
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...+.++..++.++++++||.+.+...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 169 (234)
T d1xxla_ 142 SHVRESSLSEWQAMFSANQLAYQDIQKW 169 (234)
T ss_dssp TCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccccCCHHHHHHHHHHCCCceeEEEEe
Confidence 1123457889999999999988766554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.95 E-value=3.3e-26 Score=175.88 Aligned_cols=186 Identities=12% Similarity=0.115 Sum_probs=131.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.+++.+|||+|||+|..+..+++.. .++.+|+|+|+|+.|++.|+++++..+.. .++.+...|..+.+ .+.+|+|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~--~~~~~~~~d~~~~~--~~~~d~i 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVE--IKNASMV 112 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS--SCEEEECSCTTTCC--CCSEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc--chhhhccchhhccc--cccceee
Confidence 4678899999999999999999864 36789999999999999999988654432 56788888887664 4679999
Q ss_pred EecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 146 TMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 146 ~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
++..++|+++ ++..+|++++++|||||.+++.+...+........................................+
T Consensus 113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred EEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 9999999984 78899999999999999999998887666543322111111111110000000011111112344567
Q ss_pred CHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 224 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
+.+++.++|+++||+.++.+-.. ..+..++|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~-~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQC-FNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEE-TTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeee-CceEEEEEEC
Confidence 99999999999999988876332 2355677776
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.95 E-value=3e-26 Score=182.00 Aligned_cols=165 Identities=20% Similarity=0.165 Sum_probs=131.3
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+.....++++.+|||||||+|..+..+++++ +.+|+|+|+|+.|++.|+++....+.. .++++.++|+.+++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~--~~v~~~~~d~~~l~ 130 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLA--DNITVKYGSFLEIP 130 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCT--TTEEEEECCTTSCS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccc--cccccccccccccc
Confidence 33444455678899999999999999999999885 578999999999999999988765543 68999999999999
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
+++++||+|++..+++|++++..++++++++|||||.+++.++.............+....
T Consensus 131 ~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~------------------- 191 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI------------------- 191 (282)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH-------------------
T ss_pred ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHh-------------------
Confidence 9999999999999999999999999999999999999999876654332211111111100
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
....+.+.+++.++++++||+.+...+.
T Consensus 192 -~~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 192 -KLHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp -TCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred -ccCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 0012457889999999999998887754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.7e-26 Score=175.50 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=127.9
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 32 ~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
-++||++++.||.+...... .+...+.......++.+|||||||+|.++..+. +++|+|+|+.|++.++
T Consensus 3 ~~~f~~~a~~Yd~w~~~~~~----~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~ 71 (208)
T d1vlma_ 3 WHIFERFVNEYERWFLVHRF----AYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIAR 71 (208)
T ss_dssp THHHHHTHHHHHHHHHHTHH----HHHHHHHHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccc
Confidence 47899999999987543221 122222222233456689999999999887663 5689999999999987
Q ss_pred hhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHH
Q 025144 112 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 191 (257)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 191 (257)
++ ++.++++|++++++++++||+|++.++++|++++..++++++++|+|||.+++.+++...... .
T Consensus 72 ~~----------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~--~-- 137 (208)
T d1vlma_ 72 KR----------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLG--R-- 137 (208)
T ss_dssp HT----------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHH--H--
T ss_pred cc----------ccccccccccccccccccccccccccccccccccccchhhhhhcCCCCceEEEEecCCcchhH--H--
Confidence 64 689999999999988899999999999999999999999999999999999998876543211 1
Q ss_pred HHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 192 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
...... .. .. . ....++++.+++.++|+++||+++++..
T Consensus 138 -~~~~~~-~~---~~-~--------~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 138 -EYEKNK-EK---SV-F--------YKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp -HHHHTT-TC----C-C--------STTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -hhhhcc-cc---cc-c--------cccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 111000 00 00 0 0112467999999999999999887654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.6e-26 Score=173.83 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=118.5
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
....++.+|||||||+|..+..+++.. ..+|+++|+|+.|++.|++++...+. .++.++++|++++++++++||+
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~---~~~~f~~~d~~~~~~~~~~fD~ 130 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK---RVRNYFCCGLQDFTPEPDSYDV 130 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG---GEEEEEECCGGGCCCCSSCEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccc---cccccccccccccccccccccc
Confidence 355677899999999999999887553 35899999999999999998865443 5789999999999888899999
Q ss_pred EEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhcc
Q 025144 145 ITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 222 (257)
Q Consensus 145 v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (257)
|++..+++|+++. ..++++++++|||||.+++.+........... .. ....
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~--------------------~~-------~~~~ 183 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD--------------------VD-------SSVC 183 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEET--------------------TT-------TEEE
T ss_pred cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccccc--------------------CC-------ceee
Confidence 9999999999764 57999999999999999998765543221100 00 0124
Q ss_pred CCHHHHHHHHHHcCceeeEEeee
Q 025144 223 LTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
++.+++.++++++||++++....
T Consensus 184 ~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 184 RDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp EBHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHcCCEEEEEEEe
Confidence 57899999999999999887653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.6e-24 Score=168.54 Aligned_cols=164 Identities=19% Similarity=0.116 Sum_probs=130.2
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+++.|+.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.++++....+.. +++.++++|+.++
T Consensus 21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~--~~v~~~~~d~~~~- 95 (245)
T d1nkva_ 21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVS--ERVHFIHNDAAGY- 95 (245)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCCTTC-
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhcc--ccchhhhhHHhhc-
Confidence 44557778899999999999999999999998874 579999999999999999987766543 5799999999997
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
.++++||+|++..+++|++++..++++++++|||||.+++.+......+...........
T Consensus 96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~-------------------- 155 (245)
T d1nkva_ 96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGV-------------------- 155 (245)
T ss_dssp CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTC--------------------
T ss_pred cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhcc--------------------
Confidence 457899999999999999999999999999999999999987665443322222111110
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.....+.+..++...++++||+++.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 156 SSTSDFLTLPGLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp SCGGGSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred CCCcccCCHHHHHHHHHHcCCEEEEEEeC
Confidence 00123567889999999999998875443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.92 E-value=1.8e-24 Score=168.65 Aligned_cols=155 Identities=15% Similarity=0.063 Sum_probs=121.8
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
..+.++..+...+..+|||+|||+|..+..++... ..+|+++|+|+.|++.|+++.... ++++++++|+.+++
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~d~~~~~ 153 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCC
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc-----ccceeEEccccccc
Confidence 44556666677778899999999999999988764 348999999999999999887543 56899999999998
Q ss_pred CCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 137 FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
+++++||+|++..+++|+++ ...+|++++++|+|||.+++.+.......... . .. .
T Consensus 154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~-----------d--------~~-d-- 211 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-----------D--------KE-D-- 211 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-----------E--------TT-T--
T ss_pred cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee-----------c--------cc-C--
Confidence 88899999999999999976 45889999999999999998775443211100 0 00 0
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
....++.++++++++++||++++...
T Consensus 212 ----~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 212 ----SSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp ----TEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred ----CceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 01245889999999999999988765
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=5.5e-24 Score=165.43 Aligned_cols=136 Identities=32% Similarity=0.372 Sum_probs=108.8
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 30 ERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 30 ~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
...++||+++..||......... .+.+.+...+ ..+++.+|||+|||+|..+..+++. +.+|+|+|+|+.|+
T Consensus 4 ~~~~~yd~~a~~Yd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l 77 (246)
T d2avna1 4 RSWEFYDRIARAYDSMYETPKWK---LYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEML 77 (246)
T ss_dssp CHHHHHHHHHHHHGGGGCSHHHH---HHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHH
T ss_pred cHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHHHhcCCCCEEEEECCCCchhccccccc---ceEEEEeecccccc
Confidence 45789999999999765443322 2333332222 2346679999999999999999865 57999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec-ccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-YGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+.|+++. ...++.+|++++++++++||+|++. .+++|++|+..+|+++.++|||||.+++..++
T Consensus 78 ~~a~~~~---------~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 78 EVAREKG---------VKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHHHHT---------CSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccccc---------ccccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 9999874 2346789999999989999999975 67899999999999999999999999887654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.90 E-value=4.7e-24 Score=165.95 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=102.7
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
.|+.+|..||.+.... ..+..+...+...+ ...++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|+
T Consensus 2 ~y~~~A~~YD~l~~~~--~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~ 76 (246)
T d1y8ca_ 2 CYNKFAHIYDKLIRAD--VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAE 76 (246)
T ss_dssp CHHHHHHHHHHHTTCS--CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhcc
Confidence 4788888888654321 01223334443333 2244579999999999999999976 468999999999999999
Q ss_pred hhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec-ccccCcc---cHHHHHHHHHhcccCCCEEEEEe
Q 025144 112 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-YGLRNVV---DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.+..+ .+++++++|+.++++ +++||+|+|. .+++++. ++.+++++++++|||||.+++..
T Consensus 77 ~~~~~~~----~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 77 NKFRSQG----LKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp HHHHHTT----CCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccccC----ccceeeccchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 9876543 579999999998876 4689999975 5666664 67789999999999999997643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.90 E-value=1.4e-22 Score=158.05 Aligned_cols=167 Identities=19% Similarity=0.169 Sum_probs=124.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
+.+...+...+..+|||||||+|..+..+++.+ |+.+++++|+ +++++.++++....+.. .++.++.+|+.+. .
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~rv~~~~~D~~~~-~- 143 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS--DRVDVVEGDFFEP-L- 143 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT--TTEEEEECCTTSC-C-
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcc--cchhhccccchhh-c-
Confidence 445566677778899999999999999999995 7889999998 67999999988765543 6899999998763 2
Q ss_pred CCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhH
Q 025144 139 DCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 216 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
+.+||+|++.+++|++++. .++|++++++|||||.+++.+...............+.-.++..
T Consensus 144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~--------------- 208 (253)
T d1tw3a2 144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVF--------------- 208 (253)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHH---------------
T ss_pred ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhh---------------
Confidence 3569999999999999754 57899999999999999998865433322111111111011000
Q ss_pred HHHhccCCHHHHHHHHHHcCceeeEEeeecC
Q 025144 217 SSIREFLTGKDLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
.....++.++++++++++||++++++....
T Consensus 209 -~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~ 238 (253)
T d1tw3a2 209 -LGGALRTREKWDGLAASAGLVVEEVRQLPS 238 (253)
T ss_dssp -HSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred -CCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 011245889999999999999999887643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.89 E-value=7.1e-23 Score=157.01 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=116.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. .++.++++|+.+.++ +++||+|++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-------~~~~~~~~~~~~~~~-~~~fD~I~~ 87 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-------DGITYIHSRFEDAQL-PRRYDNIVL 87 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGCCC-SSCEEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-------ccccccccccccccc-ccccccccc
Confidence 45669999999999999999865 4689999999999999988753 579999999988775 578999999
Q ss_pred cccccCcccHHHHHHHHH-hcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 148 GYGLRNVVDKRKALEESF-RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~-~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
..+++|++++...+.+++ ++|+|||.+++..++..... .....+.. ... ....... . .......+.++.+
T Consensus 88 ~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~--~~~~~~~~---~~~--~~~~~~~-~-~~~~~h~~~~~~~ 158 (225)
T d2p7ia1 88 THVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS--RQIAVKMG---IIS--HNSAVTE-A-EFAHGHRCTYALD 158 (225)
T ss_dssp ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHH--HHHHHHTT---SSS--STTCCCH-H-HHHTTCCCCCCHH
T ss_pred cceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHH--HHHHHHhh---hhh--hhhhcCc-c-ccceeeeeccCHH
Confidence 999999999999999998 78999999999877654321 11111110 000 0000000 0 0111123567999
Q ss_pred HHHHHHHHcCceeeEEee
Q 025144 227 DLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~ 244 (257)
+++++++++||++++...
T Consensus 159 ~l~~~l~~~Gf~i~~~~~ 176 (225)
T d2p7ia1 159 TLERDASRAGLQVTYRSG 176 (225)
T ss_dssp HHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEE
Confidence 999999999999887553
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=1.3e-22 Score=155.65 Aligned_cols=107 Identities=30% Similarity=0.477 Sum_probs=95.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
++++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++....+ .++.++..|+.++++++++||+|+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVI 107 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccc----ccccccccccccccccCcCceEEE
Confidence 356789999999999999999875 5799999999999999998876543 578899999999999899999999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+..+++|++ ++.++|+++.++|||||.+++...+
T Consensus 108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999986 6788999999999999999887654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=1.2e-22 Score=158.35 Aligned_cols=141 Identities=26% Similarity=0.354 Sum_probs=110.4
Q ss_pred HHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH
Q 025144 32 QELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109 (257)
Q Consensus 32 ~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 109 (257)
.++|+.+++.||.+.... .......+...+.......++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.
T Consensus 2 ~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~ 78 (251)
T d1wzna1 2 YELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRV 78 (251)
T ss_dssp CGGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHH
T ss_pred cchhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccc
Confidence 368999999999975432 12222223344444556667789999999999999999976 5689999999999999
Q ss_pred HHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec-ccccCc--ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 110 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-YGLRNV--VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|+++.+..+ .++.+.++|+++++++ ++||+|++. .+++++ ++...+|++++++|||||.+++...+
T Consensus 79 a~~~~~~~~----~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 79 ARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp HHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccc----ccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999976543 4799999999998876 689999986 466666 46778999999999999999875433
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.88 E-value=2.6e-21 Score=150.66 Aligned_cols=167 Identities=19% Similarity=0.165 Sum_probs=122.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+...+...+..+|||||||+|..+..+++.+ |+.+++++|+ +++++.++++++..+.. .++.+..+|..+ +.+
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~--~ri~~~~~d~~~-~~p 145 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA--DRVTVAEGDFFK-PLP 145 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCS
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCc--ceeeeeeeeccc-ccc
Confidence 344455566777899999999999999999995 7889999997 78999999888765543 689999999876 333
Q ss_pred CCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhH-HHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 139 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
.+||+|++.+++|++++ ...+|++++++|||||.++|.+...+..... ......+.-.++..
T Consensus 146 -~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~-------------- 210 (256)
T d1qzza2 146 -VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTF-------------- 210 (256)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHH--------------
T ss_pred -ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhh--------------
Confidence 46999999999999975 4678999999999999999988653322111 11111111111110
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeEEeeecC
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
.....++.++|+++++++||++++.+....
T Consensus 211 --~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~ 240 (256)
T d1qzza2 211 --MGGRVRTRDEVVDLAGSAGLALASERTSGS 240 (256)
T ss_dssp --HSCCCCCHHHHHHHHHTTTEEEEEEEEECC
T ss_pred --CCCccCCHHHHHHHHHHCCCceeEEEEeCC
Confidence 011345889999999999999999887643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=3.7e-21 Score=151.62 Aligned_cols=194 Identities=13% Similarity=0.147 Sum_probs=141.5
Q ss_pred chhHHHHhhhhhhhhhhhhhh-h-------------hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC
Q 025144 28 SSERQELFSRIAPVYDNLNDL-L-------------SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 93 (257)
.++++..||-..+.|..+-+. . -...+....+.+...+.+.++.+|||||||.|.++..+++.+
T Consensus 6 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-- 83 (291)
T d1kpia_ 6 VEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-- 83 (291)
T ss_dssp HHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--
T ss_pred HhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--
Confidence 577778888766666554111 0 011133334556667789999999999999999999999886
Q ss_pred CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc---------HHHHHHHH
Q 025144 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---------KRKALEES 164 (257)
Q Consensus 94 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~ 164 (257)
+.+++|+++|+++++.++++....+.. .++.+...|... ++++||.|++..++.|+.+ ...+++++
T Consensus 84 g~~v~git~s~~q~~~a~~~~~~~~l~--~~v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i 158 (291)
T d1kpia_ 84 DVNVIGLTLSENQYAHDKAMFDEVDSP--RRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKF 158 (291)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHSCCS--SCEEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHH
T ss_pred CcceeeccchHHHHHHHHHHHHhhccc--hhhhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHH
Confidence 579999999999999999998765543 577888877643 4688999999999999865 47899999
Q ss_pred HhcccCCCEEEEEeecCCCchhHH-----------HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHH
Q 025144 165 FRVLKPGSRISVLDFNKSTQPFTT-----------AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL 233 (257)
Q Consensus 165 ~~~Lk~gG~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (257)
+++|||||.+++.++..+...... ....|+... +.| ...+.+.+++..+++
T Consensus 159 ~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky-iFp-----------------gg~lps~~~~~~~~e 220 (291)
T d1kpia_ 159 YNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE-IFP-----------------GGRLPRISQVDYYSS 220 (291)
T ss_dssp HHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH-TCT-----------------TCCCCCHHHHHHHHH
T ss_pred HHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH-hcC-----------------CCCCCCHHHHHhhhc
Confidence 999999999999887765432211 011122110 000 013558899999999
Q ss_pred HcCceeeEEeeec
Q 025144 234 EIGFSRAKHYELS 246 (257)
Q Consensus 234 ~~Gf~~~~~~~~~ 246 (257)
++||++.++..+.
T Consensus 221 ~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 221 NAGWKVERYHRIG 233 (291)
T ss_dssp HHTCEEEEEEECG
T ss_pred ccccccceeeecc
Confidence 9999998887764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=7e-21 Score=149.60 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=141.2
Q ss_pred chhHHHHhhhhhhhhhhhhhh--------------hhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC
Q 025144 28 SSERQELFSRIAPVYDNLNDL--------------LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 93 (257)
.++++..||-..+.|..+-+. .....+....+.+...+.+.++.+|||||||.|..+.++++..
T Consensus 7 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-- 84 (285)
T d1kpga_ 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-- 84 (285)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--
T ss_pred HHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--
Confidence 456777777666666543211 0011233334566667789999999999999999999999986
Q ss_pred CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCC
Q 025144 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPG 171 (257)
Q Consensus 94 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~g 171 (257)
+.+|+|+++|++.++.++++....+.. .++.+...|..++ +++||.|++..++.|+. +...++++++++||||
T Consensus 85 g~~v~git~s~~Q~~~a~~~~~~~g~~--~~v~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg 159 (285)
T d1kpga_ 85 DVNVVGLTLSKNQANHVQQLVANSENL--RSKRVLLAGWEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD 159 (285)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHTCCCC--SCEEEEESCGGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred CcceEEEeccHHHHHHHHHHHHhhhhh--hhhHHHHhhhhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCC
Confidence 589999999999999999988765544 6899999998776 36899999999999994 4589999999999999
Q ss_pred CEEEEEeecCCCchhH-----------HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceee
Q 025144 172 SRISVLDFNKSTQPFT-----------TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRA 240 (257)
Q Consensus 172 G~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 240 (257)
|.+++.++........ .....++... +.| ...+.+.+++..+++++||++.
T Consensus 160 G~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~ky-iFp-----------------gg~lPsl~~~~~~~e~agf~v~ 221 (285)
T d1kpga_ 160 GVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFP-----------------GGRLPSIPMVQECASANGFTVT 221 (285)
T ss_dssp CEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TST-----------------TCCCCCHHHHHHHHHTTTCEEE
T ss_pred CcEEEEEEeccCchhhccccCCcchhhhchhhHHHHH-hcc-----------------CCCCCChhhHHHHHHHhchhhc
Confidence 9999877664322110 0111112110 000 0135588999999999999999
Q ss_pred EEeeec
Q 025144 241 KHYELS 246 (257)
Q Consensus 241 ~~~~~~ 246 (257)
++..+.
T Consensus 222 ~~~~~~ 227 (285)
T d1kpga_ 222 RVQSLQ 227 (285)
T ss_dssp EEEECH
T ss_pred ccccch
Confidence 887763
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.87 E-value=1e-21 Score=155.26 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=98.5
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
..+.++.+|||+|||+|.++..+++.++.+.+|+|+|+|+.+++.|+++.+..+ .++.+.+.|+.+++++ ++||+
T Consensus 23 ~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~~~-~~fD~ 97 (281)
T d2gh1a1 23 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIELN-DKYDI 97 (281)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCCS-SCEEE
T ss_pred hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----cccccccccccccccc-CCceE
Confidence 356777899999999999999999876556799999999999999999886543 4789999999998765 67999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|++.++++|++++..++++++++|||||.+++.+..
T Consensus 98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999999999999999999999999988754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=6.2e-21 Score=149.97 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=123.5
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...+.+.++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++.+..+.. .++.+...|..++
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~--~~~~~~~~d~~~~-- 114 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTN--RSRQVLLQGWEDF-- 114 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCS--SCEEEEESCGGGC--
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccc--cchhhhhhhhhhh--
Confidence 3456666788999999999999999999999885 579999999999999999998766543 5677888887665
Q ss_pred CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 138 SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
+++||.|++..+++|+. +...++++++++|||||.+++.+.................... .....++
T Consensus 115 -~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~----------~~~~dfI 183 (280)
T d2fk8a1 115 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFET----------ARFIKFI 183 (280)
T ss_dssp -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHH----------HHHHHHH
T ss_pred -ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhccccccccc----------ccccchh
Confidence 47899999999999996 4589999999999999999987655433211100000000000 0000001
Q ss_pred HHHH---hccCCHHHHHHHHHHcCceeeEEeee
Q 025144 216 KSSI---REFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 216 ~~~~---~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...+ ..+.+.+++.++++++||++.+...+
T Consensus 184 ~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 184 VTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred hhhccCCCcccchHhhhhhHHhhccccceeeec
Confidence 1111 12558899999999999999887765
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=1.2e-20 Score=141.74 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||||||+|..+..++++ +.+|+++|+|+.|++.++++.+..+. +++.+...|+.+.++ +++||+|+
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~d~~~~~~-~~~fD~I~ 100 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGL---DNLQTDLVDLNTLTF-DGEYDFIL 100 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEECCTTTCCC-CCCEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccc---cchhhhheecccccc-cccccEEE
Confidence 334459999999999999999987 57999999999999999988765443 578999999998775 57899999
Q ss_pred ecccccCccc--HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+..+++|+++ ...++++++++|+|||.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999999964 5689999999999999998877654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=3.3e-20 Score=141.48 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=115.3
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFF 142 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 142 (257)
.+++.|+.+|||+|||+|..+.++++.. +...|+|+|+|+.|++.++++.... +++..+..|..... ..+..+
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~ 142 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVE 142 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTCC
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeeccCcccccccc
Confidence 5678999999999999999999999984 6789999999999999999886543 57888888887753 455678
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhcc
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 222 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (257)
|++++...+++.+++..++.++++.|||||.+++............. .
T Consensus 143 ~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~-~------------------------------- 190 (230)
T d1g8sa_ 143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-K------------------------------- 190 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-H-------------------------------
T ss_pred eeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH-H-------------------------------
Confidence 88888888888889999999999999999999887654322111000 0
Q ss_pred CCHHHHHHHHHHcCceeeEEeeec
Q 025144 223 LTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
...++..+.|+++||++++..++.
T Consensus 191 ~~~~e~~~~L~~aGF~ive~idL~ 214 (230)
T d1g8sa_ 191 EIFKEQKEILEAGGFKIVDEVDIE 214 (230)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC
Confidence 012567789999999999988764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.3e-20 Score=145.02 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=108.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHh-----CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe--eEEEccCCC----
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQV-----GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI--EWVEGDALD---- 134 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~d~~~---- 134 (257)
...+..+|||||||+|.++..+++.+ +...+++++|+|+.|++.++++++..... .++ .+...++++
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL--ENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC--TTEEEEEECSCHHHHHHH
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc--ccccccchhhhhhhhcch
Confidence 33445589999999999988877653 11347899999999999999987543211 233 334444332
Q ss_pred --CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhh
Q 025144 135 --LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEY 212 (257)
Q Consensus 135 --~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (257)
.+.++++||+|++.++++|++|+..++++++++|+|||.+++...+.... ....+..... . ....
T Consensus 115 ~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~-~~~l~~~~~~-~----~~~~------- 181 (280)
T d1jqea_ 115 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSG-WDKLWKKYGS-R----FPQD------- 181 (280)
T ss_dssp HTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSH-HHHHHHHHGG-G----SCCC-------
T ss_pred hcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcch-HHHHHHHHHH-h----cCCC-------
Confidence 23567899999999999999999999999999999999998887665332 2111111111 0 0000
Q ss_pred hhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 213 QYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
....+++..++.++|++.||....
T Consensus 182 -----~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 182 -----DLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp -----TTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred -----cccccCCHHHHHHHHHHCCCceEE
Confidence 112356889999999999997543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.82 E-value=3.4e-19 Score=136.99 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=123.0
Q ss_pred HHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
..+...+. .....+|||||||+|.++..+++++ |+.++++.|+ |+.++.+.. ..+++++.+|+.+. .
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~---------~~ri~~~~gd~~~~-~ 137 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFAS-V 137 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTTC-C
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhhccCC---------CCCeEEecCCcccc-c
Confidence 33444444 4566899999999999999999995 8899999998 544432211 16899999999763 3
Q ss_pred CCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchh---HHHHHHHHHhhhhhhhhccCCchhhh
Q 025144 138 SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPF---TTAIQEWMIDNVVVPVASGYGLAEEY 212 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (257)
| ..|++++.+++|++++ ..++|++++++|+|||.+++.+...+.... .......+.-.++....
T Consensus 138 p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~--------- 206 (244)
T d1fp1d2 138 P--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG--------- 206 (244)
T ss_dssp C--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS---------
T ss_pred c--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCC---------
Confidence 3 3599999999999975 678899999999999999999876544322 11111111111111111
Q ss_pred hhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...++.++|.++|+++||+.+++.....+.+.++-++|
T Consensus 207 -------g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 207 -------GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp -------CCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred -------CcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 12357899999999999999999877778888888887
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.3e-21 Score=149.96 Aligned_cols=151 Identities=16% Similarity=0.114 Sum_probs=105.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccC------------------------
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY------------------------ 122 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~------------------------ 122 (257)
..++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|+++++.......
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 345779999999999988777654 234799999999999999988754321100
Q ss_pred --CCe-eEEEc----cCCCCCCCCCcccEEEecccccCcc----cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHH
Q 025144 123 --KNI-EWVEG----DALDLPFSDCFFDAITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 191 (257)
Q Consensus 123 --~~~-~~~~~----d~~~~~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 191 (257)
..+ ..... +....+++.++||+|++.++++|+. ++..+++++.++|||||.+++.++.........
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~--- 203 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG--- 203 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET---
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec---
Confidence 000 11111 2222346678999999999999884 577899999999999999999876543311000
Q ss_pred HHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 192 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
... .....++.++++++|+++||++++....
T Consensus 204 -----------------~~~------~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 204 -----------------KRE------FSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp -----------------TEE------EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----------------ccc------ccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 000 0013568999999999999998887543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.81 E-value=9.9e-20 Score=141.66 Aligned_cols=110 Identities=21% Similarity=0.296 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v 145 (257)
..++.+|||+|||+|..+..+++. ...+|+|+|+|+.|++.|+++.+..+.. .++.+.++|+...++ .+++||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~--~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRR--FKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCS--SEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCC--cceEEEEcchhhhcccccccceEE
Confidence 567889999999999999999876 2358999999999999999987654332 478999999977654 46789999
Q ss_pred EecccccCcc----cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++.+++||+. +...+++++.++|||||.+++..++
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9999999873 4567899999999999999876644
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.1e-20 Score=144.87 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=109.4
Q ss_pred cCCchhHHHHhhhhhhhhhhhhhhhhh-------hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceE
Q 025144 25 VRCSSERQELFSRIAPVYDNLNDLLSF-------GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKV 97 (257)
Q Consensus 25 ~~~~~~~~~~y~~~a~~y~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v 97 (257)
..+.+++...|+..+..|+........ .....+.+.+...+. .++.+|||||||+|..+..+++. ...++
T Consensus 3 ~~~~e~~~~~w~~~~~~yd~~~~~l~~~~~~~m~~w~~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~--~~~~v 79 (229)
T d1zx0a1 3 FAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEA--PIDEH 79 (229)
T ss_dssp SCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTS--CEEEE
T ss_pred cCccccchhhhhhhhhcCCcHHHHHHHhchHHHHHHHHHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHc--CCCeE
Confidence 356788889999988888765432111 123333344444443 56779999999999999999876 24689
Q ss_pred EEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEE-----ecccccCcccHHHHHHHHHhcccC
Q 025144 98 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT-----MGYGLRNVVDKRKALEESFRVLKP 170 (257)
Q Consensus 98 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~-----~~~~l~~~~~~~~~l~~~~~~Lk~ 170 (257)
+++|+|+.+++.|+++.+... .++.++..+.... ++++++||.|+ +...++|+.+...++++++++|||
T Consensus 80 ~~id~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lkp 155 (229)
T d1zx0a1 80 WIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 155 (229)
T ss_dssp EEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred EEeCCCHHHHHHHHHHhhhcc----cccccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCC
Confidence 999999999999999876543 4677777776543 46678899988 456677788899999999999999
Q ss_pred CCEEEEE
Q 025144 171 GSRISVL 177 (257)
Q Consensus 171 gG~l~~~ 177 (257)
||.+++.
T Consensus 156 GG~~~~~ 162 (229)
T d1zx0a1 156 GGVLTYC 162 (229)
T ss_dssp EEEEEEC
T ss_pred CcEEEEE
Confidence 9999763
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=4.4e-19 Score=135.94 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--------------
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------- 119 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------- 119 (257)
...+.+.+...+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.+++.++++......
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence 4455666667778888999999999999999999976 68999999999999999887542110
Q ss_pred ccCCCeeEEEccCCCCC-CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 120 ACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 120 ~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
....++.++++|+.+++ ...+.||+|+...++++++ +....++++.++|||||.+++..+...
T Consensus 107 ~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 107 SSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp ETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred ecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 11247899999998764 5568899999999999994 678899999999999999888776653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.2e-19 Score=137.66 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=106.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.|+++.+..+ .+..+.++|..+ ..+.++||+|+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~~~-~~~~~~fD~V~ 189 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSLEA-ALPFGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCHHH-HGGGCCEEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcC----CceeEEeccccc-cccccccchhh
Confidence 467889999999999999887754 5689999999999999999887654 366788888765 34568899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++...+ ....++..+.++|||||++++..+.. ...+
T Consensus 190 ani~~~---~l~~l~~~~~~~LkpGG~lilSgil~-----------------------------------------~~~~ 225 (254)
T d2nxca1 190 ANLYAE---LHAALAPRYREALVPGGRALLTGILK-----------------------------------------DRAP 225 (254)
T ss_dssp EECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------------------GGHH
T ss_pred hccccc---cHHHHHHHHHHhcCCCcEEEEEecch-----------------------------------------hhHH
Confidence 875443 45678899999999999998865321 0236
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
++.+.++++||++++...... |..++.+|
T Consensus 226 ~v~~~~~~~Gf~~~~~~~~~~--Wv~l~~~r 254 (254)
T d2nxca1 226 LVREAMAGAGFRPLEEAAEGE--WVLLAYGR 254 (254)
T ss_dssp HHHHHHHHTTCEEEEEEEETT--EEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEECC--EEEEEEeC
Confidence 788899999999888766532 55666655
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=2.3e-19 Score=138.58 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=103.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+...+.+.|+.+|||+|||+|.++..|++.++|..+++++|.++++++.|+++++........++.+.++|+.+.++
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 34577788999999999999999999999999998989999999999999999999876543333689999999998888
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++++||.|++ +++++...+.++.++|||||.+++..+
T Consensus 165 ~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 165 PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence 8899999986 578889999999999999999987653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=8.7e-19 Score=137.26 Aligned_cols=101 Identities=29% Similarity=0.430 Sum_probs=89.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++. +++.+.++|+.++++++++||+|+
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~ 152 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAII 152 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc--------ccccceeeehhhccCCCCCEEEEe
Confidence 4456799999999999999999884 7789999999999999998775 689999999999999999999999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+.+++++ +++++++|||||.+++..++...
T Consensus 153 ~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 153 RIYAPCK-------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp EESCCCC-------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred ecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 9888776 45789999999999998876543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=4.3e-19 Score=136.27 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=93.4
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+.+.|+.+|||+|||+|.++..+++..++..+|+++|.++++++.|+++++..... .++.+..+|+.+. +++
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~--~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI--GNVRTSRSDIADF-ISD 152 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC--TTEEEECSCTTTC-CCS
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC--CceEEEEeeeecc-ccc
Confidence 4556778999999999999999999999998888889999999999999999998765432 6899999999875 456
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.||.|++ +++++...+.++.++|||||.+++..
T Consensus 153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEe
Confidence 88999986 45677889999999999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=4.8e-19 Score=132.72 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=96.7
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc---------cCCCeeEEEccC
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---------CYKNIEWVEGDA 132 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------~~~~~~~~~~d~ 132 (257)
...+.++|+.+|||+|||+|..+..|+++ +.+|+|+|+|+.|++.|+++.+..... ....+.++++|.
T Consensus 13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 34457889999999999999999999987 689999999999999999987543210 114567889998
Q ss_pred CCCC-CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 133 LDLP-FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 133 ~~~~-~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.+++ .+...||+|++..+++++. +....++++++.|||||.+++.......
T Consensus 90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 8875 3346799999999999986 4678999999999999998887665433
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=1.7e-18 Score=130.14 Aligned_cols=110 Identities=13% Similarity=0.037 Sum_probs=89.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+.+.|+.+|||+|||+|..+.++++.. +..+|+|+|+|+.|++.++++.+.. +++.++..|....+.....+|
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~ 124 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVE 124 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCC
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccc
Confidence 3678899999999999999999999986 5569999999999999999887653 689999999988654334344
Q ss_pred EEE-ecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 144 AIT-MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 144 ~v~-~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+. +...+.+..+...+++++++.|||||.+++...
T Consensus 125 ~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 125 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 332 234566677888999999999999999988764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=8.8e-18 Score=125.28 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=96.5
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...+...++.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++++..+.. ..++++..+|..+ .+
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~-~~~i~~~~~d~~~-~~ 115 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYE-NV 115 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCT-TSCEEEEECSTTT-TC
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCc-cceEEEEEcchhh-hh
Confidence 455666778888999999999999999998875 358999999999999999987654432 1468999999987 55
Q ss_pred CCCcccEEEecccccCccc-HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVD-KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~-~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++||+|+++.++++..+ ...+++++.+.|+|||.+++..
T Consensus 116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 6789999999998887765 4778999999999999987754
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=8.3e-19 Score=137.06 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=104.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc------------------------
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC------------------------ 121 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~------------------------ 121 (257)
....+.+|||+|||+|......+... ..+|+++|+|+.|++.+++.++......
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 44567899999999998775554442 3489999999999999998764321100
Q ss_pred ---CCCeeEEEccCCCC------CCCCCcccEEEecccccCcc----cHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 122 ---YKNIEWVEGDALDL------PFSDCFFDAITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 122 ---~~~~~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
.....+...|+... +.++++||+|++.++++++. +...++++++++|||||.|++.+..........
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence 00123455566432 23456899999999999884 578899999999999999998875432211000
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
. ..+ ....++.++++++|+++||++++...
T Consensus 209 -------------------~-~~~------~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 209 -------------------E-ARL------TVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp -------------------T-EEE------ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred -------------------C-ccc------ccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 0 000 01246999999999999999887553
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=1.7e-17 Score=125.80 Aligned_cols=110 Identities=23% Similarity=0.178 Sum_probs=91.5
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 140 (257)
.+.+.|+.+|||+|||+|..+.++++.+++...|+++|+|+.|++.++++.+.. +++..+..|.... +...+
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCC
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCccccccccc
Confidence 457889999999999999999999999988899999999999999999887543 5788888888653 23346
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+|+|++ .+.+.++...+++++++.|||||.+++....
T Consensus 143 ~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 143 KVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 7888775 4556667888999999999999999886543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.76 E-value=2e-18 Score=127.96 Aligned_cols=118 Identities=21% Similarity=0.250 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+..+..++..+.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++++..+.. ++++++++|..
T Consensus 18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~--~~v~~~~gda~ 92 (186)
T d1l3ia_ 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLG--DNVTLMEGDAP 92 (186)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC--TTEEEEESCHH
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCC--cceEEEECchh
Confidence 3445677777889999999999999999999999865 468999999999999999998876543 68999999998
Q ss_pred CCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+...+.+.||+|++....++ ...+++.+.+.|||||.+++...
T Consensus 93 ~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence 76666788999999876554 46789999999999999977653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=4.7e-18 Score=132.03 Aligned_cols=114 Identities=23% Similarity=0.326 Sum_probs=97.3
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+..++.+.|+.+|||+|||+|.++..+++..++..+|+++|.++++++.|+++++..+.. .++.+...|+.. .+
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~--~~v~~~~~d~~~-~~ 168 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI--ERVTIKVRDISE-GF 168 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG--GGEEEECCCGGG-CC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc--cCcEEEeccccc-cc
Confidence 455777889999999999999999999999999888889999999999999999998876543 578888888754 34
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+...+|.|+. +++++...++++.++|||||.+++..+
T Consensus 169 ~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 169 DEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp SCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred cccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 5677998864 677899999999999999999987653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=4.5e-18 Score=128.35 Aligned_cols=111 Identities=25% Similarity=0.400 Sum_probs=95.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...++..+.+.++.+|||||||+|..+..+++.+++...|+++|+++++++.|+++++..+. .++.++++|..+...
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~---~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCCG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc---cccccccCchHHccc
Confidence 34466778899999999999999999999999887788999999999999999999876543 588999999887666
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.+++||+|++..+++++++ .+.+.|||||++++.
T Consensus 141 ~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred cccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 6788999999999988764 466789999999774
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.1e-16 Score=124.13 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=121.2
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
..+.+.+..+.... ..+.+|||+|||+|..+..++... |..+++++|+|+.+++.|+++.+..+. .++.++++|.
T Consensus 93 eTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~ 167 (274)
T d2b3ta1 93 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDW 167 (274)
T ss_dssp THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCST
T ss_pred chhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCc---ccceeeeccc
Confidence 35556665555543 345689999999999999999885 788999999999999999999876653 4799999998
Q ss_pred CCCCCCCCcccEEEecccccCcc-------------------------cHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 133 LDLPFSDCFFDAITMGYGLRNVV-------------------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~~-------------------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
.+ +.++++||+|+++...-... ...+++....+.|+|||.+++- +.
T Consensus 168 ~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig------- 238 (274)
T d2b3ta1 168 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HG------- 238 (274)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CC-------
T ss_pred cc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-EC-------
Confidence 77 34567899999975532111 1355788889999999998663 22
Q ss_pred HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 188 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
....+.+.++++++||..+++.....|..++++||
T Consensus 239 ----------------------------------~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 239 ----------------------------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ----------------------------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----------------------------------chHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 12346888999999999888887778889988886
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=4.8e-18 Score=134.84 Aligned_cols=121 Identities=24% Similarity=0.254 Sum_probs=88.3
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc-CCCeeEEEccCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~ 135 (257)
...++...++..++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++........ .....+...+....
T Consensus 44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T d1xvaa_ 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 120 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence 3445555555566789999999999999999976 5799999999999999998765432110 02344555555432
Q ss_pred C---CCCCcccEEEec-ccccCcc-------cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 136 P---FSDCFFDAITMG-YGLRNVV-------DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 136 ~---~~~~~~D~v~~~-~~l~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ...++||+|++. .+++|++ +...+|++++++|||||.+++...+
T Consensus 121 ~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 121 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp HHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 1 235789999975 4777774 3567999999999999999875543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=4.7e-17 Score=121.45 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~ 146 (257)
++..|||||||+|..+..+++. .|+..++|+|+++.++..+.++.+..+. .|+.++++|+..+. ++++++|.|+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l---~Nv~~~~~Da~~l~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRVY 104 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhc---cCchhcccchhhhhcccCchhhhccc
Confidence 3458999999999999999999 5889999999999999999998876553 69999999998764 7789999999
Q ss_pred ecccccCcccH--------HHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVDK--------RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~~--------~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.+...+.... ..+++.++++|||||.|.+.+
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 98888776532 579999999999999998764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.71 E-value=2.9e-16 Score=120.54 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=112.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
....+|||||||+|..+..+++++ |+.++++.|. +..++.+.. ..+++++.+|+.+. . ..+|++++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~---------~~rv~~~~gD~f~~-~--p~aD~~~l 144 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFTS-I--PNADAVLL 144 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTTC-C--CCCSEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhCcc---------cCceEEEecCcccC-C--CCCcEEEE
Confidence 344689999999999999999995 8889999998 544443221 16999999999873 2 25899999
Q ss_pred cccccCccc--HHHHHHHHHhcccCC---CEEEEEeecCCCchhHH---HHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 148 GYGLRNVVD--KRKALEESFRVLKPG---SRISVLDFNKSTQPFTT---AIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 148 ~~~l~~~~~--~~~~l~~~~~~Lk~g---G~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
.++||+++| ..++|+++++.|+|| |++++.+...+...... .....+.-.+.. ..+
T Consensus 145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G--------------- 208 (244)
T d1fp2a2 145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNG--------------- 208 (244)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTC---------------
T ss_pred EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCC---------------
Confidence 999999975 467899999999998 78888876544432211 111111111111 111
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
+.++.++|+++|+++||+.++++...+ ...++.++
T Consensus 209 -~ert~~e~~~ll~~AGf~~~~i~~~~~-~~svIE~~ 243 (244)
T d1fp2a2 209 -KERNEEEWKKLFIEAGFQHYKISPLTG-FLSLIEIY 243 (244)
T ss_dssp -CCEEHHHHHHHHHHTTCCEEEEEEEET-TEEEEEEE
T ss_pred -cCCCHHHHHHHHHHcCCceEEEEECCC-CeEEEEEe
Confidence 245789999999999999999887754 45555543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=7.9e-17 Score=122.19 Aligned_cols=113 Identities=27% Similarity=0.327 Sum_probs=93.2
Q ss_pred HHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCC
Q 025144 60 MAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDL 135 (257)
Q Consensus 60 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~ 135 (257)
.+++.+ .+.++.+|||||||+|..+..+++..++..+|+++|.++++++.|+++++..... ...++.+..+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 344444 6788999999999999999999998877889999999999999999988654321 235789999999877
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..++++||+|++..+++++++ .+.+.|||||++++..
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence 666788999999999888764 4678899999998754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.69 E-value=4.8e-16 Score=119.52 Aligned_cols=162 Identities=20% Similarity=0.173 Sum_probs=110.7
Q ss_pred HHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
..+...... ....+|||||||+|..+..+++.+ |+.++++.|+.+ .++.+.. ..++.+..+|+.+ +.
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~~~---------~~r~~~~~~d~~~-~~ 137 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIEDAPS---------YPGVEHVGGDMFV-SI 137 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTTTCCC---------CTTEEEEECCTTT-CC
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhhhccc---------CCceEEecccccc-cC
Confidence 334444333 345789999999999999999995 889999999844 3332221 1689999999976 33
Q ss_pred CCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCch---hHHHHHHHHHhhhhhhhhccCCchhhh
Q 025144 138 SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQP---FTTAIQEWMIDNVVVPVASGYGLAEEY 212 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (257)
| ..|++++.+++|.+++ ...+|++++++|+|||.+++.+...+... ........+.-.++....+
T Consensus 138 P--~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~-------- 207 (243)
T d1kyza2 138 P--KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPG-------- 207 (243)
T ss_dssp C--CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSS--------
T ss_pred C--CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCC--------
Confidence 3 3688889999999964 67889999999999999999876543221 1111111111111110000
Q ss_pred hhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCce
Q 025144 213 QYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 249 (257)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~ 249 (257)
...++.++++++|+++||+.++++....+.
T Consensus 208 -------g~ert~~e~~~ll~~AGf~~vkv~~~~~~~ 237 (243)
T d1kyza2 208 -------GKERTQKEFEDLAKGAGFQGFKVHCNAFNT 237 (243)
T ss_dssp -------CCCEEHHHHHHHHHHHCCSCEEEEEEETTE
T ss_pred -------CCcCCHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 123478999999999999999987664443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.2e-16 Score=124.55 Aligned_cols=116 Identities=27% Similarity=0.426 Sum_probs=94.0
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh--------ccCCCeeEEE
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------ACYKNIEWVE 129 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------~~~~~~~~~~ 129 (257)
...++..+.+.|+.+|||+|||+|.++..|++.+++..+|+++|+++++++.|+++++..+. ....++.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 34567778999999999999999999999999998889999999999999999998875421 1125899999
Q ss_pred ccCCCCC--CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 130 GDALDLP--FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 130 ~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.|+.+.. .++..||.|++ .++++...+.++.++|||||.+++..
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred cchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 9998753 45678999986 45677788999999999999998754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.66 E-value=1.1e-15 Score=113.97 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=90.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~ 146 (257)
....|||||||+|..+..+++.. |+..++|+|+++.++..|.++....+. +|+.++.+|+..+. ++++++|.|+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l---~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc---ccceeeecCHHHHhhhccCCceehhc
Confidence 34589999999999999999994 889999999999999999988866543 69999999998864 6788999999
Q ss_pred ecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.+...+... ...+|+.++++|||||.|.+.+
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8887665533 2688999999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=3.4e-16 Score=125.86 Aligned_cols=118 Identities=23% Similarity=0.242 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
....+++.+.+.....++.+|||||||+|.++..+++. + ..+|+++|.|+ +++.+++..+..+.. .++.++++|+
T Consensus 22 r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s~-~~~~a~~~~~~~~~~--~~i~~i~~~~ 96 (328)
T d1g6q1_ 22 RTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS-IIEMAKELVELNGFS--DKITLLRGKL 96 (328)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST-HHHHHHHHHHHTTCT--TTEEEEESCT
T ss_pred HHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCCH-HHHHHHHHHHHhCcc--ccceEEEeeh
Confidence 34555666655555567889999999999999888876 2 34899999986 677787776655443 6899999999
Q ss_pred CCCCCCCCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEE
Q 025144 133 LDLPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
.+++++++++|+|++....+.+ .....++..+.++|||||.++
T Consensus 97 ~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 97 EDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9998888999999986665544 457888999999999999885
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.3e-16 Score=126.61 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=95.4
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh------ccCCCeeEEE
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------ACYKNIEWVE 129 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~~~~ 129 (257)
.....+...+++.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|++..+.... ....++.+++
T Consensus 138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 344556677889999999999999999999999885 445899999999999999887654221 1125799999
Q ss_pred ccCCCCCCCCCcc--cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 130 GDALDLPFSDCFF--DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 130 ~d~~~~~~~~~~~--D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+.+.++.+..+ |+|++ +.+.+.+++...|.++.+.|||||.+++..
T Consensus 217 gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 217 GDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 9999876544444 66666 455667888999999999999999998754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.63 E-value=1e-15 Score=115.48 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=87.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..++..+.+.++.+|||||||+|..+..+++. ..+|+++|.++++++.|+++.... .++.++.+|.......
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~~-----~nv~~~~~d~~~g~~~ 131 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYEE 131 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCGG
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhcc-----cccccccCchhhcchh
Confidence 34667788999999999999999999988876 368999999999999999886543 6899999998764444
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.++||.|++...+.++++ .+.+.|||||+|++.
T Consensus 132 ~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp GCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred hhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 678999999988887753 456789999999774
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=2.2e-15 Score=120.40 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+++.+.+.....++.+|||||||+|.++..+++. + ..+|+++|.|+.+ ..+++..+..+.. .++.++++|..
T Consensus 18 ~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~~-~~a~~~~~~n~~~--~~v~~~~~~~~ 92 (316)
T d1oria_ 18 TLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSIS-DYAVKIVKANKLD--HVVTIIKGKVE 92 (316)
T ss_dssp HHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTTH-HHHHHHHHHTTCT--TTEEEEESCTT
T ss_pred HHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHHH-hhhhhHHHHhCCc--cccceEeccHH
Confidence 4455555544444457889999999999999988876 3 2489999999754 5566655443332 67999999999
Q ss_pred CCCCCCCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEE
Q 025144 134 DLPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+++.+.+++|+|++....+.+ .....++..+.+.|||||.++
T Consensus 93 ~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 93 EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred HcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 998888999999987665555 357889999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.3e-15 Score=117.20 Aligned_cols=118 Identities=20% Similarity=0.229 Sum_probs=91.8
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
..+.+++.+.+.....++.+|||||||+|.++..+++. ++ .+|+++|.|+.+.. +++.....+.. .++.++++|.
T Consensus 19 r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga-~~V~aid~s~~~~~-a~~~~~~~~~~--~~i~~~~~~~ 93 (311)
T d2fyta1 19 RTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSEILYQ-AMDIIRLNKLE--DTITLIKGKI 93 (311)
T ss_dssp HHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESSTHHHH-HHHHHHHTTCT--TTEEEEESCT
T ss_pred HHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHc-CC-CEEEEEeCHHHHHH-HHHHHHHhCCC--ccceEEEeeH
Confidence 45666677766666678889999999999999988876 32 48999999998764 44444333322 6899999999
Q ss_pred CCCCCCCCcccEEEecccccCcc---cHHHHHHHHHhcccCCCEEE
Q 025144 133 LDLPFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~ 175 (257)
.+++.+.++||+|++....++.. .+..++....+.|||||.++
T Consensus 94 ~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 94 EEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 99988889999999876666553 35677877889999999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.58 E-value=7.9e-15 Score=109.82 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=92.3
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...++..+.+.++.+|||||||+|+.+..+++.. +.+|+++|.++.+++.++++++..+. .|+.++++|..+...
T Consensus 67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~---~nv~~~~gd~~~g~~ 141 (215)
T d1jg1a_ 67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV---KNVHVILGDGSKGFP 141 (215)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCCG
T ss_pred HHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC---ceeEEEECccccCCc
Confidence 3456677889999999999999999999998875 46799999999999999999877653 699999999987555
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..++||.|++...+..+++ .+.+.|+|||++++.
T Consensus 142 ~~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred ccCcceeEEeecccccCCH------HHHHhcCCCCEEEEE
Confidence 5788999999998887764 356679999999764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.55 E-value=8e-15 Score=110.62 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=88.6
Q ss_pred HHHhhh--CCCCCCeEEEecCCCChhHHHHHHHhCC-----CceEEEEeCChhHHHHHHhhhhhhhh--ccCCCeeEEEc
Q 025144 60 MAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGS-----QGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEG 130 (257)
Q Consensus 60 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 130 (257)
.++..+ .+.++.+|||||||+|+.+..+++..++ ..+|+++|.++++++.+++++..... ....++.+..+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 344444 6788999999999999999999887532 34899999999999999988654321 12368999999
Q ss_pred cCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 131 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 131 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|..+...+.++||.|++...+..+++ .+.+.|||||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence 99876556678999999999887764 467899999999764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=4.3e-14 Score=103.95 Aligned_cols=120 Identities=21% Similarity=0.336 Sum_probs=99.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+.+.++.++.+.++..+||++||+|..+..+++.+ |+.+++++|.+++|++.++++++..+ .++.++++++.++.
T Consensus 11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~----~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREAD 85 (192)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHH
T ss_pred HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc----ccccchhHHHhhHH
Confidence 44556777888999999999999999999999996 67899999999999999999987654 68999999987642
Q ss_pred -----CCCCcccEEEecccccC---------cccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -----FSDCFFDAITMGYGLRN---------VVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -----~~~~~~D~v~~~~~l~~---------~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+..+++|.|+....+.. +......|....++|+|||.+++..+..
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 44578999998766532 2346788999999999999999887664
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=6e-14 Score=114.16 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=88.9
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh------ccCCCeeE-E
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------ACYKNIEW-V 128 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~~-~ 128 (257)
.+...++..+++.++.+|||||||+|..+..++..+ +..+++|+|+|+.+++.|+++.+.... .......+ .
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 345556777889999999999999999999999886 345899999999999999988764321 00112222 3
Q ss_pred EccCCCCCC---CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 129 EGDALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 129 ~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.++....+. .-..+|+|+++. +++.+++...|.++.+.|||||.++..+
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 444443221 113478888754 5567889999999999999999997755
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=7.5e-13 Score=102.07 Aligned_cols=104 Identities=22% Similarity=0.312 Sum_probs=84.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.++++++..+.. .++.++++|..++.. .+.||.|+
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~--~~v~~~~~D~~~~~~-~~~~D~Ii 179 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVE--DRMSAYNMDNRDFPG-ENIADRIL 179 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCTTTCCC-CSCEEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCC--ceEEEEEcchHHhcc-CCCCCEEE
Confidence 357889999999999999999987 3469999999999999999998766543 579999999988754 57899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+...- ....++....+.|++||.+.+.+.
T Consensus 180 ~~~p~----~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 180 MGYVV----RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp ECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCC----chHHHHHHHHhhcCCCCEEEEEec
Confidence 86432 234567778889999999866543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.2e-12 Score=96.82 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=66.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------CCCCcc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCFF 142 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 142 (257)
+..++||+|||+|..+..++.+. ++.+++|+|+|+++++.|+++++..+.. .++.+.+.+..... ..+++|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~--~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS--DLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCC--cceeeeeeccHHhhhhhhhhcccCce
Confidence 34589999999999999999886 6889999999999999999998776544 67888876654421 235689
Q ss_pred cEEEecccccCcc
Q 025144 143 DAITMGYGLRNVV 155 (257)
Q Consensus 143 D~v~~~~~l~~~~ 155 (257)
|+|+|+..+....
T Consensus 138 D~ivsNPPY~~~~ 150 (250)
T d2h00a1 138 DFCMCNPPFFANQ 150 (250)
T ss_dssp SEEEECCCCC---
T ss_pred eEEEecCcccccc
Confidence 9999998877543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=9.9e-13 Score=104.52 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=84.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D 143 (257)
.++.+|||++||+|.++..++.. ..+|+++|.|+.+++.++++++..+. .++.++++|..++ ....++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHHHhhhhHhhhcCCC
Confidence 46789999999999999988754 56999999999999999999876653 5799999998763 23457899
Q ss_pred EEEecccccCc---------ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 144 AITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 144 ~v~~~~~l~~~---------~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+|++....... .+...++..+.++|+|||.|++...+
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99986543222 12356788999999999999876544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=3e-12 Score=98.74 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc
Q 025144 52 GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131 (257)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 131 (257)
...+.+.+.+.......+..+|+|+|||+|..+..+++. +..+|+++|+|+.+++.|+++.+..+.. .++.+..+|
T Consensus 93 peTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~--~~~~i~~~~ 168 (271)
T d1nv8a_ 93 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVS--DRFFVRKGE 168 (271)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCT--TSEEEEESS
T ss_pred hhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCC--ceeEEeecc
Confidence 346666666666555555669999999999999998865 6889999999999999999998765543 567888888
Q ss_pred CCCCC-CCCCcccEEEecccccCcc---------cH----------HHHHHH-HHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 132 ALDLP-FSDCFFDAITMGYGLRNVV---------DK----------RKALEE-SFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 132 ~~~~~-~~~~~~D~v~~~~~l~~~~---------~~----------~~~l~~-~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
..+.. ...++||+|+++-..-.-. +| ..++++ +.+.|+|||.+++ ++..
T Consensus 169 ~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~-Eig~--------- 238 (271)
T d1nv8a_ 169 FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGE--------- 238 (271)
T ss_dssp TTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCT---------
T ss_pred cccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE-EECH---------
Confidence 87642 2236899999975421100 11 122222 4567899998754 3322
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...+.+.+++++.|| +....|..++++++|
T Consensus 239 --------------------------------~Q~~~v~~l~~~~g~-----~kDl~g~~R~~~~~k 268 (271)
T d1nv8a_ 239 --------------------------------DQVEELKKIVSDTVF-----LKDSAGKYRFLLLNR 268 (271)
T ss_dssp --------------------------------TCHHHHTTTSTTCEE-----EECTTSSEEEEEEEC
T ss_pred --------------------------------HHHHHHHHHHHhCCE-----EeccCCCcEEEEEEE
Confidence 133566677777777 234477788888776
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=2.1e-12 Score=102.97 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++..+..+... ..++.+|||++||+|.++..++.. + ..+|+++|+|+.+++.++++++..+.. .++.++++|+.
T Consensus 132 qr~~r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~~al~~a~~N~~~ngl~--~~~~~~~~d~~ 205 (324)
T d2as0a2 132 QRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVE--DRMKFIVGSAF 205 (324)
T ss_dssp THHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHH
T ss_pred hhhHHHHHHhh--cCCCCeeecccCcccchhhhhhhc-C-CcEEEeecCCHHHHHHHHHHHHHcCCC--ccceeeechhh
Confidence 34444444433 356889999999999999998876 2 348999999999999999998776543 57899999987
Q ss_pred CC----CCCCCcccEEEecccccCcc---------cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 134 DL----PFSDCFFDAITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 134 ~~----~~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+. ....++||+|++........ +...++..+.++|+|||.|++...+
T Consensus 206 ~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 206 EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 53 23457899999865533221 2455788889999999999877644
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=8.6e-13 Score=98.87 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-----CCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-----FSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~ 139 (257)
...++.+|||+|||+|..+..+++.++++.+++++|.++++.+.++++++..+.. .+++++.+|..+. + ...
T Consensus 53 ~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~--~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 53 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ--DKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHHHGGGHHHHSCC
T ss_pred HhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC--ccceeeeccccccccchhhcccc
Confidence 3345569999999999999999988766789999999999999999998776654 6799999998763 1 334
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
++||+|++.+.-. .......+.+..+.|+|||++++-+..++..
T Consensus 131 ~~~D~ifiD~~~~-~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~ 174 (214)
T d2cl5a1 131 DTLDMVFLDHWKD-RYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 174 (214)
T ss_dssp CCEEEEEECSCGG-GHHHHHHHHHHTTCEEEEEEEEESCCCCCCC
T ss_pred cccceeeeccccc-ccccHHHHHHHhCccCCCcEEEEeCcCCCCC
Confidence 6799999864211 1112334677788999999987766555543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.32 E-value=1.6e-12 Score=92.26 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
-.+.+|||+|||+|.++...+.+ +. .+|+++|.++.+++.++++++..+.. .+++++++|.... ....++||+|+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r-ga-~~v~~ve~~~~a~~~~~~n~~~~~~~--~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAE--NRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCG--GGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHh-Cc-ceeeeehhchhhhhhhhhhhhhcccc--cchhhhcccccccccccccccceeE
Confidence 36889999999999999988776 33 49999999999999999998766543 5799999998763 34467899999
Q ss_pred ecccccCcccHHHHHHHHH--hcccCCCEEEEEe
Q 025144 147 MGYGLRNVVDKRKALEESF--RVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~ 178 (257)
+..... .......+..+. +.|+|+|.+++-.
T Consensus 89 ~DPPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 89 LDPPYA-KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echhhc-cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 865432 223345555554 5799999987643
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.9e-12 Score=95.37 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=93.2
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--- 135 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--- 135 (257)
+.+..+......++|||||||+|..+..+++.++.+.+++.+|.+++..+.|++.++..+.. .+++++.+|..+.
T Consensus 49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~--~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE--HKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHH
T ss_pred HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc--ceEEEEEeehhhcchh
Confidence 33334444455679999999999999999998766789999999999999999999876654 6899999997652
Q ss_pred ---CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
....++||+|+..+. -......++.+.+.|+|||.+++-+..+
T Consensus 127 ~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp HHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred hhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 123578999998653 3455677888999999999998866543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=5.7e-12 Score=91.09 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=73.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCcc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFF 142 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~ 142 (257)
...+.+|||+|||+|.++...+.+ +++++++|.|+.+++.++++++..+. ..++...+.... ....++|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~----~~~v~~~~~d~~~~~~~~~~~~f 111 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGL----GARVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTC----CCEEECSCHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcc----ccceeeeehhcccccccccCCcc
Confidence 456789999999999999988776 57899999999999999999876653 234444444321 2345789
Q ss_pred cEEEecccccCcccHHHHHHHH--HhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~--~~~Lk~gG~l~~~~ 178 (257)
|+|++...++. +....+..+ ..+|+|||.+++..
T Consensus 112 D~If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 112 TVAFMAPPYAM--DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ceeEEcccccc--CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 99999765442 222333333 35789999886543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=8.1e-11 Score=87.13 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=65.8
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
...-.+.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++++..+ .+..++..|...+ +++||+
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~~~d~~~~---~~~fD~ 112 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEF---NSRVDI 112 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGC---CCCCSE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcC----CCceEEECchhhh---CCcCcE
Confidence 34446789999999999999888765 2 3589999999999999999987654 5788999998775 467999
Q ss_pred EEecccccCc
Q 025144 145 ITMGYGLRNV 154 (257)
Q Consensus 145 v~~~~~l~~~ 154 (257)
|+++..+...
T Consensus 113 Vi~nPP~~~~ 122 (201)
T d1wy7a1 113 VIMNPPFGSQ 122 (201)
T ss_dssp EEECCCCSSS
T ss_pred EEEcCccccc
Confidence 9998776543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=2e-11 Score=89.53 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=61.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..-.+.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|+++. .++.++++|+.++ +++||+|
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~--------~~~~~~~~D~~~l---~~~fD~V 111 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEI---SGKYDTW 111 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGC---CCCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHcc--------ccccEEEEehhhc---CCcceEE
Confidence 3345789999999999998877765 2 348999999999999999886 5789999999876 4789999
Q ss_pred Eeccccc
Q 025144 146 TMGYGLR 152 (257)
Q Consensus 146 ~~~~~l~ 152 (257)
+++-.+.
T Consensus 112 i~NPPfg 118 (197)
T d1ne2a_ 112 IMNPPFG 118 (197)
T ss_dssp EECCCC-
T ss_pred EeCcccc
Confidence 9987654
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.21 E-value=1.1e-10 Score=85.80 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCCChhH----HHHHHHhC---CCceEEEEeCChhHHHHHHhhhhhh------------------hh---
Q 025144 68 KTGDNVLDVCCGSGDLS----FLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDLV------------------SK--- 119 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~----~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~------------------~~--- 119 (257)
.+..+|+++|||+|.-. ..+.+... ...+++++|+|+.+++.|++..-.. ..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 44569999999999843 33443321 2347999999999999998532100 00
Q ss_pred -------ccCCCeeEEEccCCCCC-CCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEE
Q 025144 120 -------ACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 120 -------~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.....+.+...+..... .+.+.||+|+|.++|.++++ ..++++++++.|+|||.|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00012344555554432 34578999999999999975 478899999999999998764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.20 E-value=3.3e-11 Score=95.35 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCcc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFF 142 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~ 142 (257)
..++.+|||++||+|.++..++.. ...+|+++|.|+.+++.++++++..+.. ..++.++++|+.+. ....++|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~-~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhccc-CcceEEEEccHHHHHHHHHhhcCCC
Confidence 456889999999999999887754 2348999999999999999998765432 14789999999753 1235689
Q ss_pred cEEEeccccc---------CcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 143 DAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 143 D~v~~~~~l~---------~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|+|++...-. ...+...+++.+.++|+|||.|++...+
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999864421 1123567889999999999999876643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.19 E-value=3.7e-11 Score=93.95 Aligned_cols=124 Identities=19% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 54 HRIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 54 ~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
++..++++...+ ...++.+|||++||+|.++..++.. +++|+++|.|+.+++.|+++++..+.. ..++++++.|+
T Consensus 116 qr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~-~~~~~~i~~D~ 191 (309)
T d2igta1 116 QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDA 191 (309)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECSCH
T ss_pred hhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhccc-CCcEEEEeCCH
Confidence 444455444433 3456789999999999999988865 579999999999999999998654432 13689999999
Q ss_pred CCCC----CCCCcccEEEeccccc---------Cc-ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 133 LDLP----FSDCFFDAITMGYGLR---------NV-VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 133 ~~~~----~~~~~~D~v~~~~~l~---------~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+.- ...+.||+|++...-. .+ .+...++..+.++|+|||.+++.+.+.
T Consensus 192 ~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred HHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 7641 2357899999853311 11 134556778889999999876665443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.17 E-value=2.4e-11 Score=91.40 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=88.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C------CCCC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P------FSDC 140 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~ 140 (257)
....+|||+|+++|..+..+++.++++++++.+|.+++..+.|++.++..+.. .++.++.++..+. + ...+
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~--~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD--HKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc--cceeeeehHHHHHHHHHHhccccCC
Confidence 35669999999999999999998876789999999999999999999876654 6899999999753 1 1246
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+||+|+... .-......++.+.+.|+|||.+++-+..
T Consensus 136 ~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 136 SYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp CBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred ceeEEEecc---chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 899999864 2345678888999999999999876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.11 E-value=1.9e-10 Score=83.73 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=88.0
Q ss_pred HHHHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...++.+..++. ...+.+|||++||+|.++...+.+ + -.+|+++|.++.+++.++++++..+.. .++.+++.|+.
T Consensus 26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-G-a~~v~~ve~~~~a~~~~~~N~~~~~~~--~~~~i~~~D~~ 101 (182)
T d2fhpa1 26 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEP--EKFEVRKMDAN 101 (182)
T ss_dssp HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccccccceeeec-c-hhHHHHHHHHHHHHHHHHHHhhhhhcc--cccccccccch
Confidence 344555555553 346889999999999999998887 2 238999999999999999998765533 57999999987
Q ss_pred CC----CCCCCcccEEEecccccCcccHHHHHHHHHh--cccCCCEEEEE
Q 025144 134 DL----PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVL 177 (257)
Q Consensus 134 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~ 177 (257)
.. .....+||+|++..... ..+....+..+.+ .|+++|.+++-
T Consensus 102 ~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 102 RALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 53 12346799999877643 3345667777754 68999988653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.8e-10 Score=84.01 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~ 147 (257)
.+.+|||++||+|.++...+.+ + -.+|+.+|.++.+++.++++++.... .+..++..|+.+. .....+||+|++
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-G-a~~v~~VE~~~~a~~~~k~N~~~~~~---~~~~ii~~d~~~~l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-Y-AAGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMSFLAQKGTPHNIVFV 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred chhhhhhhhccccceeeeEEec-C-cceeEEEEEeechhhHHHHHHhhccc---cceeeeeecccccccccccccCEEEE
Confidence 5679999999999999998877 2 24899999999999999999876443 5789999997753 334678999999
Q ss_pred cccccCcccHHHHHHHHHh--cccCCCEEEEE
Q 025144 148 GYGLRNVVDKRKALEESFR--VLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~ 177 (257)
...... ......+..+.+ +|+++|.+++-
T Consensus 118 DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 118 DPPFRR-GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp CCSSST-TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cCcccc-chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 876442 344566666654 68999988764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.07 E-value=6e-10 Score=86.30 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=81.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-------hccCCCeeEEEccCCCCCCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-------KACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+.+.+||.||+|.|..+..+++. +..+++++|+++++++.+++.+.... ....++++++.+|....--.+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 345569999999999999998865 44689999999999999997653211 112368999999987643235
Q ss_pred CcccEEEecccccCccc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 140 CFFDAITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++||+|++...-..-+. -..+++.+++.|+|||.+++..
T Consensus 148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 78999997543221111 2578999999999999997654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=1.8e-09 Score=83.89 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=81.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-hccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
...+||-||+|.|..+..+++. .+..+++++|+++++++.+++.+.... .-..++++++.+|.... .-.+++||+|+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4569999999999999999876 356789999999999999998764322 11237899999999764 23357899999
Q ss_pred ecccccCc-c----cHHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNV-V----DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~-~----~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+...-... + --..+++.+++.|+|||.+++..
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 75432211 1 13678999999999999997654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=8.5e-10 Score=86.81 Aligned_cols=110 Identities=14% Similarity=0.022 Sum_probs=82.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh--hccCCCeeEEEccCCCCC-CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--KACYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
+...+||.||+|.|..+..+++. .+..+++++|+++++++.+++.+.... ....++++++.+|....- ..+++||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 34569999999999999999876 456799999999999999998874321 112368999999998742 23568999
Q ss_pred EEecccccCc----c-c--HHHHHHHHHhcccCCCEEEEEe
Q 025144 145 ITMGYGLRNV----V-D--KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~----~-~--~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|++...-... . . -..+++.+++.|+|||++++..
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9965421111 1 1 2578999999999999987653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.04 E-value=8.6e-10 Score=83.26 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
....+.+...+.+.++.+|||||||+|.++..|++. ..+++++|+++.+++.++++.... +++.++++|+.+
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~-----~n~~i~~~D~l~ 78 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDILQ 78 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGGG
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcc-----cchhhhhhhhhh
Confidence 334566777778889999999999999999999987 468999999999999999877543 689999999999
Q ss_pred CCCCCCcccEEEeccc
Q 025144 135 LPFSDCFFDAITMGYG 150 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~ 150 (257)
++++......|+.+..
T Consensus 79 ~~~~~~~~~~vv~NLP 94 (235)
T d1qama_ 79 FKFPKNQSYKIFGNIP 94 (235)
T ss_dssp CCCCSSCCCEEEEECC
T ss_pred ccccccccceeeeeeh
Confidence 8765544444554443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.03 E-value=1.5e-09 Score=86.52 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=87.5
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC----CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
+...+..+....++.+|||.|||+|.++..+.+++. ...+++|+|+++.++..|+.+..... .+..+.+.|.
T Consensus 105 m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~----~~~~~~~~d~ 180 (328)
T d2f8la1 105 VAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----QKMTLLHQDG 180 (328)
T ss_dssp HHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCT
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh----hhhhhhcccc
Confidence 334444555677778999999999999988876542 23479999999999999988765443 4667777776
Q ss_pred CCCCCCCCcccEEEecccccCccc------------------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 133 LDLPFSDCFFDAITMGYGLRNVVD------------------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~~~------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.... +.++||+|+++..+..... ...++.++.+.|+|||.+.++.+.
T Consensus 181 ~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 181 LANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp TSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred cccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 6533 4578999999877643221 233688999999999998776543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.02 E-value=3.2e-09 Score=81.92 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=83.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
+...+||-||.|.|..+..+++. .+..+++++|+++++++.+++.+... +....++++++.+|.... ...+++||+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 34569999999999999999876 35579999999999999999976432 112237899999998763 2335789999
Q ss_pred EecccccCcc--c--HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV--D--KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~--~--~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++...-..-. . -..+++.+++.|+|||.++...
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 9754321111 1 3678999999999999997654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.6e-09 Score=81.95 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=82.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCC-CCCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDL-PFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-~~~~~~~D~ 144 (257)
.+...+||-||.|.|..+..+.+. .+..+++++|+++++++.+++.+... +....++++++.+|.... ....++||+
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 345579999999999999999876 35679999999999999999877432 112237999999998763 233578999
Q ss_pred EEecccccCc-c-c--HHHHHHHHHhcccCCCEEEEEeec
Q 025144 145 ITMGYGLRNV-V-D--KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 145 v~~~~~l~~~-~-~--~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|++...-..- + . -..+++.+++.|+|||.+++...+
T Consensus 155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 9975421111 1 1 245799999999999999776533
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=5.3e-09 Score=82.34 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=96.2
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.-.......+...++.+|||++||.|.=+..+++..+....++++|.++.-+...+++++..+. .++.+...|....
T Consensus 103 ~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---~~i~~~~~d~~~~ 179 (313)
T d1ixka_ 103 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHI 179 (313)
T ss_dssp HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGG
T ss_pred ccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---hcccccccccccc
Confidence 3344555667888999999999999999999998877778999999999999999988877654 5788888887766
Q ss_pred CCCCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 136 PFSDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
+..++.||.|++... +..-++ ..++|.+..+.|||||.++..+.+....
T Consensus 180 ~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e 250 (313)
T d1ixka_ 180 GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE 250 (313)
T ss_dssp GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred ccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence 555678999997332 211111 2556889999999999998887665443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=7.5e-09 Score=76.22 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
-++.+|+|+|+|.|..+..++-. .|+.+++.+|.+..-+...++.....+. .++.+++..+++... ..+||+|++
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~~~~-~~~fD~V~s 138 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEFPS-EPPFDGVIS 138 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTSCC-CSCEEEEEC
T ss_pred hcCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCC---cceeeeccchhhhcc-ccccceehh
Confidence 34569999999999999999876 4889999999999988888887766553 589999999998653 467999987
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+ .+...+++-+...++++|.+++.-
T Consensus 139 RA~----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 139 RAF----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SCS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 553 457888999999999999997764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.96 E-value=1.1e-08 Score=79.36 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=83.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-hccCCCeeEEEccCCCCC--CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDLP--FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~~--~~~~~~D~ 144 (257)
+...+||-||.|.|..+..+++. .+..+++++|+++++++.+++.+.... ....++++++.+|....- ..+++||+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 44569999999999999999886 355689999999999999998764321 112378999999987532 34568999
Q ss_pred EEecccccCcc--c--HHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVV--D--KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~--~--~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|++...-..-. . -..+++.+++.|+|||.+++...
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99754321111 1 26789999999999999987643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.95 E-value=3.6e-09 Score=82.54 Aligned_cols=110 Identities=16% Similarity=0.053 Sum_probs=80.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-hccCCCeeEEEccCCCCC-CCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDLP-FSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~~D~v 145 (257)
+...+||-||.|.|..+..+++. .+..+++++|+++++++.+++.+.... .-..++++++.+|....- ...++||+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 34569999999999999999876 355699999999999999998764321 122378999999987642 235789999
Q ss_pred EecccccCcc----cHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV----DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++...-..-+ --..+++.+++.|+|||.++...
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 9754321111 12567999999999999997764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.95 E-value=1.3e-10 Score=88.27 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=72.0
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...+...++.+|||||||+|.++..|++. ..+++++|+++.+++.+++++... +++.++++|+.++++
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~~-----~n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKLN-----TRVTLIHQDILQFQF 89 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTTC-----SEEEECCSCCTTTTC
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhhc-----cchhhhhhhhhcccc
Confidence 455667778888999999999999999999987 468999999999998888776432 689999999999888
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
+....+.|+.+...+
T Consensus 90 ~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 90 PNKQRYKIVGNIPYH 104 (245)
T ss_dssp CCSSEEEEEEECCSS
T ss_pred ccceeeeEeeeeehh
Confidence 777777777666543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=2.3e-09 Score=77.45 Aligned_cols=113 Identities=24% Similarity=0.346 Sum_probs=89.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 136 (257)
+.++..+.+.++..++|..+|.|..+..+++. +.+|+++|.++.+++.+++... +++.+++.++.++.
T Consensus 8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~~-------~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 8 QEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHL-------PGLTVVQGNFRHLKRH 77 (182)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTCC-------TTEEEEESCGGGHHHH
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhccc-------cceeEeehHHHHHHHH
Confidence 44556677889999999999999999999886 4699999999999999887532 68999999988753
Q ss_pred ---CCCCcccEEEecccccCc---------ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 ---FSDCFFDAITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~---------~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
...+.+|.|++...+... ......|....+.|++||.+++..++.
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 345779999986655433 124557888899999999999888653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=1.1e-07 Score=71.27 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhhh------CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCee
Q 025144 53 QHRIWKRMAVSWS------GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE 126 (257)
Q Consensus 53 ~~~~~~~~~~~~~------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 126 (257)
..+.|.+.+..-+ ......+|+|||+|.|..+..++=.+ |+.+++.+|.+..-+...+......+. .++.
T Consensus 48 ~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~ 123 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL---ENTT 123 (239)
T ss_dssp HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC---SSEE
T ss_pred HHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC---CCcE
Confidence 3555665555422 22346799999999999999998764 788999999999888887776665554 5889
Q ss_pred EEEccCCCCCC---CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 127 WVEGDALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 127 ~~~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++..++++.. ..+.||+|++.. +..+..++.-+...+++||.+++.-
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~sRA----va~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEeehhhhccccccccccceEEEEhh----hhCHHHHHHHHhhhcccCCEEEEEC
Confidence 99988876431 136799999864 3467889999999999999987764
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.84 E-value=9.3e-09 Score=77.10 Aligned_cols=111 Identities=23% Similarity=0.266 Sum_probs=81.9
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
..+.+..++...++.+|||.|||+|.++..+.+.......++++|+++..+..+ ....++++|.....
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------~~~~~~~~~~~~~~ 74 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADFLLWE 74 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCGGGCC
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------ccceeeeeehhccc
Confidence 456677777788889999999999999999888765567899999998654322 34567777776644
Q ss_pred CCCCcccEEEecccccCcc----------------------------c-HHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 FSDCFFDAITMGYGLRNVV----------------------------D-KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~----------------------------~-~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
....||+|+++..+.... + ...++.+..+.|++||.+.++.+.
T Consensus 75 -~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 75 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 347799999876654321 0 134577888999999998777643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.1e-07 Score=74.72 Aligned_cols=114 Identities=17% Similarity=0.309 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+..++...++.+|||+-||+|.++..|++. ..+|+++|.++.+++.|+++.+..+. .|+.++.+|..
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i---~n~~~~~~~~~ 270 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLE 270 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTT
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccc---ccceeeecchh
Confidence 4556666777788888899999999999999999865 46999999999999999998765543 68999999987
Q ss_pred CCC----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 134 DLP----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 134 ~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+.. ....++|+|++.-.=.- ....+..+.+. +|.-.+++.
T Consensus 271 ~~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 271 EDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp SCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEE
T ss_pred hhhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEe
Confidence 632 22467999987543222 23456666553 565555554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.73 E-value=1.8e-08 Score=73.13 Aligned_cols=105 Identities=22% Similarity=0.234 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v 145 (257)
.+.+|||+.||||.++...+.+ + -.+++.+|.+...+...+++++..+.. .....+...|..+. .....+||+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-G-A~~v~fVE~~~~a~~~ik~Ni~~l~~~-~~~~~~~~~d~~~~l~~~~~~~~fDlI 119 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-Q-AKKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSSLDFLKQPQNQPHFDVV 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred ccceEeecccCccceeeeeeee-c-ceeeEEeecccchhhhHhhHHhhhccc-ccccccccccccccccccccCCcccEE
Confidence 5679999999999999999987 3 349999999999999999998765432 12456666665432 2334579999
Q ss_pred EecccccCcccHHHHHHHHHh--cccCCCEEEEE
Q 025144 146 TMGYGLRNVVDKRKALEESFR--VLKPGSRISVL 177 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~ 177 (257)
++...... ......+..+.+ +|+++|.+++-
T Consensus 120 FlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 120 FLDPPFHF-NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp EECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 99777543 335566666654 78999988664
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.2e-07 Score=73.49 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++.-.......+...++.+|||+++|.|.-+..+++.. .+..++++|.++.-+...+++++..+. .++.+...|..
T Consensus 87 QD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~ 162 (284)
T d1sqga2 87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRY 162 (284)
T ss_dssp CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTC
T ss_pred ccccccccccccCccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccc
Confidence 34444555566788899999999999999999999874 557899999999999999999887663 34444444443
Q ss_pred CCC-CCCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 134 DLP-FSDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 134 ~~~-~~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
... ...+.||.|++... +..-++ ..++|.+..+.|||||.++..+.+.....
T Consensus 163 ~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 237 (284)
T d1sqga2 163 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE 237 (284)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGG
T ss_pred cchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhh
Confidence 221 23467999996332 222222 25568999999999999988887654433
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.9e-07 Score=71.62 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=91.8
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC--
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-- 138 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-- 138 (257)
....+...++.+|||+++|+|.-+.++++.+++...++++|+++.-++.++++++..+. .++.+...|...+...
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~---~~~~~~~~d~~~~~~~~~ 162 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP 162 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc---cceeeeehhhhhhccccc
Confidence 34456778899999999999999999998887778999999999999999999877654 5899999998765422
Q ss_pred -CCcccEEEecccccC------cc---------c---------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHH
Q 025144 139 -DCFFDAITMGYGLRN------VV---------D---------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW 193 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~------~~---------~---------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 193 (257)
.+.||.|++...... .+ + ...++.... .++|||.|+..+.+.........+...
T Consensus 163 ~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~ 241 (293)
T d2b9ea1 163 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDA 241 (293)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHH
T ss_pred ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHH
Confidence 256999997433111 01 0 122344444 478999988887765554444433333
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.67 E-value=2.6e-08 Score=74.62 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=69.1
Q ss_pred CCCeEEEecCCCChhHHHHHHH---hCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 141 (257)
++.+|||||++.|..+..+++. .++..+++++|+++......... .++++++++|..+.. +....
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~--------~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------MENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------CTTEEEEECCSSCSGGGGGGSSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc--------ccceeeeecccccHHHHHHHHhcC
Confidence 3569999999999887766543 35678999999977543222111 268999999987643 33456
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|+|+.... |........+ .+.+.|++||.+++-|.
T Consensus 152 ~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 152 HPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 898887544 5444333334 35689999999988663
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=2.7e-07 Score=66.39 Aligned_cols=101 Identities=24% Similarity=0.314 Sum_probs=77.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 138 (257)
..++.+|||+||++|.++..+.+..++...+.++|+.+- +. .+++.++++|+.+.. ..
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~--------i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DP--------IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CC--------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cc--------cCCceEeecccccchhhhhhhhhcc
Confidence 467889999999999999999988777789999998651 11 168899999998732 23
Q ss_pred CCcccEEEecccccCccc-----------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 DCFFDAITMGYGLRNVVD-----------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+++|+|++..+.....+ ....+.-+.+.|++||.+++=.+..
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 568999999776554321 2345777888999999998877664
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.9e-07 Score=71.64 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=70.0
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+.+.......++..|||||+|+|.++..|++. +.+++++|+++.+++..++.+...... .++.++.+|+...
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~--~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVA--SKLQVLVGDVLKT 82 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTG--GGEEEEESCTTTS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccc--cchhhhHHHHhhh
Confidence 34455666777888899999999999999999987 469999999999999999887543222 5899999999887
Q ss_pred CCCCCcccEEEecccc
Q 025144 136 PFSDCFFDAITMGYGL 151 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l 151 (257)
+.+ .++.|+.+...
T Consensus 83 ~~~--~~~~vV~NLPY 96 (278)
T d1zq9a1 83 DLP--FFDTCVANLPY 96 (278)
T ss_dssp CCC--CCSEEEEECCG
T ss_pred hhh--hhhhhhcchHH
Confidence 654 34666665443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.65 E-value=2e-07 Score=76.54 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC------------CceEEEEeCChhHHHHHHhhhhhhhhcc
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS------------QGKVIGLDFSKNQLSMASSRQDLVSKAC 121 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 121 (257)
.....+.+...+...++.+|+|.+||+|.+...+.+.+.. ...+.|+|+++.+...|+.+..-.+..
T Consensus 147 P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~- 225 (425)
T d2okca1 147 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG- 225 (425)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred chhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc-
Confidence 3456677778888888899999999999999888775421 125999999999999988775433221
Q ss_pred CCCeeEEEccCCCCCCCCCcccEEEecccccCcc-----------------cHHHHHHHHHhcccCCCEEEEEee
Q 025144 122 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV-----------------DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 122 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-----------------~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+..+...|..... +...||+|+++..+.... .-..++.++.+.|++||.+.++.+
T Consensus 226 ~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 226 TDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 135667778876633 457899999988774321 024589999999999999877754
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.2e-07 Score=71.92 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
..+.+...+...++..|||||||+|.++..|++. ..+++++|+++.+++..+++.... +++.++.+|+.+++
T Consensus 9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~-----~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhhc-----cchhHHhhhhhhhc
Confidence 4455677777888999999999999999999976 468999999999999998865432 58999999998865
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=3.2e-06 Score=71.05 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=84.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-----------------CceEEEEeCChhHHHHHHhhhhhh
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-----------------QGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
....+.+..++...++.+|+|.+||+|.+.....+.+.. ...++|+|+++.+...++.+.--.
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 455677778888888889999999999999877664311 125899999999998888765332
Q ss_pred hhc--cCCCeeEEEccCCCCC-CCCCcccEEEecccccCcc-------------c-HHHHHHHHHhcccCCCEEEEEee
Q 025144 118 SKA--CYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVV-------------D-KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 118 ~~~--~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~-------------~-~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+.. ......+...+....+ ....+||+|+++..+.... + -..++.++.+.|++||++.++.+
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 211 0012234444443321 2346799999987764221 1 23579999999999999887764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.09 E-value=3.9e-06 Score=67.09 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc------------cCCCeeEEEccCCCCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------CYKNIEWVEGDALDLP 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------~~~~~~~~~~d~~~~~ 136 (257)
.+.+|||..||+|..++..+... +..+|+.+|+|+..++.++++++..+.. ....+.+.+.|...+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 56799999999999999877764 3558999999999999999988654321 0123455566654321
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.||+|.+.. +..+..+|....+.++.||.|.+..
T Consensus 124 ~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 1245799998753 4466789999999999999997764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.06 E-value=2.1e-05 Score=58.26 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=68.7
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCC-eeEEEccCCCCCCCCCccc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN-IEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D 143 (257)
..+.+..+|+|+|||.|.++..++.+ .+...+.++++--...+. ........ .+ +.+...+.. ...+++..|
T Consensus 62 ~~~~~~~~vvDlG~~pGgws~~~a~~-~~v~~V~g~~iG~d~~e~-P~~~~~~~----~ni~~~~~~~dv-~~l~~~~~D 134 (257)
T d2p41a1 62 NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEE-PIPMSTYG----WNLVRLQSGVDV-FFIPPERCD 134 (257)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCC-CCCCCSTT----GGGEEEECSCCT-TTSCCCCCS
T ss_pred cCccCCCeEEEecCCCChHHHHHHhh-cCCCceeEEEecCccccC-Cccccccc----cccccchhhhhH-HhcCCCcCC
Confidence 35677789999999999999999876 244678888874321100 00000000 12 233222221 123467899
Q ss_pred EEEecccccCccc-------HHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 144 AITMGYGLRNVVD-------KRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 144 ~v~~~~~l~~~~~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
+|+|...-. -++ ..++|+-+.+.|+|||.+++-.+.........
T Consensus 135 ~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e 185 (257)
T d2p41a1 135 TLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIE 185 (257)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHH
T ss_pred EEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHH
Confidence 999976533 221 23567777889999999877665543333333
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.92 E-value=0.00019 Score=56.54 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=92.9
Q ss_pred CeEEEecCCCChhHH-------HHHH-H-------hCCCceEEEEeCChhHHHHHHhhhhhhhhccCCC--eeEEEccCC
Q 025144 71 DNVLDVCCGSGDLSF-------LLSE-Q-------VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN--IEWVEGDAL 133 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~-------~l~~-~-------~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~~ 133 (257)
-+|+|+||.+|..+. ...+ . -.|..+|...|+-..=-...=+.+...... .++ +..+.+.+-
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~-~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-DGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC-TTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC-CCCeEEEecCCchh
Confidence 579999999998873 2221 1 124557888886442222222222111100 012 334556666
Q ss_pred CCCCCCCcccEEEecccccCccc---------------------------------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 134 DLPFSDCFFDAITMGYGLRNVVD---------------------------------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.--+|+++.|++++..++||+.. ...+|+.=.+-|+|||.+++..+.
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 65588999999999999999731 245677778889999999888766
Q ss_pred CCCchhH----HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcC-ceeeEEe
Q 025144 181 KSTQPFT----TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHY 243 (257)
Q Consensus 181 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~ 243 (257)
+++.... ..+...+...+........-..+.+.... -...+.+.+|+++.+++.| |++.+..
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn-~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFN-IPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGC-CCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhcc-CccccCCHHHHHHHhccCCCeeeeeeE
Confidence 5442110 01111111111111111111111111100 0012459999999999988 6665544
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.75 E-value=5.2e-05 Score=56.66 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=64.4
Q ss_pred HHhhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc------cCCCeeEEEccC
Q 025144 61 AVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------CYKNIEWVEGDA 132 (257)
Q Consensus 61 ~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~d~ 132 (257)
+.+.++..++ .+|||+-||.|..+..++.. +.+|+++|-++.+....+..+...... ...+++++++|.
T Consensus 78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 3334444433 48999999999999999977 579999999998776666554332211 014789999997
Q ss_pred CCC-CCCCCcccEEEecccccCc
Q 025144 133 LDL-PFSDCFFDAITMGYGLRNV 154 (257)
Q Consensus 133 ~~~-~~~~~~~D~v~~~~~l~~~ 154 (257)
.++ .-..++||+|++..++.+-
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCccc
Confidence 653 2234679999998877544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.62 E-value=0.00036 Score=48.99 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred hhhCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
+..+..++.+||-+||| .|..+..+++.. +.+++++|.+++-++.+++.-. ... +..+.....
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga--------~~~-~~~~~~~~~~~~~~ 88 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGA--------DVT-LVVDPAKEEESSII 88 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTC--------SEE-EECCTTTSCHHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCC--------cEE-Eeccccccccchhh
Confidence 34567889999999998 477888888874 6799999999999988877531 222 222221110
Q ss_pred -----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
...+.+|+|+-.- .....+....+.++++|.+++.....
T Consensus 89 ~~~~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 89 ERIRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp HHHHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred hhhhcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEecCC
Confidence 1124589887432 22467788889999999998876443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=0.00018 Score=56.10 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.+.+|||||+|.|.++..|++..++ .+++++|.++...+..++.+.. .++.++++|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~------~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEG------SPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTT------SSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccC------CCcEEEeCchhhc
Confidence 4668999999999999999987422 4899999999999998877642 5799999998753
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.36 E-value=0.00073 Score=47.63 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=71.2
Q ss_pred HHhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---
Q 025144 61 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 136 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 136 (257)
+.+..++.++.+||=+|||. |..+..+++..+ ...++++|.++.-++.+++. .-..++..+-.+..
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~i 89 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL---------GATHVINSKTQDPVAAI 89 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH---------TCSEEEETTTSCHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc---------CCeEEEeCCCcCHHHHH
Confidence 44556788999999999985 567777777764 34788999999888888764 22334444333321
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+.++.+|+|+-.- .....++...+.++|+|.+++...
T Consensus 90 ~~~t~gg~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 90 KEITDGGVNFALEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp HHHTTSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHcCCCCcEEEEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 2346799988432 135677888999999999987653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.35 E-value=0.00053 Score=49.37 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=71.8
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
....+.++.+||-+|||. |..+..+++.. ...+|+++|.++.-++.+++.- -..++...-.++.
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~G---------a~~~~~~~~~~~~~~i~~ 88 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQG---------FEIADLSLDTPLHEQIAA 88 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTT---------CEEEETTSSSCHHHHHHH
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhcc---------ccEEEeCCCcCHHHHHHH
Confidence 345788999999999997 66777777764 3458999999999998887652 1122221111110
Q ss_pred -CCCCcccEEEeccccc------C---cccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 -FSDCFFDAITMGYGLR------N---VVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~------~---~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+++-.-... + .......++.+.+.++|+|.+.+.-..
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 1234689988432211 1 122457899999999999999887543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=0.00036 Score=48.99 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=66.6
Q ss_pred hhCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCC-CCCCC
Q 025144 64 WSGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL-PFSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~-~~~~~ 140 (257)
..+..++.+||-+|+| .|..+..+++.. +.+++++|.+++.++.+++.- --.++.. +..+. ....+
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~lG---------a~~~i~~~~~~~~~~~~~~ 90 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKMG---------ADHYIATLEEGDWGEKYFD 90 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHT---------CSEEEEGGGTSCHHHHSCS
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhccC---------CcEEeeccchHHHHHhhhc
Confidence 3578899999999998 578888888875 679999999999888887641 1122222 11111 11235
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|.++..-.-..-. .+....+.++|+|.+++...
T Consensus 91 ~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 91 TFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEECCC
T ss_pred ccceEEEEecCCccc----hHHHHHHHhhccceEEEecc
Confidence 699888542221111 13457888999999987654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.33 E-value=0.00052 Score=48.44 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=69.7
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
+..++.++.+||=+|||. |..+..+++..+. .+|+++|.+++-++.+++. .-..++...-.+..
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~l---------Ga~~~i~~~~~~~~~~v~~ 90 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFY---------GATDILNYKNGHIEDQVMK 90 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHH---------TCSEEECGGGSCHHHHHHH
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhh---------CccccccccchhHHHHHHH
Confidence 446788999999999986 8888888887532 3799999999888888754 12223322222211
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.....+|+|+-.-. -...++...+.++|+|.+++.....
T Consensus 91 ~t~g~G~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 91 LTNGKGVDRVIMAGG------GSETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp HTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred HhhccCcceEEEccC------CHHHHHHHHHHHhcCCEEEEEeecC
Confidence 22345999875332 1345677788999999998865443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=0.0008 Score=47.76 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=68.4
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
+.....++.+||-+|+|. |..+..+++.+ +. +|+++|.+++-++.+++.- --.++...-.+.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEEIG---------ADLTLNRRETSVEERRK 90 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccc--cccccccccccccccccccccc---------ceEEEeccccchHHHHH
Confidence 444667899999999984 78888888885 44 8999999999998887642 112222221111
Q ss_pred ---C-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 ---P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ---~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
. .....+|+|+-.-. -...++...+.+++||++++.....
T Consensus 91 ~i~~~~~~~g~Dvvid~vG------~~~~~~~a~~~l~~~G~iv~~G~~~ 134 (182)
T d1vj0a2 91 AIMDITHGRGADFILEATG------DSRALLEGSELLRRGGFYSVAGVAV 134 (182)
T ss_dssp HHHHHTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCCCS
T ss_pred HHHHhhCCCCceEEeecCC------chhHHHHHHHHhcCCCEEEEEeecC
Confidence 0 12345999884321 1345677889999999998765443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.18 E-value=0.00091 Score=46.65 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=65.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F 137 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 137 (257)
..+..++.+||=+|+|. |..+..+++.. +.+++++|.+++-++.+++.- -..++..+-.+.. .
T Consensus 22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~G---------a~~~i~~~~~~~~~~~~~~ 90 (166)
T d1llua2 22 QTNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLG---------ASLTVNARQEDPVEAIQRD 90 (166)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHHH
T ss_pred HhCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccC---------ccccccccchhHHHHHHHh
Confidence 45678899999999985 77788888875 579999999998888887642 2233333322210 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+..|.|.+... ...+....+.|+++|++++.-.
T Consensus 91 ~~g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 91 IGGAHGVLVTAVS-------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp HSSEEEEEECCSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred hcCCccccccccc-------chHHHHHHHHhcCCcEEEEEEe
Confidence 1233444443221 3567888899999999987653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.0017 Score=45.44 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=68.8
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------ 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------ 136 (257)
..++.++.+||=+|+|. |..+..+++..+ ..+|+++|.++.-++.+++.- --.++..+-.+..
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~G---------a~~~~~~~~~~~~~~~~~~ 90 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIG---------ADLVLQISKESPQEIARKV 90 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---------CSEEEECSSCCHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhC---------Ccccccccccccccccccc
Confidence 45678899999999986 667777777752 238999999999999887642 1122222222210
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.....+|+|+-.-. -...++...+.+++||.+++.....
T Consensus 91 ~~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 91 EGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp HHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred cccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEecCC
Confidence 01246899875332 2567888999999999998876543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.16 E-value=0.00011 Score=51.21 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=69.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
++.+|+=||+|. |..++..+..+ +++|+++|.+++.+++.+..+. .++.+...+-..+.-.-...|+|+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-------~~~~~~~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-------SRVELLYSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-------GGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-------ccceeehhhhhhHHHhhccCcEEEE
Confidence 467999999996 77777777775 7899999999999988877653 3455555444332211135899998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
.-.+.--.-|.-+-+++.+.+|||..++
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred eeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 6655444445555678889999998764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00086 Score=47.22 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=67.3
Q ss_pred HhhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---- 135 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---- 135 (257)
....++.++.+||-.|+ |.|..+..+++.. +.++++++.+++-.+.+++. + --.++...-.++
T Consensus 21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~----G-----a~~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 21 IHSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQN----G-----AHEVFNHREVNYIDKI 89 (174)
T ss_dssp HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CSEEEETTSTTHHHHH
T ss_pred HHHhCCCCCCEEEEEecccccccccccccccc--Cccccccccccccccccccc----C-----cccccccccccHHHHh
Confidence 34456788999999996 3577888888884 68999999888777777653 1 122332221221
Q ss_pred --CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+.+|+|+.... ...++...+.|+|+|.++..-
T Consensus 90 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred hhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence 023466999986432 346788889999999998753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0018 Score=45.14 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=66.7
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCC
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDC 140 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~ 140 (257)
+..+..++.+||=+|+|. |.++..+++.. +.+++++|.+++-++.+++.- .-.++...-.+. ....+
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lG---------ad~~i~~~~~~~~~~~~~ 92 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALG---------ADEVVNSRNADEMAAHLK 92 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHT---------CSEEEETTCHHHHHTTTT
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccC---------CcEEEECchhhHHHHhcC
Confidence 346788999999999985 78888888885 678889999998777776541 222332221111 12235
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+++-.-.- ...+....+.++++|.+++...
T Consensus 93 ~~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 93 SFDFILNTVAA------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CEEEEEECCSS------CCCHHHHHTTEEEEEEEEECCC
T ss_pred CCceeeeeeec------chhHHHHHHHHhcCCEEEEecc
Confidence 69998853321 1235567789999999987653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.08 E-value=0.0027 Score=44.61 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=71.1
Q ss_pred HhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.+..++.++.+||=+|||. |..+..+++..+ -..|+++|.+++-++.+++.- -..++...-.+..
T Consensus 21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~G---------a~~~i~~~~~~~~~~~~ 90 (174)
T d1e3ia2 21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALG---------ATDCLNPRELDKPVQDV 90 (174)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred HHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhC---------CCcccCCccchhhhhhh
Confidence 4456788999999999997 888888888863 237999999999888887652 2223322221110
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEeec
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 180 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~~ 180 (257)
...+.+|+++-.- .....+....+.+++| |.+++.-..
T Consensus 91 ~~~~~~~G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 91 ITELTAGGVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp HHHHHTSCBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred HhhhhcCCCcEEEEec------ccchHHHHHHHHhhcCCeEEEecCCC
Confidence 1235689997422 2356788899999996 999876543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.03 E-value=0.0032 Score=43.87 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=69.1
Q ss_pred hhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
+..++.++.+||=+|| | .|..+..+++.. ...+|+++|.+++-++.+++.- --.++..+-.+..
T Consensus 21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~G---------a~~~i~~~~~~~~~~~~ 90 (170)
T d1jvba2 21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAG---------ADYVINASMQDPLAEIR 90 (170)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred HHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcC---------CceeeccCCcCHHHHHH
Confidence 3457888999999997 3 466677777765 3468999999998888877641 1123333322211
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
...+.+|+|+-... -...++...+.++|+|.+++.-...
T Consensus 91 ~~~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~ 131 (170)
T d1jvba2 91 RITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFG 131 (170)
T ss_dssp HHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred HHhhcccchhhhcccc------cchHHHhhhhhcccCCEEEEecccc
Confidence 22456999885332 3556777889999999998775443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.85 E-value=0.0087 Score=41.67 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CCC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 139 (257)
...|+.+||-+|+|. |..+..+++..+ ...++++|.+++-++.+++.- ...++..+-.... ...
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~g---------a~~~i~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERLG---------ADHVVDARRDPVKQVMELTRG 98 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCHHHHHHHHTTT
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhcc---------cceeecCcccHHHHHHHhhCC
Confidence 467889999999986 566677777753 358899999998888777642 2233433322111 223
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+|+|+-.-. -...++...+.++++|++++.-..
T Consensus 99 ~g~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 99 RGVNVAMDFVG------SQATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp CCEEEEEESSC------CHHHHHHGGGGEEEEEEEEECCCS
T ss_pred CCceEEEEecC------cchHHHHHHHHHhCCCEEEEEeCc
Confidence 56998885332 245688899999999999876543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.76 E-value=0.019 Score=43.71 Aligned_cols=106 Identities=16% Similarity=0.001 Sum_probs=70.0
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------CCCCcc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FSDCFF 142 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~ 142 (257)
..|+.+|||.=.-...+ .. +++..++=+|. +++++.-++.+.+.+.....+...+..|+.+.. +..+.-
T Consensus 91 ~qvV~LGaGlDTr~~Rl-~~-~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p 167 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL-DW-PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 167 (297)
T ss_dssp CEEEEETCTTCCHHHHS-CC-CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CeEEEeCcccCChhhhc-CC-CcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence 46777999875443333 11 34557777775 778877777776544332246678888887521 223444
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEee
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
-++++-.++.+++ +...+++.+.+...||+.+++-..
T Consensus 168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5666777788885 578899999999999999866543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.70 E-value=0.0039 Score=43.25 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=63.4
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F 137 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 137 (257)
..+..++.+||=.|+|+ |.....+++. .+.+++++|.+++-++.+++.- -..++...-.+.. .
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~~~r~~~~k~~G---------a~~~~~~~~~~~~~~~~~~ 90 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKELG---------ADLVVNPLKEDAAKFMKEK 90 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTT---------CSEEECTTTSCHHHHHHHH
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhc--CCCeEeccCCCHHHhhhhhhcC---------cceecccccchhhhhcccc
Confidence 45688899999999986 5666666766 3678999999998888876641 1112221111110 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.++.+|+|+... -...+....+.++|+|.+++....
T Consensus 91 ~~~~~~~v~~~~-------~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 91 VGGVHAAVVTAV-------SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp HSSEEEEEESSC-------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred cCCCceEEeecC-------CHHHHHHHHHHhccCCceEecccc
Confidence 123344443321 246688899999999999886544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.62 E-value=0.001 Score=46.72 Aligned_cols=98 Identities=19% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE----------ccCCCCC-
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE----------GDALDLP- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~----------~d~~~~~- 136 (257)
++.+|+=||+|. |..+...+..+ ++.|+++|.++..+++.+..... .+.+.. +....+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~-------~i~~~~~~~~~~~~~~gyA~~~s~ 98 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGK-------FITVDDEAMKTAETAGGYAKEMGE 98 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCE-------ECCC--------------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcc-------eEEEeccccccccccccchhhcCH
Confidence 456999999997 66777777775 78999999999999988876432 111110 0111100
Q ss_pred -CC----------CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 137 -FS----------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 137 -~~----------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+. -...|+|+..-.+.--..|.-+-+++.+.+|||..++
T Consensus 99 ~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 99 EFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp ---CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 00 1248999986665544444555678889999998774
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.60 E-value=0.025 Score=39.37 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred HhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.+.....++.+||=+|||. |..+..+++..+ ..+|+++|.+++-++.+++.- -..++...-.+..
T Consensus 20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~lG---------a~~~i~~~~~d~~~~~~ 89 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIELG---------ATECLNPKDYDKPIYEV 89 (174)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHcC---------CcEEEcCCCchhHHHHH
Confidence 4456788999999999986 566677777753 358999999999999887652 2233332222210
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccC-CCEEEEEeecC
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKP-GSRISVLDFNK 181 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~-gG~l~~~~~~~ 181 (257)
..++.+|+|+-.-. ....+......+++ +|.+++.-...
T Consensus 90 ~~~~~~~G~d~vid~~g------~~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 90 ICEKTNGGVDYAVECAG------RIETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred HHHhcCCCCcEEEEcCC------CchHHHHHHHHHHHhcCceEEEEEec
Confidence 22356898875322 24455566666654 68888766543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.0074 Score=42.41 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=65.4
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
+..++.++.+||=.|+ |.|..+..+++.. +.++++++-+++-.+.+++.- --.++...-.++.
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~G---------a~~vi~~~~~~~~~~v~ 87 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRLG---------VEYVGDSRSVDFADEIL 87 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTTC---------CSEEEETTCSTHHHHHH
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccccc---------ccccccCCccCHHHHHH
Confidence 4456788899999874 3577888888885 678999888887777666431 1223332222211
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.....+|+|+.... ...++.+.+.|+++|+++..
T Consensus 88 ~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 23467999996443 24567788999999998775
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.016 Score=40.38 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=66.6
Q ss_pred hhhCCCCCCeEEEecCC--CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 63 SWSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
+..++.++.+||=.|+| .|..+..+++.. +.++++++.|++-.+.+++.- --.++..+-.++.
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~lG---------a~~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKAG---------AWQVINYREEDLVERLK 90 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhcC---------CeEEEECCCCCHHHHHH
Confidence 44567889999999766 467888888885 689999999999888877541 2233333222221
Q ss_pred --CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-... ...+......++++|.+++..
T Consensus 91 ~~t~g~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 91 EITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred HHhCCCCeEEEEeCcc-------HHHHHHHHHHHhcCCeeeecc
Confidence 13467898875432 124567888999999886644
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.96 E-value=0.037 Score=43.46 Aligned_cols=51 Identities=6% Similarity=-0.025 Sum_probs=38.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhC------CCceEEEEeCChhHHHHHHhhhh
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVG------SQGKVIGLDFSKNQLSMASSRQD 115 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~v~~~D~s~~~~~~a~~~~~ 115 (257)
++.++...|+|+|+|+|.++..+++.+. ...+++.+|.|+.+.+.-+++++
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 3445566899999999999998877652 13379999999987776666554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.89 E-value=0.056 Score=37.68 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHhhhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--
Q 025144 61 AVSWSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 136 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 136 (257)
+.+..++.++.+||=.|++. |..+..+++.. +.++++++-+++-.+.+++.- .-.++..+-.+..
T Consensus 21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~G---------a~~vi~~~~~~~~~~ 89 (182)
T d1v3va2 21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIG---------FDAAFNYKTVNSLEE 89 (182)
T ss_dssp HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCSCHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhh---------hhhhcccccccHHHH
Confidence 44556778999999888855 56778888884 689999999888777766542 2233333322221
Q ss_pred ----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+-.-. ...+....+.|+++|.+++.-
T Consensus 90 ~~~~~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 90 ALKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HHHHHCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred HHHHhhcCCCceeEEecC-------chhhhhhhhhccCCCeEEeec
Confidence 23456999874321 356789999999999998753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.81 E-value=0.015 Score=43.02 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=43.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 115 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 115 (257)
+.+.+++.. ..++..|||.=||+|..+....+. +...+|+|++++.++.|+++++
T Consensus 201 L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 201 LIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence 334444444 367789999999999988776654 6799999999999999999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.76 E-value=0.034 Score=38.33 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=55.3
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|+=||||. |. ++..|.+. +...+|+++|.+++.++.+++.- .+.....+..... ....|+|+..-
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~~---------~~~~~~~~~~~~~--~~~~dlIila~ 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLG---------IIDEGTTSIAKVE--DFSPDFVMLSS 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTT---------SCSEEESCGGGGG--GTCCSEEEECS
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHhh---------cchhhhhhhhhhh--ccccccccccC
Confidence 578899875 43 34444443 44568999999999999887752 2222222222211 23579998755
Q ss_pred cccCcccHHHHHHHHHhcccCCCEE
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
.. ......+..+...++++..+
T Consensus 71 p~---~~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 71 PV---RTFREIAKKLSYILSEDATV 92 (171)
T ss_dssp CH---HHHHHHHHHHHHHSCTTCEE
T ss_pred Cc---hhhhhhhhhhhccccccccc
Confidence 42 24567788888888877544
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.75 E-value=0.1 Score=35.93 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=67.0
Q ss_pred HHhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---
Q 025144 61 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 136 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 136 (257)
+.+..++.++.+||=.|||. |..+..+++..+ ...|+++|.+++-++.+++.- --.++..+-.+..
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~lG---------a~~~i~~~~~~~~~~~ 89 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFG---------ATECINPQDFSKPIQE 89 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHT---------CSEEECGGGCSSCHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHhC---------CcEEEeCCchhhHHHH
Confidence 33456788999999999873 566777777753 358999999998888877642 2223332211110
Q ss_pred ----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..++.+|+|+-.-. ....++.....+++||.+++..
T Consensus 90 ~~~~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 90 VLIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence 12356999985332 3567788889999988776553
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.68 E-value=0.1 Score=36.18 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred HhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.+..+.+++.+|+=+|||. |..+..+++.. ...+|+++|.+++-++.|++.-. ..++...-.+..
T Consensus 22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA---------~~~in~~~~~~~~~~~ 91 (176)
T d1d1ta2 22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGA---------TECISPKDSTKPISEV 91 (176)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTC---------SEEECGGGCSSCHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCC---------cEEECccccchHHHHH
Confidence 3445678899999999986 56667777764 23589999999999999987632 223322111110
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHH-HHhcccCCCEEEEEeec
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEE-SFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~-~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+++-... ....+.. +...++.+|.+++.-..
T Consensus 92 ~~~~~g~G~d~vi~~~g------~~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 92 LSEMTGNNVGYTFEVIG------HLETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp HHHHHTSCCCEEEECSC------CHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred HHHhccccceEEEEeCC------chHHHHHHHHHhhcCCeEEEEEEcc
Confidence 12356888874322 2333444 44444666888776544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.63 E-value=0.017 Score=44.20 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=43.8
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
.+.++... .+++..|||.-||+|..+....+. +...+|+|++++.++.+++++..
T Consensus 240 ~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 240 PEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence 33344433 457889999999999988877655 68999999999999999998753
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.50 E-value=0.043 Score=37.60 Aligned_cols=84 Identities=20% Similarity=0.099 Sum_probs=52.6
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|.=||+|. | .++..|.+ .+.+|+++|.+++.++.+++.- .+.....+.+.. ...|+|+..-
T Consensus 2 kI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~~~---------~~~~~~~~~~~~----~~~DiIilav 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVERQ---------LVDEAGQDLSLL----QTAKIIFLCT 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTT---------SCSEEESCGGGG----TTCSEEEECS
T ss_pred EEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHHhh---------ccceeeeecccc----cccccccccC
Confidence 567787763 3 33444443 3679999999998888776542 222222222222 4579998644
Q ss_pred cccCcccHHHHHHHHHhcccCCCEE
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
. .......++++...++++..+
T Consensus 66 p---~~~~~~vl~~l~~~l~~~~iv 87 (165)
T d2f1ka2 66 P---IQLILPTLEKLIPHLSPTAIV 87 (165)
T ss_dssp C---HHHHHHHHHHHGGGSCTTCEE
T ss_pred c---Hhhhhhhhhhhhhhcccccce
Confidence 3 234567888998888887755
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.00 E-value=0.033 Score=38.84 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred hhCCCCCCeEEEecCC--CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-CCCC
Q 025144 64 WSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSD 139 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~ 139 (257)
.-..+++.+||=-|++ .|..+..+++.. +.+|+++.-+++-.+.+++.-.. .+--...+..+ . ...+
T Consensus 26 ~g~~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~lGa~-------~vi~~~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 26 HGLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGAK-------EVLAREDVMAERIRPLDK 96 (176)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTCS-------EEEECC---------CCS
T ss_pred hCCCCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhcccc-------eeeecchhHHHHHHHhhc
Confidence 3456668899999864 467888888885 78999999998888888765211 11111111111 1 1345
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+.+|+|+-.-. ...+....+.|+++|+++..-..
T Consensus 97 ~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 97 QRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp CCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred cCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeecc
Confidence 67998875332 23467888999999999876544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.95 E-value=0.32 Score=33.31 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=64.6
Q ss_pred HhhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL---- 135 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~---- 135 (257)
.+..+++++.+||=+|+|. |.....+++.. ....|+++|.+++-.+.+++.- ...++.. +..+.
T Consensus 21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~~~ 90 (176)
T d2jhfa2 21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVG---------ATECVNPQDYKKPIQEV 90 (176)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred HHhhCCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhC---------CeeEEecCCchhHHHHH
Confidence 4455788999999999975 44556666664 3469999999999988887652 2222221 22221
Q ss_pred --CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
....+.+|+|+-... ....++.....++++ |.+++...
T Consensus 91 ~~~~~~~G~D~vid~~G------~~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 91 LTEMSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp HHHHTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred HHHHhcCCCCEEEecCC------chhHHHHHHHHHhcCCcceEEecC
Confidence 022457999885433 245566677778776 55555443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.0089 Score=41.63 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=61.2
Q ss_pred hhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CC
Q 025144 64 WSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FS 138 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 138 (257)
..+..++.+||=.|+ | .|..+..+++.. +.++++++.+++-.+.+++.- . . .++ |..+.. ..
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~lG----a----~-~~i--~~~~~~~~~~~ 88 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALG----A----E-EAA--TYAEVPERAKA 88 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTT----C----S-EEE--EGGGHHHHHHH
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccccc----c----c-eee--ehhhhhhhhhc
Confidence 356789999999885 3 467888888884 679999999888777766531 1 1 111 111110 12
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...+|+|+-... ..+....+.|+|+|.++..
T Consensus 89 ~~g~D~v~d~~G--------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 89 WGGLDLVLEVRG--------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp TTSEEEEEECSC--------TTHHHHHTTEEEEEEEEEC
T ss_pred cccccccccccc--------hhHHHHHHHHhcCCcEEEE
Confidence 356999885321 1246678899999998765
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.93 E-value=0.14 Score=33.49 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=55.7
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
+|+=+|+ |..+..+++.+ ..+.+|+++|.+++.++.+++. .+..++.+|..+.. ..-...|.++
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhhhc
Confidence 4566665 66766666554 2367999999999988877654 25778999998742 2235688888
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
+.-. -++.........+.+.+...+
T Consensus 71 ~~t~---~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 71 AVTG---KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp ECCS---CHHHHHHHHHHHHHTTCCCEE
T ss_pred ccCC---cHHHHHHHHHHHHHcCCceEE
Confidence 6321 112222344455556666443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.87 E-value=0.047 Score=40.71 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
+.+.+++.. ..++..|||.=||+|..+....+. +.+++|+|++++..+.+++++..
T Consensus 196 L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 196 VIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHH
Confidence 344444444 367889999999999988777665 57999999999999999999864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.83 E-value=0.24 Score=33.94 Aligned_cols=102 Identities=11% Similarity=0.159 Sum_probs=62.3
Q ss_pred HhhhCCCCCCeEEEecCCCCh-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 62 VSWSGAKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.+..+.+++.+|+=+|+|.+. .+..+++.. ....|+++|.+++-++.+++. .--.++..+-++..
T Consensus 21 ~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~---------GAd~~in~~~~~~~~~~~ 90 (175)
T d1cdoa2 21 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF---------GATDFVNPNDHSEPISQV 90 (175)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT---------TCCEEECGGGCSSCHHHH
T ss_pred HHhhCCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHc---------CCcEEEcCCCcchhHHHH
Confidence 345578899999999999854 444455553 355899999999988888765 22234433222211
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...+.+|+|+-.-. ....+......++++ |.+++.-.
T Consensus 91 ~~~~~~~G~d~vid~~G------~~~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 91 LSKMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp HHHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHhhccCCcceeeeecC------CHHHHHHHHHHhhCCCcceeEEEe
Confidence 12346899874332 245566677776665 44444433
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.79 E-value=0.034 Score=40.98 Aligned_cols=110 Identities=18% Similarity=0.113 Sum_probs=70.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHh---C------------------------------------CCceEEEEeCChhH
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQV---G------------------------------------SQGKVIGLDFSKNQ 106 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~------------------------------------~~~~v~~~D~s~~~ 106 (257)
.-..+..++|.-||+|.+.+..+-.. . ....+.+.|.++.+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 44556689999999999987654320 0 01256788888888
Q ss_pred HHHHH---hhhhhhhhccCCCeeEEEccCCCCC-----CCCCcccEEEecccccCcc---------cHHHHHHHHHhccc
Q 025144 107 LSMAS---SRQDLVSKACYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNVV---------DKRKALEESFRVLK 169 (257)
Q Consensus 107 ~~~a~---~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~Lk 169 (257)
++.|+ +++...+.. ..+.+.+.|+.+.. .++..+++|+++-....-- ....+...+.+++.
T Consensus 127 i~~A~~~r~n~~~Agl~--~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 127 AQAARRLRERLTAEGGA--LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHHHTTSS--CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCC--ceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 88874 355444433 57899999987642 1245689999987644321 13455666777776
Q ss_pred CCCEEEEE
Q 025144 170 PGSRISVL 177 (257)
Q Consensus 170 ~gG~l~~~ 177 (257)
....+++.
T Consensus 205 ~~s~~~it 212 (249)
T d1o9ga_ 205 AHAVIAVT 212 (249)
T ss_dssp TTCEEEEE
T ss_pred CCcEEEEe
Confidence 55555554
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.67 Score=35.35 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh------------------hc
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS------------------KA 120 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------------------~~ 120 (257)
..+...+...+...|+-+|||.=.....+.+.. ++..++=+|. |++++.-++.+...+ ..
T Consensus 86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~-~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~ 163 (328)
T d1rjda_ 86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLI 163 (328)
T ss_dssp HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEE
T ss_pred HHHHHHHHHCCCcEEEEeCCccchHHHHhhccC-CCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccC
Confidence 333344444556689999999876666666553 4556666666 445444333332210 00
Q ss_pred cCCCeeEEEccCCCCC---------CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC---CCchh
Q 025144 121 CYKNIEWVEGDALDLP---------FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK---STQPF 186 (257)
Q Consensus 121 ~~~~~~~~~~d~~~~~---------~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~---~~~~~ 186 (257)
..++...+..|+.+.. +..+..-++++-.++.+++ +..++++.+.+..+ +|.+++.+... ++..+
T Consensus 164 ~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~D~F 242 (328)
T d1rjda_ 164 DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPNDRF 242 (328)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTTCCH
T ss_pred CCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCCChH
Confidence 1246788889988742 2233445788888888885 46777888877765 56676777653 44444
Q ss_pred HHHHHH
Q 025144 187 TTAIQE 192 (257)
Q Consensus 187 ~~~~~~ 192 (257)
...+..
T Consensus 243 G~~M~~ 248 (328)
T d1rjda_ 243 GAIMQS 248 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.18 Score=37.50 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhC--CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
+.+|.=|-.|++.+...+++.+- .+..|+..+.+++-++.+.+.++..+ .++.++..|+.+.. -
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEEecCCHHHHHHHHHHHHH
Confidence 56776666666666665555431 36799999999999888888776543 57899999998852 0
Q ss_pred CCCcccEEEecccccCcc---c----------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVV---D----------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~---~----------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+..|+++.+..+.... + .-.+.+.+...|+++|.++.+.
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 126799999877654321 1 1234677788888899876654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.29 Score=36.02 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=54.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
+++.+|=-|++.| +...+++.+ ..+.+|+..|.+++.++.+.+.++..+.. .++..+++|+.+.. -
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4667888887665 333333332 24789999999999888887777654322 46788999998742 0
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 86 ~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 86 QHSGVDICINNAGLA 100 (257)
T ss_dssp HHCCCSEEEECCCCC
T ss_pred hcCCCCEEEeccccc
Confidence 126799998765543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.41 E-value=0.48 Score=32.82 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=61.9
Q ss_pred hhhCCCCC--CeEEEec--CCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--
Q 025144 63 SWSGAKTG--DNVLDVC--CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 136 (257)
Q Consensus 63 ~~~~~~~~--~~vLdiG--~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 136 (257)
...+.+++ .+||=.| .|.|..+..+++.++. ..+++++.+++......+.+ .--.++...-.++.
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~~--------gad~vi~~~~~~~~~~ 92 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSEL--------GFDAAVNYKTGNVAEQ 92 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHHS--------CCSEEEETTSSCHHHH
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhcc--------cceEEeeccchhHHHH
Confidence 33445555 6799877 4679999999998632 35777777766555444332 22334443333321
Q ss_pred ---CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 137 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..++.+|+|+-.-. ...+....+.|+++|+++..
T Consensus 93 ~~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 93 LREACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence 12356999974221 35678899999999999764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.057 Score=41.53 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=52.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 146 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 146 (257)
.+|+|+-||.|.+..-+.+. +-..+ +.++|+++.+.+..+.+. ++..++..|+.++. ++...+|+++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll~ 73 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEEE
Confidence 47999999999988777554 32333 678999998888777664 56677888888764 2223689999
Q ss_pred ecccccCc
Q 025144 147 MGYGLRNV 154 (257)
Q Consensus 147 ~~~~l~~~ 154 (257)
.......+
T Consensus 74 ggpPCq~f 81 (343)
T d1g55a_ 74 MSPPCQPF 81 (343)
T ss_dssp ECCC----
T ss_pred eecccccc
Confidence 87766655
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.04 E-value=0.53 Score=30.42 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=50.4
Q ss_pred EEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEEe
Q 025144 73 VLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITM 147 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~ 147 (257)
++=+|+ |..+..+++.+ ..+.+|+++|.+++.++.++.. ....+.+|..+.. ..-...|.+++
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----------~~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----------ATHAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----------CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----------CCcceeeecccchhhhccCCccccEEEE
Confidence 444555 56666655543 1367999999999988877543 3456778887753 11235787765
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
... .- +....+-...+.+.+...++..
T Consensus 71 ~~~--~~-~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 71 AIG--AN-IQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp CCC--SC-HHHHHHHHHHHHHTTCSEEEEE
T ss_pred EcC--ch-HHhHHHHHHHHHHcCCCcEEee
Confidence 332 11 1222333333334455565443
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.96 E-value=0.37 Score=36.34 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=52.7
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEeccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 150 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 150 (257)
+|+|+=||.|.+..-+.+. + ...+.++|+++.+.+.-+.+. .-.++.+|+.++.. .-...|+++....
T Consensus 2 k~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~---------~~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHC---------CSEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---------CCCCccCChhhCCHhHcccccEEeeccc
Confidence 6999999999998887665 2 234669999998888777664 23567889988742 1235899998766
Q ss_pred ccCc
Q 025144 151 LRNV 154 (257)
Q Consensus 151 l~~~ 154 (257)
...+
T Consensus 71 Cq~f 74 (324)
T d1dcta_ 71 CQSW 74 (324)
T ss_dssp CTTT
T ss_pred cccc
Confidence 6655
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.83 E-value=0.17 Score=34.71 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-C-C-CCCCC
Q 025144 66 GAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-D-L-PFSDC 140 (257)
Q Consensus 66 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~-~-~~~~~ 140 (257)
..+++.+||=-|+ |.|..+..+++.. +++|+++.-+++-.+.+++.-. ..+ +...|.. + . ....+
T Consensus 20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~lGa-------d~v-i~~~~~~~~~~~~~~~~ 89 (167)
T d1tt7a2 20 LSPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQLGA-------SEV-ISREDVYDGTLKALSKQ 89 (167)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHHTC-------SEE-EEHHHHCSSCCCSSCCC
T ss_pred CCCCCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhhcc-------cce-EeccchhchhhhcccCC
Confidence 3445667887774 4577888999886 6899999998887777765421 111 1111111 1 1 12346
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+|+|+-.-. ...+.+..+.|+++|.+++.-..
T Consensus 90 gvd~vid~vg-------g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 90 QWQGAVDPVG-------GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp CEEEEEESCC-------THHHHHHHTTEEEEEEEEECCCS
T ss_pred CceEEEecCc-------HHHHHHHHHHhccCceEEEeecc
Confidence 7999874321 35678899999999999776544
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.61 E-value=1.5 Score=32.94 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 147 (257)
.+.+|+|+-||.|.+..-|.+. + -.-+.++|+++.+++..+.+.. +. .++|+.++... -..+|+++.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~--------~~--~~~Di~~~~~~~~~~~Dll~g 77 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFG--------EK--PEGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHS--------CC--CBSCGGGSCGGGSCCCSEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCC--------CC--CcCchhcCchhhcceeeeeec
Confidence 4579999999999999887654 2 2246679999999888877762 21 24677765411 235899998
Q ss_pred cccccCc
Q 025144 148 GYGLRNV 154 (257)
Q Consensus 148 ~~~l~~~ 154 (257)
......+
T Consensus 78 gpPCq~f 84 (327)
T d2c7pa1 78 GFPCQAF 84 (327)
T ss_dssp ECCCTTT
T ss_pred ccccchh
Confidence 7665544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.59 E-value=0.43 Score=30.77 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=57.5
Q ss_pred CCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEEecccccC
Q 025144 78 CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLRN 153 (257)
Q Consensus 78 ~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~~ 153 (257)
||.|..+..+++.+ .+..+..+|.+++..+..+. ..+.++.+|..+.. ..-+..+.+++...
T Consensus 6 ~G~g~~g~~l~~~L-~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~--- 71 (129)
T d2fy8a1 6 CGWSESTLECLREL-RGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE--- 71 (129)
T ss_dssp ESCCHHHHHHHHTS-CGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS---
T ss_pred ECCCHHHHHHHHHH-cCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEecc---
Confidence 56788999999987 46789999999988776543 46789999988742 22345777776331
Q ss_pred cccHHHHHHHHHhcccCCCEEEEEe
Q 025144 154 VVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 154 ~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-+.....+....+.+.|...++...
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred chhhhHHHHHHHHHHCCCceEEEEE
Confidence 1112223444555677887765543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.58 E-value=0.15 Score=40.20 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=41.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhh
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..++..++|||+-.|..+..++..... ..+|+++|+++...+..+++++.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 456779999999999999887776432 35899999999999999887654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.91 E-value=1 Score=32.73 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=54.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++.+|=-|+ ++.+...+++.+ ..+++|..+|.+++.++.+.+.++..+ .++..+..|+.+.. -
T Consensus 9 enKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 9 ENKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp SSCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3555666665 455666666654 346799999999999888887775543 57889999998742 1
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 84 ~~g~iDilvnnag~~ 98 (251)
T d2c07a1 84 EHKNVDILVNNAGIT 98 (251)
T ss_dssp HCSCCCEEEECCCCC
T ss_pred hcCCceeeeeccccc
Confidence 136799998765543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.56 Score=32.25 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCccc
Q 025144 68 KTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 143 (257)
+++.+||=.|+ |.|..+..+++.+ +.+++++.-+++..+.+++.- --.++..+-.+. ......+|
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~lG---------ad~vi~~~~~~~~~~l~~~~~~ 98 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSLG---------ASRVLPRDEFAESRPLEKQVWA 98 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHT---------EEEEEEGGGSSSCCSSCCCCEE
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhhc---------cccccccccHHHHHHHHhhcCC
Confidence 33447776664 3567888888885 789999999998887776542 122233222221 23446678
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.|+- .+ ....+....+.|+++|.++..-
T Consensus 99 ~vvD-~V------gg~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 99 GAID-TV------GDKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp EEEE-SS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred eeEE-Ec------chHHHHHHHHHhccccceEeec
Confidence 8752 22 1356888999999999998764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=91.59 E-value=0.49 Score=32.81 Aligned_cols=103 Identities=10% Similarity=0.009 Sum_probs=60.0
Q ss_pred HhhhCCCCCCeEEEecCC---CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc---CCCC
Q 025144 62 VSWSGAKTGDNVLDVCCG---SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDL 135 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G---~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~~ 135 (257)
....+..++.+||=+.+| .|..+..+++.. +.+++++--+++..+...+.++..+. -.++..+ ..+.
T Consensus 21 ~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGa-----d~vi~~~~~~~~~~ 93 (189)
T d1gu7a2 21 THYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGA-----TQVITEDQNNSREF 93 (189)
T ss_dssp HSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTC-----SEEEEHHHHHCGGG
T ss_pred HHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccc-----cEEEeccccchhHH
Confidence 344567888888887333 466778888886 67888775555555444444443331 2233222 1111
Q ss_pred C--------CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 P--------FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~--------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. ...+.+|+|+-.- . ...+....+.|+++|+++..-
T Consensus 94 ~~~v~~~~~~~g~~vdvv~D~v-----g--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 94 GPTIKEWIKQSGGEAKLALNCV-----G--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHHHHHTCCEEEEEESS-----C--HHHHHHHHHTSCTTCEEEECC
T ss_pred HHHHHHHHhhccCCceEEEECC-----C--cchhhhhhhhhcCCcEEEEEC
Confidence 0 0134588887321 1 345677889999999997653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.58 E-value=0.054 Score=39.77 Aligned_cols=52 Identities=4% Similarity=0.010 Sum_probs=35.9
Q ss_pred eEEEccCCCC--CCCCCcccEEEecccccC----c---c-------cHHHHHHHHHhcccCCCEEEEE
Q 025144 126 EWVEGDALDL--PFSDCFFDAITMGYGLRN----V---V-------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 126 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~----~---~-------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+++++|..+. .++++++|+|+..-.... . . -....+.+++++|+|||.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 4677777653 366788999998655321 1 1 1345788999999999988654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.71 E-value=0.2 Score=37.06 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=36.8
Q ss_pred eEEEccCCCC--CCCCCcccEEEecccccC-----------cccHHHHHHHHHhcccCCCEEEEEe
Q 025144 126 EWVEGDALDL--PFSDCFFDAITMGYGLRN-----------VVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 126 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.++.+|..+. .++++++|+|+..-.... .......+.++.++|||+|.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 3555666543 367889999998665321 1225677899999999999987753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.67 E-value=1.6 Score=29.49 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=54.3
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeE------EEccCCCCCCCCCccc
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW------VEGDALDLPFSDCFFD 143 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~------~~~d~~~~~~~~~~~D 143 (257)
++|.=||+|. |......+.. .+.+|+++|.+++-++..++.-...... +.... ...|..+. -...|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~---~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEG--PGLAGTAHPDLLTSDIGLA---VKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEES--SSCCEEECCSEEESCHHHH---HTTCS
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhh--hhhhhhhhhhhhhhhhHhH---hcCCC
Confidence 4778889886 3333333333 3689999999998887766542110000 11111 11111110 13589
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+|++.-. .......++++...++++..++
T Consensus 75 ~iii~v~---~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 75 VILIVVP---AIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp EEEECSC---GGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEEEEEc---hhHHHHHHHHhhhccCCCCEEE
Confidence 9987432 2245788999999999887654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.18 E-value=0.55 Score=34.30 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------CC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------FS 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 138 (257)
++++|=-|++.| +...+++.+ ..+++|..+|.+++.++.+.+.+...... .++.++..|+.+.. -.
T Consensus 3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEP--QKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCG--GGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCC--CcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 556676776544 444444432 24789999999999888877766443211 47888999998742 01
Q ss_pred CCcccEEEecccccCccc
Q 025144 139 DCFFDAITMGYGLRNVVD 156 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~ 156 (257)
.+..|+++.+.......+
T Consensus 80 ~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HSCCCEEEECCCCCCSSS
T ss_pred cCCcCeeccccccccccc
Confidence 257999998777665544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.85 E-value=0.67 Score=33.90 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=65.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEE-eCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGL-DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 136 (257)
.++++|=-|+ ++.+...+++.+ ..+++|+.. +.+++.++.+.+.+...+ .++..+..|+.+..
T Consensus 5 ~GK~alITGa-s~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 5 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHHHHHHH
Confidence 4667886664 555555444443 236778765 566666777777765544 57889999998742
Q ss_pred CCCCcccEEEecccccCccc-------------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+..|+++.+....+..+ .-.+.+.+.+.++.+|.++++.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 11257999997766554421 2334666777777777665543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=1.3 Score=31.95 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.|+.+|=-|++.| +...+++.+ ..+.+|...|.+++-++...+.+...+ .++..+.+|+.+.. -
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3556666676655 333333332 237899999999999888887776543 57899999998852 1
Q ss_pred CCCcccEEEecccccCc
Q 025144 138 SDCFFDAITMGYGLRNV 154 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~ 154 (257)
..+..|+++.+......
T Consensus 81 ~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HTCCCSEEEECCCCCCC
T ss_pred HcCCCceeEeecccccc
Confidence 23679999987665544
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.29 E-value=1.6 Score=32.03 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCC-hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS-KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 136 (257)
.++++|=-|++.| +...+++.+ ..+++|+..|.+ ++.++...+.++..+ .++.++..|+.+..
T Consensus 17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC----CceeeEeCCCCCHHHHHHHHHHHH
Confidence 3567777776554 444443332 236799999876 455565555554433 57889999998742
Q ss_pred CCCCcccEEEecccccCccc-------------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-..+..|+++.+........ .-.+.+.+.+.|+.+|.++++.
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 01256899987655443311 2334677777888888776653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=1.7 Score=31.32 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------CCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 141 (257)
.++++|=-|++.| +...+++.+ ..+++|..+|.+++-++...+.. +++..++.|+.+.. -.-++
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC--------PGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 4678888887655 433333332 23689999999988877665544 46788889987742 12367
Q ss_pred ccEEEecccccC
Q 025144 142 FDAITMGYGLRN 153 (257)
Q Consensus 142 ~D~v~~~~~l~~ 153 (257)
.|+++.+.....
T Consensus 77 iDilVnnAg~~~ 88 (244)
T d1pr9a_ 77 VDLLVNNAAVAL 88 (244)
T ss_dssp CCEEEECCCCCC
T ss_pred ceEEEecccccc
Confidence 999997665443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.44 E-value=2.1 Score=30.77 Aligned_cols=75 Identities=19% Similarity=0.106 Sum_probs=48.8
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------CC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------FS 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 138 (257)
++++|=-|++. .+...+++.+ ..+.+|..+|.+++.++...+.+. .+...+..|+.+.. -.
T Consensus 4 gK~alITGas~-GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 4 GKIALVTGASR-GIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp TCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 55666666554 4444444433 236799999999988877766552 46778889988742 11
Q ss_pred CCcccEEEeccccc
Q 025144 139 DCFFDAITMGYGLR 152 (257)
Q Consensus 139 ~~~~D~v~~~~~l~ 152 (257)
.+..|+++.+....
T Consensus 76 ~g~iDilVnnAg~~ 89 (243)
T d1q7ba_ 76 FGEVDILVNNAGIT 89 (243)
T ss_dssp TCSCSEEEECCCCC
T ss_pred cCCcceehhhhhhc
Confidence 26799999765543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.22 E-value=1.6 Score=28.77 Aligned_cols=95 Identities=11% Similarity=-0.084 Sum_probs=53.8
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
.|+=+|+ |..+..+++.+ ..+.+++.+|.+++......+.... .++.++.+|..+.. ..-+..|.++
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~------~~~~vi~Gd~~d~~~L~~a~i~~a~~vi 76 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG------DNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC------TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc------CCcEEEEccCcchHHHHHhccccCCEEE
Confidence 5666666 55665555543 1356899999988654333332211 47899999998742 2234678887
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+... -+.....+....+.+.|...+++.
T Consensus 77 ~~~~---~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 77 ALSD---NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp ECSS---CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred Eccc---cHHHHHHHHHHHHHhCCCCceEEE
Confidence 6431 111122233344455677666554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.19 E-value=2.9 Score=30.16 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=51.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++++|=-|++.| +...+++.+ ..+++|..+|.+.+.++.+.+.+..... .++..+..|+.+.. -
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG---VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3667777776654 443333332 2368999999998887776655533221 47888999998742 0
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 125799999766543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=86.90 E-value=0.44 Score=35.93 Aligned_cols=76 Identities=20% Similarity=0.143 Sum_probs=46.5
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEe-CChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CCCCcccE
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLD-FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDCFFDA 144 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D-~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~ 144 (257)
+||=.| |+|..+.++.+.+ ..+.+|+++| ++............. .++++++.+|+.+.. +...++|.
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~-----~~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-----LGNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc-----cCCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 677444 7899998887765 3467999998 333222111111111 168999999998742 22235799
Q ss_pred EEecccccC
Q 025144 145 ITMGYGLRN 153 (257)
Q Consensus 145 v~~~~~l~~ 153 (257)
|+-......
T Consensus 76 Vih~aa~~~ 84 (338)
T d1orra_ 76 CFHLAGQVA 84 (338)
T ss_dssp EEECCCCCC
T ss_pred EEeeccccc
Confidence 986555443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=86.48 E-value=1.5 Score=30.20 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=58.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc----c----------CCCeeEEEccCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA----C----------YKNIEWVEGDALDL 135 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~----------~~~~~~~~~d~~~~ 135 (257)
.+|.=||+|+ |.-...+... .+.+|+.+|.+++.++.+.++....-.. . ..++. ...+...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR-PTLSYGDF 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE-EESSSTTG
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee-cccccccc
Confidence 4788899875 4333323323 3789999999999998877764321100 0 00121 12222221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
...|+|+= .+...++-...+++++-+.++++-.|.-
T Consensus 82 ----~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaS 117 (186)
T d1wdka3 82 ----GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILAS 117 (186)
T ss_dssp ----GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred ----cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEe
Confidence 34688774 4455555567789999999998877644
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.16 E-value=0.62 Score=32.48 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=58.4
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----cc---------------CCCeeEEEc
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----AC---------------YKNIEWVEG 130 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~---------------~~~~~~~~~ 130 (257)
.+|.-||+|+ |.-...+... .+.+|+.+|.+++.++.+.+++...-. .. ..++... .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence 4788999986 5443344333 378999999999999988876542100 00 0011221 1
Q ss_pred cCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 131 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 131 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
|..+. -...|+|+=. +...++--..+++++.+.++++..+.-
T Consensus 82 d~~~a---~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~ilas 123 (192)
T d1f0ya2 82 DAASV---VHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIFAS 123 (192)
T ss_dssp CHHHH---TTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred hhHhh---hcccceehhh-cccchhHHHHHHHHHhhhcccCceeec
Confidence 21110 1236777632 334444467789999999998876643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=85.41 E-value=2.2 Score=30.83 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=62.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++++|=-|++.| +...+++.+ ..+++|..+|.+++.++.+.+.+. .+..++..|+.+.. -
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-------ERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-------TTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-------CCeEEEEeecCCHHHHHHHHHHHHH
Confidence 4567776675544 444444432 236899999999988777665542 46778888988742 0
Q ss_pred CCCcccEEEecccccCcc---c----------------HHHHHHHHHhccc-CCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVV---D----------------KRKALEESFRVLK-PGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~---~----------------~~~~l~~~~~~Lk-~gG~l~~~~ 178 (257)
..+..|+++.+....... + .-.+.+.+.+.|+ .+|.++.+.
T Consensus 77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 126789999766543321 1 1223555566664 478876654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.92 E-value=3.7 Score=26.93 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=55.6
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.+.+|-=||+|. |....+.+...+-..++..+|+.++..+--..-+..........+.+...|.+++ ...|+|+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l----~daDvvv 79 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC----RDADLVV 79 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT----TTCSEEE
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHh----ccceeEE
Confidence 3466899999864 4444444333233458999999887643221112111111113556666776654 2369998
Q ss_pred ecccccCccc-------------HHHHHHHHHhcccCCCEEEEE
Q 025144 147 MGYGLRNVVD-------------KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 147 ~~~~l~~~~~-------------~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
........+. .....+++.+. .|++.++++
T Consensus 80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivv 122 (148)
T d1ldna1 80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVA 122 (148)
T ss_dssp ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred EecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEe
Confidence 7655443321 12233344433 478877654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=84.60 E-value=0.79 Score=34.76 Aligned_cols=71 Identities=27% Similarity=0.245 Sum_probs=45.6
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeC----ChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CCCCc
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDCF 141 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~ 141 (257)
+||=.| |+|..+..+++.+ ..+.+|+++|. ....+...+... ..++.++++|+.+.. +....
T Consensus 2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~l~~~~~~~~ 73 (338)
T d1udca_ 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-------GKHPTFVEGDIRNEALMTEILHDHA 73 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-------TSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-------CCCCEEEEeecCCHHHHHHHHhccC
Confidence 566666 7999888887765 34679999984 222222222211 158999999998853 22346
Q ss_pred ccEEEeccc
Q 025144 142 FDAITMGYG 150 (257)
Q Consensus 142 ~D~v~~~~~ 150 (257)
+|+|+-...
T Consensus 74 ~d~ViHlAa 82 (338)
T d1udca_ 74 IDTVIHFAG 82 (338)
T ss_dssp CSEEEECCS
T ss_pred CCEEEECCC
Confidence 899985444
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.52 E-value=0.53 Score=36.59 Aligned_cols=79 Identities=20% Similarity=0.124 Sum_probs=44.6
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHh-------------hhhhhhhccCCCeeEEEccCCCC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASS-------------RQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~-------------~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
|.+||=.| |+|..+.++++.+ ..+.+|+++|.-......... .+.........++.++.+|+.+.
T Consensus 1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 45787777 6999888887664 346899999932111111110 00000000115789999999874
Q ss_pred C-----CCCCcccEEEecc
Q 025144 136 P-----FSDCFFDAITMGY 149 (257)
Q Consensus 136 ~-----~~~~~~D~v~~~~ 149 (257)
. +.+..+|+|+-..
T Consensus 80 ~~l~~~~~~~~~d~ViHlA 98 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFG 98 (393)
T ss_dssp HHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHhhcchheeccc
Confidence 2 2233579888444
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.08 E-value=2.8 Score=30.01 Aligned_cols=75 Identities=20% Similarity=0.096 Sum_probs=49.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC------CCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 141 (257)
.++++|=-|++.| +...+++.+ ..+++|..+|.+++-++...+.. +++..+..|+.+.. -.-++
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC--------PGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 4667887776554 444444432 24789999999987776655543 56788889988742 11267
Q ss_pred ccEEEeccccc
Q 025144 142 FDAITMGYGLR 152 (257)
Q Consensus 142 ~D~v~~~~~l~ 152 (257)
.|+++.+....
T Consensus 75 iDilVnnAg~~ 85 (242)
T d1cyda_ 75 VDLLVNNAALV 85 (242)
T ss_dssp CSEEEECCCCC
T ss_pred CeEEEECCccc
Confidence 99999765543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.22 E-value=1.9 Score=26.10 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCCeEEEecC-CCCh--hHHHHHHHhCCCceEEEEeCChh-HHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 69 TGDNVLDVCC-GSGD--LSFLLSEQVGSQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~-G~G~--~~~~l~~~~~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
...+|.=||. |+|- ++..|.++ +.+|+|.|.... ..+...+ ..+.+..+...+. . ...|+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~---G~~VsGSD~~~~~~~~~L~~----------~Gi~v~~g~~~~~-i--~~~d~ 70 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNE---GYQISGSDIADGVVTQRLAQ----------AGAKIYIGHAEEH-I--EGASV 70 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHH---TCEEEEEESCCSHHHHHHHH----------TTCEEEESCCGGG-G--TTCSE
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhC---CCEEEEEeCCCChhhhHHHH----------CCCeEEECCcccc-C--CCCCE
Confidence 3457888875 4553 44555554 789999997532 2222221 2455555554432 2 34789
Q ss_pred EEeccccc
Q 025144 145 ITMGYGLR 152 (257)
Q Consensus 145 v~~~~~l~ 152 (257)
|+.+..+.
T Consensus 71 vV~S~AI~ 78 (96)
T d1p3da1 71 VVVSSAIK 78 (96)
T ss_dssp EEECTTSC
T ss_pred EEECCCcC
Confidence 88776654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.05 E-value=0.16 Score=38.32 Aligned_cols=55 Identities=18% Similarity=0.042 Sum_probs=40.0
Q ss_pred CeeEEEccCCCC--CCCCCcccEEEecccccCc--------------ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 124 NIEWVEGDALDL--PFSDCFFDAITMGYGLRNV--------------VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 124 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+-.++++|..+. .++++++|+|+..-....- ......+..++++|+|+|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 457888888752 3678999999986543211 114667999999999999987753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.05 E-value=3 Score=30.19 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=52.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++++|=-|++.| +...+++.+ ..+++|..+|.+++.++.+.+.++..+ .++..+..|+.+.. -
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4667777776554 433333332 236899999999999988887776543 57888999998742 0
Q ss_pred CCCcccEEEeccc
Q 025144 138 SDCFFDAITMGYG 150 (257)
Q Consensus 138 ~~~~~D~v~~~~~ 150 (257)
..+..|+++.+..
T Consensus 79 ~~g~iDilVnnaG 91 (260)
T d1zema1 79 DFGKIDFLFNNAG 91 (260)
T ss_dssp HHSCCCEEEECCC
T ss_pred HhCCCCeehhhhc
Confidence 1257999997644
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.00 E-value=2.8 Score=30.31 Aligned_cols=79 Identities=8% Similarity=-0.035 Sum_probs=54.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++++|=-| |++.+...+++.+ ..+++|..+|.+++.++.+.+.++..+ .++..+.+|+.+.. -
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG----GQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 355666555 4555555555543 347899999999998888887776543 57888999998742 0
Q ss_pred CCCcccEEEeccccc
Q 025144 138 SDCFFDAITMGYGLR 152 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~ 152 (257)
..+..|+++.+....
T Consensus 85 ~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 85 KLGKVDILVNNAGGG 99 (255)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred HcCCCCEeeeCCcCC
Confidence 125799998765543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=81.72 E-value=6.9 Score=27.77 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=65.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.++++|=.|++.| +...+++.+ ..+.+|..++.+.+.++...+.+. .++.+++.|+.+.. -
T Consensus 4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAALE-------AEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC-------SSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 4667777776654 444444433 347899999999987766555442 57888999998742 0
Q ss_pred CCCcccEEEecccccCccc-------------------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 138 SDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+..|+++.+........ +-.+.+.+...++.++.+++....
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~ 137 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 137 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence 1157999988655443311 122355666777777776665433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=81.52 E-value=3.2 Score=30.08 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------- 136 (257)
.++++|=.|+..| +...+++.+ ..+.+|..++.+++-++.+.+.+...+ ..+.++..|+.+..
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEeecCCHHHHHHHHHHHHH
Confidence 4678888887554 433333322 236899999999988888777765543 57788899998742
Q ss_pred CCCCcccEEEecccccC
Q 025144 137 FSDCFFDAITMGYGLRN 153 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~ 153 (257)
..++..|+++.+.....
T Consensus 80 ~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HhCCCcEEEeccccccc
Confidence 11356888887555443
|