Citrus Sinensis ID: 025148
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| 225424554 | 248 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.963 | 0.736 | 1e-100 | |
| 297845654 | 239 | F21J9.14 [Arabidopsis lyrata subsp. lyra | 0.887 | 0.953 | 0.735 | 1e-98 | |
| 186478827 | 239 | S-adenosylmethionine-dependent methyltra | 0.887 | 0.953 | 0.739 | 1e-98 | |
| 224110814 | 248 | predicted protein [Populus trichocarpa] | 0.778 | 0.806 | 0.83 | 3e-94 | |
| 356528430 | 244 | PREDICTED: uncharacterized protein LOC10 | 0.766 | 0.807 | 0.827 | 6e-94 | |
| 255547952 | 249 | conserved hypothetical protein [Ricinus | 0.828 | 0.855 | 0.755 | 5e-93 | |
| 156763854 | 248 | hypothetical protein [Nicotiana tabacum] | 0.957 | 0.991 | 0.68 | 1e-92 | |
| 356495254 | 248 | PREDICTED: uncharacterized protein LOC10 | 0.774 | 0.802 | 0.804 | 7e-92 | |
| 356529773 | 250 | PREDICTED: uncharacterized protein LOC10 | 0.782 | 0.804 | 0.797 | 5e-91 | |
| 388494758 | 248 | unknown [Lotus japonicus] | 0.774 | 0.802 | 0.798 | 1e-90 |
| >gi|225424554|ref|XP_002282020.1| PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/243 (73%), Positives = 207/243 (85%), Gaps = 4/243 (1%)
Query: 4 TQSKSPIFKYFLISIFLTLPLLLLLLLFSLKAAVHPPPLPQNVALAESEDLRIRPGYSSY 63
T++K KYF S+F+++P+LLL SL+ PP P N S DLRIRPGY+SY
Sbjct: 3 TKTKPLFLKYFFFSLFVSIPILLLFSFQSLRRKTTDPP-PGN---QPSGDLRIRPGYTSY 58
Query: 64 DAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQ 123
+AY+Q QLNKTLNPKLR WTTRDWDRKI VFA+FF DLK+K+LL NESKALCIGARVGQ
Sbjct: 59 EAYLQLQLNKTLNPKLRKIWTTRDWDRKINVFAQFFQDLKQKQLLKNESKALCIGARVGQ 118
Query: 124 EVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVME 183
EVEAL+RVGV+DSVGIDLVPYPPLV++GDFH QPF ++TFDFEFSNVFDHALYPDKFV E
Sbjct: 119 EVEALRRVGVADSVGIDLVPYPPLVLKGDFHNQPFKNDTFDFEFSNVFDHALYPDKFVGE 178
Query: 184 IERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVV 243
IERTL+PGGVCVLHVALS+R+DKYSANDL+SV+PL ++F RSE+V VR VDGFGLDTEVV
Sbjct: 179 IERTLRPGGVCVLHVALSRRSDKYSANDLYSVRPLTEMFGRSEVVHVRTVDGFGLDTEVV 238
Query: 244 FRK 246
FRK
Sbjct: 239 FRK 241
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845654|ref|XP_002890708.1| F21J9.14 [Arabidopsis lyrata subsp. lyrata] gi|297336550|gb|EFH66967.1| F21J9.14 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/242 (73%), Positives = 205/242 (84%), Gaps = 14/242 (5%)
Query: 9 PIFKYFLISIFLTLPLLLLLLLFSLKAAVHPPPLPQNVALAESEDLRIRPGYSSYDAYIQ 68
PI KY L+SIFL+LPL+L FS++ V E E +RIRPGY+SYD YIQ
Sbjct: 6 PILKYVLVSIFLSLPLILF---FSIQ-----------VRKPEKELIRIRPGYTSYDYYIQ 51
Query: 69 RQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEAL 128
RQLNKTLNP+LRT W TRDWDRKI+VF++FF DLKR+ LLSN+SK LC+GARVGQEVEAL
Sbjct: 52 RQLNKTLNPRLRTIWMTRDWDRKIKVFSRFFQDLKRQGLLSNDSKCLCVGARVGQEVEAL 111
Query: 129 KRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTL 188
KRVGV+DSVG+DLVPYPPLV++GDFH QPFDDETFDFEFSNVFDHALYP+KFV EIERTL
Sbjct: 112 KRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSNVFDHALYPEKFVGEIERTL 171
Query: 189 KPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNA 248
+ GG+CVLHVALS R+DKYSANDL+SV+ LVKLF+RSE+V VR VDGFGLDTEVVFRK
Sbjct: 172 RHGGLCVLHVALSTRSDKYSANDLYSVEALVKLFRRSEVVHVRNVDGFGLDTEVVFRKKR 231
Query: 249 KS 250
+S
Sbjct: 232 ES 233
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478827|ref|NP_173857.2| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|9743354|gb|AAF97978.1|AC000103_28 F21J9.14 [Arabidopsis thaliana] gi|332192414|gb|AEE30535.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/242 (73%), Positives = 204/242 (84%), Gaps = 14/242 (5%)
Query: 9 PIFKYFLISIFLTLPLLLLLLLFSLKAAVHPPPLPQNVALAESEDLRIRPGYSSYDAYIQ 68
PI KY L+SIFLTLPL+L FS++ + E E +RIRPGY+SYD YIQ
Sbjct: 6 PILKYVLVSIFLTLPLILF---FSIQ-----------LRKPEKELIRIRPGYTSYDYYIQ 51
Query: 69 RQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEAL 128
RQLNKTLNP+LRT W TRDWDRKI+VF++FF DLKR+ LLS +SK LC+GARVGQEVEAL
Sbjct: 52 RQLNKTLNPRLRTIWMTRDWDRKIKVFSRFFQDLKRQGLLSKDSKCLCLGARVGQEVEAL 111
Query: 129 KRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTL 188
KRVGV+DSVG+DLVPYPPLV++GDFH QPFDDETFDFEFSNVFDHALYPDKFV EIERTL
Sbjct: 112 KRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSNVFDHALYPDKFVGEIERTL 171
Query: 189 KPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNA 248
+PGG+CVLHVALS R+DKYSANDLFSV+ LVKLF++SE+V VR VDGFGLDTEVVFRK
Sbjct: 172 RPGGLCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVHVRNVDGFGLDTEVVFRKKR 231
Query: 249 KS 250
S
Sbjct: 232 DS 233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110814|ref|XP_002315644.1| predicted protein [Populus trichocarpa] gi|222864684|gb|EEF01815.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 166/200 (83%), Positives = 182/200 (91%)
Query: 51 SEDLRIRPGYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSN 110
+ DL+IRPGY++Y YIQRQLNKTLNPKLR WTTRDWDRKIQVFA FF LK++ LL N
Sbjct: 40 NSDLKIRPGYTTYKTYIQRQLNKTLNPKLRKIWTTRDWDRKIQVFADFFQVLKQENLLFN 99
Query: 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNV 170
ESKALCIGARVGQEVEAL+R+GVSDSVG+DLVPYPPLV+EGDFHRQPFDD TFDFEFSNV
Sbjct: 100 ESKALCIGARVGQEVEALRRIGVSDSVGMDLVPYPPLVVEGDFHRQPFDDGTFDFEFSNV 159
Query: 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230
FDHAL+PDKFV EIERTLKPGG+CVLHVALS+RADKYSANDL+SVKPLV LF S++VRV
Sbjct: 160 FDHALFPDKFVGEIERTLKPGGICVLHVALSRRADKYSANDLYSVKPLVNLFTNSKVVRV 219
Query: 231 RKVDGFGLDTEVVFRKNAKS 250
RKVDGFGLDTEVVFRK K
Sbjct: 220 RKVDGFGLDTEVVFRKIEKQ 239
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528430|ref|XP_003532806.1| PREDICTED: uncharacterized protein LOC100817246 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 163/197 (82%), Positives = 181/197 (91%)
Query: 51 SEDLRIRPGYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSN 110
+ DLRIRPGYSSYD+YIQRQLNKTLNP+LR WTTRDW+RKI VFA+FF+DLK KKLL+N
Sbjct: 46 TNDLRIRPGYSSYDSYIQRQLNKTLNPRLRKIWTTRDWNRKIPVFARFFEDLKDKKLLNN 105
Query: 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNV 170
SKALCIGARVGQEVEAL+R+GVSDSVG+DLVPYPPLV++GDFH QPFDD TFDFEFSNV
Sbjct: 106 ASKALCIGARVGQEVEALRRIGVSDSVGMDLVPYPPLVVKGDFHNQPFDDGTFDFEFSNV 165
Query: 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230
FDHALYP++FV EIERTLKP GVCVLHVALS+RADKYSANDLFSV+PLV +FK S +V V
Sbjct: 166 FDHALYPERFVGEIERTLKPNGVCVLHVALSRRADKYSANDLFSVEPLVAMFKNSALVHV 225
Query: 231 RKVDGFGLDTEVVFRKN 247
R VDGFGLDTEV FRKN
Sbjct: 226 RSVDGFGLDTEVAFRKN 242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547952|ref|XP_002515033.1| conserved hypothetical protein [Ricinus communis] gi|223546084|gb|EEF47587.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 161/213 (75%), Positives = 185/213 (86%)
Query: 34 KAAVHPPPLPQNVALAESEDLRIRPGYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQ 93
K +PPP + A L+IRPGY +YD+YIQRQLNKTLNPKLR TW TRDWDRK++
Sbjct: 34 KTTTNPPPANDRSSTATITGLKIRPGYKTYDSYIQRQLNKTLNPKLRKTWLTRDWDRKVR 93
Query: 94 VFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDF 153
VFA FF DLK++ L+ N SKAL IGARVGQEVEA KR+GV+DSVGIDLVPYPP VI+GDF
Sbjct: 94 VFAHFFQDLKQENLVFNNSKALSIGARVGQEVEAFKRIGVTDSVGIDLVPYPPSVIKGDF 153
Query: 154 HRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLF 213
H QPFDDETFDFEFSNVFDHAL+P+KFV EIERTLKPGGVCVLHVA+++R+DKYSANDLF
Sbjct: 154 HHQPFDDETFDFEFSNVFDHALFPEKFVSEIERTLKPGGVCVLHVAVNRRSDKYSANDLF 213
Query: 214 SVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246
SV+PL++LFK SE+V VRKVDGFGLDTEVVF+K
Sbjct: 214 SVQPLIQLFKNSELVHVRKVDGFGLDTEVVFKK 246
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|156763854|emb|CAO99129.1| hypothetical protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/250 (68%), Positives = 197/250 (78%), Gaps = 4/250 (1%)
Query: 1 MKATQSKSP--IFKYFLISIFLTLPLLLLLLLFSLKAAVHPPPLPQNVALAESEDLRIRP 58
MK SKS I K I +++PLLL L + +AV DL+IRP
Sbjct: 1 MKEIVSKSSFTISKCIFFGILISIPLLLFLSHRNSFSAVIS--TTTTTISNSDSDLKIRP 58
Query: 59 GYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIG 118
GY++YD+YIQ+QLNKTLNPKLR WTTRDWDRKIQVF+KFF LK + LLS+ SK LCIG
Sbjct: 59 GYATYDSYIQKQLNKTLNPKLRKIWTTRDWDRKIQVFSKFFGQLKTRSLLSDSSKVLCIG 118
Query: 119 ARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPD 178
AR+GQEVEALKRVGVSDS+G+DLVPYPPLV++GDFH QPF+DETFD EFSNVFDHALYP+
Sbjct: 119 ARMGQEVEALKRVGVSDSIGMDLVPYPPLVVKGDFHNQPFEDETFDLEFSNVFDHALYPE 178
Query: 179 KFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGL 238
K+V EIERTLK GG CVLHVALS+RADKYSANDL+SV+PL KLFKRSE+V R +DGFGL
Sbjct: 179 KYVSEIERTLKAGGFCVLHVALSRRADKYSANDLYSVEPLKKLFKRSELVHTRTIDGFGL 238
Query: 239 DTEVVFRKNA 248
DTEVVF K +
Sbjct: 239 DTEVVFTKKS 248
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495254|ref|XP_003516494.1| PREDICTED: uncharacterized protein LOC100811557 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 160/199 (80%), Positives = 181/199 (90%)
Query: 51 SEDLRIRPGYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSN 110
++DLRIRPGYSSY++YIQRQLNKTLNPKLR WTTRDW+RKI VFA+FF+DLK KKLL N
Sbjct: 41 TKDLRIRPGYSSYESYIQRQLNKTLNPKLRKIWTTRDWNRKIPVFARFFEDLKVKKLLKN 100
Query: 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNV 170
SKALCIGARVGQEVEAL+R+GV DSVG+DLVPYPPLV++GDFH QPF ++TFDFEFSNV
Sbjct: 101 TSKALCIGARVGQEVEALRRIGVVDSVGMDLVPYPPLVMKGDFHNQPFQNDTFDFEFSNV 160
Query: 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230
FDHALYP +FV EIERTLKP GVCVLHVALS+RADKYSANDL+SV+PLV+LFKRS +V V
Sbjct: 161 FDHALYPQRFVSEIERTLKPEGVCVLHVALSRRADKYSANDLYSVQPLVELFKRSALVHV 220
Query: 231 RKVDGFGLDTEVVFRKNAK 249
R VDGFGLDTEV FRK +
Sbjct: 221 RSVDGFGLDTEVAFRKKGE 239
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529773|ref|XP_003533462.1| PREDICTED: uncharacterized protein LOC100779661 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 161/202 (79%), Positives = 182/202 (90%), Gaps = 1/202 (0%)
Query: 51 SEDLRIRPGYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLK-RKKLLS 109
++DLRIRPGYSSY++YIQRQLNKTLNPKLR WTTRDWDRKI VFA+FF+DLK KKLL
Sbjct: 44 TKDLRIRPGYSSYESYIQRQLNKTLNPKLRKIWTTRDWDRKIPVFARFFEDLKVNKKLLK 103
Query: 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN 169
N SKALCIGARVGQEVEAL+++GV DSVG+DLVPYPPLV++GDFH QPF ++TFDFEFSN
Sbjct: 104 NTSKALCIGARVGQEVEALRQIGVVDSVGMDLVPYPPLVMKGDFHNQPFQNDTFDFEFSN 163
Query: 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229
VFDHALYP +FV EIERTLKP GVCVLHVALS+RADKYSANDL+SV+PLV+LFKRS +V
Sbjct: 164 VFDHALYPQRFVAEIERTLKPEGVCVLHVALSRRADKYSANDLYSVQPLVELFKRSALVH 223
Query: 230 VRKVDGFGLDTEVVFRKNAKSL 251
VR VDGFGLDTEV FRK + L
Sbjct: 224 VRSVDGFGLDTEVAFRKKGEPL 245
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388494758|gb|AFK35445.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/199 (79%), Positives = 177/199 (88%)
Query: 51 SEDLRIRPGYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSN 110
++DL IRPGY+SY+ YIQRQLNKTLNP+LR WTTRDW+RKI VFA+FF+DLK K LL N
Sbjct: 45 TKDLTIRPGYTSYETYIQRQLNKTLNPRLRKIWTTRDWNRKIPVFARFFEDLKDKSLLQN 104
Query: 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNV 170
SKALCIGARVGQEVEAL+RVGV DSVGIDLVPYPPLV++GDFH QPF DETFDFEFSNV
Sbjct: 105 TSKALCIGARVGQEVEALRRVGVVDSVGIDLVPYPPLVVKGDFHHQPFGDETFDFEFSNV 164
Query: 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230
FDHALYP +FV EIERTLKP GVCVLHVALS+RADKYSANDL+SV+PLV+LF +S +V V
Sbjct: 165 FDHALYPQRFVAEIERTLKPDGVCVLHVALSRRADKYSANDLYSVQPLVELFNKSVLVHV 224
Query: 231 RKVDGFGLDTEVVFRKNAK 249
R VDGFGLDTEV FRK K
Sbjct: 225 RTVDGFGLDTEVAFRKKHK 243
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| TAIR|locus:2023986 | 239 | AT1G24480 [Arabidopsis thalian | 0.782 | 0.841 | 0.726 | 1.9e-74 | |
| TAIR|locus:504955468 | 247 | AT4G24805 [Arabidopsis thalian | 0.789 | 0.821 | 0.676 | 1.4e-69 | |
| TAIR|locus:2149790 | 513 | AT5G01710 [Arabidopsis thalian | 0.529 | 0.265 | 0.367 | 2.4e-18 | |
| TAIR|locus:2052936 | 231 | AT2G16030 [Arabidopsis thalian | 0.494 | 0.549 | 0.379 | 3.2e-17 | |
| TAIR|locus:2116412 | 208 | AT4G26730 [Arabidopsis thalian | 0.447 | 0.552 | 0.387 | 4.7e-16 | |
| TAIR|locus:2084021 | 466 | AT3G53400 "AT3G53400" [Arabido | 0.517 | 0.285 | 0.361 | 1.9e-12 | |
| TAIR|locus:2143478 | 475 | CPUORF47 "conserved peptide up | 0.486 | 0.263 | 0.326 | 1.2e-07 |
| TAIR|locus:2023986 AT1G24480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 146/201 (72%), Positives = 164/201 (81%)
Query: 50 ESEDLRIRPGYSSYDAYIQRQLNKTLNPKLXXXXXXXXXXXKIQVFAXXXXXXXXXXXXS 109
E E +RIRPGY+SYD YIQRQLNKTLNP+L KI+VF+ S
Sbjct: 33 EKELIRIRPGYTSYDYYIQRQLNKTLNPRLRTIWMTRDWDRKIKVFSRFFQDLKRQGLLS 92
Query: 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN 169
+SK LC+GARVGQEVEALKRVGV+DSVG+DLVPYPPLV++GDFH QPFDDETFDFEFSN
Sbjct: 93 KDSKCLCLGARVGQEVEALKRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSN 152
Query: 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229
VFDHALYPDKFV EIERTL+PGG+CVLHVALS R+DKYSANDLFSV+ LVKLF++SE+V
Sbjct: 153 VFDHALYPDKFVGEIERTLRPGGLCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVH 212
Query: 230 VRKVDGFGLDTEVVFRKNAKS 250
VR VDGFGLDTEVVFRK S
Sbjct: 213 VRNVDGFGLDTEVVFRKKRDS 233
|
|
| TAIR|locus:504955468 AT4G24805 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 138/204 (67%), Positives = 160/204 (78%)
Query: 45 NVALAESEDLRIRP-GYSSYDAYIQRQLNKTLNPKLXXXXXXXXXXXKIQVFAXXXXXXX 103
+V E +RIR GYSSY+AYI+ QLNKT NPKL K++VF+
Sbjct: 42 SVTSVADEGIRIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRDWDRKVRVFSTFFRRLS 101
Query: 104 XXXXXSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETF 163
SN+SKAL IGARVGQEV AL+ +GV DSVGIDLVP PPLV++GDFH QPFD+ETF
Sbjct: 102 DRGLLSNQSKALSIGARVGQEVAALRLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETF 161
Query: 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFK 223
DFEFSNVFDHALYP+KFV EIERTLKPGGVCVLHV++S + DKYSANDL SVKPLVKLFK
Sbjct: 162 DFEFSNVFDHALYPEKFVGEIERTLKPGGVCVLHVSISGKTDKYSANDLLSVKPLVKLFK 221
Query: 224 RSEMVRVRKVDGFGLDTEVVFRKN 247
RS++V +RK+DGFGLDTE+VFRKN
Sbjct: 222 RSKVVEMRKIDGFGLDTEIVFRKN 245
|
|
| TAIR|locus:2149790 AT5G01710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 54/147 (36%), Positives = 76/147 (51%)
Query: 92 IQVFAXXXXXXXXXXXXSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEG 151
+Q ++ S ESK LC+ +GQEV +L+ +GV +SVGI PLV+ G
Sbjct: 91 VQFYSSIFQDLIADGYLSPESKTLCVETAIGQEVHSLREIGVKNSVGISKKASRPLVVRG 150
Query: 152 DFHRQPFDDETFDFEFS--NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSA 209
+ H PF+D FDF FS + +L +F EI RTLKP G V+HV A
Sbjct: 151 EGHAIPFEDNAFDFVFSGGDRLGKSLKQLEFADEITRTLKPEGFAVVHVG---------A 201
Query: 210 NDLFSVKPLVKLFKRSEMVRVRKVDGF 236
D +S + LF +V++R +DGF
Sbjct: 202 TDTYSFNSFLDLFNSCRLVKMRDIDGF 228
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| TAIR|locus:2052936 AT2G16030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 52/137 (37%), Positives = 77/137 (56%)
Query: 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN 169
N +KALC+ A G + AL ++G+SD ++LV PLV D H PF D FDF F+
Sbjct: 98 NHTKALCLSAGAGHALMALSQIGLSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTA 157
Query: 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229
AL+P +FV E+ERT++ GG CV+ V D+ +D V+ + +LF S++V
Sbjct: 158 HLAEALFPWQFVEEMERTVRRGGFCVVSV------DECGGDD---VRDIARLFHNSKVVD 208
Query: 230 VRKVDGFGLD-TEVVFR 245
V V G T ++F+
Sbjct: 209 VANVTLEGSKKTSILFK 225
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| TAIR|locus:2116412 AT4G26730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 48/124 (38%), Positives = 69/124 (55%)
Query: 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN 169
N +KALC+ G AL ++G+SD ++LV PLV D H PF D FDF F+
Sbjct: 63 NHTKALCLSDGAGHAPMALSQIGLSDVTAVELVDSIPLVKRADPHNLPFFDRVFDFVFTA 122
Query: 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229
AL+P +FV E+ERT++ GG CV+ V D+ S +D V+ + + F S++V
Sbjct: 123 HLAEALFPWRFVEEMERTVRRGGFCVVAV------DECSGDD---VRDIARFFHNSKIVD 173
Query: 230 VRKV 233
V V
Sbjct: 174 VANV 177
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| TAIR|locus:2084021 AT3G53400 "AT3G53400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 52/144 (36%), Positives = 75/144 (52%)
Query: 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEG-DFHRQ-PFDDETFDFE 166
SN+SKALCIG R V A+ R G+SD V + +P P + F + ++D +F F
Sbjct: 116 SNDSKALCIGRRSVSAVLAMNRQGISD-VSVAYMP-PVFAFKHRKFTSELHYEDASFGFV 173
Query: 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLF-SVKPLVKLFKRS 225
FS + P V EIER LKPGG + V + +D +N+L SV P+ L K S
Sbjct: 174 FSMDLESVAVPASLVYEIERILKPGGTGAMLVGTTSGSD---SNELVRSVSPVSSLLKNS 230
Query: 226 EMVRVRKVDGFGLDTEVVFRKNAK 249
+V V + G VVF+++ +
Sbjct: 231 SVVHVASL---GKQVLVVFKRDGE 251
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| TAIR|locus:2143478 CPUORF47 "conserved peptide upstream open reading frame 47" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 45/138 (32%), Positives = 64/138 (46%)
Query: 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFD-DETFDFEFSN 169
++K LCIG V K +G S G+ P + D++FDF
Sbjct: 129 DAKILCIGQGSDSAVSGFKEMGFSVVQGVPKHPLFSFFSRKHVNELELSGDKSFDFVLCG 188
Query: 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229
DH P V+E+ER LKPGG + V+ + AN L VK + K+SE+VR
Sbjct: 189 DVDHVASPALLVLEMERVLKPGGTGAVLVSTN-------ANRL--VKSVTSGLKQSEIVR 239
Query: 230 VRKVDGFGLDTEVVFRKN 247
V +D F T +VF++N
Sbjct: 240 VNNLDKF---TVIVFKRN 254
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 257 214 0.00085 112 3 11 22 0.37 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 567 (60 KB)
Total size of DFA: 145 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.52u 0.14s 15.66t Elapsed: 00:00:01
Total cpu time: 15.52u 0.14s 15.66t Elapsed: 00:00:01
Start: Thu May 9 18:12:44 2013 End: Thu May 9 18:12:45 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00030700001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (248 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 257 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-15 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 4e-05 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-04 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 6e-04 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 6e-15
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 115 LCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDF 165
L +G G EAL R G + G+DL P P + GD PF DE+FD
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60
Query: 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVL 196
S+ V H P++ + EI R LKPGG V+
Sbjct: 61 VVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
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Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 149 IEGDFH---RQPFDDETFDFEFSNVFDHALY-PDKFVMEIERTLKPGGVCVLHVALSKRA 204
I+GD + +D +FD SN + L PDK + EI R LKPGGV ++ +
Sbjct: 59 IQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSE 118
Query: 205 DKYSANDLFSVKPLV 219
DL + V
Sbjct: 119 LPALLEDLERLYAGV 133
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This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 151 GDFHRQPFDDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVL 196
GD PF D +FD S V H P + + EI R L+PGG V+
Sbjct: 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122
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Length = 241 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 117 IGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFD-DETFDF-EFSNVFDHA 174
IG G + L+ G D G+D P L+ P +D V +H
Sbjct: 29 IGCGTGILLRLLRERGF-DVTGVDPSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVLEHL 87
Query: 175 LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSAN 210
P + ++ LKPGGV ++ L+ + AN
Sbjct: 88 PDPPALLQQLRELLKPGGVLLISTPLADDDARLFAN 123
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This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 149 IEGDFHRQPFDDETFD-----FEFSNVFDHALYPDKFVMEIERTLKPGGV-CVL 196
+ GD PF D +FD F NV D DK + E+ R LKPGG VL
Sbjct: 106 VVGDAENLPFPDNSFDAVTISFGLRNVTD----IDKALKEMYRVLKPGGRLLVL 155
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Length = 238 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.83 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.81 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.76 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.76 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.75 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.75 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.75 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.72 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.71 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.71 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.7 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.7 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.68 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.66 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.66 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.66 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.65 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.61 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.61 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.6 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.59 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.58 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.57 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.57 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.57 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.57 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.57 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.57 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.57 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.54 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.53 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.53 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.52 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.51 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.51 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.5 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.5 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.48 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.48 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.46 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.46 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.45 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.44 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.43 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.43 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.41 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.41 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.4 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.4 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.4 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.38 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.36 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.36 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.33 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.33 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.32 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.32 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.3 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.29 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.29 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.29 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.29 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.28 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.27 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.27 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.26 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.26 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.26 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.25 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.24 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.24 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.24 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.24 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.23 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.22 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.22 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.21 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.21 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.19 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.18 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.17 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.17 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.17 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.16 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.15 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.14 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.14 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.1 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.1 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.1 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.1 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.07 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.07 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.05 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.04 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.04 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.03 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.03 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.03 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.01 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.99 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.99 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.99 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.98 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.97 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.97 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.96 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.95 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.94 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.94 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.93 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.92 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.92 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.92 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.91 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.91 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.91 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.89 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.85 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.85 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.84 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.82 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.81 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.8 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.79 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.76 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.74 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.74 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.7 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.69 | |
| PLN02366 | 308 | spermidine synthase | 98.69 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.68 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.67 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.66 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.65 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.65 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.65 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.65 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.64 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.63 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.6 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.58 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.57 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.57 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.54 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.53 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.53 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.46 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.45 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.45 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.44 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.42 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.42 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.41 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.39 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.37 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.32 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.32 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.27 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.27 | |
| PLN02476 | 278 | O-methyltransferase | 98.25 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.25 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.24 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.23 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.23 | |
| PLN02823 | 336 | spermine synthase | 98.23 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.23 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.19 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.17 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.15 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.15 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.14 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.14 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.12 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 98.11 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.1 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.06 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.03 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.03 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.01 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.01 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.0 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.0 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.99 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.97 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.96 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.96 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.94 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.94 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.92 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.92 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.89 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.89 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.84 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.84 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.82 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.79 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.77 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.76 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.72 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.67 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.66 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.64 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.59 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.56 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.55 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.54 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.5 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.48 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.46 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.43 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.43 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.42 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.42 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.41 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.36 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.33 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.25 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.16 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.11 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.08 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.07 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.99 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.97 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.9 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.78 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.69 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.66 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.64 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.6 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.56 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.46 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.41 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.26 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.21 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.14 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.01 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.93 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.86 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 95.73 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.72 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.53 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.42 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.29 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.22 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.91 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.81 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.69 | |
| PHA01634 | 156 | hypothetical protein | 94.67 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.3 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.91 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.75 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 93.5 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.3 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.23 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 92.99 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 92.92 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.54 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.44 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.41 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 92.26 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.21 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.78 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.74 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 91.49 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 91.38 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 91.32 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.13 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.98 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 90.85 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 89.93 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 89.49 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.36 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 89.24 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 89.16 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 88.73 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.66 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 88.57 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 88.3 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.1 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 85.28 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 85.11 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 84.73 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 84.39 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 84.26 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 84.15 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 83.69 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 83.43 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 82.96 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 82.95 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 81.69 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 81.12 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 80.85 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 80.82 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 80.72 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 80.56 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 80.52 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 80.51 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-20 Score=154.09 Aligned_cols=132 Identities=23% Similarity=0.315 Sum_probs=104.7
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
...+|.+|||||||||.++..+++. +.++|+|+|+|+. ++.++.+|++++||+|++||+|.+ -
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 3457999999999999999999985 6789999999976 367899999999999999999877 5
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCC---C----------------cCcCCC-C------------CcCChhH
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSK---R----------------ADKYSA-N------------DLFSVKP 217 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~---~----------------~~~y~~-~------------~~~~~~~ 217 (257)
.+.++.|++++|+|++|+|||||++++..-... . ...+.. + .+.+.++
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~ 207 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE 207 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999998887641110 0 000000 0 4447888
Q ss_pred HHHhcccCCcEEEEEec-CCCC
Q 025148 218 LVKLFKRSEMVRVRKVD-GFGL 238 (257)
Q Consensus 218 ~~~~f~~~~~~~~~~~~-gf~~ 238 (257)
+.+.+.+.||..+.... .++.
T Consensus 208 l~~~~~~~gf~~i~~~~~~~G~ 229 (238)
T COG2226 208 LKQMIEKAGFEEVRYENLTFGI 229 (238)
T ss_pred HHHHHHhcCceEEeeEeeeeee
Confidence 88999999998888443 5553
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=156.71 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||||||+|.++..+++.+ .+|+|+|++++ .+.+++++++++++++++||+|+| +++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456799999999999999998865 49999999965 356778888888888889999988 699
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCC--------------cCc----CCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------------ADK----YSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~~~----y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+|+.++..+++++.++|||||.+++.+++... .|. .....+++++++.+++++.|+.....
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999999999865321 010 01124679999999999999875544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-19 Score=150.61 Aligned_cols=91 Identities=26% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+|+. ++.++++|++++|+++++||+|+|.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 467889999999999999999875 3569999999966 5689999999999999999999884
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++++.|+.++++|++|+|||||.+++..
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 89999999999999999999999988764
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=146.63 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=104.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
+.++.+|||+|||+|.++..+++. + .++|+|+|+|++ ++.++++|+.++|+++++||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 467889999999999999988875 3 469999999965 24578899999999999999998
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------------CcCC-----------CCCcCChh
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------------DKYS-----------ANDLFSVK 216 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------------~~y~-----------~~~~~~~~ 216 (257)
++ +++|+.++.+++++++|+|||||.+++........ ..+. ...+++.+
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~ 230 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGE 230 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHH
Confidence 84 99999999999999999999999998876432110 0000 02467999
Q ss_pred HHHHhcccCCcEEEEEec-CCCC
Q 025148 217 PLVKLFKRSEMVRVRKVD-GFGL 238 (257)
Q Consensus 217 ~~~~~f~~~~~~~~~~~~-gf~~ 238 (257)
++.+++++.||..+.... +++.
T Consensus 231 el~~ll~~aGF~~~~~~~~~~g~ 253 (261)
T PLN02233 231 ELEKLALEAGFSSAKHYEISGGL 253 (261)
T ss_pred HHHHHHHHCCCCEEEEEEcCCCe
Confidence 999999999998777655 5453
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-18 Score=143.46 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=111.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecC
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDF 153 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~ 153 (257)
|+...|.+....-......++......++.+|||||||+|.++..+++. +..+|+|+|+|+. .+.+.++|+
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 6666666655554455566665555577899999999999999999886 4569999999976 467888998
Q ss_pred CCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCC--------------CcCc-------C-CCC
Q 025148 154 HRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSK--------------RADK-------Y-SAN 210 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~~-------y-~~~ 210 (257)
.+++ ++++||+|+|+ +++|+.++.+++++++++|||||.+++.++... ..|. + ...
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 160 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGA 160 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCc
Confidence 8774 56789999995 999999999999999999999999999865310 0011 0 012
Q ss_pred CcCChhHHHHhcccCCcEE
Q 025148 211 DLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~ 229 (257)
.+.+..++.+++++.||..
T Consensus 161 ~~~~~~~~~~~l~~aGf~v 179 (255)
T PRK14103 161 VVQTPAGYAELLTDAGCKV 179 (255)
T ss_pred CCCCHHHHHHHHHhCCCeE
Confidence 3458899999999999853
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-18 Score=149.37 Aligned_cols=125 Identities=24% Similarity=0.324 Sum_probs=102.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||||||+|.++..+++...++|+|+|+|+. ++.+..+|+.++++++++||+|++ .++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 567899999999999999999864569999999965 367889999999999999999998 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------------CcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------------DKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+|+.++.+++++++|+|||||.+++..+..... ..|....+.+..++.+++++.||..+..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 999999999999999999999999976432110 0111223347889999999999987665
Q ss_pred e
Q 025148 233 V 233 (257)
Q Consensus 233 ~ 233 (257)
.
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 4
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-18 Score=142.59 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC--------------CcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------------PLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
-+|.+|||||||-|.++..|++.| .+|+|+|+++.+ +.+.+...+++....++||+|+| +++||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 478999999999999999999998 599999999883 23455555555555589999999 69999
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCC--------------cC----cCCCCCcCChhHHHHhcccCCcE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKR--------------AD----KYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~~----~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+++|+.+++.+.+.+||||.+++++++... .+ .-....+..+.++..++...++.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 999999999999999999999999875321 11 11111445677888888776664
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-19 Score=125.99 Aligned_cols=82 Identities=38% Similarity=0.550 Sum_probs=71.8
Q ss_pred EEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 115 LCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
||+|||+|..+..+++.+..+++|+|+++. ...+..+|..++|+++++||+|++ ++++|+.++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999999986679999999976 344899999999999999999988 5999999999999
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
+++.|+|||||+++|
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-19 Score=138.51 Aligned_cols=123 Identities=28% Similarity=0.470 Sum_probs=99.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC-----CcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP-----PLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~-----~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
..++.+|||||||+|.++..+++.+. +++|+|+++.. ......+....+.++++||+|+| ++++|+.++.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 46788999999999999999988776 99999999752 33333434455567889999998 5999999999999
Q ss_pred HHHHHhccCCcEEEEEeccCCC-------cCcC-----CCCCcCChhHHHHhcccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVLHVALSKR-------ADKY-----SANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i~~~~~~~-------~~~y-----~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+++.++|||||++++.++.... .|.+ ....+++..++..++++.|+..+.
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999986431 2222 223678999999999999998765
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-17 Score=136.63 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=98.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~ 177 (257)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ...++++|+.++++++++||+|+++ ++++..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 356799999999999999988765 59999999976 2467899999999999999999996 89999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC-----------cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR-----------ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.+++.++.++|||||.++++++.... ......+.+++.+++..++...++.
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCce
Confidence 99999999999999999999765432 1122334667888899888877654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=136.21 Aligned_cols=140 Identities=20% Similarity=0.235 Sum_probs=106.6
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
.++++.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++.+|..++++++++||+|++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4567889999999999999999875 3469999999855 356788999888888899999988
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCc--------------------------C-----CCCCcCChhH
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADK--------------------------Y-----SANDLFSVKP 217 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--------------------------y-----~~~~~~~~~~ 217 (257)
.+++|+.++.++++++.++|||||.+++..+.....+. | ....+.+..+
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 48999999999999999999999999987543211100 0 0013456788
Q ss_pred HHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 218 LVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 218 ~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
+..++++.||..+.... .++..+.++..|
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 99999999998765544 445555555543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=142.21 Aligned_cols=125 Identities=26% Similarity=0.325 Sum_probs=100.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
..+.+|||||||+|.++..+++.+...|+|+|+|+. ++.+..+++.++++ +++||+|+| +++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 457899999999999999999887667999999863 35678888888888 788999998 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCC--------cCcCCCC----CcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------ADKYSAN----DLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~y~~~----~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+|..++..++++++++|||||.+++++..... .+.|... .+.+..++..++.++||..+...+
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 99999999999999999999999987532110 1122211 234888999999999998877664
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-17 Score=136.97 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=97.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC-CCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~~~~fD~V~~-~~ 170 (257)
..+.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.++++|+.+++ +.+++||+|++ ++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 456799999999999999999976 49999999965 3467788887763 56789999988 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC----------------------cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR----------------------ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----------------------~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
++|+.++.++++++.++|||||++++...+... .........++++++.+++++.||.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 999999999999999999999999987654321 0011112346789999999999997
Q ss_pred EEE
Q 025148 229 RVR 231 (257)
Q Consensus 229 ~~~ 231 (257)
.+.
T Consensus 202 ~~~ 204 (255)
T PRK11036 202 IMG 204 (255)
T ss_pred Eee
Confidence 654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-17 Score=137.98 Aligned_cols=136 Identities=20% Similarity=0.259 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...++....+.++.+|||||||+|..+..+++...++|+|+|+|+. .+.+..+|+.+.++++++||+
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEE
Confidence 3444445556788999999999999999888754469999999964 366788899888999999999
Q ss_pred HHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCc--C-----cC---CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 166 EFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRA--D-----KY---SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 166 V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~-----~y---~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|++ +++.|+. ++.+++++++++|||||.+++..+..... + .+ ....+.+..++..++++.||..+..
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 998 5888886 88899999999999999999986532210 0 00 0113457889999999999987766
Q ss_pred ec
Q 025148 233 VD 234 (257)
Q Consensus 233 ~~ 234 (257)
.+
T Consensus 201 ~d 202 (263)
T PTZ00098 201 KD 202 (263)
T ss_pred Ee
Confidence 54
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-17 Score=140.51 Aligned_cols=129 Identities=20% Similarity=0.204 Sum_probs=100.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
..++++|||||||+|.++..++..+...|+|+|+|+. .+.+...++.+++.. ++||+|+| ++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 3567899999999999999988877668999999874 234566677777754 47999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------cCcCCC----CCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------ADKYSA----NDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~y~~----~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
++|..++..++++++++|||||.+++++...+. .+.|.. ..+.+..++..+++++||..+.......
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 999999999999999999999999998542111 111211 1345889999999999999988776444
|
Known examples to date are restricted to the proteobacteria. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=126.36 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=103.6
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCC--CCCCCchhHHHH-HHhhcc
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQ--PFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~--~~~~~~fD~V~~-~~l~h~ 174 (257)
..+++|.+|||+|||.|.+...|.+...++.+|+|++++ .+.++++|+.+- .|+|++||.|+. .+++++
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 346889999999999999999999977789999999987 578999999864 589999999766 699999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCC---------------------cCcCCCC-CcCChhHHHHhcccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKR---------------------ADKYSAN-DLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------------~~~y~~~-~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
.+|+++++|+.|+ |...+++.|+..+ .|.-..| ++.+..+++.+.++.++.....
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 9999999999777 6688999887432 2222222 6779999999999999987766
Q ss_pred ec
Q 025148 233 VD 234 (257)
Q Consensus 233 ~~ 234 (257)
..
T Consensus 166 ~~ 167 (193)
T PF07021_consen 166 VF 167 (193)
T ss_pred EE
Confidence 53
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-16 Score=145.91 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=101.6
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.+.++.+|||||||+|..+..+++...++|+|+|+|+. .+.+..+|+.+.++++++||+|+| +++
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 34678899999999999999998865569999999955 356788999988888889999999 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCc------CcC--C-CCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRA------DKY--S-ANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~y--~-~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+|+.++.+++++++|+|||||.+++..+..... ..+ . ...+++..++.+++++.||..+..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 999999999999999999999999986532210 000 0 114568888999999999987644
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=134.32 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=91.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEe
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEG 151 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~ 151 (257)
|+...+.+....-......++....+.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.+..+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 5555555444333334445554545577889999999999999999875 5569999999975 4667888
Q ss_pred cCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 152 DFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 152 d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+.++. ++++||+|+++ +++|+.++.++++++.++|||||.+++.++.
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 887764 45689999995 9999999999999999999999999998753
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-17 Score=135.05 Aligned_cols=90 Identities=27% Similarity=0.268 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CC------CcEEEecCCCC------------------CCcEEEecCCCCCCCCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GV------SDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~------~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~f 163 (257)
..+.++||++||||.++..+.+. +. .+|+.+|+|+. ...++++|++++||++++|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 56789999999999999998874 22 68999999977 2678999999999999999
Q ss_pred hHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|.... -.+..+.+++++++|++|+|||||++.+..
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99644 689999999999999999999999988653
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=129.95 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFV 181 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l 181 (257)
++.+|||+|||+|.++..+++....+|+|+|+|+. ....+++|++++|+++++||+|++. +++|+.++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 47899999999999999998873359999999987 2346789999999999999999885 999999999999
Q ss_pred HHHHHhccCC
Q 025148 182 MEIERTLKPG 191 (257)
Q Consensus 182 ~~~~r~Lkpg 191 (257)
+|++|+|||.
T Consensus 131 ~e~~RvLkp~ 140 (226)
T PRK05785 131 AEFTRVSRKQ 140 (226)
T ss_pred HHHHHHhcCc
Confidence 9999999994
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-16 Score=132.23 Aligned_cols=125 Identities=27% Similarity=0.369 Sum_probs=99.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CC--cEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PP--LVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~--~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
-.|.+|||||||+|+++..++..|...|+|+|.+.. .. ..+-..++++|. .++||+|+| +|+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 368899999999999999999998889999999865 11 122235566666 688999999 799
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCC--------cCcCCCC----CcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------ADKYSAN----DLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~y~~~----~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.|..+|...+.+++..|++||.+++.+-.-+. ...|... .+-+...+..+++++||..++.++
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 99999999999999999999999998632111 2334332 223899999999999999998876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=124.48 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=90.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+. ++.+...|+.+.+++ ++||+|+|+ +++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 4568999999999999999999764 9999999975 256677888777764 579999985 777
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC--CCCcCChhHHHHhcccCCcEEEEEecC
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS--ANDLFSVKPLVKLFKRSEMVRVRKVDG 235 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~--~~~~~~~~~~~~~f~~~~~~~~~~~~g 235 (257)
|+. +...+++++.++|||||++++..........+. ....++..++.+.|+ +|..+....+
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 765 567899999999999999665432211111111 224568889999998 6665555444
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-16 Score=128.85 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=86.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC---------------------CcEEEecCCCCCCCCCchhHHHH-
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP---------------------PLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~---------------------~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
|.+|||+|||+|.++..|++.|. +|+|+|+++.+ +.+.+.+.+.. .+.||.|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 47899999999999999999885 99999999761 12233333332 245999888
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC------------------cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR------------------ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~------------------~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.++||+.||++++..+.+.|||||.+++++-+... ......+.+.++.++..++...+..
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 69999999999999999999999999999733111 1122223566899999999887653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=133.36 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=99.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~ 174 (257)
.++.+|||||||+|.++..+++. +..+|+++|+|+. ++.++.+|+.++++++++||+|++ ++++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 46789999999999999888774 4569999999865 467788999999999999999888 599999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCCcC--c-CCCC--CcCChhHHHHhcccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKRAD--K-YSAN--DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~-y~~~--~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.++++++++++|+|||||.+++..+.....| . +... .+.+.+++.+++++.||..+...
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 9999999999999999999988654321111 0 1110 23478999999999999876654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=121.64 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
.++++|||+|||+|.++..+++.+. +|+|+|+|+. .+.....|+...+++ ++||+|+++ +++|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 3567999999999999999999764 9999999975 234555666655554 579999885 7887
Q ss_pred cc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCc--CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 174 AL--YPDKFVMEIERTLKPGGVCVLHVALSKRADK--YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+. +...++++++++|||||++++.......... ......++..++.+.|.. +..+...
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 74 5568999999999999996665432211111 112345789999999986 4444433
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=123.51 Aligned_cols=122 Identities=23% Similarity=0.325 Sum_probs=95.4
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
.+|||||||+|..+..+++. +..+|+|+|+|+. .+.+...|..+.+++ ++||+|++ ++++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999875 4579999999965 246777888666665 47999988 69999
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCC----cCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKR----ADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+.++..+++++.++|||||.+++..+..+. ........+.+..++.+++.+.||..+...+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 999999999999999999999998753321 1111122455788899999999998766553
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=117.13 Aligned_cols=126 Identities=19% Similarity=0.132 Sum_probs=92.8
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...++++.+|||+|||+|..+..++. .+.++|+|+|+++. ++.+..+|+.+.+. +++||+|++
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEE
Confidence 34455689999999999999998886 35679999999975 36788889888776 778999998
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE----ecCCCCc-eEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK----VDGFGLD-TEVV 243 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~----~~gf~~~-~~vv 243 (257)
+. +.++..++++++++|||||.+++..+.. ....+..+-+..|+..... ..|.+-. -.++
T Consensus 119 ~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (187)
T PRK00107 119 RA---VASLSDLVELCLPLLKPGGRFLALKGRD------------PEEEIAELPKALGGKVEEVIELTLPGLDGERHLVI 183 (187)
T ss_pred cc---ccCHHHHHHHHHHhcCCCeEEEEEeCCC------------hHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEE
Confidence 64 3467789999999999999999886422 2455666666667653322 2354433 3445
Q ss_pred EEc
Q 025148 244 FRK 246 (257)
Q Consensus 244 ~~k 246 (257)
.||
T Consensus 184 ~~~ 186 (187)
T PRK00107 184 IRK 186 (187)
T ss_pred Eec
Confidence 555
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-15 Score=122.88 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=93.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHHH-Hhhccc
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHAL 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~ 175 (257)
..+.+|||+|||+|.++..+++. +..+++|+|+++. ++.++.+|+.+.++++++||+|+++ +++|+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 34578999999999999999886 4567999999965 3578889999999888999999884 999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCc----C--CCCCcCChhHHHHhcccC
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADK----Y--SANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----y--~~~~~~~~~~~~~~f~~~ 225 (257)
++.++++++.++|||||.+++.++....... + ....+++...+..++.+.
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS 168 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 9999999999999999999998865432100 0 112445677777777765
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-15 Score=119.89 Aligned_cols=91 Identities=30% Similarity=0.493 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-c-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKR-V-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~-~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 169 (257)
+++.+|||+|||+|.++..+++ . +..+++|+|+|+. ++.+.++|+.+++ ++ ++||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 4578999999999999999994 3 4579999999976 4788999999977 55 789999994
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++|+.++..+++++.+.||+||.+++..+.
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998764
|
... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-15 Score=118.27 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=98.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEe
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEG 151 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~ 151 (257)
|+...+......-.+-..+++....+....+|.|+|||+|..+..|+++ +...++|+|-|++ +..+..+
T Consensus 3 W~p~~Yl~F~~eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~a 82 (257)
T COG4106 3 WNPDQYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEA 82 (257)
T ss_pred CCHHHHHHHHHhccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecc
Confidence 4444444444444556677777777778889999999999999999986 7889999999977 5688899
Q ss_pred cCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 152 DFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 152 d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
|+.++. ++...|++++| +++++++..+.+..+...|.|||++.+++|+.
T Consensus 83 Dl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 83 DLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999886 45679999997 99999999999999999999999999999853
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=120.10 Aligned_cols=126 Identities=25% Similarity=0.345 Sum_probs=96.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+.++.+|||+|||+|.++..+++. +.++++|+|+++. .+.+..+|+.+.++++++||+|++
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS 93 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence 344567889999999999999999875 3569999999965 356777888888888899999988
Q ss_pred -HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC-c-------------C--CCCCcCChhHHHHhcccCCcEEE
Q 025148 169 -NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD-K-------------Y--SANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 169 -~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~-------------y--~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
.+++|+.++..+++++.++|||||.+++..+...... . + .....+....+..++.+.||..+
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 172 (241)
T PRK08317 94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDI 172 (241)
T ss_pred echhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCce
Confidence 5999999999999999999999999998875321100 0 0 00122344567778888887644
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-15 Score=126.17 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=95.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ++.+..+|+.++++++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 568899999999999988777664 3 347999999865 3567788999999988999999985
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-----------cCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-----------ADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+++|..+..+++++++|+|||||++++....... .+.......++..++..++.+.||..+..
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 8999999999999999999999999997432111 00000112346778889999888876543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=118.31 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=89.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCCCC-C
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQPFD-D 160 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~~~-~ 160 (257)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+. .+.+.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5678999999999999999999887 9999999976 134578888877643 3
Q ss_pred CchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc-CCcEEEEE
Q 025148 161 ETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR-SEMVRVRK 232 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~-~~~~~~~~ 232 (257)
+.||.|+. .+++|++ ...+.++.+.+.|||||++++.+-.......-...+.++..++.++|.. .++..+..
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEee
Confidence 57999887 4778886 3345899999999999986666432221111112245789999999975 35555444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=125.15 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHA 174 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~ 174 (257)
++++|||+|||+|..+..+++.+. +|+|+|+|+. ++.+...|+...++ +++||+|++. +++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 456999999999999999998764 9999999976 34556677766555 6789999985 88887
Q ss_pred c--cHHHHHHHHHHhccCCcEEEEEeccCCCc--CcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 175 L--YPDKFVMEIERTLKPGGVCVLHVALSKRA--DKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 175 ~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
. +...+++++.++|||||++++..+..... ..-.....++..++.++|....+....
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEe
Confidence 5 55678999999999999977755432211 111123557899999999885554443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-15 Score=118.85 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
-+++++||+|||.|..+.+|++.|. +|+++|+|+. .+.....|+.+..++ +.||+|++. +++|
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 3567999999999999999999987 9999999975 456788898888775 579999985 7877
Q ss_pred cc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCc--CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 174 AL--YPDKFVMEIERTLKPGGVCVLHVALSKRADK--YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+. ...++++.+...++|||++++.+........ -.....+.+.++...|...++....+.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E~ 170 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNED 170 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEcc
Confidence 76 3456889999999999998886543222111 122355688999999997666554443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=119.49 Aligned_cols=139 Identities=24% Similarity=0.239 Sum_probs=106.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
..++.+|||+|||+|..+..+++.. ..+++++|+++. .+.+..+|+.+.++++++||+|++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 3467899999999999999998864 479999999854 356778888888877789999987
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC-------------------cCCC------------CCcCChhH
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD-------------------KYSA------------NDLFSVKP 217 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------------~y~~------------~~~~~~~~ 217 (257)
.+++|..++..+++++.+.|+|||.+++......... .+.. ..+++..+
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 5899999999999999999999999887643211100 0000 13457788
Q ss_pred HHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 218 LVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 218 ~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
+.+++.++||..+.... ++++...++.+|
T Consensus 209 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 99999999998777766 666655666555
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-15 Score=112.51 Aligned_cols=88 Identities=27% Similarity=0.405 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC----------------CCcEEEecC-CCCCCCCCchhHHHH-H-
Q 025148 110 NESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY----------------PPLVIEGDF-HRQPFDDETFDFEFS-N- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~----------------~~~~~~~d~-~~~~~~~~~fD~V~~-~- 169 (257)
++.+|||+|||+|.++..+++ .+..+|+|+|+|+. ++.+.++|+ ...... +.||+|++ .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 46679999999966 677899999 444433 45999887 4
Q ss_pred Hhhcc---ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHA---LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~---~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++++ .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23333 466789999999999999999976
|
... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-14 Score=118.69 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=75.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHHH-h
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSNV-F 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~-l 171 (257)
+++++.+|||+|||+|.++..+++. ..+.|+|+|+++. ++.++++|+.+.+ +.+++||+|+|+. .
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 4578889999999999999999886 2368999999963 5778999998853 6678999999863 3
Q ss_pred hcccc-----------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 172 DHALY-----------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 172 ~h~~~-----------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++..+ .+.+++++.++|||||.+++.+..
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 33222 146889999999999999997753
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-15 Score=125.62 Aligned_cols=130 Identities=25% Similarity=0.231 Sum_probs=86.3
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~ 161 (257)
.+..++.+..+++|.+|||||||.|.++..+++..+++|+|+.+|++ .+.+...|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 34444445667999999999999999999999974469999999966 35677788777653
Q ss_pred chhHHHH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCC-------------cCc--CCCCCcCChhHHHHhcc
Q 025148 162 TFDFEFS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKR-------------ADK--YSANDLFSVKPLVKLFK 223 (257)
Q Consensus 162 ~fD~V~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------~~~--y~~~~~~~~~~~~~~f~ 223 (257)
+||.|+| .++||+ .+...+++++.++|||||.++++...... ..+ |....+-+..++...+.
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~ 206 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE 206 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh
Confidence 8999999 799999 46789999999999999999987532110 001 22224446777777777
Q ss_pred cCCcEEE
Q 025148 224 RSEMVRV 230 (257)
Q Consensus 224 ~~~~~~~ 230 (257)
+.++...
T Consensus 207 ~~~l~v~ 213 (273)
T PF02353_consen 207 DAGLEVE 213 (273)
T ss_dssp HTT-EEE
T ss_pred cCCEEEE
Confidence 7887644
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=116.47 Aligned_cols=137 Identities=23% Similarity=0.246 Sum_probs=103.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.++.+|||+|||+|..+..+++... .+++++|+++. .+.+..+|+.+.++++++||+|++ .+++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 4678999999999999999988643 58999999854 357788888888887889999988 4899
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCC-------------------cCcCCC------------CCcCChhHHHHh
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------ADKYSA------------NDLFSVKPLVKL 221 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------~~~y~~------------~~~~~~~~~~~~ 221 (257)
|..++..+++++.+.|+|||.+++....... ...+.. ..+++..++..+
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAM 197 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999986432110 000000 124477889999
Q ss_pred cccCCcEEEEEec-CCCCceEEEEE
Q 025148 222 FKRSEMVRVRKVD-GFGLDTEVVFR 245 (257)
Q Consensus 222 f~~~~~~~~~~~~-gf~~~~~vv~~ 245 (257)
+.+.||..+.... +++....++.|
T Consensus 198 l~~aGf~~~~~~~~~~~~~~~~~~~ 222 (223)
T TIGR01934 198 LKEAGFEEVRYRSLTFGVAAIHVGK 222 (223)
T ss_pred HHHcCCccceeeeeecceeeEEEec
Confidence 9999998665554 44544555554
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=117.08 Aligned_cols=129 Identities=26% Similarity=0.245 Sum_probs=94.2
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
........+++|++|||||||.|.++.++++.-+++|+|+++|++ ++.+...|..+.. +.|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---ccc
Confidence 333445667999999999999999999999975569999999976 3455556655543 459
Q ss_pred hHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCC-cC--------cCC--CCCcCChhHHHHhcccCCcEE
Q 025148 164 DFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKR-AD--------KYS--ANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 164 D~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~--------~y~--~~~~~~~~~~~~~f~~~~~~~ 229 (257)
|-|+| ..+||+.. ...+++.++++|+|||.+++++-.... .+ .|- ...+-+...+.+...+.++..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v 218 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVV 218 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence 99999 79999985 889999999999999999988632211 11 111 112335566777777777754
Q ss_pred EE
Q 025148 230 VR 231 (257)
Q Consensus 230 ~~ 231 (257)
..
T Consensus 219 ~~ 220 (283)
T COG2230 219 LD 220 (283)
T ss_pred eh
Confidence 43
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=109.90 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|..+..++.. +..+|+|+|+|+. ++.++++|+.+++ .+++||+|+|+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRAL-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhh--
Confidence 3789999999999999988765 4568999999975 4678888988864 3578999999764
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc---CCcEEEEEec
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR---SEMVRVRKVD 234 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~---~~~~~~~~~~ 234 (257)
.+....++.+.++|||||.+++..... ...++..+.++ .|+..+....
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~~~------------~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKGKK------------YLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcCCC------------cHHHHHHHHHhhhhcCceEeeccc
Confidence 345678888999999999999875311 23444444444 5666555444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-14 Score=114.69 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=78.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCc-EEEecCCCCC-CCCCchhHHHHH-Hhhc
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPL-VIEGDFHRQP-FDDETFDFEFSN-VFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~-~~~~d~~~~~-~~~~~fD~V~~~-~l~h 173 (257)
..+||||||+|..-.++...+.++|+++|.++. .+. ++.++.++++ ++|+++|.|++. +++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 467999999999999888777789999999977 344 8899999998 899999999996 9999
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++.+.++++.|+|+|||++++..
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999999999999999999864
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-15 Score=107.30 Aligned_cols=80 Identities=29% Similarity=0.332 Sum_probs=51.4
Q ss_pred EEECCCCCHHHHHHHHc-CCCcEEEecCCCCCC---------------cEEEecCCCCC--CCCCchhHHHH-HHhhccc
Q 025148 115 LCIGARVGQEVEALKRV-GVSDSVGIDLVPYPP---------------LVIEGDFHRQP--FDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~V~~-~~l~h~~ 175 (257)
||||||+|.++..+.+. +..+++|+|+|+..+ .....+..+.. ...++||+|++ ++++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999886 567999999998832 12222222221 11258999988 6999999
Q ss_pred cHHHHHHHHHHhccCCcEE
Q 025148 176 YPDKFVMEIERTLKPGGVC 194 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l 194 (257)
++.++++.+++.|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=112.76 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=88.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCCCCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~~~~ 160 (257)
..++++|||+|||.|..+..|++.|. +|+|+|+|+. .+.+.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35678999999999999999999886 9999999966 1345678888775432
Q ss_pred -CchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc-CCcEEEEEe
Q 025148 161 -ETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR-SEMVRVRKV 233 (257)
Q Consensus 161 -~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~-~~~~~~~~~ 233 (257)
..||+|+. .+++|++ ...+.++.+.++|||||.+++.+-.......-...+.++..++.++|.. .++..+...
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~ 191 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQ 191 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeec
Confidence 57999887 4778886 3457899999999999975543321111000111245689999999986 466555543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.5e-14 Score=117.59 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=93.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...++.+|||+|||+|..+..+++. +.++++|+|+|+. ++.++++|+.+.+++ .+|+|+
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEe
Confidence 3457789999999999999988874 4679999999965 347788899888765 479888
Q ss_pred HH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCC-----------------cCcCC-------------CCCcCC
Q 025148 168 SN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKR-----------------ADKYS-------------ANDLFS 214 (257)
Q Consensus 168 ~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------------~~~y~-------------~~~~~~ 214 (257)
++ +++|+. ++.+++++++|+|||||.+++..+.... ...+. ....++
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 84 888886 4578999999999999999998542110 01111 113468
Q ss_pred hhHHHHhcccCCcEEEEE
Q 025148 215 VKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 215 ~~~~~~~f~~~~~~~~~~ 232 (257)
.+++.++++++||..+..
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 888888999998876544
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=112.03 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=86.7
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCC----CCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQ----PFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~ 167 (257)
..++++.+|||+|||+|.++..+++. +.++|+|+|+++. ++..+.+|..+. ++. ++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 44578899999999999999999885 4458999999973 467777887642 222 4589887
Q ss_pred HHHhhccccH---HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 168 SNVFDHALYP---DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 168 ~~~l~h~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++ +.++ ..++++++++|||||.+++.++.....+....... .++..+.+++.||..+...+
T Consensus 147 ~d----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~--~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 147 QD----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEI--FKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred EC----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHH--HHHHHHHHHHcCCeEEEEEc
Confidence 54 2233 34689999999999999997654322222222111 13455889999998887776
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.2e-14 Score=117.99 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=73.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH---cCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKR---VGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
+.++.+|||+|||+|..+..+++ .+..+++|+|+|+. .+.+.++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 46788999999999999988876 25679999999975 357788888887765 4899888
Q ss_pred H-Hhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALY--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ +++|+.+ ...++++++++|||||.+++..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5 8888864 4578999999999999999975
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=110.26 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=93.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCC-C-CCCCCchhHHHHH-Hhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHR-Q-PFDDETFDFEFSN-VFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~-~-~~~~~~fD~V~~~-~l~h~~~ 176 (257)
++++++|||+|||+|.++..+++....+++|+|+++. .+.++.+|+.+ + ++++++||+|+++ +++|+.+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 3567899999999999999998765568999999965 45678888865 4 4778899999884 9999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCC---------------c----CcCC---CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKR---------------A----DKYS---ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------~----~~y~---~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.++++++.|+++ .+++.+|+... . ..+. ...+++.+++.+++++.|+..+...
T Consensus 91 ~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 91 PEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred HHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999988765 44555543210 0 0111 1246799999999999999876654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=116.94 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------CCcEEEe
Q 025148 87 DWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------PPLVIEG 151 (257)
Q Consensus 87 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------~~~~~~~ 151 (257)
-|......++..+..=+....++++++|||+|||+|.++..+++. + ...|+++|+++. ++..+.+
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~ 188 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIE 188 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEEC
Confidence 344444444333322223344688999999999999999999986 2 458999999963 5667778
Q ss_pred cCCCC---CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 152 DFHRQ---PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 152 d~~~~---~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
|+... ....++||+|++++. ...+...++.++.+.|||||.++|.............+..|+ +++ +.+++.+|.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L~~~GF~ 265 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKLKKEGLK 265 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHHHHcCCc
Confidence 87542 223457999999764 233444566799999999999999653222111121112222 233 778888888
Q ss_pred EEEEec--CCCCc
Q 025148 229 RVRKVD--GFGLD 239 (257)
Q Consensus 229 ~~~~~~--gf~~~ 239 (257)
.+..++ -|..+
T Consensus 266 ~~e~v~L~Py~~~ 278 (293)
T PTZ00146 266 PKEQLTLEPFERD 278 (293)
T ss_pred eEEEEecCCccCC
Confidence 777665 45544
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=125.12 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCC--CCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFH--RQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~--~~~~~~~~fD~V~~~-~l~ 172 (257)
.++.+|||+|||+|.++..+++.. .+|+|+|+++. ++.++++|+. ..++++++||+|+|+ +++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 456799999999999999999875 49999999976 3457778885 457788899999995 899
Q ss_pred cccc--HHHHHHHHHHhccCCcEEEEEeccCCCc---Cc-CCCCCcCChhHHHHhcccCCcEEE
Q 025148 173 HALY--PDKFVMEIERTLKPGGVCVLHVALSKRA---DK-YSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 173 h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~~-y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
|+.+ ..+++++++|+|||||++++........ .. .....+.....+.++|.++++...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 9986 4689999999999999999875322111 11 122233467788889988876543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-13 Score=117.40 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=74.1
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc-C---CCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV-G---VSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
+.+.....+.+|||+|||+|.++..+++. + ..+++|+|+|+. ++.+..+|..++|+++++||+|++
T Consensus 78 l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 78 LAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred HHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE
Confidence 33333345678999999999999988764 2 247999999976 467889999999999999999987
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
... ...++++.|+|||||.+++.+|...
T Consensus 158 ~~~------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 158 IYA------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ecC------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 421 1346899999999999999887654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-13 Score=107.48 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=89.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+++. .+.+..+|..+.. .++||+|+++ .+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 3467899999999999999998765 8999999977 2455677765543 4589999986 4443
Q ss_pred ccc---------------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 174 ALY---------------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 174 ~~~---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
..+ ..++++++.++|||||.+++..+... ...++..++++.|+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------ChHHHHHHHHhCCCeEEEE
Confidence 332 34678999999999999998764322 3667888889989865444
Q ss_pred ec-CCCCceEEEE
Q 025148 233 VD-GFGLDTEVVF 244 (257)
Q Consensus 233 ~~-gf~~~~~vv~ 244 (257)
.. |+-+.+..+.
T Consensus 164 ~~~~~~~~~~~~~ 176 (179)
T TIGR00537 164 AERGLFFEELFAI 176 (179)
T ss_pred EEeecCceEEEEE
Confidence 43 6655544444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-13 Score=122.69 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=77.1
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
+..++....++++.+|||||||+|.++..+++...++|+|+|+|++ .+.+...|..++ +++||.|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEE
Confidence 3334444456788999999999999999998865569999999977 234455555543 4689999
Q ss_pred HH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+++|+. ++..+++++.++|||||.+++++.
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 88 5999985 457899999999999999999864
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-13 Score=110.86 Aligned_cols=88 Identities=25% Similarity=0.397 Sum_probs=71.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
+.++.+|||+|||+|..+..+++. +..+++|+|+|+. .+.+..+|+.+ ++++++||+|++ ++++|+.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 356789999999999999999886 5679999999976 35678888888 888999999998 5999995
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEe
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+..++++++.|++ ++.+++..
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 3467888999987 45666654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-13 Score=115.91 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCCCeEEEECCCCCHH----HHHHHHc-C-----CCcEEEecCCCC----------------------------------
Q 025148 109 SNESKALCIGARVGQE----VEALKRV-G-----VSDSVGIDLVPY---------------------------------- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~----~~~l~~~-~-----~~~v~gvD~s~~---------------------------------- 144 (257)
.++.+|+|+|||+|.. +..+++. + ..+|+|+|+|+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999973 4445443 1 358999999964
Q ss_pred --------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++.+.++|+.+.++++++||+|+| ++++|+.++ .+++++++++|||||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 245677888888777889999999 799999744 479999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=110.35 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=94.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCC-CCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQP-FDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~-~~~~~fD~V~~-~~l 171 (257)
..++.+|||||||+|.++..+.+.+ .+++++|+++. .+.+...+..+.+ ..+++||+|++ +++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 3567899999999999999988865 58999999966 1345555555543 34578999887 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCc------------------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRA------------------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~------------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|..++..+++.+.+.|+|||.+++..+..... .......+++..++..++.+.|+..+...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999987532110 00011245688899999999999876554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=107.03 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=92.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCC-CCchhHHHH-HHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD-DETFDFEFS-NVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~-~~~fD~V~~-~~l~ 172 (257)
.+.+|||+|||+|.++..+++.+ .+++|+|+++. .+.+...|+.+.+.. .++||+|++ ++++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 47799999999999999888865 47999999864 244556666665543 378999988 5999
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCC------------cCcC------CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKR------------ADKY------SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~------------~~~y------~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|+.++..+++++.++|+|||.+++..++... ...+ ....+++..++.+++.+.|+..+..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 9999999999999999999999988754321 0000 0113457788999999999876543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-13 Score=112.73 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecC-CCCC--CCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDF-HRQP--FDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~-~~~~--~~~~~fD~V~~~~ 170 (257)
++.+|||+|||+|..+..+++. +..+|+|+|+|+. ++.++++|+ ..++ +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999875 5568999999975 456788888 6665 7788999987752
Q ss_pred -hhcc------c--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 171 -FDHA------L--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 171 -l~h~------~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
..+. . ....+++++.++|||||.+++.++... ....+.+.+.+.|+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG-----------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH-----------HHHHHHHHHHhCccccc
Confidence 2111 1 146789999999999999999875433 24456666777776433
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=109.68 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+. ++.+...+...++.++++||+|+|+ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46679999999999998888752 2 358999999976 2455666767777778899999995 9
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCC-------------c-CcC-------CCCCcCChhHHHHhcccCCc
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKR-------------A-DKY-------SANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~-------------~-~~y-------~~~~~~~~~~~~~~f~~~~~ 227 (257)
++|+.++ .++++++.|+++ |.+++....... . ..+ +....|+.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 9999875 469999999998 444444311100 0 111 11256788888888888 77
Q ss_pred E
Q 025148 228 V 228 (257)
Q Consensus 228 ~ 228 (257)
.
T Consensus 216 ~ 216 (232)
T PRK06202 216 R 216 (232)
T ss_pred e
Confidence 5
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=112.21 Aligned_cols=128 Identities=23% Similarity=0.337 Sum_probs=90.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCc--EEEecCCCCCCC-CCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPL--VIEGDFHRQPFD-DETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~--~~~~d~~~~~~~-~~~fD~V~~~ 169 (257)
+...+++.+|||+|||+|.++...++.|..+|+|+|+++. .+. ....-......+ .++||+|++|
T Consensus 157 e~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 157 EKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred HHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 4445689999999999999999999999889999999976 122 001111111222 3589999999
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
.+-++. .++..++.+.|||||+++++--..+ ..+.+...+.+.||.......--+ +..++++|
T Consensus 237 ILA~vl--~~La~~~~~~lkpgg~lIlSGIl~~-----------q~~~V~~a~~~~gf~v~~~~~~~e-W~~i~~kr 299 (300)
T COG2264 237 ILAEVL--VELAPDIKRLLKPGGRLILSGILED-----------QAESVAEAYEQAGFEVVEVLEREE-WVAIVGKR 299 (300)
T ss_pred hhHHHH--HHHHHHHHHHcCCCceEEEEeehHh-----------HHHHHHHHHHhCCCeEeEEEecCC-EEEEEEEc
Confidence 765432 2677899999999999999863322 366788888888887666554322 34566665
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-12 Score=109.13 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCCCHHHHH-HH-Hc-CCCcEEEecCCCC-----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEA-LK-RV-GVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~-l~-~~-~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
..+.+|+|||||.|.++.. ++ .. +.++++|+|++++ ++.+..+|+.+..-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 4678999999998855433 33 33 5678999999965 478888988876434578999999
Q ss_pred HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCceEEEE
Q 025148 169 NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLDTEVVF 244 (257)
Q Consensus 169 ~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~~~vv~ 244 (257)
.+++++ .++.++++.+.+.|+|||.+++.....-+. .+|..-+.. ..+ ||....... +-..-++|+.
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~------~LYp~v~~~-~~~--gf~~~~~~~P~~~v~Nsvi~~ 272 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA------FLYPVVDPC-DLR--GFEVLSVFHPTDEVINSVIIA 272 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEecccchHh------hcCCCCChh-hCC--CeEEEEEECCCCCceeeEEEE
Confidence 988887 589999999999999999999987422111 112111111 112 777777665 3232367777
Q ss_pred Ecccc
Q 025148 245 RKNAK 249 (257)
Q Consensus 245 ~k~~~ 249 (257)
||++.
T Consensus 273 r~~~~ 277 (296)
T PLN03075 273 RKPGG 277 (296)
T ss_pred EeecC
Confidence 87653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=99.73 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=89.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCC-cEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 111 ESKALCIGARVGQEVEALKRVGVS-DSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
..+|||+|||+|.++..|++.+.. ..+|+|.|+. .+.+.+.|+.+..+..+.||+|+- .++.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 349999999999999999998643 4999999976 378899999988888888999866 4443
Q ss_pred ccc--------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 173 HAL--------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 173 h~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.+. .+...+..+.+.|+|||+++|..++. +.+++...|...+|+....+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~------------T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF------------TKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc------------cHHHHHHHHhcCCeEEEEeec
Confidence 332 12335678899999999999988754 688999999999998877764
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-14 Score=101.98 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=65.8
Q ss_pred EEEECCCCCHHHHHHHHcC----CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-H-Hhhc
Q 025148 114 ALCIGARVGQEVEALKRVG----VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-N-VFDH 173 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l~h 173 (257)
|||+|||+|..+..+.+.. ..+++|+|+|+. .+.+.++|+.++++.+++||+|++ . +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998752 369999999966 568999999999988899999988 4 6999
Q ss_pred ccc--HHHHHHHHHHhccCCc
Q 025148 174 ALY--PDKFVMEIERTLKPGG 192 (257)
Q Consensus 174 ~~~--~~~~l~~~~r~LkpgG 192 (257)
+.+ .+++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 773 4578899999999998
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-13 Score=125.13 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCC--CCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQP--FDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~~~~fD~V~~~-~ 170 (257)
.++++|||+|||+|..+..+++. +..+++|+|+|+. ++.++++|..+++ +++++||+|+++ +
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46789999999999999888874 6679999999975 2356778888877 788999999875 7
Q ss_pred hhcc-------------ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHA-------------LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~-------------~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+||+ .++.+++++++++|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7765 2567899999999999999999764
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-12 Score=96.47 Aligned_cols=89 Identities=24% Similarity=0.188 Sum_probs=68.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCC-CCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHR-QPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~ 169 (257)
.+.++.+|||+|||+|.++..+++. +..+|+|+|+++. ++.+..+|... .+...++||+|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 3456789999999999999999885 5579999999865 34556666554 23334689998774
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++ ..++++++++.|||||.+++.+
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 3332 3588999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=102.84 Aligned_cols=95 Identities=26% Similarity=0.348 Sum_probs=72.8
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSNV 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~ 170 (257)
...+.++.+|||+|||+|.++..+++. +.++|+|+|+|+. ++.++++|+.+.+ +++++||+|+++.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 344578899999999999999888775 3458999999985 4667778876643 4567899998852
Q ss_pred ---------hhccc---cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 ---------FDHAL---YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 ---------l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++|.. +.+.+++++.++|+|||.+++...
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 22221 236789999999999999999764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-12 Score=109.56 Aligned_cols=123 Identities=21% Similarity=0.328 Sum_probs=85.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
..++.+|||+|||+|.++...++.|..+|+|+|+++. ...+.... ......++||+|++|.+.+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHH
Confidence 5678899999999999999999998889999999987 11222222 2233458899999884432
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcc
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKN 247 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~ 247 (257)
+. ..++..+.+.|+|||+++++--... ....+.+.|++ |+.......--+ +..++++|+
T Consensus 237 vL--~~l~~~~~~~l~~~G~lIlSGIl~~-----------~~~~v~~a~~~-g~~~~~~~~~~~-W~~l~~~Kk 295 (295)
T PF06325_consen 237 VL--LELAPDIASLLKPGGYLILSGILEE-----------QEDEVIEAYKQ-GFELVEEREEGE-WVALVFKKK 295 (295)
T ss_dssp HH--HHHHHHCHHHEEEEEEEEEEEEEGG-----------GHHHHHHHHHT-TEEEEEEEEETT-EEEEEEEE-
T ss_pred HH--HHHHHHHHHhhCCCCEEEEccccHH-----------HHHHHHHHHHC-CCEEEEEEEECC-EEEEEEEeC
Confidence 21 2577889999999999999853222 46778888876 887665554222 345777764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-12 Score=105.26 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH--Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN--VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l 171 (257)
+.++.+|||+|||+|.++..+++.+..+++++|+++. .+.+..+|+.+. +++++||+|++| ..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 4667899999999999999998876559999999975 245667777653 456789999987 22
Q ss_pred hccc--------------------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 172 DHAL--------------------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 172 ~h~~--------------------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+.. ....+++++.++|||||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1110 134678899999999999998654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-12 Score=107.08 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=83.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEE-----ecC---CCCCCCCCchhHHHHHHhhccccHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIE-----GDF---HRQPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~-----~d~---~~~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+|+..+.... .+. ..++..+.+||+|++|...+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 4578899999999999999888877657999999987221100 001 11122223799998874322 1346
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
+++++.++|||||.++++..... ....+...+.+.||........-+ ...++++|
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~~-----------~~~~v~~~l~~~Gf~~~~~~~~~~-W~~~~~~~ 249 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILEE-----------QADEVLEAYEEAGFTLDEVLERGE-WVALVGKK 249 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcHh-----------hHHHHHHHHHHCCCEEEEEEEeCC-EEEEEEEe
Confidence 78999999999999999853221 466788889999987665544222 23455554
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-12 Score=104.24 Aligned_cols=121 Identities=14% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.+.+ ++||+|++ +++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHH
Confidence 4678999999999999999988654 9999999966 3457777877665 78999887 688
Q ss_pred hccc--cHHHHHHHHHHhccCCcEEEEEeccCC--------CcC----cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 172 DHAL--YPDKFVMEIERTLKPGGVCVLHVALSK--------RAD----KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 172 ~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~--------~~~----~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|+. +...+++++.+++++++++.+...... ..+ .......++..++.+++++.||..+...
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 8875 456789999999987766555321100 000 0111245588999999999998766554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-12 Score=103.70 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|..+..+++. + .++|+++|+++. .+.+..+|..+....+++||+|+++
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 467889999999999999988875 2 458999999965 2567788887654456789999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++|++ +++.+.|||||++++.+
T Consensus 150 ~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh------HHHHHhcCcCcEEEEEE
Confidence 666554 47889999999998865
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=98.92 Aligned_cols=110 Identities=25% Similarity=0.394 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------C--CcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------P--PLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~--~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. . +.+..+|..+ ++.+++||+|+++ .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 467899999999999999999874 69999999976 1 4566677655 3445589998875 2
Q ss_pred hhc---------------------cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 171 FDH---------------------ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 171 l~h---------------------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+.+ ......+++++.++|||||.+++.++... ..+.+..++.+.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~-----------~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT-----------GEDEVLEYLEKLGFEA 168 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC-----------CHHHHHHHHHHCCCee
Confidence 111 11245688999999999999988775321 3567888999999865
Q ss_pred EE
Q 025148 230 VR 231 (257)
Q Consensus 230 ~~ 231 (257)
..
T Consensus 169 ~~ 170 (188)
T PRK14968 169 EV 170 (188)
T ss_pred ee
Confidence 44
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-12 Score=108.84 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC----------------CcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP----------------PLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++.. +.+...+. .+..+++||+|++|.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 45678999999999999999888776799999999761 22233332 2334678999999743
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
.+ ...+++.++.++|||||.++++..... ...++...+++.
T Consensus 235 ~~--~l~~ll~~~~~~LkpgG~li~sgi~~~-----------~~~~v~~~~~~~ 275 (288)
T TIGR00406 235 AE--VIKELYPQFSRLVKPGGWLILSGILET-----------QAQSVCDAYEQG 275 (288)
T ss_pred HH--HHHHHHHHHHHHcCCCcEEEEEeCcHh-----------HHHHHHHHHHcc
Confidence 22 234788999999999999999764322 355666666654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=100.08 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=78.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
+.++.+|||+|||+|.++..+++. +..+|+++|+++. .+.+..+|.. .++ .++||+|+++ .
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 457789999999999999998875 4569999999976 2455566653 233 3579999875 3
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
.+ ....+++++.+.|||||++++...... +..++.+++++.|+..+
T Consensus 107 ~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 107 GG---NLTAIIDWSLAHLHPGGRLVLTFILLE-----------NLHSALAHLEKCGVSEL 152 (187)
T ss_pred cc---CHHHHHHHHHHhcCCCeEEEEEEecHh-----------hHHHHHHHHHHCCCCcc
Confidence 33 345788999999999999998753221 45677788888887443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=106.51 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=87.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
.+.++.+|||||||+|.++..+++. +..+++++|..+. ++.++.+|+.+.++++ +|+|++ +
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 3567789999999999999999885 6679999997311 3567888988766654 698755 6
Q ss_pred HhhccccH--HHHHHHHHHhccCCcEEEEEecc--CCCcCcC--------------CCCCcCChhHHHHhcccCCcEEEE
Q 025148 170 VFDHALYP--DKFVMEIERTLKPGGVCVLHVAL--SKRADKY--------------SANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 170 ~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~--~~~~~~y--------------~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++..+. .+++++++++|||||++++.... ......+ ......+.+++.+++++.||..+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 88877543 47899999999999999887431 1111100 011223467788888888887664
Q ss_pred E
Q 025148 232 K 232 (257)
Q Consensus 232 ~ 232 (257)
.
T Consensus 304 ~ 304 (306)
T TIGR02716 304 M 304 (306)
T ss_pred e
Confidence 3
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-12 Score=105.23 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC---CCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP---FDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V~~~~ 170 (257)
...++||||||+|.++..+++. +..+++|+|+++. ++.++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999885 6679999999965 4677888887643 4566889887652
Q ss_pred -hhcccc--------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 -FDHALY--------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 -l~h~~~--------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
..+... ...+++++.++|||||.+++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 111111 156899999999999999998743
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=98.42 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHH-HHHHhhccccHHHHHHHHHHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFE-FSNVFDHALYPDKFVMEIERT 187 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~~~~~~l~~~~r~ 187 (257)
.++..|.|+|||.+.++..+.+ + .+|...|+...+..+..+|+.+.|++++++|++ +|-+|.. .|...++.|..|+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~Rv 147 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRV 147 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHhe
Confidence 3456999999999999977543 2 379999999999999999999999999999995 4434432 3566899999999
Q ss_pred ccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 188 LKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 188 LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
|||||.|.|....++ +-+.+.+.+.+++.||........-..-+...|+|...
T Consensus 148 LK~~G~L~IAEV~SR---------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 148 LKPGGILKIAEVKSR---------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp EEEEEEEEEEEEGGG----------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred eccCcEEEEEEeccc---------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 999999999764332 22578888999999998777655434345677777553
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=97.54 Aligned_cols=89 Identities=26% Similarity=0.375 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
++++|||+|||+|.++..+++. +..+|+++|+++. .+.+...|..+. .++++||+|+|| -++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 6789999999999999999986 4447999999976 255777777653 347889999998 222
Q ss_pred ccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 173 HAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.-. -.++++++..+.|||||.+++...
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 221 246788999999999999987653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=100.36 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=80.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~ 165 (257)
...+.++.+|||+|||+|.++..++.. +..+|+++|+++. ++.++.+|..+. +..++.||.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 334578899999999999999988764 3468999999965 345666777553 223467999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
|+++. ...++..+++++.+.|||||.+++.....+ +.......+++.|+
T Consensus 115 V~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~l~~~g~ 163 (198)
T PRK00377 115 IFIGG--GSEKLKEIISASWEIIKKGGRIVIDAILLE-----------TVNNALSALENIGF 163 (198)
T ss_pred EEECC--CcccHHHHHHHHHHHcCCCcEEEEEeecHH-----------HHHHHHHHHHHcCC
Confidence 88742 234667899999999999999998765332 35566777777776
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-12 Score=97.88 Aligned_cols=89 Identities=30% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCchhHHHHH--H
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFSN--V 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~--~ 170 (257)
|.+|||+|||+|.++..+++.+..+++|+|+++. .+.++++|..+.. +++++||+|++| .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999877569999999976 3578889988775 788999999997 3
Q ss_pred hhccc-------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHAL-------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~-------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+.. ...++++++.+.|||||.+++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22211 235789999999999999999876
|
... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=102.17 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=69.1
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
..+.++.+|||||||+|..+..+++. + .++|+++|+++. ++.++.+|......+++.||+|++
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYV 151 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEE
Confidence 34578899999999999999988875 2 359999999966 467888898776666788999987
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ..+++ .+.+.+.|||||++++..
T Consensus 152 ~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 4 55433 346778999999999865
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=106.04 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
..++|||+|||+|.++..+++. +..+|+++|+|+. ...+...|.... .+++||+|+|| .+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3468999999999999999886 5568999999964 223555565442 35789999997 5554
Q ss_pred -----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 174 -----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 174 -----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
....+++++++.+.|||||.+++.....- .| +..+.+.|... ..+....+|.
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l---~y-------~~~l~~~Fg~~--~~la~~~~f~ 330 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL---PY-------PDLLDETFGSH--EVLAQTGRFK 330 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC---Ch-------HHHHHHHcCCe--EEEEeCCCEE
Confidence 23457899999999999999998764221 22 34555666543 3333445665
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=101.93 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=84.8
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH-----
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN----- 169 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~----- 169 (257)
.+|||+|||+|.++..++.. +..+|+|+|+|+. .+.++++|+.+ ++++++||+|++|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 68999999999999999985 4569999999976 25677788765 3445579999886
Q ss_pred ---------Hhhcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcc-cCCc
Q 025148 170 ---------VFDHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFK-RSEM 227 (257)
Q Consensus 170 ---------~l~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~-~~~~ 227 (257)
+..|- ....++++++.+.|+|||++++.+... ....+.+++. +.++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~------------q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW------------QQKSLKELLRIKFTW 262 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc------------HHHHHHHHHHhcCCC
Confidence 11121 134567899999999999999988532 2556777777 4566
Q ss_pred EEEEEec-CCCCceEEEEE
Q 025148 228 VRVRKVD-GFGLDTEVVFR 245 (257)
Q Consensus 228 ~~~~~~~-gf~~~~~vv~~ 245 (257)
..+.... -.+.++.++.+
T Consensus 263 ~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 263 YDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ceeEEecCCCCCceEEEEE
Confidence 5544433 33334555543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=107.07 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=83.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
....+++.+|||+|||+|.++..++..+ .+++|+|+++. .+.+..+|+.++++++++||+|++|
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence 3345788899999999999998877665 49999999975 2467889999999888899999886
Q ss_pred -H------hh-c-c-ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 -V------FD-H-A-LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 -~------l~-h-~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
- .. + . ....++++++.++|||||++++.+|.. .++..++++.|+
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------~~~~~~~~~~g~ 309 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------IDLESLAEDAFR 309 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------CCHHHHHhhcCc
Confidence 1 11 1 1 124678999999999999999988732 244556677776
|
This family is found exclusively in the Archaea. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=102.43 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH---
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN--- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~--- 169 (257)
..+.+|||+|||+|.++..+++. +..+++|+|+++. ++.+..+|+.+ ++++++||+|++|
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCC
Confidence 34569999999999999999985 5569999999965 25677888766 4567889999875
Q ss_pred ----Hhhcc--------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 170 ----VFDHA--------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 170 ----~l~h~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
..+++ .....+++++.++|+|||.+++.... ....++.+++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------------~~~~~~~~~l~~~ 232 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------------DQGEAVRALFEAA 232 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------------cHHHHHHHHHHhC
Confidence 11111 11236789999999999999997631 1356788889888
Q ss_pred CcEEEEEec
Q 025148 226 EMVRVRKVD 234 (257)
Q Consensus 226 ~~~~~~~~~ 234 (257)
++..+....
T Consensus 233 gf~~v~~~~ 241 (251)
T TIGR03534 233 GFADVETRK 241 (251)
T ss_pred CCCceEEEe
Confidence 886655443
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=97.32 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. .+.+..+| ++..+++||+|++ +++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchh
Confidence 4678999999999999999998764 7999999865 24455666 3344678999988 588
Q ss_pred hcccc--HHHHHHHHHHhccCCcEEEEEeccCC---------CcC----cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 172 DHALY--PDKFVMEIERTLKPGGVCVLHVALSK---------RAD----KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 172 ~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~---------~~~----~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|+.+ ...+++++.+.+++++++ ...+... ..+ .-.....++..++.+++.+.||......
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIF-TFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEE-EECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 88764 456778888876544433 3222110 000 0011134577889999999988755543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=96.16 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=91.9
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQP 157 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~ 157 (257)
.....++.+||+.|||.|..+.+|++.|. +|+|+|+|+. .+.+.++|+.+++
T Consensus 38 ~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 38 KLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred hcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 33345678999999999999999999987 8999999954 3467888998886
Q ss_pred CC---CCchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC-CcEEE
Q 025148 158 FD---DETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS-EMVRV 230 (257)
Q Consensus 158 ~~---~~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~-~~~~~ 230 (257)
.. .+.||+|+- .++.+++ ...+.++.+.+.|+|||.+++.+-..+.. .-...+-.+..++..+|... .+..+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~-~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK-SQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC-CCCCCCcCCHHHHHHhccCCceEEEe
Confidence 42 257999877 5888886 34568899999999999988776422211 11111234788999999764 55544
Q ss_pred EE
Q 025148 231 RK 232 (257)
Q Consensus 231 ~~ 232 (257)
..
T Consensus 196 ~~ 197 (226)
T PRK13256 196 DS 197 (226)
T ss_pred ee
Confidence 43
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-11 Score=99.80 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCc----------EEEecCCCC--CCCCCchh
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPL----------VIEGDFHRQ--PFDDETFD 164 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~----------~~~~d~~~~--~~~~~~fD 164 (257)
..+.+++......+-.++||+|||||..+..+...-. +++|+|+|.+++. ..+++.... ...++.||
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 3445555555455567999999999999999988654 8999999987321 122222211 13467899
Q ss_pred HHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCC----CcCChhHHHHhcccCCcEEEEEe
Q 025148 165 FEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSAN----DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 165 ~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~----~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|.+ +|+.++.+.+.++......|+|||.+.+++-.....+.|.-. +..+..-+...+...|+..+...
T Consensus 191 Li~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 191 LIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred chhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 9988 699999999999999999999999999998654433322211 23356667788888888766544
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-11 Score=98.78 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=77.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
-.++||+|||.|.++..|+.+.. +++++|+|+. ++.+.++++.+. .++++||+|+. .++.++.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSS
T ss_pred cceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCC
Confidence 36899999999999999999864 8999999966 578889988775 47789999755 68888875
Q ss_pred ---HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 177 ---PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 177 ---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
...++..+...|+|||.+++..........+. +.+..+.+..+|.+.
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wg--h~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWG--HAAGAETVLEMLQEH 171 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT---S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccC--cccchHHHHHHHHHH
Confidence 34688999999999999999876432211121 233678888888775
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=106.50 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCC-CCchhHHHHH--H
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFD-DETFDFEFSN--V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~-~~~fD~V~~~--~ 170 (257)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+. ++.++++|+.+..++ +++||+|+|| .
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 45679999999999999988864 5679999999976 356788887654332 4579999886 2
Q ss_pred hh----cc--------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC
Q 025148 171 FD----HA--------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 171 l~----h~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
+. +. ....++++++.+.|+|||.+++++... ..+.+.+++.+.|
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------Q~e~V~~ll~~~G 397 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------QGAAVRGVLAENG 397 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc------------HHHHHHHHHHHCC
Confidence 11 00 012356677888999999999987432 3678889999888
Q ss_pred cEEEEEec-CCCCceEEEEEc
Q 025148 227 MVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 227 ~~~~~~~~-gf~~~~~vv~~k 246 (257)
+..+.... -.+.++.++.++
T Consensus 398 f~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 398 FSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred CcEEEEEEcCCCCcEEEEEEE
Confidence 86554443 334445555443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-11 Score=108.19 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 170 (257)
..+..+||||||+|.++..+++. +...++|+|+++. ++.++++|+..+ .++++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln- 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH- 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-
Confidence 44569999999999999999985 6679999999854 567888888654 5788999998764
Q ss_pred hhccccH-----------HHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYP-----------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~-----------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.++| ..+++++.|+|||||.+.+.+-
T Consensus 200 ---FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 200 ---FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ---CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3333 5789999999999999999873
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=101.10 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--H
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~ 170 (257)
++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.++++|+.+ ++++++||+|++| .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4579999999999999999985 4569999999966 25677888754 2455689999886 1
Q ss_pred -----hhcc-------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC
Q 025148 171 -----FDHA-------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 171 -----l~h~-------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
+.++ .....+++++.+.|+|||++++.+.. +...+.+++.+.+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-------------~~~~v~~~~~~~~ 266 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-------------SMEALEEAYPDVP 266 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHHhCC
Confidence 1111 11246788999999999999998842 2457888888888
Q ss_pred cEEEEEec
Q 025148 227 MVRVRKVD 234 (257)
Q Consensus 227 ~~~~~~~~ 234 (257)
+.......
T Consensus 267 ~~~~~~~~ 274 (284)
T TIGR03533 267 FTWLEFEN 274 (284)
T ss_pred CceeeecC
Confidence 87655444
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=98.76 Aligned_cols=113 Identities=20% Similarity=0.328 Sum_probs=82.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH--
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-- 169 (257)
..++.+|||+|||+|.++..++.. +..+++|+|+|+. ++.+..+|+.+. +++++||+|++|
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 356779999999999999999885 4579999999965 356677776442 335789999874
Q ss_pred Hh-----h--------------------ccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc
Q 025148 170 VF-----D--------------------HALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 170 ~l-----~--------------------h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~ 224 (257)
.+ + .+....++++++.+.|||||++++.+... ....+.+++.+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~------------~~~~~~~~l~~ 252 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD------------QGEAVRALLAA 252 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch------------HHHHHHHHHHh
Confidence 11 1 11223567888999999999999976311 35668888888
Q ss_pred CCcEEEEEe
Q 025148 225 SEMVRVRKV 233 (257)
Q Consensus 225 ~~~~~~~~~ 233 (257)
.|+..+...
T Consensus 253 ~gf~~v~~~ 261 (275)
T PRK09328 253 AGFADVETR 261 (275)
T ss_pred CCCceeEEe
Confidence 888755544
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-11 Score=98.81 Aligned_cols=86 Identities=24% Similarity=0.234 Sum_probs=67.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.++++.+|||||||+|..+..+++.. .++|+++|+++. ++.++.+|..+.....++||+|+++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 35788999999999999999998863 346999999965 4677888887654445689998774
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+ ..+.+.+.|||||++++.+
T Consensus 154 ~~~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccc------ccHHHHHhcCcCcEEEEEE
Confidence 4443 3456889999999999865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=96.32 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=95.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHH-HHHHhhccccHHHHHHHHHHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFE-FSNVFDHALYPDKFVMEIERT 187 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~~~~~~l~~~~r~ 187 (257)
.....|.|+|||.+.++. ... ..|+..|+...+..++.+|+.++|++|++.|++ +|-++. -.|...++.|++|+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~Ri 253 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER-HKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRI 253 (325)
T ss_pred cCceEEEecccchhhhhh---ccc-cceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHH
Confidence 445689999999998876 223 389999999999999999999999999999994 554443 34677899999999
Q ss_pred ccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEccc
Q 025148 188 LKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNA 248 (257)
Q Consensus 188 LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~ 248 (257)
||+||.+.|..-.+ ++-+..++.+.+...||........-..-+.+.|+|-.
T Consensus 254 Lk~gG~l~IAEv~S---------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 254 LKPGGLLYIAEVKS---------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred hccCceEEEEehhh---------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 99999999975322 22367788999999999755544322222456666644
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-11 Score=103.16 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC--------------------CcEEEecCCCCCCCCCchhHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------------------PLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~--------------------~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+.. +.+...|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 57899999999999999999876 499999999761 23344454432 578999988
Q ss_pred HHhhccccHH--HHHHHHHHhccCCcEEEEEeccCCC----------cCcCC---CCCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKR----------ADKYS---ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~y~---~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++|+++.. .+++.+.+ +.+||.++...|.... ...+. ..++++.+++.+++++.||....
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 5888987543 35566654 4555554433332110 00111 11344789999999999987543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=96.93 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=82.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 169 (257)
...++|||+|||+|..+..++++ ...+++|||+++. .+.++++|+.++. ....+||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34789999999999999999997 6589999999976 5788899988763 344579999997
Q ss_pred --Hhh---------------cc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 170 --VFD---------------HA--LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 170 --~l~---------------h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.+. |. .+.++.++...+.|||||.+.+..+..+ ..++..++++.++.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er------------l~ei~~~l~~~~~~ 188 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER------------LAEIIELLKSYNLE 188 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH------------HHHHHHHHHhcCCC
Confidence 221 11 1456788999999999999999876332 45566777765553
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-11 Score=97.40 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=88.6
Q ss_pred eEEEECCCCCHHHHHHHHc-CC--CcEEEecCCCCC--------------CcEEEecCC----CCCCCCCchhHHHHH-H
Q 025148 113 KALCIGARVGQEVEALKRV-GV--SDSVGIDLVPYP--------------PLVIEGDFH----RQPFDDETFDFEFSN-V 170 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~-~~--~~v~gvD~s~~~--------------~~~~~~d~~----~~~~~~~~fD~V~~~-~ 170 (257)
+||+||||.|....-+.+. +. ..|+++|.|+.. +.....|+. .-+.+.+++|+|.+- +
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999888774 33 689999999871 122222322 225667899987663 4
Q ss_pred hhccc--cHHHHHHHHHHhccCCcEEEEEeccC--------CCcCcCCCC----------CcCChhHHHHhcccCCcEEE
Q 025148 171 FDHAL--YPDKFVMEIERTLKPGGVCVLHVALS--------KRADKYSAN----------DLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 171 l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~--------~~~~~y~~~----------~~~~~~~~~~~f~~~~~~~~ 230 (257)
|..+. ....++++++++|||||.+++..... ......+.+ ++|+.+++..+|.++||..+
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~ 233 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV 233 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchh
Confidence 44333 45678999999999999999974210 001111111 66799999999999999766
Q ss_pred EEecCCCCceEEEEEccc
Q 025148 231 RKVDGFGLDTEVVFRKNA 248 (257)
Q Consensus 231 ~~~~gf~~~~~vv~~k~~ 248 (257)
..... -+.+|.++++
T Consensus 234 ~~~~~---~rl~vNr~k~ 248 (264)
T KOG2361|consen 234 QLEVD---CRLLVNRKKQ 248 (264)
T ss_pred cccce---eeeeeehhcc
Confidence 54321 1334555544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-11 Score=105.75 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=65.7
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
+++|||+|||+|.++..+++. +..+|+++|+|+. .+.+...|... .+++++||+|+|| -
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 469999999999999999885 5679999999965 12444555533 2345689999998 4
Q ss_pred hhcc---c--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHA---L--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~---~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++.. . ...+++++++++|||||.+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3322 1 23578899999999999999986
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=99.16 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=80.8
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--H--
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--V-- 170 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~-- 170 (257)
.+|||+|||+|.++..++.. +..+|+|+|+|+. ++.++++|+.+ .+++++||+|+|| .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 68999999999999999875 5679999999966 25677888754 2345689999886 1
Q ss_pred ---h-------hcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 171 ---F-------DHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 171 ---l-------~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+ .|- ....++++++.+.|+|||.+++.+.. +...+.++|.+.++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-------------~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-------------SRVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHhhCCCE
Confidence 1 111 11246789999999999999998742 234577888888887
Q ss_pred EEEEec
Q 025148 229 RVRKVD 234 (257)
Q Consensus 229 ~~~~~~ 234 (257)
+.....
T Consensus 281 ~~~~~~ 286 (307)
T PRK11805 281 WLEFEN 286 (307)
T ss_pred EEEecC
Confidence 765554
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=94.41 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=65.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.+.++.+|||+|||+|..+..+++.. .+++++|+++. ++.+..+|..+...+.++||+|+++ .
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 35678899999999999998888765 38999999865 3566777765432234789998874 5
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+++ .+++.+.|+|||.+++...
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 5433 4567899999999999774
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=83.87 Aligned_cols=85 Identities=34% Similarity=0.483 Sum_probs=69.6
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHH-Hhhc-c
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSN-VFDH-A 174 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-~l~h-~ 174 (257)
+++|+|||.|..+..+.+....+++++|+++. .+.+...|..+... ..+++|+|+++ .+++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999999999999998855569999999864 34566777776653 55789999885 7777 6
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.....+++.+.+.|+|||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78888999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=93.72 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=62.6
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHhhcccc
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~ 176 (257)
.++|+|||+|..+..+++... +|+|+|+|+. ...+...+..++--.++++|+|+|.---|..|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 899999999988888888754 9999999976 12222223333333389999999963345566
Q ss_pred HHHHHHHHHHhccCCc-EEEEEe
Q 025148 177 PDKFVMEIERTLKPGG-VCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG-~l~i~~ 198 (257)
.+++.++++|+||++| .+.+..
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEE
Confidence 7789999999999876 666644
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-10 Score=95.43 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC------CcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP------PLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFVM 182 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~------~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l~ 182 (257)
...++||||+|.|..+..++..- .+|+++|.|+.+ -.+...+..++.-.+.+||+|.| |+++...+|...++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 35689999999999999998854 389999999761 12223344444444568999988 99999999999999
Q ss_pred HHHHhccCCcEEEEEe
Q 025148 183 EIERTLKPGGVCVLHV 198 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~~ 198 (257)
+|++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999999885
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-10 Score=95.55 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=83.6
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEe
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEG 151 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~ 151 (257)
+..++......++.+||..|||.|..+..|+++|. +|+|+|+|+. .+.+.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 33333333456778999999999999999999986 9999999965 2356788
Q ss_pred cCCCCCCCC-CchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc
Q 025148 152 DFHRQPFDD-ETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 152 d~~~~~~~~-~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~ 224 (257)
|+.+++-.+ ++||+|+-. .++-++ ...+..+.+.++|||||.+++.+-.......-...+-.+.+++.++|..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~ 181 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGP 181 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTT
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcC
Confidence 998876544 479999763 444443 5677899999999999995444322111111122233488999999993
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-10 Score=91.66 Aligned_cols=90 Identities=20% Similarity=0.087 Sum_probs=64.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCC-CCCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHR-QPFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 170 (257)
..++.+|||+|||+|.++..+++. +..+|+++|+++. ++.++.+|+.+ ++.....+|.++..
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~- 116 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE- 116 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-
Confidence 457889999999999999988764 4569999999975 34566666643 11111224544332
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...+..++++++.+.|||||.+++..+.
T Consensus 117 --~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 117 --GGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 1234568999999999999999998753
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-09 Score=86.38 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCC-eEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------C-CcEEEecCCCC--CC------CCCc
Q 025148 109 SNES-KALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------P-PLVIEGDFHRQ--PF------DDET 162 (257)
Q Consensus 109 ~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~-~~~~~~d~~~~--~~------~~~~ 162 (257)
...+ +|||||||||..+.++++. +.....-.|.++. + ..-+..|+... +. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3344 5999999999999999985 6666677777654 1 11123333332 22 2468
Q ss_pred hhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC---------------CCCcCChhHHHHhccc
Q 025148 163 FDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS---------------ANDLFSVKPLVKLFKR 224 (257)
Q Consensus 163 fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~---------------~~~~~~~~~~~~~f~~ 224 (257)
||.|+| |++|-.+ .-+.+++.+.++|++||.|++.-|........+ ...+-+.+++.++..+
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 999998 6665443 345678999999999999999877543211000 1134467778888888
Q ss_pred CCcEEEEEecCCCCceEEEEEc
Q 025148 225 SEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 225 ~~~~~~~~~~gf~~~~~vv~~k 246 (257)
.|+.....++--.--..+||+|
T Consensus 183 ~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCccCcccccCCCCeEEEEeC
Confidence 8876555443111112456664
|
The function of this family is unknown. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=103.64 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--H
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~ 170 (257)
++.+|||+|||+|.++..++.. +..+|+|+|+|+. .+.++.+|+.+ .+++++||+|+|| .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 3468999999999999988764 6679999999965 24566777643 2345689999885 1
Q ss_pred h-------------hcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 171 F-------------DHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 171 l-------------~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
+ .|- ....++++++.++|+|||.+++.+... ..+.+.+++.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------q~~~v~~~~~~~ 284 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------QEEAVTQIFLDH 284 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------hHHHHHHHHHhc
Confidence 1 111 112346788889999999999987421 366778888887
Q ss_pred CcEEEE
Q 025148 226 EMVRVR 231 (257)
Q Consensus 226 ~~~~~~ 231 (257)
++..+.
T Consensus 285 g~~~~~ 290 (506)
T PRK01544 285 GYNIES 290 (506)
T ss_pred CCCceE
Confidence 775443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-10 Score=90.68 Aligned_cols=94 Identities=23% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCcEEEecCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------------------
Q 025148 145 PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------- 203 (257)
Q Consensus 145 ~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------- 203 (257)
++.++++|+.++|+++++||+|++. +++|+.++.+++++++|+|||||.+++.......
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVA 106 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhh
Confidence 4788999999999999999999885 8999999999999999999999999887532210
Q ss_pred -----cCcCCC-----CCcCChhHHHHhcccCCcEEEEEec-CCCC
Q 025148 204 -----ADKYSA-----NDLFSVKPLVKLFKRSEMVRVRKVD-GFGL 238 (257)
Q Consensus 204 -----~~~y~~-----~~~~~~~~~~~~f~~~~~~~~~~~~-gf~~ 238 (257)
...|.. ..+.+.+++.+++++.||..+.... +++.
T Consensus 107 ~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 107 TVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred HHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 001110 1445888899999999998776554 5553
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-10 Score=99.65 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------CCcEEEecCCCC----CCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------PPLVIEGDFHRQ----PFDD 160 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------~~~~~~~d~~~~----~~~~ 160 (257)
++.+|||+|||.|..+......+...++|+|++.. ...++.+|.... .+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78899999999999888888877779999999955 123456665533 1333
Q ss_pred --CchhHHHHH-Hhhcccc----HHHHHHHHHHhccCCcEEEEEeccC
Q 025148 161 --ETFDFEFSN-VFDHALY----PDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 161 --~~fD~V~~~-~l~h~~~----~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
..||+|-|. ++|+.-. ...+++.+.+.|||||+++.++|+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 589999884 7777653 3458899999999999999999753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-10 Score=95.43 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcccc-
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALY- 176 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~- 176 (257)
.+++|||+|||+|.++..++.. +..+|+|+|+++. .+.++++|+.+... +++||+|++| -+.|...
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 4579999999999998888774 3469999999977 35678888887653 4689999997 4544321
Q ss_pred -------------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 177 -------------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 177 -------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
..+.+......|+|+|.+.+..-... -|+ .-.+..+..+++.+.||.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---~y~--~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---YYD--GTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc---ccc--ccCCHHHHHHHHHhcCcE
Confidence 23566777889999997777532111 111 123788899999999885
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=95.57 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCc---hh-H
Q 025148 109 SNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDET---FD-F 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~---fD-~ 165 (257)
.++.+|||+|||+|..+..+.+.. ..+++|+|+|+. .+..+++|+.+ .+++... .+ +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 467899999999999999998763 459999999976 12456888876 3444332 22 3
Q ss_pred HHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 166 EFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 166 V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ +++.|+. +..+++++++++|+|||.+++.+..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 344 3666665 3456899999999999999998743
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=93.16 Aligned_cols=120 Identities=26% Similarity=0.407 Sum_probs=82.7
Q ss_pred eEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------C---CcEEEecCCCCCCCCCchhHHHHH--Hhhcc
Q 025148 113 KALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------P---PLVIEGDFHRQPFDDETFDFEFSN--VFDHA 174 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~---~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~ 174 (257)
+|||+|||+|.++..++.. +..+|+|+|+|+. . +.++++|..+ +.. ++||+|+|| .+..-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCc
Confidence 7999999999999999986 5579999999986 1 2334444332 222 379999887 32221
Q ss_pred ----------cc--------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC-cEE
Q 025148 175 ----------LY--------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE-MVR 229 (257)
Q Consensus 175 ----------~~--------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~-~~~ 229 (257)
.+ ..+++.++.+.|+|||.+++..... ..+.+.++|.+.+ +..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~------------q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT------------QGEAVKALFEDTGFFEI 258 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC------------cHHHHHHHHHhcCCceE
Confidence 02 2456788999999999999988422 3678999999999 554
Q ss_pred EEEec-CCCCceEEEEEc
Q 025148 230 VRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 230 ~~~~~-gf~~~~~vv~~k 246 (257)
+.... .++..+.+..++
T Consensus 259 v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 259 VETLKDLFGRDRVVLAKL 276 (280)
T ss_pred EEEEecCCCceEEEEEEe
Confidence 44444 455444444443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=86.26 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=81.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
..-++++++++|||||+|..+..++.. +.++|+++|-+++ ++.++.++..+.--...++|.||.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFI 108 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFI 108 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEE
Confidence 445688999999999999999998854 6779999998876 567778877664212226999877
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
+ . .+.+.+++.+...|||||++++..-..+ +.....+.+++.|+
T Consensus 109 GGg----~~i~~ile~~~~~l~~ggrlV~naitlE-----------~~~~a~~~~~~~g~ 153 (187)
T COG2242 109 GGG----GNIEEILEAAWERLKPGGRLVANAITLE-----------TLAKALEALEQLGG 153 (187)
T ss_pred CCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH-----------HHHHHHHHHHHcCC
Confidence 4 3 2345889999999999999999764333 45566677777777
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=86.62 Aligned_cols=131 Identities=24% Similarity=0.339 Sum_probs=102.2
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCC---CCchhHHHHH-HhhccccHH---HHHHHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFD---DETFDFEFSN-VFDHALYPD---KFVMEI 184 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~---~~~fD~V~~~-~l~h~~~~~---~~l~~~ 184 (257)
-++|||||=+...... ..+..+|+.||+++....+.+.|+.+.|.| +++||+|.+. |++++++|. ++++.+
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~ 130 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRA 130 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHH
Confidence 5999999986654433 235568999999999999999999998874 6789998775 999999776 589999
Q ss_pred HHhccCCcE-----EEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 185 ERTLKPGGV-----CVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 185 ~r~LkpgG~-----l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
++.|+|+|. |++..|..- ..+.++.+.+.+..++...||..+.....--+ ...++++.+.
T Consensus 131 ~~fL~~~g~~~~~~LFlVlP~~C----v~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl-~y~l~r~~~~ 195 (219)
T PF11968_consen 131 HKFLKPPGLSLFPSLFLVLPLPC----VTNSRYMTEERLREIMESLGFTRVKYKKSKKL-AYWLFRKSGK 195 (219)
T ss_pred HHHhCCCCccCcceEEEEeCchH----hhcccccCHHHHHHHHHhCCcEEEEEEecCeE-EEEEEeecCC
Confidence 999999999 999988543 22335668889999999999999888764332 3445555443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=87.14 Aligned_cols=126 Identities=25% Similarity=0.348 Sum_probs=96.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC--CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ--PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~--~~~~~~fD~V~~ 168 (257)
.+.|.+|||...|-|+.+....++|...|+.++.++. .+.++.+|..+. .|+|++||+|+.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3578999999999999999999988779999998876 457778887765 688999999876
Q ss_pred H----HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec-CCC
Q 025148 169 N----VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD-GFG 237 (257)
Q Consensus 169 ~----~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~-gf~ 237 (257)
+ ++.--...+++.+|++|+|||||.++-.+.+... .|...+ -..++.+.+++.||..+.... +.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--ryrG~d--~~~gVa~RLr~vGF~~v~~~~~~~g 281 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--RYRGLD--LPKGVAERLRRVGFEVVKKVREALG 281 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--ccccCC--hhHHHHHHHHhcCceeeeeehhccc
Confidence 4 2222235678899999999999999988754431 222211 367888999999998777665 444
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=92.13 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=76.4
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCCCC--CCCchhHHHHH--Hh--
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQPF--DDETFDFEFSN--VF-- 171 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~~~--~~~~fD~V~~~--~l-- 171 (257)
+.+|||+|||+|.++..+++. +..+|+|+|+|+. ...++++|+.+... ..++||+|++| .+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999999998874 4568999999977 24678888765311 13579999887 22
Q ss_pred ---hccc--------------------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 ---DHAL--------------------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ---~h~~--------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
..+. -..++++.+.+.|||||++++.+... ...++..++.+.++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~------------~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER------------QAPLAVEAFARAGLI 234 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc------------hHHHHHHHHHHCCCC
Confidence 1110 12467778889999999999987422 356778888887774
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.8e-10 Score=91.54 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=77.9
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...-+.+|++|||.|.|+|.++..|+.. +.++|+.+|+.++ .+....+|+.+..+++ .||.
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDa 166 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDA 166 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCE
Confidence 3555789999999999999999999973 5579999999866 3666777887776665 7888
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
|+.+ +++|.++++.+++.|||||.+++-+|+.+
T Consensus 167 v~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 167 VFLD----LPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EEEc----CCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 8665 56799999999999999999999998654
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=89.07 Aligned_cols=88 Identities=27% Similarity=0.349 Sum_probs=67.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC----------cEEEecC-CCCCCCCCchhHHHH-HHhhccc--
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP----------LVIEGDF-HRQPFDDETFDFEFS-NVFDHAL-- 175 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~----------~~~~~d~-~~~~~~~~~fD~V~~-~~l~h~~-- 175 (257)
.+.-|||||||+|.-+..+.+.|. ..+|+|+|+.+. .++.+|. +-+||..++||.+|+ ..++++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 367899999999999999998884 899999998721 2344444 457999999998766 4333332
Q ss_pred -----cHH----HHHHHHHHhccCCcEEEEEe
Q 025148 176 -----YPD----KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 176 -----~~~----~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|. .++..++.+|++|+..+++.
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 344 36788999999999999986
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=93.67 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------CCcEEEecCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------PPLVIEGDFH 154 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------~~~~~~~d~~ 154 (257)
.+++...+.....++++.++|+|||.|..+...-+.+...++|+||++. ...++.+|..
T Consensus 103 NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 103 NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred hHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 3444444445556888999999999999988888878789999999966 2466777765
Q ss_pred C------CCCCCCchhHHHHH-Hhhcc----ccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 155 R------QPFDDETFDFEFSN-VFDHA----LYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 155 ~------~~~~~~~fD~V~~~-~l~h~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
. +++++.+||+|-|. ++|+. .....++.++.+.|||||+++-++|+.+
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 3 34556669999775 44443 3455688999999999999999998643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-10 Score=95.27 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 170 (257)
..+.+|||||||+|.++..+++. +..+++++|+++. ++.++.+|..+. .-..++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999988774 6679999999866 345677776543 22235799998875
Q ss_pred hhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++... ...++++++.+.|+|||++++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 43321 236899999999999999999654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=85.24 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
.+.++.+|||+|||+|.++..+++.+ .+++++|+++. ++.++.+|+.++++++++||.|++|.-.|
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 34677899999999999999999874 59999999964 46788999999988887899999985444
Q ss_pred cccHHHHHHHHHHh--ccCCcEEEEEeccC
Q 025148 174 ALYPDKFVMEIERT--LKPGGVCVLHVALS 201 (257)
Q Consensus 174 ~~~~~~~l~~~~r~--LkpgG~l~i~~~~~ 201 (257)
+. ...+..+.+. +.++|.++++.-..
T Consensus 89 ~~--~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 89 IS--TPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred cH--HHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 42 2444444432 45888998886443
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-09 Score=89.40 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
..+++|||+|||.|.++..+++. +..+++-+|+|.. +..+...|..+ +.++ +||+|+|| -+
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPf 234 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPF 234 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCc
Confidence 44569999999999999999986 6789999999954 12344555443 3344 89999998 33
Q ss_pred hccc-----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 172 DHAL-----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 172 ~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
|-=. --++++.+..+.|++||.|.|...... .| ..-+.+.|.+. ..+....||-
T Consensus 235 h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l---~y-------~~~L~~~Fg~v--~~la~~~gf~ 293 (300)
T COG2813 235 HAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL---PY-------EKKLKELFGNV--EVLAKNGGFK 293 (300)
T ss_pred cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC---Ch-------HHHHHHhcCCE--EEEEeCCCEE
Confidence 3111 124789999999999999999774111 22 45566777633 2333444665
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-09 Score=99.00 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC----CCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP----FDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~----~~~~~fD~V 166 (257)
..+|.+|||+|||+|..+..+++. +.++|+++|+++. ++.++++|..+.+ ..+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 367889999999999999998875 3468999999975 3567788887765 446789998
Q ss_pred HHH-------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN-------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~-------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ ++.+-++ ..+++.++.+.|||||.++.+++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 753 3433322 356789999999999999998864
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-10 Score=95.25 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
..+.+||+||||+|..+..+.+. +..+|+++|+++. ++.++.+|.... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999886 5568999999966 235566666543 2245789999
Q ss_pred HHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++...+.. ...++++.+++.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 887433322 135788999999999999998653
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=97.74 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CC--cE--EEecCCCCCC--CCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PP--LV--IEGDFHRQPF--DDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~--~~--~~~d~~~~~~--~~~~fD~V~~ 168 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. .. .+ ..+|....+. ++++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 467899999999999999999885 4569999999977 11 22 4455544433 4678999864
Q ss_pred H-------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEeccC
Q 025148 169 N-------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 169 ~-------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
+ ++.+.++ ..+++.++.++|||||.++.+++..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 4444332 3568899999999999999998743
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-09 Score=93.30 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=65.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.++++++|||+|||+|.++..+++.. .+.|+++|+++. ++.++.+|........++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 35678899999999999999998853 247999999975 3567788876655555689998874
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+++ ...+.+.|+|||.+++..
T Consensus 157 ~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh------HHHHHHhcCCCCEEEEEe
Confidence 44432 345678999999988865
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-10 Score=95.51 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=70.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
..+-++..|||+|||+|.++...++.|..+|+|+|.|.. .+.++++.++++.+|.+++|+|+|..
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 335678899999999999999999999899999998854 36788999998888888999998874
Q ss_pred hhccccHHHHH----HHHHHhccCCcEEEE
Q 025148 171 FDHALYPDKFV----MEIERTLKPGGVCVL 196 (257)
Q Consensus 171 l~h~~~~~~~l----~~~~r~LkpgG~l~i 196 (257)
+.+..-.+.++ -.=-+.|+|||.++=
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44333333333 233479999998763
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-09 Score=88.03 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~ 174 (257)
+....++|||||-|.+...+...+..+++-+|.|.. ......+|-+.++|.++++|+|++. .+|++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 455689999999999999999988889999999854 2356788889999999999999996 89999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+....+.+++..|||+|.++-++
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHH
Confidence 999999999999999999998775
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-10 Score=92.27 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=64.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...+++|++|||||||+|+.+..++.. + ...|+++|+.+. ++.+..+|...---+...||.|+
T Consensus 67 ~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 67 ALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRII 146 (209)
T ss_dssp HTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEE
T ss_pred HHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEE
Confidence 334789999999999999999999985 3 447999999876 57888998776444557899988
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ ....+ =..+.+.||+||++++-+.
T Consensus 147 v~~a~~~i------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVPEI------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred EeeccchH------HHHHHHhcCCCcEEEEEEc
Confidence 75 44422 2457788999999999663
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=87.87 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
++....++++++|||||||+|+.+..|++... +|+.+|..+. ++.+.++|...---+...||.|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEE
Confidence 33345568899999999999999999999765 9999999865 5788888887654455889998
Q ss_pred HHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.. ....++ +.+.+.||+||++++-+.
T Consensus 143 ~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 774 554333 346778999999999764
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-09 Score=96.64 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC--------------CCcEEEecCCCCC--CCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY--------------PPLVIEGDFHRQP--FDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++.. ..+|+|+|+++. .+.++++|..+.+ +++++||.|+++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 4678899999999999999998863 369999999976 2457788887653 345789999743
Q ss_pred ------Hhhc------ccc----------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDH------ALY----------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h------~~~----------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+ ... ..+++.++.+.|||||.++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111 111 236789999999999999998863
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-09 Score=97.70 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH--
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-- 169 (257)
.++.+|||+|||+|..+..+++. +.++|+|+|+++. ++.+..+|..+.+ ++++||.|+++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 57789999999999999888764 3458999999976 3467778887765 45689998742
Q ss_pred -----Hhh---------------ccc-cHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 170 -----VFD---------------HAL-YPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 170 -----~l~---------------h~~-~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
++. ++. ...+++.++.+.|||||+++.+++..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 221 111 12357899999999999999998743
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-09 Score=97.25 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=70.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
..+|.+|||+|||+|..+..+++. +.++|+++|+++. ++.+..+|...++ +.+++||.|+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 467889999999999999988875 3569999999976 2457778877665 446789998753
Q ss_pred -------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+-+ ...+++.++.+.|||||.++.+++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 222111 2246789999999999999999874
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-09 Score=89.17 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=83.5
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCC---C
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFD---D 160 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~---~ 160 (257)
.+...-+.+|++|||.|.|+|.++..|++. +.++|+..|+.++ ++.+...|+.+..++ +
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc
Confidence 344555789999999999999999999974 5679999999865 467778888654442 2
Q ss_pred CchhHHHHHHhhccccHHHHHHHHHHhc-cCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 161 ETFDFEFSNVFDHALYPDKFVMEIERTL-KPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.+|.|+.+ +++|.+++..+.++| |+||++++-+|.-. .......-+++.||..+...
T Consensus 112 ~~~DavfLD----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie-----------Qv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 112 SDFDAVFLD----LPDPWEAIPHAKRALKKPGGRICCFSPCIE-----------QVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp TSEEEEEEE----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH-----------HHHHHHHHHHHTTEEEEEEE
T ss_pred CcccEEEEe----CCCHHHHHHHHHHHHhcCCceEEEECCCHH-----------HHHHHHHHHHHCCCeeeEEE
Confidence 457776554 667999999999999 99999999988543 35555666777888776544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-09 Score=90.35 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
.+++.+|||+|||+|..+..+++. ..+.|+++|+++. ++.+...|....+...++||.|+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 467889999999999999998874 2358999999976 3456777776665555679998653
Q ss_pred ------Hhhcc---------------c-cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHA---------------L-YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~---------------~-~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+- . ...++++++.+.|||||+++.+++.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 22111 1 1235889999999999999998864
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.8e-09 Score=86.44 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc----CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH--Hh--
Q 025148 110 NESKALCIGARVGQEVEALKRV----GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN--VF-- 171 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~--~l-- 171 (257)
.+.+|||+|||+|.++..+++. +..+|+|+|+++. .+.+..+|+...++ +++||+|++| ..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999988764 3458999999977 45788889887665 5689999998 22
Q ss_pred h--cc-------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcC------ChhHHHHhcccCCcE
Q 025148 172 D--HA-------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLF------SVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ~--h~-------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~------~~~~~~~~f~~~~~~ 228 (257)
. +. .-...+++.+.+++++|+. ++ |..--...|+...+| +.....++.++.|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL--P~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II--PQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee--CcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 1 11 1144578888886666664 33 432222234444333 344455666666653
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-09 Score=92.70 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
-.+..|||+|||+|.++...++.|..+|++++-|+- .+.++.+.++++.+|+ +.|++++.-+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccchh
Confidence 356789999999999999999999889999998854 5678899999998875 599999975555
Q ss_pred cccHHHHHH---HHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVM---EIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~---~~~r~LkpgG~l~i~~ 198 (257)
+.--+++++ ..+|.|||.|..+=.+
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 554555553 4568999999987544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-09 Score=95.60 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCC--CeEEEECCCCCHHHHHHHHcCCCcEEEecCC---CCCCcE--------EEe--cCCC
Q 025148 91 KIQVFAKFFDDLKRKKLLSNE--SKALCIGARVGQEVEALKRVGVSDSVGIDLV---PYPPLV--------IEG--DFHR 155 (257)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s---~~~~~~--------~~~--d~~~ 155 (257)
.+..|.+.+.+++... ...+ ..+||+|||.|.++.+|.+++. .+..+-.. +..+.+ ..+ -...
T Consensus 97 Ga~~Yid~i~~~~~~~-~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~r 174 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLI-KWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQR 174 (506)
T ss_pred CHHHHHHHHHHHhhcc-ccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhhhcccc
Confidence 3444555555544332 1222 3799999999999999998753 33333222 211111 111 2357
Q ss_pred CCCCCCchhHHHHH--HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 156 QPFDDETFDFEFSN--VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 156 ~~~~~~~fD~V~~~--~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+||++++||+|.|. .+.+..+-...+-|+.|+|+|||+++++.|
T Consensus 175 LPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 175 LPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 89999999999884 444444545678999999999999999876
|
; GO: 0008168 methyltransferase activity |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=88.08 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=66.4
Q ss_pred CeEEEECCCCCHHHHHHH----Hc-----CCCcEEEecCCCC--------------------------------------
Q 025148 112 SKALCIGARVGQEVEALK----RV-----GVSDSVGIDLVPY-------------------------------------- 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~----~~-----~~~~v~gvD~s~~-------------------------------------- 144 (257)
-+|+..||++|.-...++ +. ...+|+|+|+|+.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999997654433 32 1357999999944
Q ss_pred --------CCcEEEecCCCCCCC-CCchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFD-DETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~-~~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.|+.+.+++ .+.||+|+| |++.|+. ...++++.+++.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 235666677665443 578999999 8999985 46679999999999999988854
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-09 Score=86.17 Aligned_cols=138 Identities=22% Similarity=0.362 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------------------------- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------------------------- 144 (257)
..+..+|||||.+|.++..+++. +...|+|+||++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35678999999999999999985 6668999999954
Q ss_pred -------CC-------cEEEecCCCCCCCCCchhHHHH-HHh--hccc----cHHHHHHHHHHhccCCcEEEEEecc---
Q 025148 145 -------PP-------LVIEGDFHRQPFDDETFDFEFS-NVF--DHAL----YPDKFVMEIERTLKPGGVCVLHVAL--- 200 (257)
Q Consensus 145 -------~~-------~~~~~d~~~~~~~~~~fD~V~~-~~l--~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~--- 200 (257)
++ .....|+. .+....||+|+| .+- -|+. -..++++.+.+.|.|||+|+++---
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 00 00011111 233457999988 322 2232 4568999999999999999997311
Q ss_pred ----CCCcCcCCCC---CcCChhHHHHhcccC--CcEEEEEe--------cCCCCceEEEEEcccc
Q 025148 201 ----SKRADKYSAN---DLFSVKPLVKLFKRS--EMVRVRKV--------DGFGLDTEVVFRKNAK 249 (257)
Q Consensus 201 ----~~~~~~y~~~---~~~~~~~~~~~f~~~--~~~~~~~~--------~gf~~~~~vv~~k~~~ 249 (257)
.+.......| -.+.++....++.+. ++...... .||+ -...+++|++.
T Consensus 215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~-R~i~~y~Kk~~ 279 (288)
T KOG2899|consen 215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFD-RPILLYRKKLH 279 (288)
T ss_pred HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCcccc-ceeeeeeccCC
Confidence 0001111111 223666677766665 33333322 1555 25677887664
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=93.97 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|..+..+++. +.++|+++|+++. ++.++++|+.+.. ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 367789999999999999998874 3569999999965 3567788887653 33 67999976
Q ss_pred HH-------hhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 169 NV-------FDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 169 ~~-------l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+. +.+-+ ...++++++.+.|||||.++.+++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 41 11111 1135789999999999999988753
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-09 Score=85.16 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHH----Hc-----C-CCcEEEecCCCC-----------------------------------
Q 025148 110 NESKALCIGARVGQEVEALK----RV-----G-VSDSVGIDLVPY----------------------------------- 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~----~~-----~-~~~v~gvD~s~~----------------------------------- 144 (257)
..-+|+..||++|.-...++ +. + ..+|+|+|+|+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44699999999997654433 31 2 358999999954
Q ss_pred --------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+...|+.+.+...+.||+|+| ||+-++... .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 567888888884445678999999 798888744 568999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-09 Score=91.17 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=65.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCC----------------------CcEEEecCCCC-CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYP----------------------PLVIEGDFHRQ-PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~----------------------~~~~~~d~~~~-~~~~~~fD 164 (257)
....+||+||||+|..+..+.+. +..+|+++|++++. +.++.+|+.+. .-.+++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45679999999999999888886 45699999999761 22334444432 23346799
Q ss_pred HHHHHHhhccc------cHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHAL------YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~------~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+++..+... .-.++++.+++.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99887433221 22568899999999999998874
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-08 Score=93.50 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC----------------------CCcEEEecCCCC-CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY----------------------PPLVIEGDFHRQ-PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~----------------------~~~~~~~d~~~~-~~~~~~fD 164 (257)
+++.+|||||||+|..+..+.+.+. .+|+++|++++ +++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5678999999999999999888754 69999999865 234455665542 22346899
Q ss_pred HHHHHHhhcc------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 165 FEFSNVFDHA------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 165 ~V~~~~l~h~------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
+|+++..+.. ...+++++.+++.|||||+++++..... +.. -...++.+.+++.||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~----~~~---~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY----FAP---KAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc----cch---HHHHHHHHHHHHcCC
Confidence 9988733221 1234688999999999999998763211 100 023456666777777
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-08 Score=84.47 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-----CCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-----FDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD 164 (257)
.++.+|||+|||+|..+..++.. +.++|+++|++++ .+.++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45779999999999988888763 4579999999976 356777777653 1 1246899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+.+.-. ......+..+.+.|+|||++++.-
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99875321 234467899999999999988753
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-08 Score=88.24 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=67.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~ 165 (257)
.....+||+||||.|..+..+++.+ ..+|+.+|+++. ++.++.+|.... ..++++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3567899999999999999999874 458999999864 345666675432 123568999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+++...+.. ...++++.+++.|+|||+++...
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9886443321 23468899999999999998764
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-08 Score=81.69 Aligned_cols=88 Identities=27% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CC-cEEEecCCCCCCCCCchhHHHH-HHhhcccc--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PP-LVIEGDFHRQPFDDETFDFEFS-NVFDHALY-- 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~-~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~-- 176 (257)
..+..++|+|||.|..... .+.+-++|.|++.. .. ....+|+..+|+.+.+||.+++ .++||+..
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 4588999999999977543 25567899999865 33 5788999999999999999988 69999973
Q ss_pred -HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 -PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 -~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..++++++.|+|+|||...+.++
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEe
Confidence 45689999999999999888875
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-08 Score=83.87 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
...++||.|||-|..+..+.-.-..+|--+|.++. ...+.+..++++..+.++||+|.+. ++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 34699999999999998775543458888888755 1245556666665556799999996 9999
Q ss_pred ccc--HHHHHHHHHHhccCCcEEEEEeccCCCcC-cCCC--CCcC-ChhHHHHhcccCCcEEEEEec--CCC
Q 025148 174 ALY--PDKFVMEIERTLKPGGVCVLHVALSKRAD-KYSA--NDLF-SVKPLVKLFKRSEMVRVRKVD--GFG 237 (257)
Q Consensus 174 ~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~y~~--~~~~-~~~~~~~~f~~~~~~~~~~~~--gf~ 237 (257)
+.| ..++++.+...|+|||++++-........ .|.. +.+. +...+.++|+++|+..+.... ||-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 985 45789999999999999999754332211 2222 2222 677899999999998777653 664
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=87.60 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC----CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ----PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~----~~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|.++..+++.. .+|+|+|+|+. ++.+.++|+.+. ++.+++||+|++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 4577899999999999999999876 59999999976 357888887642 345678999987
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ --.- ..+.++.+.+ ++|+++++++.
T Consensus 374 dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 374 DPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 6 1111 1245555555 69999999987
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-08 Score=83.25 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=64.0
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC---CCCCCchhHHHHHH-
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ---PFDDETFDFEFSNV- 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~---~~~~~~fD~V~~~~- 170 (257)
...+||||||.|.++..++.. +...++|+|+... ++.++++|+... -++++++|-|+.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999985 7889999999865 678888888763 24456677653320
Q ss_pred -----hhccc---cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 -----FDHAL---YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 -----l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
-.|.. --..+++.+.++|+|||.+.+.+-
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 11111 124689999999999999999884
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-08 Score=89.93 Aligned_cols=92 Identities=33% Similarity=0.399 Sum_probs=81.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
..++.+++|+|||-|......+....+.++|+|.++. ...+..+|+...|+++++||.+.+ .+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 4677799999999999999999887789999999965 234578899999999999999988 69
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+|.+++..+++|++|++||||+.+....
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 99999999999999999999999998753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-08 Score=97.42 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------------------CCcEEEecCCCCCC
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------------------PPLVIEGDFHRQPF 158 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------------------~~~~~~~d~~~~~~ 158 (257)
+.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999885 4569999999966 13566777665321
Q ss_pred C-CCchhHHHHH--Hh-------------hcc------------c------------cHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 D-DETFDFEFSN--VF-------------DHA------------L------------YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 ~-~~~fD~V~~~--~l-------------~h~------------~------------~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ...||+|+|| .+ +|- . -..+++++..++|||||.+++.+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999887 21 110 0 01567788899999999999988
Q ss_pred ccCCCcCcCCCCCcCChhHHH-HhcccCCcEEEE
Q 025148 199 ALSKRADKYSANDLFSVKPLV-KLFKRSEMVRVR 231 (257)
Q Consensus 199 ~~~~~~~~y~~~~~~~~~~~~-~~f~~~~~~~~~ 231 (257)
... ..+.+. ++|++.||....
T Consensus 279 G~~------------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GGR------------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Ccc------------HHHHHHHHHHHHCCCCeeE
Confidence 422 255677 588887765433
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=83.25 Aligned_cols=86 Identities=13% Similarity=-0.041 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++.. .+++||+|+++-=.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr- 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR- 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC-
Confidence 46899999999999999999876 59999999976 35688888876532 23579998876100
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
- .....+.++...++|+++++++.
T Consensus 251 ~-G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 251 R-GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred C-CccHHHHHHHHHcCCCeEEEEEC
Confidence 0 01122333344478888888876
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.6e-08 Score=80.99 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=71.0
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhcc
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~ 174 (257)
........+|+|||+|.|.++..+++. +..+++..|.-. .++.++.+|+. -++|. +|+++. +++|+.
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhc
Confidence 334466679999999999999999874 788999999742 26889999998 66666 999766 799888
Q ss_pred ccH--HHHHHHHHHhccCC--cEEEEEec
Q 025148 175 LYP--DKFVMEIERTLKPG--GVCVLHVA 199 (257)
Q Consensus 175 ~~~--~~~l~~~~r~Lkpg--G~l~i~~~ 199 (257)
.+. .++|+++++.|+|| |+++|...
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 754 46789999999999 99998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-08 Score=96.30 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCC-CCCCchhHHHHH--
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQP-FDDETFDFEFSN-- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~-~~~~~fD~V~~~-- 169 (257)
++.+|||+|||+|.++..++..|..+|+++|+|+. .+.++++|+.+.- -..++||+|+++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999877667999999966 2456778865431 114689999885
Q ss_pred Hhh----------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFD----------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~----------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+. ...+..+++..+.+.|+|||.+++.+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 221 123455678889999999999988764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-08 Score=84.83 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=63.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCCC-------------------CcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPYP-------------------PLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~-------------------~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
..+.+||+||||+|..+..+.+.+ ..+++++|+++.. +.+..+|..+. .-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 445699999999999998888764 5689999999661 22333343221 11246899998
Q ss_pred HHHhhccc---c--HHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHAL---Y--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~---~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++...+.. + ..++++.+.+.|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 86432221 1 4578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5e-08 Score=89.34 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=61.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcC-----CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVG-----VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
+..|+|||||+|.++...++.+ ..+|++|+-|+. .+.++.+|++++..+. ++|+|+|.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 5689999999999998776643 469999999865 5789999999998765 79999997
Q ss_pred Hhhcccc---HHHHHHHHHHhccCCcEEE
Q 025148 170 VFDHALY---PDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 170 ~l~h~~~---~~~~l~~~~r~LkpgG~l~ 195 (257)
.+..+.+ -.+.+....|.|||||+++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5544432 2246788889999999776
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-08 Score=88.64 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCC--C--CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQP--F--DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~--~--~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..++..+..+|+++|+|+. .+.++++|+.+.- + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999988766656569999999966 2356778876541 1 246899998
Q ss_pred HH--Hhhc--------cccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--VFDH--------ALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~l~h--------~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+.. ..+..++++...++|+|||.++...+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87 2211 11334556678899999999998764
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-07 Score=73.48 Aligned_cols=94 Identities=23% Similarity=0.325 Sum_probs=70.3
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHHH-
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSNV- 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~- 170 (257)
.+++++.+|+|+||.+|.+++.+++. ....|+|+|+.|- ++.++++|+.+-+ +....+|+|+|+.
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45688999999999999999999986 2345999999976 6788999998754 3445579998751
Q ss_pred --------hhcccc---HHHHHHHHHHhccCCcEEEEEec
Q 025148 171 --------FDHALY---PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 --------l~h~~~---~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+|... -..++.-+..+|+|||.+++-+-
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 223221 12345666789999999999774
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-08 Score=79.84 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=62.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC-CCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ-PFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~~~~~~fD~V~~~-~l~ 172 (257)
.+.+|||+|||+|.++..+...+..+|+++|+++. ++.++++|+.+. +...++||+|+++ -+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy- 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF- 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC-
Confidence 56799999999999998765555569999999966 355677776553 2234569999987 21
Q ss_pred ccccHHHHHHHHHH--hccCCcEEEEEec
Q 025148 173 HALYPDKFVMEIER--TLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~~~~~~l~~~~r--~LkpgG~l~i~~~ 199 (257)
+-.-..++++.+.+ +|+|+|+++++..
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 11223345565555 3799999999874
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=78.59 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=67.6
Q ss_pred CCeEEEECCCCCHHHHH----HHHc-C-----CCcEEEecCCCC------------------------------------
Q 025148 111 ESKALCIGARVGQEVEA----LKRV-G-----VSDSVGIDLVPY------------------------------------ 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~----l~~~-~-----~~~v~gvD~s~~------------------------------------ 144 (257)
.-+|+-.||++|.-... +.+. + ..+|+|+|+|..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 56999999999965433 3332 2 468999999943
Q ss_pred --------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.|+..-++..+.||+|+| ||+-++..+ .++++.++..|+|||+|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 456777777766634567999999 888888754 468999999999999999954
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.6e-07 Score=75.93 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=103.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhc----CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKL----LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------- 144 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------- 144 (257)
|+...-.++...+..++..+..... -+...+||--|||-|.++..++..|. .+.|.|.|-.
T Consensus 25 WS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~ 103 (270)
T PF07942_consen 25 WSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQ 103 (270)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCC
Confidence 7666555666666555555543322 13456999999999999999999987 9999999821
Q ss_pred -----------------------------------------CCcEEEecCCCCCCCC---CchhHHHHH-HhhccccHHH
Q 025148 145 -----------------------------------------PPLVIEGDFHRQPFDD---ETFDFEFSN-VFDHALYPDK 179 (257)
Q Consensus 145 -----------------------------------------~~~~~~~d~~~~~~~~---~~fD~V~~~-~l~h~~~~~~ 179 (257)
+.....||+.+.-.++ ++||+|+.. .++-..+.-+
T Consensus 104 ~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~ 183 (270)
T PF07942_consen 104 PNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIE 183 (270)
T ss_pred CCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHH
Confidence 2355667777664444 789998664 5555567778
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCcC----CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADKY----SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~y----~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++.|.++|||||+.+=.-|..-+.... ...--++.+++..+.++.||..+.+..
T Consensus 184 Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 184 YIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999655444543221111 000224889999999999997766543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.2e-07 Score=75.08 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC----------------CCcEEEecCC-----CCCCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY----------------PPLVIEGDFH-----RQPFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~----------------~~~~~~~d~~-----~~~~~~~~fD~V 166 (257)
..+..+||+|||+|.++..++. .+.+.|+++|.|+. .+.++..+.+ ..+..++++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999998887 47889999999976 3344433222 224556889998
Q ss_pred HHH--Hhhccc-------------------------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSN--VFDHAL-------------------------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~--~l~h~~-------------------------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+|| .+-+-+ ....++.-+.|.|+|||.+.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 887 332211 122345667899999999999875
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.9e-08 Score=77.64 Aligned_cols=90 Identities=27% Similarity=0.365 Sum_probs=59.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----CCcEEEecCCCCC--------CC--CCchhHHHHHHh-h
Q 025148 110 NESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----PPLVIEGDFHRQP--------FD--DETFDFEFSNVF-D 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~--~~~fD~V~~~~l-~ 172 (257)
.+.++||+||++|.++..+.+.. ..+|+|+|+.+. .+..+++|+.+.. +. .+.||+|+|+.- .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 34899999999999999999976 579999999976 2334445543321 11 268999988631 1
Q ss_pred --------ccc---cHHHHHHHHHHhccCCcEEEEEec
Q 025148 173 --------HAL---YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 173 --------h~~---~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.. --...+.-+.+.|||||.+++-+-
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 112234555678999999998764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.2e-07 Score=75.01 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCc---EEEecCCCCCCCC-----CchhHHHHHHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPL---VIEGDFHRQPFDD-----ETFDFEFSNVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~---~~~~d~~~~~~~~-----~~fD~V~~~~l~ 172 (257)
.++.++||+|||+|.++..+++.|..+|+|+|+++. +.. +...|+.....++ ..+|+++...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 467799999999999999999987779999999984 111 2333444332222 2455443321
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+..+.+.|++ |.+++-+
T Consensus 152 -----~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 -----ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -----HhHHHHHHHHhCc-CeEEEEc
Confidence 1357889999999 7766554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=78.25 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=64.1
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC---CCCCCchhHHHHHHhh
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ---PFDDETFDFEFSNVFD 172 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~---~~~~~~fD~V~~~~l~ 172 (257)
..+||||||.|.+...+|+. +...++|||+... ++.+++.|+..+ -+++++.|-|+-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 58999999999999999985 8889999999855 456667776654 2344467765332
Q ss_pred ccccH-------------HHHHHHHHHhccCCcEEEEEec
Q 025148 173 HALYP-------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~~~-------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++|| ..+++.+.++|||||.+.+.+-
T Consensus 127 -FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 127 -FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 2222 3689999999999999999984
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-07 Score=73.07 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=61.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------------CCcEEEecCCCCC----CCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------------PPLVIEGDFHRQP----FDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~----~~~~~fD~ 165 (257)
...+.+|||+|||+|..+..++.. +..+|+..|.++. .+.+...+..+.. ...++||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 456789999999999999999987 6679999998754 2233333333211 23467999
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|++ +++..-...+.+++.+.+.|+++|.+++..+
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 888 6777667777889999999999999777765
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=74.12 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC-------------------------CC
Q 025148 95 FAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY-------------------------PP 146 (257)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~-------------------------~~ 146 (257)
++..++.| ...+++|.+.||+|.|+|+++..++.. ....++|||.-++ ..
T Consensus 69 ha~~le~L--~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 69 HATALEYL--DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHH--HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 44555554 334688999999999999999888753 2335589987654 45
Q ss_pred cEEEecCCCCCCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 147 LVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 147 ~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++.+|.....-+.+.||.|.+.. ...+.-+++...|++||.+++-.
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EEEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhccCCeEEEee
Confidence 678888888877788999998861 12256678888999999999855
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-07 Score=79.55 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=51.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...+.++.+|||||||+|.++..+++.+. +|+|+|+++. ++.++++|+.++++++-.+|.|++|
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 33456788999999999999999999865 9999999976 4568889998887654324677776
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.9e-07 Score=78.11 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEe-cCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEG-DFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~-d~~~~~~~~~~fD~ 165 (257)
+......++|..|||==||||.++..+.-.|. +++|+|++.. ...+... |+.++|+++++||.
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccce
Confidence 33345568899999999999999999887775 9999999965 2223444 99999999999999
Q ss_pred HHHH------Hhhccc----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSN------VFDHAL----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~------~l~h~~----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++ +--... -..++++.+.++||+||++++..|
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9775 101111 145789999999999999999887
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.5e-06 Score=65.37 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH---Hh
Q 025148 111 ESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN---VF 171 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~---~l 171 (257)
...+||||||+|..+.+|++. +..-+.++|+|+. .+..++.|+..- +..+++|+++-| +.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 578999999999999999985 5667899999987 345566665542 222566654332 10
Q ss_pred --------h-----cc--cc----HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 --------D-----HA--LY----PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 --------~-----h~--~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+ +. .+ ..+++..+-..|.|.|++++..-... .++++.++.+..++.
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------~p~ei~k~l~~~g~~ 187 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------KPKEILKILEKKGYG 187 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------CHHHHHHHHhhcccc
Confidence 1 11 11 23566777788899999998764332 478888888888764
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-07 Score=77.53 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=53.3
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...+.++.+|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.+++++ .||.|++|.-
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCC
Confidence 3335678899999999999999999975 48999999965 467889999888765 3799988844
Q ss_pred hcc
Q 025148 172 DHA 174 (257)
Q Consensus 172 ~h~ 174 (257)
.++
T Consensus 101 y~i 103 (258)
T PRK14896 101 YQI 103 (258)
T ss_pred ccc
Confidence 344
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.1e-07 Score=82.28 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC----CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ----PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~----~~~~~~fD~V~~ 168 (257)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++. ++.++.+|+.+. ++.+++||+|+.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 4567899999999999999999865 48999999976 456788887652 234567999876
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+-=. ..-..++++.+.+ ++|++.++++.
T Consensus 369 dPPr-~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 369 DPPR-KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CcCC-CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 4100 0002356666554 89999888865
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=74.22 Aligned_cols=70 Identities=23% Similarity=0.249 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchh-
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFD- 164 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD- 164 (257)
...++......++.+|||||||+|.++..+++.+. +++++|+++. ++.++.+|+.+.+++ .+|
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~ 94 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK 94 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence 33333333456788999999999999999999764 7999999866 356788898888765 466
Q ss_pred --HHHHHHh
Q 025148 165 --FEFSNVF 171 (257)
Q Consensus 165 --~V~~~~l 171 (257)
+|++|.-
T Consensus 95 ~~~vvsNlP 103 (253)
T TIGR00755 95 QLKVVSNLP 103 (253)
T ss_pred cceEEEcCC
Confidence 6777743
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=66.20 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=56.2
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH-HHhhccccHH--HHHHHHHHhcc
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPD--KFVMEIERTLK 189 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~--~~l~~~~r~Lk 189 (257)
-.+-||||.=.+. +....+-+.-.+ .+..++......+|.+++.|+|++ ++++|+...+ .++++++|.||
T Consensus 5 ~kv~ig~G~~r~n------pgWi~~d~ed~~-~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr 77 (185)
T COG4627 5 EKVKIGAGGKRVN------PGWIITDVEDRP-EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR 77 (185)
T ss_pred eEEEEeccccccC------CCceeeehhccc-ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 3577999952221 111222222222 233333334456899999999999 6999998544 57899999999
Q ss_pred CCcEEEEEeccCC
Q 025148 190 PGGVCVLHVALSK 202 (257)
Q Consensus 190 pgG~l~i~~~~~~ 202 (257)
|||++-+++|..+
T Consensus 78 p~G~LriAvPdl~ 90 (185)
T COG4627 78 PGGKLRIAVPDLK 90 (185)
T ss_pred cCcEEEEEcCCcc
Confidence 9999999998654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=76.48 Aligned_cols=85 Identities=8% Similarity=-0.061 Sum_probs=60.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-~l~ 172 (257)
++.+|||+|||+|.++..++..+ .+|+|+|+++. ++.+..+|+.+... ..++||+|+.+ --.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999766 59999999976 35677778765321 12458998776 111
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ ..++++.+. .++|+++++++.
T Consensus 312 G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 GI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 11 234555554 479999999987
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-06 Score=74.90 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-C----CCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F----DDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~----~~~~fD 164 (257)
.+..+|||||||+|..+..++.. ..++|+++|.+++ .+.++.+|+.+. + + .+++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45789999999999999999873 3458999999976 456777776542 1 1 236899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+||.+.-. .+....++.+.+.|+|||.+++.
T Consensus 197 ~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDADK--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 99775221 23457788889999999999886
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=69.39 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=47.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
-.|..|+|+|||||.++...+-.|..+|+|+|++++ .+.+..+|+.+.. ..+|.|+.|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEEC
Confidence 356789999999999999998888889999999987 4677788877653 457777666
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-06 Score=74.32 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=66.7
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHHHHhhccccHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPD 178 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~ 178 (257)
.+.+|.++||+||++|.++..+.+.|. +|+|||..+- .+....+|......+.+.+|.++|++.+ .|.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH
Confidence 457899999999999999999999886 9999997754 3555666655543236789999998654 577
Q ss_pred HHHHHHHHhccCC--cEEEEEe
Q 025148 179 KFVMEIERTLKPG--GVCVLHV 198 (257)
Q Consensus 179 ~~l~~~~r~Lkpg--G~l~i~~ 198 (257)
++.+-+.++|..| ...++..
T Consensus 284 rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 284 RVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred HHHHHHHHHHhcCcccEEEEEE
Confidence 8888888888776 3444443
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-07 Score=74.27 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=64.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-----CCCCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-----FDDETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD~ 165 (257)
...+||||||+.|+-+..+++. ..++|+.+|++++ .+.++.+|..+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4579999999999999999984 3579999999976 466777877652 1 12357999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
||.+.-. .+....+..+.+.|+|||++++.-
T Consensus 125 VFiDa~K--~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDADK--RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEESTG--GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcccc--cchhhHHHHHhhhccCCeEEEEcc
Confidence 9875211 234467788889999999999864
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.2e-07 Score=71.82 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC------cEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP------LVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~------~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
+...++||+|+|.|.++..++..- .+|++.+.|..+. .+......++---+-++|+|.| |.++...+|-+.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHH
Confidence 345699999999999999988743 3789999886511 1111112222223446999999 8999999999999
Q ss_pred HHHHHhccC-CcEEEEEe
Q 025148 182 MEIERTLKP-GGVCVLHV 198 (257)
Q Consensus 182 ~~~~r~Lkp-gG~l~i~~ 198 (257)
+.|+.+|+| +|.+++..
T Consensus 190 ~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhccCCCcEEEEE
Confidence 999999999 89888763
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-06 Score=77.12 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
....+||.||+|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988875 4568999999976 234555555442 23356899998
Q ss_pred HHHhhccc-------cHHHHHH-HHHHhccCCcEEEEEe
Q 025148 168 SNVFDHAL-------YPDKFVM-EIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~-------~~~~~l~-~~~r~LkpgG~l~i~~ 198 (257)
.++..... ...++++ .+.+.|+|||++++..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 87543221 2346787 8999999999998864
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=70.68 Aligned_cols=89 Identities=12% Similarity=-0.040 Sum_probs=61.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC-C-C-CC-CchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-DD-ETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-~~-~~fD~V~~~ 169 (257)
.+.++||++||+|.++..++.++...|+++|.++. .+.++++|+.+. . + .. ..||+|+.+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999999988779999999966 235677777432 1 1 12 237777765
Q ss_pred -HhhccccHHHHHHHHH--HhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIE--RTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~ 199 (257)
-+. -....+.++.+. .+|+++|+++++..
T Consensus 129 PPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 221 122334455443 36899999988764
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-06 Score=67.22 Aligned_cols=115 Identities=19% Similarity=0.121 Sum_probs=74.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCc---------EEEecCCCC----------------CCcEEEecCCCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSD---------SVGIDLVPY----------------PPLVIEGDFHRQPF 158 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~---------v~gvD~s~~----------------~~~~~~~d~~~~~~ 158 (257)
....+++..+||--||+|.+....+.. .... ++|.|+++. .+.+.+.|+.++++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 333467889999999999999887664 2333 889999976 35678889999998
Q ss_pred CCCchhHHHHH--Hhhccc-------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 159 DDETFDFEFSN--VFDHAL-------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 159 ~~~~fD~V~~~--~l~h~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
.++++|.|++| .-.-+. -..++++++.++|++ ..+++.. ....+.+.+...++..
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~---------------~~~~~~~~~~~~~~~~ 166 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT---------------SNRELEKALGLKGWRK 166 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE---------------SCCCHHHHHTSTTSEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE---------------CCHHHHHHhcchhhce
Confidence 88899999887 111111 123567899999999 4444433 2335566677777766
Q ss_pred EEEecC
Q 025148 230 VRKVDG 235 (257)
Q Consensus 230 ~~~~~g 235 (257)
.....|
T Consensus 167 ~~~~~~ 172 (179)
T PF01170_consen 167 RKLYNG 172 (179)
T ss_dssp EEEEET
T ss_pred EEEEEe
Confidence 655543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-06 Score=65.21 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCCCH-HHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCC-CCchhHHHHHHhhccccHH
Q 025148 109 SNESKALCIGARVGQ-EVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFD-DETFDFEFSNVFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~-~~~fD~V~~~~l~h~~~~~ 178 (257)
.++.++||||||+|. ++..|++.|. +|+|+|+++. ...++.+|+.+..+. -+.+|+|++- .-|.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi-----rpp~ 88 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI-----RPPR 88 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe-----CCCH
Confidence 346799999999996 8888888775 9999999988 356788888765432 2346666552 2234
Q ss_pred HHHHHHHHhccC-CcEEEEE
Q 025148 179 KFVMEIERTLKP-GGVCVLH 197 (257)
Q Consensus 179 ~~l~~~~r~Lkp-gG~l~i~ 197 (257)
++..-+.++-|. |.-++|.
T Consensus 89 el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 89 DLQPFILELAKKINVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 455555554444 3445554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-06 Score=81.24 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=63.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 170 (257)
..+..+||||||.|.++..++.. +...++|+|+... ++.++..|+..+ -++++++|-|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~- 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL- 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE-
Confidence 34568999999999999999885 7789999999865 334444444322 2556666655332
Q ss_pred hhccccH-------------HHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYP-------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~-------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++|| ..+++.+.++|||||.+.+.+-
T Consensus 425 ---FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 ---FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred ---CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 2332 3689999999999999999884
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-06 Score=75.77 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------C------CcEEE-ecCCCC----CCCCCchhHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------P------PLVIE-GDFHRQ----PFDDETFDFE 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------~------~~~~~-~d~~~~----~~~~~~fD~V 166 (257)
.+.++||||||+|.+...++.. ...+++|+|+++. + +.+.. .+..++ ..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999888877664 4569999999976 2 22221 222222 1246789999
Q ss_pred HHH--Hhhcccc----HHHHHHH----------------HHHhccCCcEEEEEeccCCCcCcCCCC---------CcCCh
Q 025148 167 FSN--VFDHALY----PDKFVME----------------IERTLKPGGVCVLHVALSKRADKYSAN---------DLFSV 215 (257)
Q Consensus 167 ~~~--~l~h~~~----~~~~l~~----------------~~r~LkpgG~l~i~~~~~~~~~~y~~~---------~~~~~ 215 (257)
+|| .+....+ ..+-.+. ....+.+||.+.+..+.......+... ..-+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 998 3332222 1111222 223455788776665421110000000 11267
Q ss_pred hHHHHhcccCCcEEEEEe
Q 025148 216 KPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 216 ~~~~~~f~~~~~~~~~~~ 233 (257)
..+.+.+++.+...+...
T Consensus 274 ~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTI 291 (321)
T ss_pred HHHHHHHHHcCCceEEEE
Confidence 888888888888655544
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=77.67 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=74.3
Q ss_pred CCCC-eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNES-KALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.+.. ++|-+|||.-.+...+-+.|...|+.+|+|+. ...+...|...+.|++++||+|+. +.++
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 4444 99999999999999999989889999999965 346778899999999999999988 6777
Q ss_pred ccccH----------HHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYP----------DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~----------~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++..+ ...+.+++|+|++||+.+..+
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 76522 245689999999999977654
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-06 Score=74.66 Aligned_cols=74 Identities=27% Similarity=0.365 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~ 162 (257)
...++....+.++++|||||||+|.++..+++.+ .+|+|+|+++. ++.++.+|+.+.+++ .
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--Y 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--c
Confidence 3344444455778899999999999999999875 48999999954 357888888876653 5
Q ss_pred hhHHHHHHhhccc
Q 025148 163 FDFEFSNVFDHAL 175 (257)
Q Consensus 163 fD~V~~~~l~h~~ 175 (257)
||.|++|.=.++.
T Consensus 102 ~d~VvaNlPY~Is 114 (294)
T PTZ00338 102 FDVCVANVPYQIS 114 (294)
T ss_pred cCEEEecCCcccC
Confidence 8988877333333
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=64.09 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEe-cCCCC--------CCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEG-DFHRQ--------PFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~-d~~~~--------~~~~~~fD~V~~~ 169 (257)
-.+++++++|||+||.+|.+++...+. +.+.|.|||+-.- ...++++ |+.+. .+++..+|+|+|+
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 345688999999999999999988875 6789999998744 3445555 55542 2577889999886
Q ss_pred Hhhcc-----ccHHH-------HHHHHHHhccCCcEEEEEeccCC
Q 025148 170 VFDHA-----LYPDK-------FVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 170 ~l~h~-----~~~~~-------~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
..+.. .|..+ ++.-....++|+|.+++-++...
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 43322 12222 33334456789999999886443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.2e-06 Score=69.93 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEE-ecCCCC-C-CCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIE-GDFHRQ-P-FDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~-~d~~~~-~-~~~~~fD~V~ 167 (257)
...++|||||++.|+-+.+|+.. + .++++.+|++++ .+..+. +|..+. . ...++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46789999999999999999984 4 679999999987 234445 344432 2 3468999997
Q ss_pred HHHhhccc-cHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHAL-YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~-~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ +-. +..++++.+.+.|+|||++++.-
T Consensus 138 ID---adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 ID---ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred Ee---CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 64 111 34478999999999999999864
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-05 Score=61.01 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=84.0
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEE-EecCCCC---C------CCCCchhHHHH-HHhhccc----
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVI-EGDFHRQ---P------FDDETFDFEFS-NVFDHAL---- 175 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~-~~d~~~~---~------~~~~~fD~V~~-~~l~h~~---- 175 (257)
+++.+-+|...=..=....+.|..+|..+|.++-.+.-. +..+..+ . -..++||++.| +++||..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGRY 81 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRY 81 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccccc
Confidence 567888888855544444456777899998875422111 1111111 1 12467999988 7999974
Q ss_pred -c---H---HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 176 -Y---P---DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 176 -~---~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
| | .+.+.++.++||+||.+++.+|.....-.|..+++|....+..+|...++...
T Consensus 82 GDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~t 143 (177)
T PF03269_consen 82 GDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDT 143 (177)
T ss_pred CCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEee
Confidence 2 2 46889999999999999999998877777888899999888888876655443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=67.17 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC--CCCCCchhHHHHHHh-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ--PFDDETFDFEFSNVF- 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~--~~~~~~fD~V~~~~l- 171 (257)
.+|++||.||-|-|.....+.+.+..+-+-|+..+. ++.+..+-.++. .++|+.||-|+-+++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 678999999999999999998875446677777765 455666655553 577899999998766
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|..+...+.+.+.|.|||+|++-.-
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 88889999999999999999997764
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-06 Score=75.68 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
.++|.+|||++||+|.-+..+++. +.+.++++|+++. ++.+...|...+. ...+.||.|+.+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 468899999999999999999885 3468999999976 3455566665542 223569988632
Q ss_pred -------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++..-+ -..+++..+.+.|||||+++-+++.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 332211 1145788899999999999999875
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-06 Score=69.08 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------CCcEEEe
Q 025148 87 DWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------PPLVIEG 151 (257)
Q Consensus 87 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------~~~~~~~ 151 (257)
-|......++..+..-+....+++|.+||-+|+++|.....+++. + .+.|+|++.|+. ++.-+..
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 455544444444433333455689999999999999999999985 4 679999999975 5566777
Q ss_pred cCCCCC---CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 152 DFHRQP---FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 152 d~~~~~---~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
|+.... .--+.+|+|++++-+ -.+.+-++.++...||+||.+++.+-.......-..... ..+-.+.+++.+|.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQ-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v--f~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQ-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV--FAEEVKKLKEEGFK 206 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH--HHHHHHHHHCTTCE
T ss_pred cCCChHHhhcccccccEEEecCCC-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH--HHHHHHHHHHcCCC
Confidence 776531 112478888887653 233334668888999999999998632110000000001 12233445666665
Q ss_pred EEEEe--cCCCCceEEE
Q 025148 229 RVRKV--DGFGLDTEVV 243 (257)
Q Consensus 229 ~~~~~--~gf~~~~~vv 243 (257)
.+..+ +.|.-+-.++
T Consensus 207 ~~e~i~LePy~~dH~~v 223 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMV 223 (229)
T ss_dssp EEEEEE-TTTSTTEEEE
T ss_pred hheEeccCCCCCCcEEE
Confidence 55544 4777653333
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=63.25 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------CCcEEEecCCCCC-----CCCCchhHHHHH--
Q 025148 109 SNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------PPLVIEGDFHRQP-----FDDETFDFEFSN-- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------~~~~~~~d~~~~~-----~~~~~fD~V~~~-- 169 (257)
..|.-|||+|.|+|-++..+.+++ ..++++++.|++ .+.++.+|..++. ..+..||.|+|.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 567799999999999999998863 458999999977 4667888887764 567789999986
Q ss_pred Hhhcc-ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHA-LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~-~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+..- ....+.++++...|.+||.++--+
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 33221 134467899999999999887644
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-05 Score=60.39 Aligned_cols=86 Identities=38% Similarity=0.517 Sum_probs=62.8
Q ss_pred EEEECCCCCHHHHHHHHcCC--CcEEEecCCCC--------C-------CcEEEecCCC--CCCCC-CchhHHHHHHhhc
Q 025148 114 ALCIGARVGQEVEALKRVGV--SDSVGIDLVPY--------P-------PLVIEGDFHR--QPFDD-ETFDFEFSNVFDH 173 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~--------~-------~~~~~~d~~~--~~~~~-~~fD~V~~~~l~h 173 (257)
++|+|||+|... .+..... ..++|+|+++. . +.+..++... .++.+ ..||++.+....|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 3333321 37899999864 1 3566777665 67777 4899993343333
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...+...+.++.+.|+|+|.+++....
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 333788999999999999999998754
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.8e-06 Score=74.99 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
+.+|||++||+|..+..++.. +..+|+++|+++. ...+.++|+..+....+.||+|+.+-+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999764 5458999999976 233666676543211456999877643
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+..++....+.+++||++.++.
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888788899999999985
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.7e-06 Score=68.05 Aligned_cols=96 Identities=25% Similarity=0.202 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCCC-eEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCC
Q 025148 99 FDDLKRKKLLSNES-KALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 99 ~~~l~~~~~~~~~~-~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~ 161 (257)
...+.....+.... +++|||+|.|.-+..++= .+..+++.+|.+.. ++.++++.+++ +...+
T Consensus 36 ~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~ 114 (184)
T PF02527_consen 36 LDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRE 114 (184)
T ss_dssp HHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT
T ss_pred HHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCC
Confidence 33333344444444 899999999999988876 47779999998865 57788888888 55567
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+||+|++..+. ....+++-+.+.|++||.+++.-
T Consensus 115 ~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 115 SFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 89999886443 24467788888999999988864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-06 Score=70.90 Aligned_cols=95 Identities=25% Similarity=0.286 Sum_probs=53.3
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEGDFHRQ 156 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~d~~~~ 156 (257)
++....+.+++..+|||||.|......+-. +..+++||++.+. .+.+..+|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 333444678899999999999998877754 5545999999966 234456665543
Q ss_pred CCCC---CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 157 PFDD---ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 157 ~~~~---~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
++.+ ..-|+|++|....-++....+.++...||+|-+++-
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3211 124677776443334445566777788888877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=69.18 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=67.0
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHHHHH
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEFSNV 170 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 170 (257)
.+||-||-|.|..++.+.+. +..+++.+|+++. .+.++..|..+. .-..++||+|++++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999997 4679999999976 234455555443 11223799999987
Q ss_pred hhccccH------HHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYP------DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~------~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.... .| .++.+.+++.|+++|+++...
T Consensus 158 tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCC-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 7663 34 688999999999999999984
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.7e-06 Score=69.39 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
....+||=||.|.|..++.+.+.+. +|+-||+++. ++.++. ... .-..++||+|+.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEc
Confidence 5678999999999999999999875 9999999976 122221 111 1123689999987
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ .+.++.+.++|.|+|||+++.+.
T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 35678899999999999999975
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-06 Score=65.84 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
-.|++++|+|||.|.+....+-.+...|+|+|++++ ++.+.++|+.++.+..+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 367899999999999997776666679999999987 4567888888888778888886665
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=62.54 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=90.1
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cC--CCcEEEecCCCC---------------C-CcEEEecCCCCC-CC--CCchhH-H
Q 025148 110 NESKALCIGARVGQEVEALKR-VG--VSDSVGIDLVPY---------------P-PLVIEGDFHRQP-FD--DETFDF-E 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~--~~~v~gvD~s~~---------------~-~~~~~~d~~~~~-~~--~~~fD~-V 166 (257)
..-+||||.||.|....-... .+ ..+|.-.|.|+. . +.+.++|+.+.. +. +-..++ |
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 456999999999998766655 33 258899999976 2 377888877641 11 223577 4
Q ss_pred HHHHhhccccHH---HHHHHHHHhccCCcEEEEEe-ccCCC---------cCcCC-CC--CcCChhHHHHhcccCCcEEE
Q 025148 167 FSNVFDHALYPD---KFVMEIERTLKPGGVCVLHV-ALSKR---------ADKYS-AN--DLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 167 ~~~~l~h~~~~~---~~l~~~~r~LkpgG~l~i~~-~~~~~---------~~~y~-~~--~~~~~~~~~~~f~~~~~~~~ 230 (257)
+|..+|-++|-. +.++.+.+.+.|||+++.+- |.+.. ..... .. ..-+..++.+++..+||.++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 667888888743 56889999999999999874 11111 00000 00 22378899999999999765
Q ss_pred EE-ecCCCCceEEE
Q 025148 231 RK-VDGFGLDTEVV 243 (257)
Q Consensus 231 ~~-~~gf~~~~~vv 243 (257)
.. ++.|++-|+.+
T Consensus 295 ~q~ID~~GIFTVSl 308 (311)
T PF12147_consen 295 DQRIDEWGIFTVSL 308 (311)
T ss_pred hheeccCCceEEEe
Confidence 54 46777655444
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=66.48 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
.....++....+++++.|||+|.|||.++..|.+.+. +|+++++++. ...++.+|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 5566667777889999999999999999999999875 9999999976 457888998877655
Q ss_pred CchhHHHHH
Q 025148 161 ETFDFEFSN 169 (257)
Q Consensus 161 ~~fD~V~~~ 169 (257)
.||.+++|
T Consensus 123 -~fd~cVsN 130 (315)
T KOG0820|consen 123 -RFDGCVSN 130 (315)
T ss_pred -ccceeecc
Confidence 48887765
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.7e-06 Score=70.03 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-C-----CCCchh
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-----DDETFD 164 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~fD 164 (257)
...+|||||++.|.-+.+++.. ..++++.+|.+++ .+.++.++..+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 4579999999999999999873 3569999999976 466777776553 1 1 136899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+||.+.-. .+....++.+.+.|+|||++++.
T Consensus 159 ~iFiDadK--~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDADK--DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecCCH--HHhHHHHHHHHHhcCCCeEEEEc
Confidence 99875221 12335677788999999998875
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.4e-05 Score=71.70 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC----CCCCCchhHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ----PFDDETFDFEFSN 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~----~~~~~~fD~V~~~ 169 (257)
|++|||+=|=||.++...+..|..+|++||.|.. ...++++|+.++ .-...+||+|+.+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 8999999999999999999877779999999966 346777777654 2234589998764
Q ss_pred --Hhh--------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 --VFD--------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 --~l~--------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+- -..+...++..+.++|+|||.++++++
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 322 123556788999999999999999885
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00013 Score=63.93 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc--
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY-- 176 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~-- 176 (257)
-...+|+|.|.|..+..+... ..+|-++++... .+..+.+|...- .|.+ |+|+. -+++|+.|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDED 253 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHH
Confidence 468999999999999998884 335667666533 245555565544 4444 58877 49999985
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
-.+++++++..|+|||.+++...
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEec
Confidence 45899999999999999998754
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.4e-06 Score=69.18 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC----CCCCCchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ----PFDDETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~----~~~~~~fD~V~~~ 169 (257)
.+.++||+-||+|.++.....+|..+|+.||.++. ...++..|.... .....+||+|+.+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 57899999999999999999999889999999966 245566664322 1246789999887
Q ss_pred -HhhccccHHHHHHHHH--HhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIE--RTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~ 199 (257)
=+..-....++++.+. .+|+++|.++++..
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 1211111356777776 79999999999875
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=67.53 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCC-c
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDE-T 162 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~-~ 162 (257)
..++..+....+.+++.|||||+|.|.++..|++.+. +|+++++++. ++.++.+|+...++++- .
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 3445555555566789999999999999999999876 8999999865 57789999999988763 4
Q ss_pred hhHHHHH
Q 025148 163 FDFEFSN 169 (257)
Q Consensus 163 fD~V~~~ 169 (257)
++.|++|
T Consensus 96 ~~~vVaN 102 (259)
T COG0030 96 PYKVVAN 102 (259)
T ss_pred CCEEEEc
Confidence 6777766
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=66.14 Aligned_cols=84 Identities=23% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
..++.+|+|+-||-|.++..+++. ....|+++|++|. .+....+|..+... .+.+|-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 577899999999999999999983 4458999999976 35678888887754 77899888764
Q ss_pred hhccccHHHHHHHHHHhccCCcEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~ 195 (257)
.++.. +++..+.+.+|+||++-
T Consensus 178 p~~~~---~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESSL---EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSGG---GGHHHHHHHEEEEEEEE
T ss_pred hHHHH---HHHHHHHHHhcCCcEEE
Confidence 33222 57788899999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.5e-05 Score=60.52 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhccc-
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHAL- 175 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~- 175 (257)
+.+.|+|+|+|.++...++.. .+|++++.+|. +++++.+|+.+..|+ .-|+|+|..++-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhhHHhh
Confidence 789999999999999888764 49999999977 568899999998884 46999997655433
Q ss_pred --cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
....++..+..-||-+|.++=+
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccH
Confidence 2234667777788888887743
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-05 Score=69.40 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH--------cCCCcEEEecCCCC-----------------CCcEEEecCCCCCCC--C
Q 025148 108 LSNESKALCIGARVGQEVEALKR--------VGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFD--D 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~--~ 160 (257)
..++.+|+|-+||+|.++..+.+ ....+++|+|+++. ...+..+|....+.. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 35667899999999999877765 25568999999866 123667776555433 4
Q ss_pred CchhHHHHH---Hhh-c----cc--------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 161 ETFDFEFSN---VFD-H----AL--------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 ~~fD~V~~~---~l~-h----~~--------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+.||+|++| ... + .. ....++..+.+.||+||.+.+.+|.
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 789999887 211 0 00 1124778999999999999998874
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.8e-05 Score=65.22 Aligned_cols=125 Identities=17% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------------------------C-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------------------------P- 145 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------------------------~- 145 (257)
+|.++||||||+-.....-+..-..+|+..|.++. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 46799999999855533223233347999998844 1
Q ss_pred CcEEEecCCCC-CCCC-----CchhHHHHH-Hhhccc----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCC----C
Q 025148 146 PLVIEGDFHRQ-PFDD-----ETFDFEFSN-VFDHAL----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSA----N 210 (257)
Q Consensus 146 ~~~~~~d~~~~-~~~~-----~~fD~V~~~-~l~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~----~ 210 (257)
-.++..|+... |+.. ..||+|++. +++-.. ...++++++.+.|||||.|++............. .
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~ 215 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC 215 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence 13566777664 3332 259998663 555443 4567899999999999999998653322111111 1
Q ss_pred CcCChhHHHHhcccCCcEEEEEec
Q 025148 211 DLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
-..+.+.+++.++++|+.......
T Consensus 216 l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 216 LPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccCCHHHHHHHHHHcCCEEEeccc
Confidence 223788899999999996555543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.7e-05 Score=67.51 Aligned_cols=82 Identities=9% Similarity=-0.083 Sum_probs=52.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-----------C-----C
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-----------D-----D 160 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-----------~-----~ 160 (257)
.+|||+|||+|.++..+++.. .+|+|+|+++. ++.++.+|+.+.-- . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888864 49999999976 34567777654210 0 0
Q ss_pred CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 161 ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..||+|+.+== ...-..++++.+ ++|+++++++.
T Consensus 278 ~~~d~v~lDPP-R~G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 278 YNCSTIFVDPP-RAGLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred CCCCEEEECCC-CCCCcHHHHHHH---HcCCcEEEEEc
Confidence 12576655400 000012344444 34788888886
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.6e-05 Score=67.34 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=54.1
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC-C-CC--------------
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ-P-FD-------------- 159 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~-~~-------------- 159 (257)
+.++||++||+|.++..+++.. .+|+|+|+++. ++.++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 3579999999999999888754 48999999976 345677776542 1 10
Q ss_pred CCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 160 DETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 160 ~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+||+|+.+ --. .-..++++.+.+ |+++++++.
T Consensus 286 ~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 286 SYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 1247887665 100 112344454443 788888887
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=63.96 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCC--CeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC-CCcE-------EEecC
Q 025148 86 RDWDRKIQVFAKFFDDLKRKKLLSNE--SKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY-PPLV-------IEGDF 153 (257)
Q Consensus 86 ~~w~~~~~~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~-~~~~-------~~~d~ 153 (257)
..|.++++.+-.++... +..+ ..|+|+.+|.|.++.+|.+.+. .+|+-++-... .+.+ .+.-.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~-----i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWC 418 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLA-----IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWC 418 (506)
T ss_pred HHHHHHHHHHHHhhccc-----ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchh
Confidence 56777777765555421 2222 4799999999999999988652 12222211111 1111 11122
Q ss_pred CCCCCCCCchhHHHHH-Hhhccc---cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 154 HRQPFDDETFDFEFSN-VFDHAL---YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~~-~l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+.++.-+.+||+|.++ +|.+.. +.+.++-|+.|+|+|||.++|..-. .-...+..+.+...+..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~------------~vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV------------DVLEKVKKIAKSLRWEV 486 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH------------HHHHHHHHHHHhCcceE
Confidence 3345557899999885 555544 5677899999999999999996421 13566777777777654
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 487 ~~~ 489 (506)
T PF03141_consen 487 RIH 489 (506)
T ss_pred EEE
Confidence 443
|
; GO: 0008168 methyltransferase activity |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00033 Score=56.42 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=76.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------------CCcEEEecCCCCCCCCCchh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------------~~~~~~~d~~~~~~~~~~fD 164 (257)
++++.+|+|+=.|.|+++..++.. +.+.|+++-..+. +.+.+-.+...++ +.+..|
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d 124 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLD 124 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccc
Confidence 588999999999999999999874 4457887754432 2333333333444 334466
Q ss_pred HHHHH--------HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCC---CCcCChhHHHHhcccCCcEEEE
Q 025148 165 FEFSN--------VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSA---NDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 165 ~V~~~--------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~---~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++..+ -.-|-..-.++..++++.|||||++++..-........++ -...+...+.+.-...||+...
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 65442 2223335667889999999999999987532221111111 1334666677777777765443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=57.35 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEec
Q 025148 87 DWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGD 152 (257)
Q Consensus 87 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d 152 (257)
.|..+....+..+-.=+....+++|++||=+|+.+|......++. +.+.++|++.|+. ++.-+.+|
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D 132 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED 132 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc
Confidence 344444443333322233455689999999999999999999995 6678999999987 34445555
Q ss_pred CCCCC-C--CCCchhHHHHHHhhccccHHH---HHHHHHHhccCCcEEEEEe
Q 025148 153 FHRQP-F--DDETFDFEFSNVFDHALYPDK---FVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 153 ~~~~~-~--~~~~fD~V~~~~l~h~~~~~~---~l~~~~r~LkpgG~l~i~~ 198 (257)
+.... + --+.+|+|+.++- +|.+ +..++..-||+||.+++.+
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 54321 0 1134666666543 3443 4578889999999888775
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.3e-05 Score=66.52 Aligned_cols=90 Identities=27% Similarity=0.375 Sum_probs=65.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCC-chhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDE-TFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~-~fD~V 166 (257)
.+..+||-||-|.|..+..+.+.+ ..+|+.+|+++. ++.++.+|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999999998864 568999999966 345667776543 11223 89999
Q ss_pred HHHHhhcc-----ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHA-----LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~-----~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+..... ..-.++++.+++.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 87643311 234689999999999999999986
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=59.77 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 111 ESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
+.+++|||+|.|.-+..++= .+..+|+-+|...+ ++.++++.+++..-....||+|.|..+.-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999998883 46668999998866 57788888887653222299998864432
Q ss_pred ccHHHHHHHHHHhccCCcEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.....+-+...+|+||.++.
T Consensus 147 --L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 147 --LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --hHHHHHHHHHhcccCCcchh
Confidence 23556677789999998765
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.5e-05 Score=59.83 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC--CCCC-CchhHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDD-ETFDFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~-~~fD~V~~~- 169 (257)
.|.++||+=+|+|.++.....+|...++.||.+.. ...++..|.... .... +.||+|+.+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 57899999999999999999999889999999966 345566666532 1122 249999886
Q ss_pred Hhh-ccccHHHHHHH--HHHhccCCcEEEEEec
Q 025148 170 VFD-HALYPDKFVME--IERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~-h~~~~~~~l~~--~~r~LkpgG~l~i~~~ 199 (257)
-++ .+.+....+.. -..+|+|||.++++..
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 222 23333444444 4578999999999874
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00035 Score=59.05 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=82.1
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCC--CC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFD--DE 161 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~--~~ 161 (257)
.+...-+.+|.+|||-|.|+|.++.++++. +.++++..|+.+. ++.+...|+-...|. +.
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 333455689999999999999999999984 5679999998754 566777777665443 34
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcE-EEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGV-CVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~-l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.+|.|+.+ ++.|..++-.+.++||.+|. ++.-.|.-+ ..+.-.+.+.++||..+..+.
T Consensus 177 ~aDaVFLD----lPaPw~AiPha~~~lk~~g~r~csFSPCIE-----------Qvqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFLD----LPAPWEAIPHAAKILKDEGGRLCSFSPCIE-----------QVQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred ccceEEEc----CCChhhhhhhhHHHhhhcCceEEeccHHHH-----------HHHHHHHHHHhCCCceEEEEE
Confidence 56665444 66799999999999999874 443344222 233444566677776666553
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00035 Score=58.07 Aligned_cols=88 Identities=23% Similarity=0.221 Sum_probs=64.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CC---cEEEecCCCCC---CCCCchhHHHHH-Hh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PP---LVIEGDFHRQP---FDDETFDFEFSN-VF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~---~~~~~d~~~~~---~~~~~fD~V~~~-~l 171 (257)
+..++..+||+|+-||.++..+.+.|...|+|+|.... .. .+...|+..+. +. +..|+++|+ ++
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh
Confidence 44678899999999999999999999889999999864 11 22334444442 22 257888775 33
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ...++..+..+++++|.++.-+
T Consensus 155 IS---L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 155 IS---LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred hh---HHHHHHHHHHhcCCCceEEEEe
Confidence 21 3368889999999999888765
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00059 Score=59.98 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=63.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC---------------CCc--EEEecCCCC----CC--C
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY---------------PPL--VIEGDFHRQ----PF--D 159 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~---------------~~~--~~~~d~~~~----~~--~ 159 (257)
+.++..++|+|||+|.-+..|.+. ....++++|+|.. .+. -+++|..+. +- .
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356779999999999887765542 2357999999964 122 256666442 11 1
Q ss_pred CCchhHHHH--HHhhccccHH--HHHHHHHH-hccCCcEEEEEecc
Q 025148 160 DETFDFEFS--NVFDHALYPD--KFVMEIER-TLKPGGVCVLHVAL 200 (257)
Q Consensus 160 ~~~fD~V~~--~~l~h~~~~~--~~l~~~~r-~LkpgG~l~i~~~~ 200 (257)
.....+++. +++..+...+ .+++++.+ .|+|||.++|.+-.
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 223566655 3777766444 67899999 99999999998743
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=56.65 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=58.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.-.|.+|||+|+|+|..+...+..|...|+..|+.+. .+.+...|... ++..||+++. +++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 3568899999999999999998888889999998865 23333444333 5677999877 4333
Q ss_pred ccccHHHHHHHHHHhccCCcEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.-..-.+.+. +.+.|+..|..++
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEE
Confidence 2223345666 6666666665554
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00049 Score=53.23 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHh-hcCCCCCeEEEECCCCCHHHHHHHH-----cCCCcEEEecCCCC
Q 025148 92 IQVFAKFFDDLKRK-KLLSNESKALCIGARVGQEVEALKR-----VGVSDSVGIDLVPY 144 (257)
Q Consensus 92 ~~~~~~~~~~l~~~-~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~ 144 (257)
++.+..++..+... ....+...|+|+|||.|.++..++. ....+|+|+|.++.
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 34455555555444 3335677999999999999999998 56679999999976
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00027 Score=66.48 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=27.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcC---------CCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVG---------VSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~ 144 (257)
.+.+|||.|||+|.++..+.+.. ..+++|+|+++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~ 74 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT 74 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH
Confidence 45699999999999998876531 147899999866
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0004 Score=59.87 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCCCc-----------E----EEecCC--CC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYPPL-----------V----IEGDFH--RQ 156 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~-----------~----~~~d~~--~~ 156 (257)
...+.++......-...+|||+|||+|..+-.+.+. ...+++++|.|+.+.. . ...... ..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 344555443332234579999999999877666653 3458999999976110 0 001111 11
Q ss_pred CCCCCchhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q 025148 157 PFDDETFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 157 ~~~~~~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++. ..|+|++ ++|..+.+ ..++++.+.+.+.+ .|++..
T Consensus 99 ~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 99 PFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred cCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence 222 2399877 79988886 22344555444444 666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00039 Score=59.91 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=92.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhc----CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKL----LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------- 144 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------- 144 (257)
|++..-.++...+..++..+..... -+..-+||--|||.|.++..++..|. .+-|-++|.-
T Consensus 119 wssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~ 197 (369)
T KOG2798|consen 119 WSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQ 197 (369)
T ss_pred hhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhcc
Confidence 6665555565556555555433221 13345899999999999999998765 5555565511
Q ss_pred -----------------------------------------CCcEEEecCCCCC---CCCCchhHHHHH-HhhccccHHH
Q 025148 145 -----------------------------------------PPLVIEGDFHRQP---FDDETFDFEFSN-VFDHALYPDK 179 (257)
Q Consensus 145 -----------------------------------------~~~~~~~d~~~~~---~~~~~fD~V~~~-~l~h~~~~~~ 179 (257)
......||+.+.- -..++||+|+.. .++-..+.-+
T Consensus 198 ~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Nile 277 (369)
T KOG2798|consen 198 ENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILE 277 (369)
T ss_pred CCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHH
Confidence 1122345554431 122469986443 4555556668
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCc-CC-CC--C-cCChhHHHHhcccCCcEEEEEe
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADK-YS-AN--D-LFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~-y~-~~--~-~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.+..|.++|||||+.+=.-|..-+... .. .+ . -++.+++.++.+..||..+++.
T Consensus 278 Yi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 278 YIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 899999999999998765553221111 00 01 1 1377888899999999877665
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00027 Score=58.39 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC------CCCCCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ------PFDDETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~------~~~~~~fD~ 165 (257)
..+++||||.=+|+-+...+.. ..++|+++|+++. .+.++++...+. ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5689999999888888777764 4569999999976 355666655432 235678999
Q ss_pred HHHHHhhccc-cHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHAL-YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~-~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|.+ |.. +......++.+.+|+||++++.
T Consensus 153 aFvD---adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVD---ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEc---cchHHHHHHHHHHHhhcccccEEEEe
Confidence 8664 111 2236778999999999999985
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=5.8e-05 Score=65.52 Aligned_cols=43 Identities=12% Similarity=-0.043 Sum_probs=34.8
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY 144 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~ 144 (257)
.+....+.+++.+||.+||.|..+..+++.. .++|+|+|.++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~ 55 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD 55 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH
Confidence 3333334678899999999999999999863 579999999976
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.36 E-value=4.4e-05 Score=65.96 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-C--CCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-P--FDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~--~~~~~fD~V~~ 168 (257)
..+.+|||+=|=+|.++...+..|..+|++||.|.. ...+++.|+.+. . -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 357899999999999999988877678999999954 345677776542 1 12468999987
Q ss_pred H--Hhh-----ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 169 N--VFD-----HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 169 ~--~l~-----h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+ .+. -..+..+++..+.++|+|||.+++.++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5 221 112455778889999999999988775
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00012 Score=65.74 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=64.0
Q ss_pred CeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHHHhhc
Q 025148 112 SKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSNVFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~~l~h 173 (257)
-+|||+.||+|..+..++.. +..+|+++|+++. ++.+.++|....- ...+.||+|..+-+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf-- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF-- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC--
Confidence 58999999999999999886 5568999999987 1345555555431 11356888866542
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+..++..+.+.+++||++.++.
T Consensus 124 -Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCcHHHHHHHHHhcccCCEEEEEe
Confidence 355689999999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00051 Score=60.63 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=72.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...|.+|||+=||-|.++..++..+..+|+++|+||. .+..+++|.......-+.+|-|+++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 4669999999999999999999988767999999987 256788898888765577888877633
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
. ...+++....+.+|+||++....-
T Consensus 266 ~---~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 266 K---SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred C---cchhhHHHHHHHhhcCcEEEEEec
Confidence 2 334688888899999999888754
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=55.51 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=63.1
Q ss_pred CeEEEECCCCC--HHHHHHHH--cCCCcEEEecCCCC-------------C--CcEEEecCCCCC--CC----CCchh--
Q 025148 112 SKALCIGARVG--QEVEALKR--VGVSDSVGIDLVPY-------------P--PLVIEGDFHRQP--FD----DETFD-- 164 (257)
Q Consensus 112 ~~vLDiGcG~G--~~~~~l~~--~~~~~v~gvD~s~~-------------~--~~~~~~d~~~~~--~~----~~~fD-- 164 (257)
...||||||-- ......++ .+.++|+-+|+++. . ..++++|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 47999999953 34555655 37789999999965 3 468899988642 11 12344
Q ss_pred ----HHHHHHhhccc---cHHHHHHHHHHhccCCcEEEEEeccCCCc--------Cc----CCCCCcCChhHHHHhcccC
Q 025148 165 ----FEFSNVFDHAL---YPDKFVMEIERTLKPGGVCVLHVALSKRA--------DK----YSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 165 ----~V~~~~l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~----y~~~~~~~~~~~~~~f~~~ 225 (257)
+++..+++|+. +|..+++.+...|.||.+|+++....+.. .. -..-.+.+.+++..+|...
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g~ 229 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDGL 229 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTTS
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCCC
Confidence 33446999996 58889999999999999999986543210 00 1111344777777777744
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0014 Score=58.63 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=66.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC---CCcEEEecCCCC---------------CCcEEEecCCCCC---CCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG---VSDSVGIDLVPY---------------PPLVIEGDFHRQP---FDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V 166 (257)
.++|.+|||+.++.|.=+..+++.. ...|+++|.++. ++.....|....+ ...++||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 4788999999999999998888852 235699999976 3456666665442 222359977
Q ss_pred HHH-------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN-------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~-------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+.+ ++.--+ -..+++....+.|||||.|+-+++.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 432 332111 1235788999999999999999874
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=63.84 Aligned_cols=91 Identities=12% Similarity=-0.103 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-------------------------------------------CCCcEEEecCCCC-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-------------------------------------------GVSDSVGIDLVPY- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~- 144 (257)
+++..++|-+||+|.++...+.. ...+++|+|+++.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56789999999999999776541 0126899999976
Q ss_pred ---------------CCcEEEecCCCCCCC--CCchhHHHHH--Hhhcccc---HHHHHH---HHHHhccCCcEEEEEec
Q 025148 145 ---------------PPLVIEGDFHRQPFD--DETFDFEFSN--VFDHALY---PDKFVM---EIERTLKPGGVCVLHVA 199 (257)
Q Consensus 145 ---------------~~~~~~~d~~~~~~~--~~~fD~V~~~--~l~h~~~---~~~~l~---~~~r~LkpgG~l~i~~~ 199 (257)
.+.+.++|+.+++.+ .++||+|++| ..+.+.+ ..++.+ +..+...+|+.+++.++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 256788898887544 3579999998 4333332 223333 33444448998888775
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00081 Score=57.59 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC---C
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD---E 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~---~ 161 (257)
..+..+....+.++..|||||+|.|.++..|.+.+ .+++++|+++. ++.++.+|+..+...+ +
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcC
Confidence 34444444445678999999999999999999987 59999999855 5788999999887654 2
Q ss_pred chhHHHHHHhhccccHHHHHHHHHH
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIER 186 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r 186 (257)
.-..|++|.=.++ ....+.++..
T Consensus 97 ~~~~vv~NlPy~i--s~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNI--SSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTG--HHHHHHHHHH
T ss_pred CceEEEEEecccc--hHHHHHHHhh
Confidence 3344566511122 2345555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0081 Score=51.62 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=63.8
Q ss_pred CCeEEEECCCCCHHHH-HHHHc--CCCcEEEecCCCC-----------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 111 ESKALCIGARVGQEVE-ALKRV--GVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~-~l~~~--~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..+|+=||||+=-++. .+++. ....|+++|+++. .+.+..+|..+.+..-..||+|+-.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 3599999999866554 44443 3457999999976 4678888887776555679987654
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCceEEEEEc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLDTEVVFRK 246 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~~~vv~~k 246 (257)
+-.--.+-++++..+.+.++||..+++-....-+..-|.. .++. .-.||....... +-..-+.++.||
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~---vd~~------~l~gf~~~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV---VDPE------DLRGFEVLAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-------TG------GGTTEEEEEEE---TT---EEEEE--
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC---CChH------HCCCeEEEEEECCCCCceeEEEEEEe
Confidence 2222336778999999999999999997543221111211 1111 112777666665 333336666666
Q ss_pred c
Q 025148 247 N 247 (257)
Q Consensus 247 ~ 247 (257)
.
T Consensus 272 ~ 272 (276)
T PF03059_consen 272 K 272 (276)
T ss_dssp -
T ss_pred c
Confidence 4
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.97 E-value=4.7e-05 Score=55.76 Aligned_cols=83 Identities=24% Similarity=0.222 Sum_probs=34.1
Q ss_pred EEECCCCCHHHHHHHHc----CCCcEEEecCCC---C------------CCcEEEecCCCC--CCCCCchhHHHHHHhhc
Q 025148 115 LCIGARVGQEVEALKRV----GVSDSVGIDLVP---Y------------PPLVIEGDFHRQ--PFDDETFDFEFSNVFDH 173 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~----~~~~v~gvD~s~---~------------~~~~~~~d~~~~--~~~~~~fD~V~~~~l~h 173 (257)
||||+..|..+..+++. +..+++++|..+ . .+.++.++..+. .++++++|+++-+.-|-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999988887763 223799999988 2 234444444322 12234566665543332
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.......++.+.+.|+|||++++.
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 334456778888999999999885
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=46.95 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcCC-CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKLLS-NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+.++-.+....... +....+|||||+|.+...|.+.|. .-+|+|.-..
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~R 91 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRR 91 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccccc
Confidence 45555555544433 456899999999999999999887 8899998654
|
; GO: 0008168 methyltransferase activity |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0014 Score=54.25 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=63.0
Q ss_pred CCeEEEECCCCCHHHHHHHHc--C------C--CcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRV--G------V--SDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFS 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~--~------~--~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~ 168 (257)
-.+++|+.+..|.++..|.+. . . ..|++||+.+- .+..+++|+.... |..++-|+|+|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence 468999999999999998864 1 1 13999999876 4566788887652 55678899998
Q ss_pred H------HhhccccHH------HHHHHHHHhccCCcEEEEEe
Q 025148 169 N------VFDHALYPD------KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~------~l~h~~~~~------~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ .+|.+.+.. .++.-...+|||||.++--+
T Consensus 122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 5 344443221 24456678999999998654
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=53.57 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEE--------------ecC
Q 025148 88 WDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIE--------------GDF 153 (257)
Q Consensus 88 w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~--------------~d~ 153 (257)
|.-........-... .......+++|||+|||.|.........+...+...|.|.+-...+. .+.
T Consensus 95 wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~ 173 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN 173 (282)
T ss_pred eecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhc
Confidence 444444433333232 34556778999999999999998888777678888888866110000 000
Q ss_pred C-----------CCCC-CCC--chhHHHHH-HhhccccHHHH-HHHHHHhccCCcEEEEEe
Q 025148 154 H-----------RQPF-DDE--TFDFEFSN-VFDHALYPDKF-VMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 154 ~-----------~~~~-~~~--~fD~V~~~-~l~h~~~~~~~-l~~~~r~LkpgG~l~i~~ 198 (257)
. +.-+ ..+ .||+|.+. ++--....+.. .......++++|++++..
T Consensus 174 ~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 174 HKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 0 0000 012 67887664 44434333333 455566778899887754
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0096 Score=54.91 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=67.7
Q ss_pred CeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 112 SKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
..|+=+|+|.|-+.....+. ...++++++-+|. .+.++..|...++-+.++.|+++|..|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELL 448 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELL 448 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhh
Confidence 46788999999887654431 3458899999987 467889999999866688999999877
Q ss_pred hccccH---HHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYP---DKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~---~~~l~~~~r~LkpgG~l~i~ 197 (257)
.-+.|- .+.+..+-+.|||+|+.+=.
T Consensus 449 GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 449 GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 666543 37899999999999877643
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0044 Score=56.80 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCC---CCchhHHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD---DETFDFEFSN- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~- 169 (257)
.+++++||+=||.|.++..+++.. .+|+|+|+++. ++.+..++.++.... ...+|.|+.+
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 567899999999999999999754 49999999977 466777777765322 2467777554
Q ss_pred ---HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 ---VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ---~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++ .++++.+. .++|..++++++
T Consensus 371 PR~G~~-----~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 371 PRAGAD-----REVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred CCCCCC-----HHHHHHHH-hcCCCcEEEEeC
Confidence 221 24445444 467888888887
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0041 Score=55.64 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=32.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCC
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHR 155 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~ 155 (257)
.++||+-||.|.++..+++... +|+|+|+++. ++.++.++..+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 4899999999999999998654 9999999866 45677666544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0054 Score=51.15 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=64.7
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCCCC---CCCCchhH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHRQP---FDDETFDF 165 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~ 165 (257)
....++++.+||-+|+++|.......+. +..-|++++.|+. ++.-+..|+.... +.-.-+|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEE
Confidence 4556799999999999999999998885 4568999999976 3444444544321 11135777
Q ss_pred HHHHHhhccccHHH---HHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDK---FVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~---~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+++-+ |.+ +.-+...-||+||-+++++-
T Consensus 230 IFaDvaq----pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 230 IFADVAQ----PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EeccCCC----chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 7776543 333 23567778999999999863
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0009 Score=58.00 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=64.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~ 168 (257)
..++.+|||+.+|.|.-+..+++. +.+.+++.|+++. ++.....|.... ......||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 467889999999999999998885 3579999999976 334444454443 122234776633
Q ss_pred H-------Hhhccc----------------cHHHHHHHHHHhc----cCCcEEEEEecc
Q 025148 169 N-------VFDHAL----------------YPDKFVMEIERTL----KPGGVCVLHVAL 200 (257)
Q Consensus 169 ~-------~l~h~~----------------~~~~~l~~~~r~L----kpgG~l~i~~~~ 200 (257)
+ ++..-+ -..+.++.+.+.+ ||||+++-+++.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2 222211 1235788999999 999999999874
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0066 Score=50.05 Aligned_cols=105 Identities=14% Similarity=0.044 Sum_probs=65.4
Q ss_pred EEEECCCCCHHHHHHHHcCC-CcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHH-HHHHhhccc
Q 025148 114 ALCIGARVGQEVEALKRVGV-SDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFE-FSNVFDHAL 175 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~ 175 (257)
|.||||--|.+..+|.+.+. .+++++|+++. .+.+..+|..+.--+.+..|.| ++++=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999864 36999999966 4677888865532122236874 5531000
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
--.+.+++....++....++++- .. ....+++++.+.||....+.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP-~~------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQP-NT------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEE-SS-------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeC-CC------------ChHHHHHHHHHCCCEEEEeE
Confidence 02256666666666666777754 22 47789999999998766654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0071 Score=49.60 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCC--------------CCCcEEEecCCCCCC----C----CCc
Q 025148 110 NESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVP--------------YPPLVIEGDFHRQPF----D----DET 162 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~--------------~~~~~~~~d~~~~~~----~----~~~ 162 (257)
+.+.|+|+|.-.|.-+..+++. +.++|+|+|++. ..+.+++||..+... . ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4679999999999888777652 457999999942 156788888765421 1 112
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+|+-++-|.-.+..+.++.....+++|+++++..
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 224444444444455677788899999999999974
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=49.95 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=36.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc----------C-------CCcEEEecCCCC-------------------CC---cE
Q 025148 108 LSNESKALCIGARVGQEVEALKRV----------G-------VSDSVGIDLVPY-------------------PP---LV 148 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~----------~-------~~~v~gvD~s~~-------------------~~---~~ 148 (257)
....-+|+|+||.+|..+..+.+. . ..+|+--|+-.. .. ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999988765421 1 136677776544 11 22
Q ss_pred EEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 149 IEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 149 ~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
+-+.+.+--+|+++.|+++| .++|++.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred cCchhhhccCCCCceEEEEEechhhhcc
Confidence 33455555688899999888 4777653
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.15 Score=45.93 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=17.0
Q ss_pred CChhHHHHhcccCCcEEEEEecC
Q 025148 213 FSVKPLVKLFKRSEMVRVRKVDG 235 (257)
Q Consensus 213 ~~~~~~~~~f~~~~~~~~~~~~g 235 (257)
-+.+++....++.|.-.+....-
T Consensus 287 ps~eEv~~~Ie~~gsF~I~~le~ 309 (386)
T PLN02668 287 PSLQDFKEVVEANGSFAIDKLEV 309 (386)
T ss_pred CCHHHHHHHHhhcCCEEeeeeEE
Confidence 38888999988888666665543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0079 Score=53.14 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCCC----------------------CcEEEecCCCC-CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPYP----------------------PLVIEGDFHRQ-PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~----------------------~~~~~~d~~~~-~~~~~~fD 164 (257)
+.-.+||-+|.|.|.-++.+.+.+ ..+|+-+|++|+. +.++..|..++ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 455799999999999999999986 6799999999872 23333443332 11224677
Q ss_pred HHHHHHhhcc------ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHA------LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~------~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+.+..+-- ....++-.-+.|.|+++|.++++.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 7654321110 023467788899999999999985
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0023 Score=50.17 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH--cCCCcEEEecCCCCCC-------------cEEEecCCC-------CCCCCCchhHHH
Q 025148 110 NESKALCIGARVGQEVEALKR--VGVSDSVGIDLVPYPP-------------LVIEGDFHR-------QPFDDETFDFEF 167 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~-------------~~~~~d~~~-------~~~~~~~fD~V~ 167 (257)
.|.+|||+|.|--.++..|.. .+...|.-.|-+++.+ ..-...... .....++||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999996555544433 3556899999886611 000000011 112345899998
Q ss_pred H-HHhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 168 S-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 168 ~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
| +.+-.-...+..++.|++.|+|.|..++..|..
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 8 555444556678899999999999988887744
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.025 Score=49.85 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+|||+|.|.|.-+.++.+. + -.+++-++.|+. ...-+..|-..+|.. ..|++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhh
Confidence 4467999999999887766553 2 124444555533 111222333334433 45888655
Q ss_pred -HHhhccccHH---HHHHHHHHhccCCcEEEEEec
Q 025148 169 -NVFDHALYPD---KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 169 -~~l~h~~~~~---~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+-+-|..... ..++.+...+.|||.++|..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 6554554332 367888899999999999864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.011 Score=45.34 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=27.6
Q ss_pred eEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC
Q 025148 113 KALCIGARVGQEVEALKRVG-VSDSVGIDLVPY 144 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~ 144 (257)
.+||+|||.|..+..+++.+ ..+|+++|.++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 48999999999999998864 348999999977
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.014 Score=49.31 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------CCcEEE---ecCCCCCCCCCc-hhH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------PPLVIE---GDFHRQPFDDET-FDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------~~~~~~---~d~~~~~~~~~~-fD~ 165 (257)
...+||++|+|+|..+..++.....+|+-.|+... .+.+.. ++..+..+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 34579999999997777777766668888887644 011111 111111122233 899
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
|++ +++.+...++.++.-+...|..+|.+++.++..+
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 877 5888788888899999999999997777776443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.031 Score=49.97 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=69.4
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------C-------cEEEe
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------S-------DSVGI 139 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------~-------~v~gv 139 (257)
..++...--.++..++|-=||+|.++...+..+. . .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 3333333345667999999999999988776531 1 27799
Q ss_pred cCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--HhhccccH-------HHHHHHHHHhccCCcEE
Q 025148 140 DLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHALYP-------DKFVMEIERTLKPGGVC 194 (257)
Q Consensus 140 D~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~~~-------~~~l~~~~r~LkpgG~l 194 (257)
|+++. .+.+.++|+.+++-+-+.+|+|+|| .=+-+.+. .++.+.+++.++--+..
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 99976 4688999999886443679999998 33333322 23445677777777788
Q ss_pred EEEec
Q 025148 195 VLHVA 199 (257)
Q Consensus 195 ~i~~~ 199 (257)
++++.
T Consensus 341 v~tt~ 345 (381)
T COG0116 341 VFTTS 345 (381)
T ss_pred EEEcc
Confidence 88763
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.039 Score=49.68 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC---CCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP---FDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V~~ 168 (257)
++|.+|||+.|.+|.=+.+++.. ..+.|++.|.+.. +..+...|....| ++. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 78899999999999888777763 4568999998876 2344555555433 333 7885522
Q ss_pred -----H------------------HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 169 -----N------------------VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 169 -----~------------------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. +..+..-..+++......+++||+|+-+++.
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 1 1122223456788888999999999998863
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.018 Score=53.04 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhc-CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKL-LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
++.+...+.+.. +..+..+||+-||||.++..+++ +..+|+||++++.
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPD 416 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChh
Confidence 455555555443 46678899999999999999988 4459999999987
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.013 Score=46.35 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=38.1
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCc-hhHHHH
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDET-FDFEFS 168 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~-fD~V~~ 168 (257)
.|+|+.||.|..+..+++... +|+++|+++. ++.++++|..+.. +..+. +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999999999999754 8999999976 5678888887652 22222 788764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.052 Score=44.33 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
+.-.+.|||||-|.++..|+.. +..-+.|.+|-..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 3457999999999999999885 7778899988633
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.048 Score=48.21 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=56.3
Q ss_pred hcCCCCCeEEEECCC-CCHHHHHHHH-cCCCcEEEecCCCC---------CCcEEEec-CCCCCCCCCchhHHHHHHhhc
Q 025148 106 KLLSNESKALCIGAR-VGQEVEALKR-VGVSDSVGIDLVPY---------PPLVIEGD-FHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG-~G~~~~~l~~-~~~~~v~gvD~s~~---------~~~~~~~d-~~~~~~~~~~fD~V~~~~l~h 173 (257)
...++|++|+=+|+| -|..+..+++ .+ .+|+++|.+++ ...++... ....+--.+.||+|+..+-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~- 239 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGP- 239 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCCh-
Confidence 445889999999987 3466677777 46 79999999987 23334332 11111111237776553113
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+....+.||+||.+++.
T Consensus 240 -----~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 240 -----ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -----hhHHHHHHHHhcCCEEEEE
Confidence 6788889999999999886
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.022 Score=49.69 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
+.+.....++++.++|.=||.|..+..+++. +.++|+|+|.++.
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~ 55 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQ 55 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHH
Confidence 3333333467889999999999999999875 4579999999976
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.043 Score=41.39 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.+|+|||++-|.-+.+++-.|...|++++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k 62 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK 62 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHH
Confidence 57899999999999999999888889999999977
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.011 Score=43.39 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=26.1
Q ss_pred chhHHHH-HHhh--ccc----cHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFS-NVFD--HAL----YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~-~~l~--h~~----~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.||+|+| ++.- |+. -...+++.+++.|+|||.++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 3788877 4332 332 34568899999999999999985
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.86 Score=39.80 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=59.6
Q ss_pred CeEEEECCCCCHHHHHHHHcC---------------------CCcEEEecCCCC--------------------------
Q 025148 112 SKALCIGARVGQEVEALKRVG---------------------VSDSVGIDLVPY-------------------------- 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~gvD~s~~-------------------------- 144 (257)
.+||.||-|.|.-...++..- ..+++.||+.+=
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999987666654311 137899998722
Q ss_pred --------CCcEEEecCCCCCCCC-------CchhHHHH----H--HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDD-------ETFDFEFS----N--VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~-------~~fD~V~~----~--~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.|+..+..++ .+.|+|.. | .-+.+....+++..+-..++||-.|+|..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 3467777877765432 24677622 2 33445566789999999999999888764
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.072 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q 025148 178 DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+++|+|||||.+++-.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 478899999999999888643
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.78 Score=38.02 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHH-HHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFE-FSN- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V-~~~- 169 (257)
+.+.++.||||-.+++..+|.+. ....+++.|+++. .+.+..+|....--.++.+|.| +++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 44667999999999999999886 4567899999987 3455666664332234468874 553
Q ss_pred --HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 170 --VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 170 --~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
.+ -.+.+++-.+-|+.=-.++++ |+. ....+++++...+|....+
T Consensus 95 GG~l-----I~~ILee~~~~l~~~~rlILQ-Pn~------------~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 95 GGTL-----IREILEEGKEKLKGVERLILQ-PNI------------HTYELREWLSANSYEIKAE 141 (226)
T ss_pred cHHH-----HHHHHHHhhhhhcCcceEEEC-CCC------------CHHHHHHHHHhCCceeeee
Confidence 11 225666666666643356654 332 3667888888887754443
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.21 Score=45.01 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=57.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCC-C-----CC-CCCchhHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHR-Q-----PF-DDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~-~-----~~-~~~~fD~V~ 167 (257)
..+.++.+||.+|||. |..+..+++. +..+++++|.+++.. .++...-.+ . .+ .+..+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3457788999999987 7787777775 444699999876521 111111110 0 11 122466654
Q ss_pred HHH------------hhcc----ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNV------------FDHA----LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~------------l~h~----~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+ +.|. .++...+.++.+.|+++|.+++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 422 1122 345668899999999999998763
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.08 Score=46.07 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~ 144 (257)
.-++||||||...+.-.|.. ....+++|+|+++.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~ 137 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK 137 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH
Confidence 45899999999877655543 22349999999966
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.4 Score=44.86 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=75.4
Q ss_pred CCCChHHHHHHHhhhcCCccccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C----C
Q 025148 59 GYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-G----V 133 (257)
Q Consensus 59 ~~~~y~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~ 133 (257)
..+..++|.-+..+..-+...-++++.+ ...+++..++. ..+..+|.|-.||+|.+.....+. + .
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~-------~v~~liv~~l~---~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~ 214 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTPR-------EVSELIVELLD---PEPRNSIYDPACGSGGMLLQAAKYLKRHQDE 214 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCChH-------HHHHHHHHHcC---CCCCCeecCCCCchhHHHHHHHHHHHhhccc
Confidence 4455556655544554444433443322 12233333221 245669999999999887766553 1 2
Q ss_pred CcEEEecCCCC------------CC----cEEEecCCCCCC-----CCCchhHHHHH---H-hhc-------cc------
Q 025148 134 SDSVGIDLVPY------------PP----LVIEGDFHRQPF-----DDETFDFEFSN---V-FDH-------AL------ 175 (257)
Q Consensus 134 ~~v~gvD~s~~------------~~----~~~~~d~~~~~~-----~~~~fD~V~~~---~-l~h-------~~------ 175 (257)
..++|.|+++. .+ ....+|-..-|. ..+.||+|++| . -.+ ..
T Consensus 215 ~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~ 294 (489)
T COG0286 215 IFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFF 294 (489)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccc
Confidence 57899998765 12 223333333332 23668887665 1 111 10
Q ss_pred ---------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 ---------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ---------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
....+++.+...|+|||+..|.+|.
T Consensus 295 ~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 295 YGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred cCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 1146789999999999988887764
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.86 Score=43.27 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=33.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY 144 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~ 144 (257)
-.++.++..|||+||.+|.+....++. + ..-|+|+|+.|.
T Consensus 39 y~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 39 YKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred hccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 345688899999999999999988874 3 357899999876
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.079 Score=44.78 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCCC--eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 108 LSNES--KALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 108 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
++++. +|||.=+|.|..+..++..|. +|+++|-++.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~ 121 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPV 121 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHH
Confidence 46666 899999999999999999875 6999999865
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.21 Score=38.82 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=43.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
++.++.+|+|+|.|.+....++.+....+|+++++- ...+...|+...++.|-.+-+|+-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee
Confidence 455799999999999999999887668899999865 345566666665555433333433
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.2 Score=37.52 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC--------------CCcEEEecCCCCCCC---CCchhHHHHHHh
Q 025148 110 NESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFD---DETFDFEFSNVF 171 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~---~~~fD~V~~~~l 171 (257)
.|.+||-+|=..-. +..++- ....+|+.+|+++. ++.....|+.+ |+| .++||+++++--
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCC
Confidence 57899999965432 233332 34459999999966 45667777765 333 378999988722
Q ss_pred hccccHHHHHHHHHHhccCCc-EEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 172 DHALYPDKFVMEIERTLKPGG-VCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
+-+.-..-++......||..| ..++.....+. ....-..+++.+.+.|+.....+.+|.
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-------s~~~~~~~Q~~l~~~gl~i~dii~~Fn 181 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-------SPDKWLEVQRFLLEMGLVITDIIPDFN 181 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---------HHHHHHHHHHHHTS--EEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-------cHHHHHHHHHHHHHCCcCHHHHHhhhc
Confidence 222333467777888888766 55555432110 000123577888888987666665554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.06 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q 025148 178 DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.++.|+|||||.+++..
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEc
Confidence 478899999999999999864
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.13 Score=43.53 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=60.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
+....+|+|||||---++...... +...++|+||+.. ...+...|...-+ +....|+.+. -++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 455789999999988887765543 4569999999966 3345566666543 3456888655 344
Q ss_pred hccccHHH-HHHHHHHhccCCcEEEEEeccCCC---cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 DHALYPDK-FVMEIERTLKPGGVCVLHVALSKR---ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ~h~~~~~~-~l~~~~r~LkpgG~l~i~~~~~~~---~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+-+...+. .--++...+. .=.++++.|...- ...+.. .....+..+....++.
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~---~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQ---TYSAWFEALAAERGWI 238 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHH---CHHHHHHHHCCTTCEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCcccccc---CHHHHHHHhcccCCce
Confidence 43332221 1122233332 1267778774321 111111 0234566666677765
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.19 Score=48.78 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=46.6
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..+|+++.+.|.--.+| +++++++.|.++|||.+.-.+ +...+++-+.+.||. +....||
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------------~a~~vr~~l~~~GF~-v~~~~~~ 228 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------------SAGFVRRGLQEAGFT-VRKVKGF 228 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------------hHHHHHHHHHHcCCe-eeecCCC
Confidence 34777776655544444 478999999999999988544 466788889999995 4466788
Q ss_pred CCce
Q 025148 237 GLDT 240 (257)
Q Consensus 237 ~~~~ 240 (257)
+-.+
T Consensus 229 g~kr 232 (662)
T PRK01747 229 GRKR 232 (662)
T ss_pred chhh
Confidence 7543
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.26 Score=43.84 Aligned_cols=94 Identities=20% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc---C--CCcEEEecCCCC---------------CCcEEEecCCCC---------CC
Q 025148 108 LSNESKALCIGARVGQEVEALKRV---G--VSDSVGIDLVPY---------------PPLVIEGDFHRQ---------PF 158 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~gvD~s~~---------------~~~~~~~d~~~~---------~~ 158 (257)
++++++|||+.+.+|.=+..|.+. . .+.|++-|.+.. ...+...++... +.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 489999999999999988777763 1 237899898865 112222222222 12
Q ss_pred CCCchhHHHHH-------HhhccccH-----------------HHHHHHHHHhccCCcEEEEEeccC
Q 025148 159 DDETFDFEFSN-------VFDHALYP-----------------DKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 159 ~~~~fD~V~~~-------~l~h~~~~-----------------~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
.-..||-|+|+ ++.+..+. .+.+..-.+.||+||.++-+++..
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 23457766543 33333221 245677889999999999998743
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.088 Score=45.42 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~ 165 (257)
+.+.+++|-||-|.|...+....+ ...++.-+|++.. .+....+|...+ ....++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 356689999999999998877765 2346777777644 345555555433 344678999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+.+.-+-+. ..+..++.+.+.||+||+++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8664222221 23356788999999999999874
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.53 Score=40.10 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=58.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHHHHhhcccc
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~ 176 (257)
+..+.+|+...|+|+-+|.++-.|.+++- .|++||.-+- .+.....|...........|-.+|+..| .
T Consensus 206 ~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE---k 281 (358)
T COG2933 206 DKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE---K 281 (358)
T ss_pred hhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc---C
Confidence 34467899999999999999999998765 9999997654 3455555655553334567777776443 4
Q ss_pred HHHHHHHHHHhccCC
Q 025148 177 PDKFVMEIERTLKPG 191 (257)
Q Consensus 177 ~~~~l~~~~r~Lkpg 191 (257)
|.++-+-|..+|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 666666666666543
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.41 Score=42.27 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=68.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCCCCCC-
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHRQPFD- 159 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~~~~~- 159 (257)
....++|+.|.|-=.|||.+....+..|. -|+|.||+-. ...+..+|..+.++-
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 44568999999999999999988888775 9999999844 234566676666543
Q ss_pred CCchhHHHHH----Hh---------------------hcccc---------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 160 DETFDFEFSN----VF---------------------DHALY---------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 160 ~~~fD~V~~~----~l---------------------~h~~~---------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+..||.|+|+ += .|++. ....+.-..+.|.-||++++..|.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 4578988875 21 13321 123567788999999999999874
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.48 Score=45.63 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=60.1
Q ss_pred eEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC----------------C--------CcEEEecCCCCCCCC---
Q 025148 113 KALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY----------------P--------PLVIEGDFHRQPFDD--- 160 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~----------------~--------~~~~~~d~~~~~~~~--- 160 (257)
.|+=+|+|.|-+.....+. + ..+|++|+-|+. + +.++..|+.++..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999987665432 2 358999999954 1 577888988875332
Q ss_pred --------CchhHHHHHHhhccccHH---HHHHHHHHhccC----CcE
Q 025148 161 --------ETFDFEFSNVFDHALYPD---KFVMEIERTLKP----GGV 193 (257)
Q Consensus 161 --------~~fD~V~~~~l~h~~~~~---~~l~~~~r~Lkp----gG~ 193 (257)
+++|+|+|..|--+.|-+ +.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999998777666543 688888888887 786
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.73 Score=40.12 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC--------cEEEecCCCC------CCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP--------LVIEGDFHRQ------PFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~--------~~~~~d~~~~------~~~~~~fD~V~~~ 169 (257)
...+.++.+||..|||. |..+..+++....+|++++.++... ..+..+-... ....+.+|+|+..
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 33467788999988763 6666677775445899998876521 1111111100 0122345554432
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+- ....++++.+.|+++|.++...
T Consensus 240 ~g-----~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 240 VG-----TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CC-----CHHHHHHHHHHhhcCCEEEEEC
Confidence 11 1357888999999999988753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.087 Score=44.17 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=38.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCC-CCCCCCchhHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHR-QPFDDETFDFE 166 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~-~~~~~~~fD~V 166 (257)
.+|||.=||-|..+..++..| ++|++++-|+. .+.++.+|..+ +..++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 389999999999999999876 49999999965 35677787766 35567899998
Q ss_pred HHH-Hhh
Q 025148 167 FSN-VFD 172 (257)
Q Consensus 167 ~~~-~l~ 172 (257)
+.+ .+.
T Consensus 156 Y~DPMFp 162 (234)
T PF04445_consen 156 YFDPMFP 162 (234)
T ss_dssp EE--S--
T ss_pred EECCCCC
Confidence 765 443
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.37 Score=45.22 Aligned_cols=90 Identities=23% Similarity=0.251 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCC-------------C--------C
Q 025148 109 SNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQ-------------P--------F 158 (257)
Q Consensus 109 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~-------------~--------~ 158 (257)
.++.+|+=+|||. |..+...++.-+++|+++|.+++ ...+...+..+. + +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 4688999999998 66666666653348999999976 223222222110 0 0
Q ss_pred CC--CchhHHHHHHhh-ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 DD--ETFDFEFSNVFD-HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 ~~--~~fD~V~~~~l~-h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ +.+|+|+..+.. .-..|.-+.+++.+.+||||+++...
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 246776554322 11234333599999999999977653
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.87 Score=38.93 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc------CCCcEEEecCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV------GVSDSVGIDLVPY 144 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~ 144 (257)
++..+...+++.+...++|+|||.|.++.++++. ....++.||-...
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 4445555777788889999999999999999873 2457889998643
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=89.49 E-value=2 Score=34.18 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=65.1
Q ss_pred EECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------------CC-cEEEecCCCCC----CCCCchhHHHH
Q 025148 116 CIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------------PP-LVIEGDFHRQP----FDDETFDFEFS 168 (257)
Q Consensus 116 DiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------------~~-~~~~~d~~~~~----~~~~~fD~V~~ 168 (257)
=||=|.-.++..|++. + ..++++.-.... .+ .....|+..+. ...+.||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666667777764 4 557777655533 11 12233444442 35678998876
Q ss_pred H--Hhh--------cc----ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 169 N--VFD--------HA----LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 169 ~--~l~--------h~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
| ... .+ .-...+++.+.++|+++|.+.|+...... | +.-.+..+-.+.|+......
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---y------~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---Y------DSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---C------ccccHHHHHHhcCCEEEEEe
Confidence 5 111 01 11235778999999999999999865542 2 33356677777887655543
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.51 Score=38.65 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..++..++.. .-.+|+.|||.=||+|..+.+..+.+. +.+|+|+++.
T Consensus 178 ~~l~~~lI~~-~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~ 224 (231)
T PF01555_consen 178 VELIERLIKA-STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEE 224 (231)
T ss_dssp HHHHHHHHHH-HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHH
T ss_pred HHHHHHHHHh-hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHH
Confidence 4455555533 347799999999999999999888776 8999999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.23 Score=42.86 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=42.1
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCC--CCchhHHHH
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFD--DETFDFEFS 168 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~--~~~fD~V~~ 168 (257)
+++|+-||.|.....+.+.|...+.++|+++. ......+|+.++... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEe
Confidence 68999999999999998888767889999976 223567777776532 246898743
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.32 Score=36.70 Aligned_cols=68 Identities=26% Similarity=0.429 Sum_probs=44.1
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..||+|+-+.+.--.+| .++++++.+.++|||.+.-.+ ....+++-+.+.||. +....||
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------~a~~Vr~~L~~aGF~-v~~~~g~ 112 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS---------------SAGAVRRALQQAGFE-VEKVPGF 112 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------BHHHHHHHHHCTEE-EEEEE-S
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------chHHHHHHHHHcCCE-EEEcCCC
Confidence 34555544433333333 478999999999999876533 356788999999997 5677799
Q ss_pred CCceEEEE
Q 025148 237 GLDTEVVF 244 (257)
Q Consensus 237 ~~~~~vv~ 244 (257)
+-.++++.
T Consensus 113 g~Kr~~~~ 120 (124)
T PF05430_consen 113 GRKREMLR 120 (124)
T ss_dssp TTSSEEEE
T ss_pred CCcchheE
Confidence 86655544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.84 Score=40.75 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEEEe----cCCCCCCC-----------C-CchhHHHHH
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVIEG----DFHRQPFD-----------D-ETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~~~----d~~~~~~~-----------~-~~fD~V~~~ 169 (257)
...+++|+=+|||+ |.++..+++. |..+|+.+|.+++....... +....+-. . ..+|+++-
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie- 244 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE- 244 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE-
Confidence 34555999999998 7777777774 77899999999873221111 10011101 0 13554322
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
... ...++..+.+.+++||.+++.-
T Consensus 245 ---~~G-~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 245 ---AVG-SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred ---CCC-CHHHHHHHHHHhcCCCEEEEEe
Confidence 122 2358899999999999988753
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.44 Score=42.08 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEe---cCCCCCCCCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEG---DFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~---d~~~~~~~~~~fD~V~~~~l~h 173 (257)
..++++||=+|||. |..+..+++. +..+|+++|.+++.. .++.. +..+.....+.+|+|+..
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 34688999999864 4455555554 544789999886621 11111 111111011235655432
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
...+ ..++...+.|++||.+++.
T Consensus 243 ~G~~-~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 SGHP-SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCH-HHHHHHHHHhhcCCEEEEE
Confidence 2222 4677888999999998875
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.77 Score=39.75 Aligned_cols=47 Identities=13% Similarity=-0.013 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..++..++ +..-.+|+.|||-=||+|..+.+..+.+. +.+|+|++++
T Consensus 195 ~~L~erlI-~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~ 241 (284)
T PRK11524 195 EALLKRII-LASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSE 241 (284)
T ss_pred HHHHHHHH-HHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHH
Confidence 34444444 33347899999999999999999888775 9999999875
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.49 Score=39.25 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=43.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHHHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~l~ 172 (257)
....|+|.-||.|..+...+..+ ..|++||+++..+.....+++-...++ ..++|..+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~~-rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVPD-RITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCCc-eeEEEechHHH
Confidence 45689999999988888777765 489999999886655555655555555 56666555553
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.30 E-value=1.6 Score=38.42 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=53.3
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCCCCcE--------EEecCCCC-----------CCCCCchh
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPYPPLV--------IEGDFHRQ-----------PFDDETFD 164 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~--------~~~d~~~~-----------~~~~~~fD 164 (257)
.-.+.|.+||-+|+|+ |..+...++ .|..+|+.+|+++.+.+. +.-+.... -+.+..+|
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 3458899999999998 666655566 488899999999873211 11111100 01112244
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+..+ -.+..++.....+|.||.+++..
T Consensus 245 ~~~dCs-----G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 245 VTFDCS-----GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred eEEEcc-----CchHHHHHHHHHhccCCEEEEec
Confidence 432210 12356777788999999977764
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.92 Score=37.96 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++ +..-.+|+.|||-=||+|..+....+.+. +.+|+|++++
T Consensus 151 ~l~~~~i-~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~ 196 (227)
T PRK13699 151 TSLQPLI-ESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQ 196 (227)
T ss_pred HHHHHHH-HHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHH
Confidence 4444444 33346889999999999999999888765 9999999864
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=85.28 E-value=0.17 Score=38.95 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.0
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+++.+.+.|+|||.+++.+.
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHhhccCCEEEEEEe
Confidence 678899999999999998863
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=85.11 E-value=5.2 Score=34.92 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY 144 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~ 144 (257)
+++.+.....++++..+|.=-|.|..+..+.+.. .++++|+|-++.
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~ 59 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQ 59 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHH
Confidence 3444444455778999999999999999988862 467999999865
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.73 E-value=1.2 Score=37.23 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=25.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~ 144 (257)
.++-++||||.|...+.-.+--+ |+ +.+|.|+++.
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~ 113 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQ 113 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHH
Confidence 45678999999977665555432 55 8999999865
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.39 E-value=1 Score=41.21 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=27.3
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.|||||+|||.++....+.|.-.|++++.-..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkP 100 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKP 100 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhch
Confidence 68999999999999988887668999986543
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.2 Score=39.98 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=29.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.-..++|+|+|.|.++..++-..+..|.|||-|..
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence 34689999999999999998765569999999843
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.15 E-value=3.2 Score=34.51 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=51.3
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC-------CCCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF-------DDETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~-------~~~~fD~V~~~~ 170 (257)
..+.++.+||..|+|+ |..+..+++....+|++++.++..... ...+..+... ..+.+|+++..+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 3347789999999986 555555665434699999887542110 0011111111 123466654321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ...+..+.+.|+++|.++...
T Consensus 210 ----~~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 210 ----GG-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ----CC-HHHHHHHHHhcccCCEEEEEc
Confidence 11 145677888999999988754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.69 E-value=5.6 Score=32.46 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC----------CCcEEEecCCCCCC-------CCCchhH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY----------PPLVIEGDFHRQPF-------DDETFDF- 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~----------~~~~~~~d~~~~~~-------~~~~fD~- 165 (257)
.+.+.|+|+|.-.|.-+.+.+.. | ..+|+++|++-. .+.+++++..+... .++.--+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 35679999999998887777653 3 258999999854 34566665554321 1111111
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+-++-||....-..++-+.++|.-|-++++...
T Consensus 148 vilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 148 VILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 2224445555455667777889999999998753
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=83.43 E-value=1 Score=39.25 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEEEe----cCCCCCCCCCchhHHHHHHhhccccHHHHHH
Q 025148 109 SNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVIEG----DFHRQPFDDETFDFEFSNVFDHALYPDKFVM 182 (257)
Q Consensus 109 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~~~----d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~ 182 (257)
.+++++|=+|||. |.++..+++. |...|+++|.++........ |..+. ....+|+|+-.+- . ...++
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G----~-~~~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG----D-PSLID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC----C-HHHHH
Confidence 3577899999865 5566666664 54347778877552211111 11110 1234776654321 1 24567
Q ss_pred HHHHhccCCcEEEEE
Q 025148 183 EIERTLKPGGVCVLH 197 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~ 197 (257)
.+.+.|++||.+++.
T Consensus 216 ~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 216 TLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHhhhcCcEEEEE
Confidence 888999999998865
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.96 E-value=0.9 Score=40.19 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=49.8
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHH--cCCCcEEEecCCCCCCcEEE-ecCC-CC-CCCC-CchhHHHHHHhhcccc--HH
Q 025148 108 LSNESKALCIGARV-GQEVEALKR--VGVSDSVGIDLVPYPPLVIE-GDFH-RQ-PFDD-ETFDFEFSNVFDHALY--PD 178 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~--~~~~~v~gvD~s~~~~~~~~-~d~~-~~-~~~~-~~fD~V~~~~l~h~~~--~~ 178 (257)
.+++++||=+|||. |..+..+++ .+..+|+++|.++....... .+.. .. ...+ ..+|+|+-. ... -.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~----~G~~~~~ 236 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFEC----VGGRGSQ 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEEC----CCCCccH
Confidence 46789999999865 444444444 24568999998876322211 0100 00 1111 135655432 211 23
Q ss_pred HHHHHHHHhccCCcEEEEE
Q 025148 179 KFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~ 197 (257)
..+.+..+.|++||.+++.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHHHhCcCCcEEEEE
Confidence 5788889999999998864
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=82.95 E-value=1 Score=40.46 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEe
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEG 151 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~ 151 (257)
+.+...+.+..+.+++...|+|.|-|......+.. +...-+|+++... .+..+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 34444455666788999999999999999988875 4456789988866 1233333
Q ss_pred cCCCCCCC---CCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 152 DFHRQPFD---DETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 152 d~~~~~~~---~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++.+...- ....++|+.|-+-.-++...-+.++..-+++|-+++=.-|
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 33321110 0112233333222222222334688888999888776543
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=81.69 E-value=8 Score=30.14 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCC-CCCCCchhHH-HHHHhhccc--
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQ-PFDDETFDFE-FSNVFDHAL-- 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~-~~~~~~fD~V-~~~~l~h~~-- 175 (257)
.-.+-|||+|=|+|..-..|.+. +..+|+.+|-.-. .-.++.+|+.+. +. -..+ ...++-|..
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~----~~~~g~~a~laHaD~G 102 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPA----LARFGAGAALAHADIG 102 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHH----HHHH-S-EEEEEE---
T ss_pred CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHH----HHhcCCceEEEEeecC
Confidence 34478999999999999999985 7779999996522 234555555432 10 0000 001333432
Q ss_pred --cHHH------HH-HHHHHhccCCcEEEEEec
Q 025148 176 --YPDK------FV-MEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 --~~~~------~l-~~~~r~LkpgG~l~i~~~ 199 (257)
++++ .+ .-+..+|.|||+++-..|
T Consensus 103 ~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 103 TGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp -S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 2221 12 346678999999887554
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=81.12 E-value=0.99 Score=42.37 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=52.1
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCC-------------C--------CC
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQ-------------P--------FD 159 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~-------------~--------~~ 159 (257)
++.+++=+|||. |..+..++..-.++|+++|.++. ...++..+..+- + ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 467999999987 45555555543357999998865 222322232110 0 11
Q ss_pred --CCchhHHHHHH-hhccccHHHHHHHHHHhccCCcEEEE
Q 025148 160 --DETFDFEFSNV-FDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 160 --~~~fD~V~~~~-l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
-..+|+|+..+ +..-..|.-..+++.+.+|||++++-
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 13467766543 33334554466889999999998763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=80.85 E-value=0.57 Score=41.04 Aligned_cols=38 Identities=16% Similarity=-0.003 Sum_probs=27.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
..++++..+|.=-|.|..+..+.+. +.++++|+|.++.
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~ 55 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPE 55 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHH
Confidence 3577889999888999999888874 5589999999876
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=80.82 E-value=1.5 Score=38.84 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCC---CC--------CCcEEEecCCCCCC----CCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLV---PY--------PPLVIEGDFHRQPF----DDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s---~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l 171 (257)
..++.+||-+|||. |.++..+++....+|++++.+ +. ....+ +..+.+. ..+.+|+|+-.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc-
Confidence 35788999999865 555666666534489999863 32 11211 1111110 112356554422
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+ ..+.+..+.|++||.+++.
T Consensus 247 ---g~~-~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 ---GVP-PLAFEALPALAPNGVVILF 268 (355)
T ss_pred ---CCH-HHHHHHHHHccCCcEEEEE
Confidence 112 3678888999999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=80.72 E-value=4.3 Score=36.01 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=49.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~ 167 (257)
...++++++||=.|||. |..+..+++. |..+|+++|.++....+ ...+..+.. .....+|+|+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34457889999999754 4455555664 44359999987652111 001111110 0112244443
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
- ....+ ..+++..+.+++||.+++.
T Consensus 251 d----~~g~~-~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 D----AVGRP-ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred E----CCCCH-HHHHHHHHHhccCCEEEEE
Confidence 2 22222 4677788999999998864
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=80.56 E-value=3.8 Score=30.95 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCeEEEECCCCCHH-HHHHHHcCCCcEEEecCCCC----CCcEEEecCCC
Q 025148 110 NESKALCIGARVGQE-VEALKRVGVSDSVGIDLVPY----PPLVIEGDFHR 155 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~-~~~l~~~~~~~v~gvD~s~~----~~~~~~~d~~~ 155 (257)
..++|+|||-|.=.- +..|.+.| .+|+++|+++. .+.++.-|+.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~~a~~g~~~v~DDif~ 62 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPRKAPEGVNFVVDDIFN 62 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECcccccccCcceeeecccC
Confidence 345999999997544 55666667 59999999988 66777777765
|
; PDB: 2K4M_A. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.52 E-value=4.4 Score=35.61 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=49.1
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
..++++.+||=.|+|. |..+..+++....+|+++|.+++.... ...+..+ ...+.+|+++- ...
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~--~~~~~~d~~i~~~~~----- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYD--TPPEPLDAAILFAPA----- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccc--cCcccceEEEECCCc-----
Confidence 4467889999999753 444455555434589999888652110 0011111 11234675322 211
Q ss_pred HHHHHHHHHHhccCCcEEEEE
Q 025148 177 PDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..+....+.|++||.+++.
T Consensus 234 ~-~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G-GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H-HHHHHHHHhhCCCcEEEEE
Confidence 2 4678888999999998774
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=80.51 E-value=3.9 Score=34.86 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=52.1
Q ss_pred HHHHHHHHHHH-hhcCCCCCeEEEECCCCCH----HHHHHHHc-C-CCcEEEecCCCC---CCcEEEecCCCCCCCCCch
Q 025148 94 VFAKFFDDLKR-KKLLSNESKALCIGARVGQ----EVEALKRV-G-VSDSVGIDLVPY---PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 94 ~~~~~~~~l~~-~~~~~~~~~vLDiGcG~G~----~~~~l~~~-~-~~~v~gvD~s~~---~~~~~~~d~~~~~~~~~~f 163 (257)
.+.++.+-+-. ......+++||-+|+|+-. -...|++. + .+-++-.|+.+. ....+.+|......+ .+|
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~~-~k~ 122 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMPP-DKF 122 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEES-S-E
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCCC-Ccc
Confidence 34444544422 2223667899999998743 12334443 2 346677777654 445667777776544 569
Q ss_pred hHHHHHHhh----ccc----cHH----HHHHHHHHhccCCcEEEEEec
Q 025148 164 DFEFSNVFD----HAL----YPD----KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 164 D~V~~~~l~----h~~----~~~----~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+|+|+... ++. ..+ -+..-+...|+-||.+.+-+-
T Consensus 123 DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 123 DLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 999997551 111 111 234556778999999999763
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-09
Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 88 WDRKIQVF----AKFFDDLKRKKLLSNESKALCIGARV-------GQEVEALKRVGVSDS 136
WD + + + +D R ++ + + A V G L R G +
Sbjct: 20 WDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-YKA 78
Query: 137 VGIDLVP-----------YPPL-VIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFVME 183
VG+D+ P L I+GD PF++E F+ + N + P + + E
Sbjct: 79 VGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNE 138
Query: 184 IERTLKPGG-VCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236
I+R LK G C+ + + + + S L+ + E ++ K GF
Sbjct: 139 IKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGF 192
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 29/171 (16%)
Query: 86 RDWDRKIQV-FAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144
+++R V + +L+ K L E + + IG G+ LK +G++
Sbjct: 22 NEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSER 76
Query: 145 --------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCV 195
V++G P DE+FDF P++ + E R LK GG +
Sbjct: 77 MAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 136
Query: 196 LHV---------ALSKRADKYSAND---LFSVKPLVKLFKRS--EMVRVRK 232
+ + K +K FS + L+ L +++ E +V +
Sbjct: 137 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 8e-09
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 129 KRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERT 187
+ G++D++ V G F P +D ++DF +S F H+ K E R
Sbjct: 126 NQAGLADNIT---------VKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARV 176
Query: 188 LKPGGVCVLHV----------ALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234
LKP GV + ++ D+ +D+ S+ L K +V +R
Sbjct: 177 LKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 148 VIEGDFHRQPFDDETFDFEFS-NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRA 204
+ +GD + PF DE+ F +S H D + + EI+R LKPGG+ ++ L+ +
Sbjct: 75 ISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF-LTTKD 133
Query: 205 DKYSANDLFSVKPLVKLFKRSEMVR 229
++Y+ + ++L + +++
Sbjct: 134 ERYNKGEKIGEGEFLQLERGEKVIH 158
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 22/121 (18%)
Query: 127 ALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDK--FVME 183
A +RV ++ + D + F + FD +S + +K +
Sbjct: 94 ANERVSGNNKII---------FEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQK 144
Query: 184 IERTLKPGGVCVLH----------VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233
+ LKP G ++ K K L +V+ + V
Sbjct: 145 CYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204
Query: 234 D 234
D
Sbjct: 205 D 205
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 3e-08
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 138 GIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197
DL P V D + P +DE+ D + F+ E R LKPGG +L
Sbjct: 91 CFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGG--LLK 148
Query: 198 VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAKSLNAIQ 255
VA + V+ ++ + V K F+K L +
Sbjct: 149 VAEVS-------SRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPPLVGPK 199
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 126 EALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFVMEI 184
G+++ V D PF+D +FD ++ H + + E+
Sbjct: 102 ARATAAGLANRVTFSY---------ADAMDLPFEDASFDAVWALESLHHMPDRGRALREM 152
Query: 185 ERTLKPGGVCVLH 197
R L+PGG +
Sbjct: 153 ARVLRPGGTVAIA 165
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-07
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLV 142
++++ +I+ K + K L + VG L+ G + VG+D+
Sbjct: 16 INSQEYRSRIETLEPLL-----MKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDIS 69
Query: 143 PY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPD--KFVMEIE 185
I GD + F+D+TFD+ + H + + E+
Sbjct: 70 EDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVR 129
Query: 186 RTLKPGGV 193
R LKP G
Sbjct: 130 RVLKPSGK 137
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-07
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 126 EALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIE 185
E + +D V I G PF +E D +S + + ++ + E
Sbjct: 87 ENAVKANCADRVK---------GITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWS 137
Query: 186 RTLKPGGVCVLH 197
+ LK GG +
Sbjct: 138 KYLKKGGFIAVS 149
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-07
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 112 SKALCIGARVGQEVEALKRVGVSDSV-GIDLVP--------------YPPL-VIEGDFHR 155
+K L G +G + L + + ID+ P + ++ +
Sbjct: 39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98
Query: 156 QPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLH 197
PF+D +FD F V +H P++ + +++ LKPGG +
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-07
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 29/165 (17%)
Query: 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQ 156
K + + L IG G A+K G GI+ P V+ GD
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAEQAKEKLDHVVLGDIETM 85
Query: 157 --PFDDETFDF-EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV----ALSKRADKYSA 209
P+++E FD F +V +H P + +++ +K GV + + +S A +
Sbjct: 86 DMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAG 145
Query: 210 NDLFSVKPL-----VKLFKRSEMVR--------VRKVDGFGLDTE 241
N ++ L ++ F +EM+R + KVD +D +
Sbjct: 146 NWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYVDHK 190
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-07
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 126 EALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIE 185
++ G+ + V I G PF +E D +S + + ++ + E
Sbjct: 87 RNARQSGLQNRVT---------GIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWR 137
Query: 186 RTLKPGGVCVLH 197
+ LK GG +
Sbjct: 138 KYLKKGGYLAVS 149
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 126 EALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEI 184
+ + ++D + +++GD H P +D D S EI
Sbjct: 84 KNIADANLNDRIQ---------IVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREI 134
Query: 185 ERTLKPGG-VCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227
R LK GG + +K + ++ P K F R +
Sbjct: 135 YRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNI 178
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-06
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 137 VGIDLVP--------YPPL-VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIER 186
++ +P + G D++ D S H + +K E++R
Sbjct: 60 YAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQR 119
Query: 187 TLKPGGVCVL 196
++ G + +L
Sbjct: 120 IIRDGTIVLL 129
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-06
Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 86 RDWDRKIQVFAKFFDDLKRKKLLSNE----SKALCIGARVGQEVEALKRVGVSDSVGIDL 141
++ + + ++ L L +GA G + L VG++
Sbjct: 8 EAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYPQK---VGVEP 64
Query: 142 VP---------YPPL-VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKP 190
P + PF E+FD + ++ ++E R L+P
Sbjct: 65 SEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRP 124
Query: 191 GG---VCVLHVALSKRADKYSANDLFSVKPLV--KLFKRSEMVRVRKVDGF 236
GG V VL ALS A Y V P + R ++ +
Sbjct: 125 GGALVVGVLE-ALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEA 174
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 8e-06
Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 22/175 (12%)
Query: 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP---------YPPLVIEGDF 153
+ + L IG G+ +E K G+ +S+G+D+ + + +
Sbjct: 34 RYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIE 92
Query: 154 HRQPFDDETFDF-EFSNVFDHALYPD--KFVMEIERTLKPGGVCVLHV--ALSKRADKYS 208
+ + D+ D S+ +H + + +K V+ S +
Sbjct: 93 YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF 152
Query: 209 AND-----LFSVKPLVKLFKRS--EMVRVRKVDGFGLDTEVVFRKNAKSLNAIQR 256
D + L + + V++ + T++ + + R
Sbjct: 153 YIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECEELTKLAKIDSNTVSEEVIR 207
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 24/122 (19%)
Query: 126 EALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDK--FVME 183
+ + + D V + + PFD ++ + +Y D E
Sbjct: 158 RRARELRIDDHVRSRV---------CNMLDTPFDKGAVTASWN--NESTMYVDLHDLFSE 206
Query: 184 IERTLKPGGVCVLH-----------VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232
R LK GG V + + + ++ S + ++ + +V
Sbjct: 207 HSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266
Query: 233 VD 234
VD
Sbjct: 267 VD 268
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 148 VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVL-------HVA 199
V++ + ++ P D T DF F F P KF+ E++R KP +
Sbjct: 92 VLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK 151
Query: 200 LSKRADKYSANDLFSVKP 217
+ YS ++ +
Sbjct: 152 GPPPEEVYSEWEVGLILE 169
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 9/136 (6%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 84 TTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCI---GARV-------GQEVEALKRVGV 133
++ + + + + G+ L +G
Sbjct: 5 VSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH 64
Query: 134 SDSVGIDLVP---------YPPL-VIEGDFHRQPFDDETFDFEFSN-VFDHALYPD--KF 180
G++ +P + G + + + H +
Sbjct: 65 -QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDA 123
Query: 181 VMEIERTLKPGGVCVL 196
++ + ++ GG ++
Sbjct: 124 LVALRMAVEDGGGLLM 139
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 28/140 (20%)
Query: 80 RTTWTTRDWDRKI-QVFAKFFDDLKRKKLLSNESKALCIGARV-------GQEVEALKRV 131
+ ++ ++ + A D +L+ + GA++ G+ L +
Sbjct: 11 NNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPR---GAKILDAGCGQGRIGGYLSKQ 67
Query: 132 GVSDSVGIDLVP---------YPPL-VIEGDFHRQPFDDETFDFEFSN--VFDHALYPD- 178
G D +G DL P +P + GD + FD S V L D
Sbjct: 68 GH-DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVM-GFLAEDG 125
Query: 179 --KFVMEIERTLKPGGVCVL 196
+ I R L G V+
Sbjct: 126 REPALANIHRALGADGRAVI 145
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 148 VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVL---------H 197
V++ D P DE+ ++ K + E R LKPGG +
Sbjct: 90 VVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPE 149
Query: 198 VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFR 245
L +R ++A + F V+ + + E+ + G T V R
Sbjct: 150 WTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREVAR 197
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 149 IEGDFHRQPFDDETFDFEF-SNVFDHALYPDKFVMEIERTLKPGGVCVL 196
+ + D + DF +N F + E++R LK G ++
Sbjct: 62 VITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVII 110
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 11/107 (10%)
Query: 148 VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVL-------HVA 199
+G PF D++FD H K V E+ R LK G +L
Sbjct: 73 FQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPV 132
Query: 200 LSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246
L + + + V+ SE + + +
Sbjct: 133 LDEFVNHLN---RLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNL 176
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 148 VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVL 196
++GD + PF DE F H P FV E R LK GG +L
Sbjct: 89 YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 138
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-05
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 17/124 (13%)
Query: 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP---------YPPLVIEGDFHR 155
++ L N + L +G G+ L+ G + V +D V+E
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVKNVVEAKAED 107
Query: 156 QPFDDETFD--FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA-----LSKRADKYS 208
PF F+ +V + DK EI R L P G+ + V L + +K +
Sbjct: 108 LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDA 167
Query: 209 ANDL 212
+ +
Sbjct: 168 WDQI 171
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 118 GARV-------GQEVEALKRVGVSDSVGIDLVP---------YPPLVIE---GDFHRQPF 158
G R+ G G S +G+DL P I D +
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHL 103
Query: 159 DDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVL 196
++FD +S+ + + + + L PGG V
Sbjct: 104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVF 142
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 23/132 (17%)
Query: 88 WDRKIQVFAKFFDDLKRKKL-----LSNESKALCIGARVGQEVEAL-KRVGVSDSVGIDL 141
+D + + F FDD + + L +GA G L ++ + +D+
Sbjct: 17 YDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDM 76
Query: 142 VP------------YPPL-VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDK--FVMEIE 185
+ IE D+ + F+ E +D S H DK
Sbjct: 77 SEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSY 135
Query: 186 RTLKPGGVCVLH 197
LK G+ +
Sbjct: 136 SILKESGIFINA 147
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 149 IEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVL 196
+EGD +D+ +D H P+ + ++ ++K GG +
Sbjct: 77 LEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 124
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 11/99 (11%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 149 IEGDFHRQPFDDETFDFEFSN-VFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRAD 205
+ +++D + V H +F+ + +L+P G+ V+ +++
Sbjct: 133 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 192
Query: 206 KYSAND---LFSVKPLVKLFKRSEMVRVRKVDGFGLDTE 241
D + + ++ + + + + L E
Sbjct: 193 ILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDE 231
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 85 TRDWDRKI-----QVFAKFFDDLKRKKLLSNESKALCIGARV-------GQEVEALKRVG 132
T+ +D + + R L+ L GA++ G + EA+ G
Sbjct: 6 TQAFDDDTLRFYRGNATAYAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAAG 65
Query: 133 VSDSVGIDLVP---------YPPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPD--KF 180
D D P V FH+ D +D +++ H +
Sbjct: 66 F-DVDATDGSPELAAEASRRLGRPVRTMLFHQLDAID-AYDAVWAHACLLHVPRDELADV 123
Query: 181 VMEIERTLKPGGVCVL 196
+ I R LKPGG+
Sbjct: 124 LKLIWRALKPGGLFYA 139
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 149 IEGDFHRQPFDDETFD-----FEFSNVFDHALYPDKFVMEIERTLKPGG-VCVL------ 196
+ F D +FD ++V D + + E+ R LKPG + ++
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSVPDPKER-SRIIKEVFRVLKPGAYLYLVEFGQNW 146
Query: 197 HVALSKRADKYSANDLFSVKPLV 219
H+ L ++ + +
Sbjct: 147 HLKLYRKRYLHDFPITKEEGSFL 169
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.76 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.74 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.74 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.74 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.74 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.73 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.73 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.73 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.72 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.72 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.72 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.71 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.71 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.7 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.7 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.7 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.7 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.69 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.69 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.69 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.68 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.68 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.68 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.68 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.67 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.67 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.67 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.66 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.66 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.66 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.66 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.66 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.66 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.66 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.64 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.64 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.64 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.63 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.63 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.62 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.62 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.62 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.61 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.61 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.61 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.61 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.61 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.6 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.6 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.59 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.59 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.59 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.58 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.58 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.57 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.56 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.56 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.54 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.54 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.53 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.53 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.53 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.52 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.52 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.52 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.52 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.51 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.51 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.51 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.51 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.51 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.5 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.5 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.5 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.5 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.5 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.49 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.49 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.49 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.49 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.48 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.47 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.47 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.46 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.46 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.46 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.46 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.46 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.46 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.45 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.45 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.44 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.44 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.44 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.44 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.43 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.43 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.43 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.42 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.42 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.42 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.42 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.42 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.42 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.42 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.41 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.4 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.4 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.4 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.39 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.39 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.39 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.38 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.38 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.38 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.37 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.37 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.37 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.36 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.36 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.35 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.35 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.34 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.34 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.34 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.33 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.33 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.33 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.33 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.32 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.32 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.32 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.32 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.31 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.31 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.31 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.3 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.29 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.29 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.28 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.28 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.28 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.27 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.27 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.26 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.26 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.24 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.23 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.23 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.22 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.21 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.21 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.2 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.19 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.19 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.18 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.17 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.17 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.16 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.15 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.15 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.14 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.11 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.11 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.1 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.1 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.1 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.1 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.09 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.09 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.07 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.05 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.05 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.05 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.05 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.04 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.04 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.04 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.04 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.03 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.03 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.03 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.02 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.01 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.01 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.01 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.01 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.0 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.99 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.99 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.97 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.96 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.96 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.96 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.95 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.95 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.93 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.92 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.92 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.92 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.91 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.91 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.91 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.86 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.86 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.82 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.81 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.79 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.78 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.77 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.77 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.7 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.68 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.66 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.62 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.61 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.59 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.58 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.56 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.55 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.54 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.54 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.52 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.52 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.51 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.5 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.49 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.48 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.45 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.44 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.42 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.4 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.35 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.35 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.35 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.32 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.27 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.2 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.2 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.19 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.14 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.14 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.14 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.13 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.07 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.04 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.01 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.99 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.82 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.76 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.74 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.62 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.61 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.49 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.3 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.11 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.02 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.5 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.25 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.92 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.12 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.92 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.77 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.72 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.49 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 93.2 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.66 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.17 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.13 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.12 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.73 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.62 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.29 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.18 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.14 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.32 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.25 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.19 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 90.07 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.05 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 89.85 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.82 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.72 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.71 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 89.52 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 89.43 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 89.06 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 88.73 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.68 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 88.64 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 88.62 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.14 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 88.05 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 88.02 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.98 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 87.92 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.84 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 86.94 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 86.6 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 86.57 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.52 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 86.51 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.59 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 85.22 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 85.14 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 84.79 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.78 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 84.71 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 84.25 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 83.73 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 83.64 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 83.4 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.03 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 82.72 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 82.65 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 82.54 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 81.29 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 81.22 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 80.97 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 80.74 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 80.47 |
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=143.37 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=112.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
.+.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+. ++.+..+|+.++++++++||+|++
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 113 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA 113 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEee
Confidence 45678899999999999999998863 469999999965 467899999999999999999988
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC-cCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcc
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD-KYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKN 247 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~ 247 (257)
++++|+.++..+++++.++|||||.+++..+...... .......++.+++.+++++.||..+....-......++.+|.
T Consensus 114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 5999999999999999999999999999876443211 112225578999999999999987776552222345666664
Q ss_pred c
Q 025148 248 A 248 (257)
Q Consensus 248 ~ 248 (257)
.
T Consensus 194 ~ 194 (219)
T 3dh0_A 194 K 194 (219)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-19 Score=146.85 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=101.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
.++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+. +++++||+|++ ++++|+.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 4677999999999999999998765 9999999966 467888998887 56789999988 69999999
Q ss_pred HHHHHHHHH-HhccCCcEEEEEeccCCCc----------C-----------cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 177 PDKFVMEIE-RTLKPGGVCVLHVALSKRA----------D-----------KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 177 ~~~~l~~~~-r~LkpgG~l~i~~~~~~~~----------~-----------~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.++++++. |+|||||++++.+|+.... + .......++..++.+++++.||..+...
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999999 9999999999999765421 0 1112256799999999999999766554
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=147.30 Aligned_cols=133 Identities=15% Similarity=0.136 Sum_probs=104.9
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC-CCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FDDE 161 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~~~ 161 (257)
+..++... ..++.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.++.+|+.+++ ++++
T Consensus 58 l~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 58 LDRVLAEM-GPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHHHT-CSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHHHhc-CCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 33443332 3447899999999999999999985 49999999964 3568999999887 7889
Q ss_pred chhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC----------------------cCcCCCCCcCChhHH
Q 025148 162 TFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR----------------------ADKYSANDLFSVKPL 218 (257)
Q Consensus 162 ~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----------------------~~~y~~~~~~~~~~~ 218 (257)
+||+|++ ++++|+.++.++++++.++|||||++++.+++... ........+++..++
T Consensus 136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 9999988 59999999999999999999999999998753211 011222356789999
Q ss_pred HHhcccCCcEEEEEe
Q 025148 219 VKLFKRSEMVRVRKV 233 (257)
Q Consensus 219 ~~~f~~~~~~~~~~~ 233 (257)
.+++++.||..+...
T Consensus 216 ~~~l~~aGf~v~~~~ 230 (285)
T 4htf_A 216 YLWLEEAGWQIMGKT 230 (285)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCceeeee
Confidence 999999999766443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=139.07 Aligned_cols=123 Identities=9% Similarity=0.084 Sum_probs=104.4
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc--cH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL--YP 177 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~--~~ 177 (257)
+.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.++++|+.++++++++||+|++ ++++|+. ++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGEL 120 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTH
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHH
Confidence 78999999999999999999854 9999999965 678899999999998999999988 5999997 89
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCCcCcC----CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKRADKY----SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y----~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++++++.++|||||.+++.++.......+ .....++..++.+++.+.||..+....
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 999999999999999999998755432221 122457899999999999998766554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=143.70 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=102.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------CCcEEEecCCCC--CCCCCchhHHHH-HHhhccccH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------PPLVIEGDFHRQ--PFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------~~~~~~~d~~~~--~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
++++.+|||||||+|.++..+++.+. +|+|+|+|+. .+.+..+|..+. ++++++||+|+| ++++|+.++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 46788999999999999999998754 8999999976 467788888775 788899999998 599999955
Q ss_pred --HHHHHHHHHhccCCcEEEEEeccCCCc-------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 178 --DKFVMEIERTLKPGGVCVLHVALSKRA-------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 178 --~~~l~~~~r~LkpgG~l~i~~~~~~~~-------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
..+++++.++|||||++++.+++.... ........++..++.+++.+.||..+...
T Consensus 118 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 899999999999999999999865431 11122356788999999999999866554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=144.59 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=109.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
.....++....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+..+|+.++++++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 334444444456788999999999999999998864569999999964 3678899999999999
Q ss_pred CchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------CcCCCCCcCChhHHHHhcccCC
Q 025148 161 ETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------DKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
++||+|++ ++++|+.++.++++++.++|||||.+++..+..... ..+....+++..++.+++++.|
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 99999988 599999999999999999999999999987543210 0112345678999999999999
Q ss_pred cEEEEEe
Q 025148 227 MVRVRKV 233 (257)
Q Consensus 227 ~~~~~~~ 233 (257)
|..+...
T Consensus 208 f~~~~~~ 214 (273)
T 3bus_A 208 LVVTSTV 214 (273)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 9876544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=141.69 Aligned_cols=125 Identities=23% Similarity=0.364 Sum_probs=104.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhcc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~ 174 (257)
+.++.+|||||||+|.++..+++.+. +|+|+|+++. ++.++.+|+.++++++++||+|++ ++++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45788999999999999999999854 9999999964 567899999999999999999988 599999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCC-------cCcCC---CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKR-------ADKYS---ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~y~---~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.++.++++++.++|||||.+++.++.... ...+. ....++..++.+++++.||..+...
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 99999999999999999999998853321 00111 1144688999999999999877765
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-18 Score=143.95 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=100.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
...++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.++++++++||+|+++ +
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 346788999999999999999998764 9999999964 3678999999999999999999995 9
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------CcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------DKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++|+.++..+++++.|+|||||++++..+..... ........++..++.+++.+.||..+..
T Consensus 113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 113 AHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 9999999999999999999999999975432110 0011224568889999999999875443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=144.51 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=107.1
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHH
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
..++....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+..+|+.+.++++++||+|
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEE
Confidence 333334445778899999999999999999863459999999974 4678999999999999999999
Q ss_pred HH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----------CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 167 FS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYS----------ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 167 ~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~----------~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++ ++++|+ .++..+++++.++|||||.+++..+.......+. ...+++..++.+++.+.||..+...
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 99 599999 8999999999999999999999876433211111 1145689999999999999776654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=137.35 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=94.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQP 157 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~ 157 (257)
...+.++.+|||+|||+|..+..|++.+. +|+|+|+|+. ++.+.++|+.+++
T Consensus 17 ~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 17 SLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred hcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 33456788999999999999999999875 9999999954 3578899999998
Q ss_pred CCC-CchhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 158 FDD-ETFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 158 ~~~-~~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+++ ++||+|++ .+++|+.. ..+++++++|+|||||++++.+..............++.+++.++|.+ +|....
T Consensus 96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 875 78999998 48888864 456899999999999985554432211111111233588999999998 876443
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-18 Score=133.73 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||+|||+|.++..+++.+. +++|+|+++. ++.+..+| .++++++||+|++ ++++|+.+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC
Confidence 46778999999999999999998765 9999999965 56777777 6778899999988 59999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcC-cCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRAD-KYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
+..+++++.++|||||.+++..+...... .......++.+++.++++ ||..+....-......+++++...
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTS 162 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCC
Confidence 99999999999999999999876443211 111124578999999999 998777665333335677777554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=145.50 Aligned_cols=127 Identities=26% Similarity=0.338 Sum_probs=104.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
.+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+..+|+.++|+++++||+|++ +
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 45788999999999999999999862349999999965 367899999999999999999988 5
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC----------cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD----------KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----------~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++|+.++.++++++.|+|||||.+++..+...... .+....+.+..++.+++.+.||..+...
T Consensus 159 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 159 AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 999999999999999999999999999976432110 1122245588899999999999876654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=137.66 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. ++.+..+|+.+++++ ++||+|++ ++++|+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCH
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCCh
Confidence 467899999999999999999875 49999999975 578999999999888 89999988 59999999
Q ss_pred HHH--HHHHHHHhccCCcEEEEEeccCCCcC------------c-------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PDK--FVMEIERTLKPGGVCVLHVALSKRAD------------K-------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~~--~l~~~~r~LkpgG~l~i~~~~~~~~~------------~-------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+.. +++++.++|||||.+++..+...... . .....+++.+++.+++++.||.......
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 887 99999999999999999976433200 0 0111445889999999999996554443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=142.13 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=103.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.+..+|+.++++++++||+|++ .+++|+.
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 478899999999999999999986669999999964 567899999999998999999988 5999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCC------CcCcCCCC----------------------------CcCChhHHHHh
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSK------RADKYSAN----------------------------DLFSVKPLVKL 221 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~y~~~----------------------------~~~~~~~~~~~ 221 (257)
++.++++++.++|||||.+++.++... ..|.+... +.++..++.++
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 202 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHH
Confidence 999999999999999999999865321 01111100 11288999999
Q ss_pred cccCCcEEEEEec
Q 025148 222 FKRSEMVRVRKVD 234 (257)
Q Consensus 222 f~~~~~~~~~~~~ 234 (257)
++++||..+....
T Consensus 203 l~~aGF~~~~~~e 215 (253)
T 3g5l_A 203 LLKNGFQINSVIE 215 (253)
T ss_dssp HHHTTEEEEEEEC
T ss_pred HHHcCCeeeeeec
Confidence 9999998777664
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-18 Score=146.19 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=101.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
...++.+|||||||+|.++..+++. ..+|+|+|+|+. ++.+..+|+.++++ +++||+|++ .+++|+.
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 3467889999999999999999984 459999999975 57899999999887 578999988 5999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCC---------------cC---cC-CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKR---------------AD---KY-SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------~~---~y-~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++..+++++.++|||||++++.++.... .+ .+ ....+++..++.+++.+.||..+..
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 207 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYA 207 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEE
Confidence 9999999999999999999998875322 00 01 1114568899999999999876543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=142.07 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=102.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...++++.+|||||||+|..+..+++. +.++|+|+|+|+. ++.++++|+.+++++ .||+
T Consensus 65 ~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~ 142 (261)
T 4gek_A 65 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM 142 (261)
T ss_dssp HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEE
T ss_pred HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccc
Confidence 445788999999999999999999875 3468999999965 467899999998874 5999
Q ss_pred HHHH-HhhccccH--HHHHHHHHHhccCCcEEEEEeccCCC-----------------cCcCCCC-------------Cc
Q 025148 166 EFSN-VFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKR-----------------ADKYSAN-------------DL 212 (257)
Q Consensus 166 V~~~-~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~-----------------~~~y~~~-------------~~ 212 (257)
|+++ +++|+.++ ..++++++|+|||||++++....... ...|... ..
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~ 222 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 222 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccC
Confidence 9885 99998744 46899999999999999997532110 0011111 23
Q ss_pred CChhHHHHhcccCCcEEEEEec-CCCCceEEEEEcc
Q 025148 213 FSVKPLVKLFKRSEMVRVRKVD-GFGLDTEVVFRKN 247 (257)
Q Consensus 213 ~~~~~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k~ 247 (257)
++.+++.+++++.||..+.... .+.+. .++-.|.
T Consensus 223 ~s~~~~~~~L~~AGF~~ve~~fq~~nF~-~~iA~K~ 257 (261)
T 4gek_A 223 DSVETHKARLHKAGFEHSELWFQCFNFG-SLVALKA 257 (261)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEEEETTEE-EEEEECC
T ss_pred CCHHHHHHHHHHcCCCeEEEEEEeccEE-EEEEEEc
Confidence 5778889999999998776542 33332 3444443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=144.96 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=102.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||+|||+|.++..+++....+|+|+|+++. ++.+..+|+.++++++++||+|++ ++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 5678899999999999999999872359999999965 367899999999999999999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCc-----------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADK-----------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+ ++.++++++.++|||||++++.++....... +....+++..++.+++++.||..+...
T Consensus 195 l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 195 TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred hhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999 6999999999999999999998764332110 111145688999999999999766554
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-18 Score=141.45 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=106.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
..++ +|||+|||+|.++..+++.+..+++|+|+|+. ++.+.++|+.++++++++||+|++ ++
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence 3444 99999999999999999875569999999964 467899999999999999999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------------cCcC---CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------------ADKY---SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------~~~y---~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++|+.++.++++++.++|||||.+++..+.... .|.. .....++.+++.+++++.||..+..
T Consensus 121 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 121 VFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred HhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 999999999999999999999999998643211 0000 1113446789999999999976655
Q ss_pred ecCCCCceEEEEEccc
Q 025148 233 VDGFGLDTEVVFRKNA 248 (257)
Q Consensus 233 ~~gf~~~~~vv~~k~~ 248 (257)
..... ..-++++|+.
T Consensus 201 ~~~~~-~~~~~~~k~~ 215 (219)
T 3dlc_A 201 ILGDE-GFWIIISKTD 215 (219)
T ss_dssp EEETT-EEEEEEBCCS
T ss_pred EecCC-ceEEEEeccc
Confidence 53222 1235556543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=139.11 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=106.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-H-Hhhccc-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-N-VFDHAL- 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l~h~~- 175 (257)
.++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.++++|+.++++ +++||+|+| . +++|+.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 5678999999999999999998764 9999999965 57899999999887 788999988 4 999995
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEeccCCC---------------------cC-------------cC------------
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHVALSKR---------------------AD-------------KY------------ 207 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------------~~-------------~y------------ 207 (257)
+..++++++.++|||||.+++....... .| .|
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 5567899999999999999996421100 00 00
Q ss_pred C---CCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 208 S---ANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 208 ~---~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
. ...+|+.+++.++++++||..+.....+.....++.+|...
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~ 251 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAK 251 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC-
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCC
Confidence 0 02457899999999999998776655555445666666544
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=141.86 Aligned_cols=130 Identities=19% Similarity=0.149 Sum_probs=103.3
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
++....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+.++|+.++++ +++||+
T Consensus 28 l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 106 (256)
T 1nkv_A 28 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDV 106 (256)
T ss_dssp HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCE
Confidence 3334446788999999999999999999864459999999964 47789999999887 789999
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc---------C-cCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA---------D-KYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------~-~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|+| ++++|+.++.++++++.++|||||.+++..+..... + ......+++..++.+++.+.||..+..
T Consensus 107 V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 107 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 988 599999999999999999999999999987532110 0 011125668899999999999875543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=141.42 Aligned_cols=135 Identities=17% Similarity=0.078 Sum_probs=104.7
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHH
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
..++......++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.+.++|+.++++++++||+|
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 162 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEE
Confidence 333333344578899999999999999998876558999999865 3577889999999888999999
Q ss_pred HH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC----cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 167 FS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD----KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 167 ~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++ .+++|+ .++.++++++.++|||||++++.++...... .......++.+++.+++++.||..+....
T Consensus 163 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 88 599999 5688999999999999999999886322110 11112345889999999999987666543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-18 Score=137.77 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=101.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc--
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL-- 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~-- 175 (257)
+.++.+|||+|||+|.++..+++.+. +|+|+|+|+. .+.+..+|+.+++ ++++||+|++ ++++|+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 45788999999999999999998754 9999999976 5678899999988 7889999998 5999998
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCc---CCCCCcCChhHHHHhcccCC-cEEEEEe
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADK---YSANDLFSVKPLVKLFKRSE-MVRVRKV 233 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---y~~~~~~~~~~~~~~f~~~~-~~~~~~~ 233 (257)
++..+++++.++|||||++++.++....... .....+++.+++.+++++.| |..+...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 7889999999999999999999865432111 11124579999999999999 8665544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-17 Score=131.56 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=105.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERT 187 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~ 187 (257)
.++.+|||||||+|.++..++ .+++|+|+++..+.+..+|+.++++++++||+|++. +++ ..++.++++++.++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~ 140 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEEANRV 140 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-ccCHHHHHHHHHHh
Confidence 567899999999999988773 599999999999999999999999999999999885 775 48999999999999
Q ss_pred ccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEccccc
Q 025148 188 LKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAKS 250 (257)
Q Consensus 188 LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~~ 250 (257)
|||||.+++..+... +.+..++.+++.+.||..+......+....++++|.+..
T Consensus 141 L~~gG~l~i~~~~~~---------~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~~ 194 (215)
T 2zfu_A 141 LKPGGLLKVAEVSSR---------FEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPP 194 (215)
T ss_dssp EEEEEEEEEEECGGG---------CSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECSSC
T ss_pred CCCCeEEEEEEcCCC---------CCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecCcc
Confidence 999999999875322 127889999999999987765544333456777776543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=136.91 Aligned_cols=128 Identities=21% Similarity=0.212 Sum_probs=103.9
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...+.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.++++++++||+|++.
T Consensus 16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEEC
Confidence 44457889999999999999999998764 9999999964 4678899999999999999999995
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++|+.++.++++++.++|||||++++..+..... ........++..++.+++.+.||..+...
T Consensus 95 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 172 (239)
T 1xxl_A 95 YAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172 (239)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEE
Confidence 99999999999999999999999999976432110 00111245688999999999998755443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-18 Score=142.48 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=103.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||||||+|.++..+++.+.++|+|+|+|+. ++.+..+|+.++++++++||+|+| ++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 4678999999999999999999987779999999965 378899999999998999999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------cCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------ADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+ ++.++++++.++|||||++++..+.... .|......+.+..++.+++.+.||..+...
T Consensus 124 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 124 IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999 8999999999999999999998753111 110011245578899999999999876654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-17 Score=140.89 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=102.4
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
.++......++.+|||+|||+|.++..+++. +..+++|+|+|+. ++.+..+|+.+++ ++++||+|++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYAN 102 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEe
Confidence 4443444567889999999999999999886 4569999999965 5788999999988 7889999999
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------------cCc--C-----CCCCcCChhHHHHhcccCCc
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------------ADK--Y-----SANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~~~--y-----~~~~~~~~~~~~~~f~~~~~ 227 (257)
.+++|+.++..+++++.++|||||.+++.++.... .|. . ....+++..++.+++.+.||
T Consensus 103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 182 (259)
T 2p35_A 103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSS 182 (259)
T ss_dssp SCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEE
T ss_pred CchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCC
Confidence 59999999999999999999999999999864311 011 1 12256789999999999998
Q ss_pred E
Q 025148 228 V 228 (257)
Q Consensus 228 ~ 228 (257)
.
T Consensus 183 ~ 183 (259)
T 2p35_A 183 R 183 (259)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=136.88 Aligned_cols=125 Identities=21% Similarity=0.363 Sum_probs=103.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCC--CCCCCCchhHHHH-HHhhccccH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHR--QPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~--~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+++. ...+..+|+.+ .++++++||+|++ ++++|+.++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 577899999999999999999885 69999999975 34678889876 6777889999988 599999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC----------cCcCC--------CCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR----------ADKYS--------ANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~y~--------~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++++++.++|||||.+++.+|+... .|.+. ...+++..++.+++.+.||..+....
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 99999999999999999999876321 22221 11557899999999999997665543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=133.99 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
..++.+|||+|||+|.++..+ +..+++|+|+|+. ++.+..+|+.++++++++||+|++ ++++|+.+
T Consensus 34 ~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 34 LPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred cCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 347889999999999999887 3338999999965 578889999999999999999988 59999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcC-------------cCCCCCcCChhHHHHhcc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRAD-------------KYSANDLFSVKPLVKLFK 223 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~y~~~~~~~~~~~~~~f~ 223 (257)
+.++++++.++|||||.+++.+++....| .+....+++.+++.++++
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc
Confidence 99999999999999999999987654311 123346789999999998
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=143.09 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=105.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCC-C
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPF-D 159 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~-~ 159 (257)
..+...+....+.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.+.++|+.+.++ +
T Consensus 51 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 130 (298)
T 1ri5_A 51 NFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL 130 (298)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC
Confidence 344444444456788999999999999999988877669999999965 25788999998888 6
Q ss_pred CCchhHHHH-HHhhc----cccHHHHHHHHHHhccCCcEEEEEeccCCCc-----------------------------C
Q 025148 160 DETFDFEFS-NVFDH----ALYPDKFVMEIERTLKPGGVCVLHVALSKRA-----------------------------D 205 (257)
Q Consensus 160 ~~~fD~V~~-~~l~h----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----------------------------~ 205 (257)
+++||+|++ .+++| ..++.++++++.++|||||.+++.+++.... .
T Consensus 131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 210 (298)
T 1ri5_A 131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVR 210 (298)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCC
T ss_pred CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccc
Confidence 889999988 47765 5678899999999999999999998753210 0
Q ss_pred cCC----------CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 206 KYS----------ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 206 ~y~----------~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.|. ...+++..++.+++++.||..+...
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~ 248 (298)
T 1ri5_A 211 EYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 248 (298)
T ss_dssp EEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred eEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEec
Confidence 010 0145688999999999999766654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=139.30 Aligned_cols=122 Identities=20% Similarity=0.110 Sum_probs=96.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
..++.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.+.++|+.++++++++||+|++ ++++|+.++
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 110 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHL 110 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSH
T ss_pred CCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCH
Confidence 4678899999999999999999854 59999999964 467889999999999999999999 599999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC---cCc--CCC-------CCcCChhHHHHhcccCCcEEEEE
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR---ADK--YSA-------NDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~---~~~--y~~-------~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
.+++++++++|| ||++++..+.... .|. +.. ..+.+...+. ++++.||..+..
T Consensus 111 ~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~ 175 (261)
T 3ege_A 111 EKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEA 175 (261)
T ss_dssp HHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEE
T ss_pred HHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeE
Confidence 999999999999 9988887654322 111 100 1344566677 888888865443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-18 Score=151.18 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEE-----EecCCCCCCCCCch
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVI-----EGDFHRQPFDDETF 163 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~-----~~d~~~~~~~~~~f 163 (257)
.....++....+.++.+|||||||+|.++..+++.+. +|+|+|+|+. ..... ..+...+++++++|
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~f 172 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPA 172 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCE
Confidence 3344444444556788999999999999999999765 9999999965 12222 22333445667899
Q ss_pred hHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-------cCcC-CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 164 DFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-------ADKY-SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 164 D~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~y-~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|+|++ ++++|+.++..++++++++|||||++++.+|.... ...+ ....+++..++.+++++.||..+....
T Consensus 173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 99998 69999999999999999999999999999875211 1112 223567999999999999997665543
Q ss_pred --CCCCceEEEEEccc
Q 025148 235 --GFGLDTEVVFRKNA 248 (257)
Q Consensus 235 --gf~~~~~vv~~k~~ 248 (257)
.++-+..++.++.+
T Consensus 253 ~~~~~g~l~~~~~~~~ 268 (416)
T 4e2x_A 253 LPVHGGEVRYTLARQG 268 (416)
T ss_dssp ECGGGSEEEEEEEETT
T ss_pred ccCCCCEEEEEEEeCC
Confidence 22323344445443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=140.70 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=102.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||+|||+|.++..+++....+|+|+|+|+. .+.+.++|+.++++++++||+|++ ++
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 4677899999999999999999975559999999975 277899999999999999999999 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------cCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------ADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+ ++.++++++.++|||||++++..+.... .|.-....+.+..++.+++++.||..+...
T Consensus 124 l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 124 IYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp SCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred Hhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 9999 8999999999999999999998753111 111011235678899999999999877654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=140.93 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=107.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHH--HcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALK--RVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
..+.++.+|||||||+|..+..++ ..+..+|+|+|+|+. .+.++++|+.+++++ ++||+|+
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLT 192 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEE
Confidence 345788999999999999999984 345679999999965 267899999999887 8999999
Q ss_pred H-HHhhccccHHH---HHHHHHHhccCCcEEEEEeccCCC------cCc---CC------------------CCCcCChh
Q 025148 168 S-NVFDHALYPDK---FVMEIERTLKPGGVCVLHVALSKR------ADK---YS------------------ANDLFSVK 216 (257)
Q Consensus 168 ~-~~l~h~~~~~~---~l~~~~r~LkpgG~l~i~~~~~~~------~~~---y~------------------~~~~~~~~ 216 (257)
+ .+++|+.++.. +++++.++|||||++++....... .|. +. ...+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 9 58999988876 699999999999999998743211 111 00 11447899
Q ss_pred HHHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 217 PLVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 217 ~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
++.+++++.||..+.... .......++.+|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999998877764 222234455554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=140.26 Aligned_cols=129 Identities=20% Similarity=0.376 Sum_probs=103.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.+..+|+.++++++++||+|++
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 32 DTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp TCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred cccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 334578899999999999999999986 3579999999964 467889999999999999999988
Q ss_pred -HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------------CcCCCCCcCChhHHHHhcccCCcE
Q 025148 169 -NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------------DKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 169 -~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------------~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
++++|+.++..+++++.++|||||++++..+..... ........++..++..++++.||.
T Consensus 112 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 112 CFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCE
T ss_pred echhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCC
Confidence 599999999999999999999999999987543210 001111334668899999999997
Q ss_pred EEEEe
Q 025148 229 RVRKV 233 (257)
Q Consensus 229 ~~~~~ 233 (257)
.+...
T Consensus 192 ~v~~~ 196 (276)
T 3mgg_A 192 KIRVE 196 (276)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 66544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=133.19 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=101.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
..++.+|||+|||+|.++..+++. +..+++|+|+|+. ++.++++|+.+.+++ ++||+|++ .+++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 356789999999999999999986 3569999999965 467899999999887 88999988 5999
Q ss_pred ccccHH--HHHHHHHHhccCCcEEEEEeccCCC-----------------------------cCcCCCCCcCChhHHHHh
Q 025148 173 HALYPD--KFVMEIERTLKPGGVCVLHVALSKR-----------------------------ADKYSANDLFSVKPLVKL 221 (257)
Q Consensus 173 h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~-----------------------------~~~y~~~~~~~~~~~~~~ 221 (257)
|+.++. ++++++.++|||||.+++..+.... .........++.+++.++
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 998776 4899999999999999998743211 011122355688999999
Q ss_pred cccCCcEEEEEec
Q 025148 222 FKRSEMVRVRKVD 234 (257)
Q Consensus 222 f~~~~~~~~~~~~ 234 (257)
++++||..+....
T Consensus 201 l~~aGF~~v~~~~ 213 (234)
T 3dtn_A 201 LKEAGFRDVSCIY 213 (234)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHcCCCceeeee
Confidence 9999998887664
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=134.81 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
.++.+|||||||+|.++..+++.+..+++|+|+|+. ++.+..+|+.++++++++||+|++ .+++|+.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 467899999999999999999876559999999965 367889999998888899999988 5999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCC------cCc-------------CC--------------CCCcCChhHHHHhc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKR------ADK-------------YS--------------ANDLFSVKPLVKLF 222 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~-------------y~--------------~~~~~~~~~~~~~f 222 (257)
++.++++++.++|||||.+++.++.... .|. |. ....++..++.+++
T Consensus 122 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l 201 (243)
T 3bkw_A 122 DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNAL 201 (243)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHH
Confidence 9999999999999999999998753210 011 10 00224788999999
Q ss_pred ccCCcEEEEEec
Q 025148 223 KRSEMVRVRKVD 234 (257)
Q Consensus 223 ~~~~~~~~~~~~ 234 (257)
.++||..+....
T Consensus 202 ~~aGF~~~~~~~ 213 (243)
T 3bkw_A 202 IRSGFAIEHVEE 213 (243)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHcCCEeeeecc
Confidence 999998766554
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-17 Score=133.51 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=101.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-H-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-N-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l~ 172 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. .+.+.++|+.+++++ ++||+|++ . +++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 367899999999999999999876 48999999965 477889999988877 78999988 5 999
Q ss_pred cc---ccHHHHHHHHHHhccCCcEEEEEeccCCC-------------------cCc---------------------C--
Q 025148 173 HA---LYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------ADK---------------------Y-- 207 (257)
Q Consensus 173 h~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------~~~---------------------y-- 207 (257)
|+ .++.++++++.++|||||.+++.++.... .|. |
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 99 67888999999999999999998754211 000 0
Q ss_pred ----CCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 208 ----SANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 208 ----~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
....+|+.+++.++++++||..+.....|
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~ 226 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCY 226 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESS
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEccc
Confidence 00145699999999999999887776543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-17 Score=140.18 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~ 178 (257)
..+++|||||||+|..+..|++.+. +|+|+|+|+. ++.+.+++++++++++++||+|+|. ++||+ ++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHh-hHH
Confidence 4567999999999999999998764 9999999965 5688999999999999999999884 88665 688
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++++++|+|||||+|++...
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEEC
Confidence 999999999999999988764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=128.55 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=98.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.+..+|+.++ +++++||+|++ ++++|+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 5677899999999999999999885 49999999964 577899999888 78899999988 5999999
Q ss_pred cH--HHHHHHHHHhccCCcEEEEEeccCCCcC---cC------------C-------CCCcCChhHHHHhcccCCcEEEE
Q 025148 176 YP--DKFVMEIERTLKPGGVCVLHVALSKRAD---KY------------S-------ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 176 ~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~y------------~-------~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++ ..+++++.++|||||.+++..+...... .+ . ...+++..++.+++++.||....
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 201 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSV 201 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEe
Confidence 86 7899999999999999999875432100 00 0 01356899999999999997433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=136.66 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=101.5
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~ 162 (257)
...++....+.++.+|||||||+|.++..+++....+|+|+|+|+. .+.+..+|+.+++ ++
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~ 129 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EP 129 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CC
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CC
Confidence 3333334445778899999999999999998542349999999955 3567888887765 78
Q ss_pred hhHHHH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC-----------------------cCCCCCcCChh
Q 025148 163 FDFEFS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD-----------------------KYSANDLFSVK 216 (257)
Q Consensus 163 fD~V~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----------------------~y~~~~~~~~~ 216 (257)
||+|++ ++++|+ .++..+++++.++|||||.+++.++...... .+....+++..
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 999988 599999 6889999999999999999999876432200 11223456899
Q ss_pred HHHHhcccCCcEEEEEe
Q 025148 217 PLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 217 ~~~~~f~~~~~~~~~~~ 233 (257)
++.+++++.||..+...
T Consensus 210 ~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQ 226 (287)
T ss_dssp HHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHhCCcEEEEEE
Confidence 99999999999766654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=130.59 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+. ++.+..+|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 467899999999999999999864 369999999965 36788999988888888999998
Q ss_pred H-HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCcC-----------CCCCcCChhHHH----HhcccCCcEE
Q 025148 168 S-NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADKY-----------SANDLFSVKPLV----KLFKRSEMVR 229 (257)
Q Consensus 168 ~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y-----------~~~~~~~~~~~~----~~f~~~~~~~ 229 (257)
+ ++++|+.++ .++++++.++|||||++ +.+++......| .....++..++. +++.+.|+..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVI-VSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEE-EEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEE-EEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 8 599999976 68999999999999954 445443221111 111345888888 7788889855
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 187 ~~~ 189 (219)
T 3jwg_A 187 RFL 189 (219)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=132.12 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=96.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.+.++|+.+.+ ++++||+|++ ++++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 34599999999999999998754 58999999965 2678899999877 4568999998 5999
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|+. ++.++++++.++|||||.+++........ .......++..++..++.+.||..+...
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDH-VGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-CSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-CCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998 88999999999999999999876533211 1111234689999999999999876654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=130.42 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=97.3
Q ss_pred CCCCCeEEEECCCCCHHH-HHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEV-EALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
..++.+|||+|||+|..+ ..+++.+ .+|+|+|+|+. ++.+.++|+.++++++++||+|++ +++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 356789999999999984 4454444 59999999964 478899999999998899999988 589
Q ss_pred hcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC----------cCC--------CCCcCChhHHHHhcccCCcEEEE
Q 025148 172 DHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD----------KYS--------ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 172 ~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----------~y~--------~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+|+ .++.++++++.++|||||.+++.++...... .|. ...+++.+++.++|.+.++....
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 999 6888999999999999999999875432110 010 01467888999999999986554
Q ss_pred E
Q 025148 232 K 232 (257)
Q Consensus 232 ~ 232 (257)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-17 Score=133.73 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=101.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
++++.+|||+|||+|.++..+++.+. +|+|+|+++. .+.+..+|+.++++++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46788999999999999999999854 9999999964 14788999999999899999998
Q ss_pred H-HHhhccccHH---HHHHHHHHhccCCcEEEEEeccCCCc------------------CcC-----------CCCCcCC
Q 025148 168 S-NVFDHALYPD---KFVMEIERTLKPGGVCVLHVALSKRA------------------DKY-----------SANDLFS 214 (257)
Q Consensus 168 ~-~~l~h~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~------------------~~y-----------~~~~~~~ 214 (257)
+ .+++|+.++. ++++++.++|||||.+++..+..... ..+ .....++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 8 5999999988 89999999999999999987532210 000 0014578
Q ss_pred hhHHHHhcccCCcEEEEEe
Q 025148 215 VKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 215 ~~~~~~~f~~~~~~~~~~~ 233 (257)
.+++.++++++||..+...
T Consensus 187 ~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEE
Confidence 9999999999999876654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=136.54 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
.+..++....+.++.+|||||||+|.++..+++. + .+|+|+|+|+. ++.+..+|+.++ +
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 3444444555678899999999999999999987 6 69999999965 356888888776 6
Q ss_pred CchhHHHH-HHhhccccH---------HHHHHHHHHhccCCcEEEEEeccCCCcC-----------------------cC
Q 025148 161 ETFDFEFS-NVFDHALYP---------DKFVMEIERTLKPGGVCVLHVALSKRAD-----------------------KY 207 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~~~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----------------------~y 207 (257)
++||+|++ .+++|+.++ ..+++++.++|||||.+++..+...... .+
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 88999998 599999766 7899999999999999999875432100 11
Q ss_pred CCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 208 SANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
....+.+..++.+++++.||..+...
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~ 241 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYH 241 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEE
Confidence 22255688899999999998765544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=130.22 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=102.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH--HHhhccc-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS--NVFDHAL- 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~--~~l~h~~- 175 (257)
.++.+|||+|||+|.++..+++.+. +++|+|+|+. ++.+..+|+.++++ +++||+|+| ++++|+.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999998754 8999999975 47889999998887 678999984 4999994
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEeccCCCcC--c--------------------------------C---C--------
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHVALSKRAD--K--------------------------------Y---S-------- 208 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~--------------------------------y---~-------- 208 (257)
+..++++++.++|||||.+++..+...... . | .
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 557899999999999999999864322100 0 0 0
Q ss_pred ----CCCcCChhHHHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 209 ----ANDLFSVKPLVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 209 ----~~~~~~~~~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
...+|+.+++.++++++||. +.... +++....++.+|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~-v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLR-VEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEE-EEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCE-EEEeEcCCCCceEEEEec
Confidence 00457899999999999994 55554 444334555554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=129.01 Aligned_cols=119 Identities=24% Similarity=0.396 Sum_probs=100.0
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
+.+|||+|||+|.++..+++. +|+|+|+. .+.+..+|+.++++++++||+|++ ++++|+.++.+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 122 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERAL 122 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHH
Confidence 789999999999999988663 99999976 578899999999988899999988 5999999999999
Q ss_pred HHHHHhccCCcEEEEEeccCCCc------------CcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 182 MEIERTLKPGGVCVLHVALSKRA------------DKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i~~~~~~~~------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+++.++|||||.+++.++..... ..+....+++..++.+++.+.||..+....
T Consensus 123 ~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 123 KEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp HHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999998654321 112233567999999999999998766554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-17 Score=143.75 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=100.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-----------------------CCcEEEecCCCC------
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-----------------------PPLVIEGDFHRQ------ 156 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-----------------------~~~~~~~d~~~~------ 156 (257)
+.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 357889999999999999999885 4569999999853 467889999887
Q ss_pred CCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-----------cCcCCCCCcCChhHHHHhccc
Q 025148 157 PFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-----------ADKYSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 157 ~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~y~~~~~~~~~~~~~~f~~ 224 (257)
++++++||+|+++ +++|+.++.+++++++|+|||||++++..+.... .+.......++..++.+++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 8899999999995 9999999999999999999999999998653321 011112244678999999999
Q ss_pred CCcEEEE
Q 025148 225 SEMVRVR 231 (257)
Q Consensus 225 ~~~~~~~ 231 (257)
.||..+.
T Consensus 241 aGF~~v~ 247 (383)
T 4fsd_A 241 AGFRDVR 247 (383)
T ss_dssp TTCCCEE
T ss_pred CCCceEE
Confidence 9986553
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-17 Score=137.18 Aligned_cols=125 Identities=13% Similarity=0.148 Sum_probs=100.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.+..+|+.++++++++||+|++ .+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999988876669999999965 256889999988888889999988 59999
Q ss_pred cccHH--HHHHHHHHhccCCcEEEEEeccCCCcCcC---CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 174 ALYPD--KFVMEIERTLKPGGVCVLHVALSKRADKY---SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 174 ~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~y---~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+.++. ++++++.++|||||++++..+.......+ ......+..++.+++.+.||..+....
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 98865 89999999999999999987643321111 111234788999999999997666553
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=126.08 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. ++.+..+|+.+.++ +++||+|++ ++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 467899999999999999999875 49999999964 46788999998887 789999988 5999
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC--CCCcCChhHHHHhccc
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS--ANDLFSVKPLVKLFKR 224 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~--~~~~~~~~~~~~~f~~ 224 (257)
|+. ++.++++++.++|||||.+++..+.....+... ....++.+++.++|.+
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG 164 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC
Confidence 987 788999999999999999888765433222211 2245689999999987
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=124.54 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=100.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~ 175 (257)
+.++.+|||+|||+|.++..+++.+ .+++|+|+++. ++.+..+|+.+.++++++||+|+++ +++|+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 5678899999999999999999875 49999999975 5788999999988888899999884 788874
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
+..++++++.++|||||.+++.++... .++..++.+++.+.|+........+.
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---------~~~~~~~~~~l~~~Gf~~~~~~~~~~ 177 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGR---------GWVFGDFLEVAERVGLELENAFESWD 177 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTS---------SCCHHHHHHHHHHHTEEEEEEESSTT
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------CcCHHHHHHHHHHcCCEEeeeecccc
Confidence 557899999999999999999886432 14788999999999998777655433
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=133.93 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=90.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------------------CCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------------------PPLVIEGDFHRQ 156 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------------------~~~~~~~d~~~~ 156 (257)
.++.+|||+|||+|..+..|++.|. +|+|+|+|+. ++.+.++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5678999999999999999999876 9999999954 135788999998
Q ss_pred CCCC-CchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 157 PFDD-ETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 157 ~~~~-~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
++++ ++||+|++. +++|+. +..++++++.++|||||++++.+........-.....++.+++.++|.+ +|..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEE
Confidence 8765 899999984 888886 3457899999999999999765432211111111233688999999987 3543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=130.20 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+.++|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 46789999999999999999986 4469999999965 36788899888787778999998
Q ss_pred H-HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCC----------cCc-CCCCCcCChhHHH----HhcccCCcEE
Q 025148 168 S-NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKR----------ADK-YSANDLFSVKPLV----KLFKRSEMVR 229 (257)
Q Consensus 168 ~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~-y~~~~~~~~~~~~----~~f~~~~~~~ 229 (257)
+ ++++|+.++ .++++++.++|||||++++.. +... ... ......++..++. +++.+.|+..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP-NIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV 186 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE-BHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc-CcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence 8 599999876 789999999999999666543 2211 000 1111346888888 8888999865
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 187 ~~~ 189 (217)
T 3jwh_A 187 QFQ 189 (217)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=128.95 Aligned_cols=93 Identities=23% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+.+ ++++||+|++ ++++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 35678999999999999999998764 9999999965 4678999999988 6789999998 59999
Q ss_pred cccH---HHHHHHHHHhccCCcEEEEEeccCC
Q 025148 174 ALYP---DKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 174 ~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
+.++ .++++++.++|||||.+++.++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 9988 4679999999999999999886543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-17 Score=138.15 Aligned_cols=126 Identities=14% Similarity=0.014 Sum_probs=93.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC-----------------------------------------
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP----------------------------------------- 146 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~----------------------------------------- 146 (257)
..++.+|||||||+|.++..++..+..+|+|+|+|+.++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 356789999999999888777766655899999996411
Q ss_pred ----cEEEecCCCC-CC---CCCchhHHHHH-Hhhcc----ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcC----CC
Q 025148 147 ----LVIEGDFHRQ-PF---DDETFDFEFSN-VFDHA----LYPDKFVMEIERTLKPGGVCVLHVALSKRADKY----SA 209 (257)
Q Consensus 147 ----~~~~~d~~~~-~~---~~~~fD~V~~~-~l~h~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y----~~ 209 (257)
.+.++|+.+. |+ .+++||+|++. ++||+ .+..+++++++|+|||||.|++........... ..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 1678888773 43 35789999995 88886 466789999999999999999987533211000 01
Q ss_pred CCcCChhHHHHhcccCCcEEEEEe
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
...++.+++.+.+.+.||..+...
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEe
Confidence 134588999999999998765543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=135.16 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=98.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------------------------------
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------------------------------- 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------------------------------- 144 (257)
++.+|||||||+|.++..+++. +..+|+|+|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999999986 5669999999853
Q ss_pred -----------------------------CCcEEEecCCCCC-----CCCCchhHHHH-HHhhccc------cHHHHHHH
Q 025148 145 -----------------------------PPLVIEGDFHRQP-----FDDETFDFEFS-NVFDHAL------YPDKFVME 183 (257)
Q Consensus 145 -----------------------------~~~~~~~d~~~~~-----~~~~~fD~V~~-~~l~h~~------~~~~~l~~ 183 (257)
++.+.++|+...+ +.+++||+|+| ++++|+. ++.+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 3566777776544 56789999999 5887764 77889999
Q ss_pred HHHhccCCcEEEEEeccCCCc-----------CcCCCCCcCChhHHHHhccc--CCcEEEEEec-------CCCCceEEE
Q 025148 184 IERTLKPGGVCVLHVALSKRA-----------DKYSANDLFSVKPLVKLFKR--SEMVRVRKVD-------GFGLDTEVV 243 (257)
Q Consensus 184 ~~r~LkpgG~l~i~~~~~~~~-----------~~y~~~~~~~~~~~~~~f~~--~~~~~~~~~~-------gf~~~~~vv 243 (257)
++++|||||+|++....-+.. ..|.. -.+.++++..++.+ .||..+..+. ||. ....+
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~-~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~-r~i~~ 283 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYR-IQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQ-RPVYL 283 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHH-CCCCGGGHHHHHTSTTTCCCEEEEC------------CCCEE
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhc-EEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCcc-ceEEE
Confidence 999999999999975421100 00100 12357889999998 8997665543 444 24566
Q ss_pred EEccc
Q 025148 244 FRKNA 248 (257)
Q Consensus 244 ~~k~~ 248 (257)
++|+.
T Consensus 284 ~~k~~ 288 (292)
T 3g07_A 284 FHKAR 288 (292)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 67653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-16 Score=127.25 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCC---CCCC-CchhHHHHH-Hhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQ---PFDD-ETFDFEFSN-VFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~---~~~~-~~fD~V~~~-~l~h~ 174 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ...+..+++.++ ++.. ++||+|+++ +++ .
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~ 128 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H 128 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence 4568999999999999999998854 9999999975 456777777766 5444 459999985 777 7
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCCcC--------------cC------CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKRAD--------------KY------SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------------~y------~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++..++++++++|||||++++.++...... .+ ....+++.+++.++++++||..+....
T Consensus 129 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 129 QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 8999999999999999999999986432210 00 011345899999999999998777554
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-16 Score=136.25 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------CCcEEEecCCCCC---CCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------PPLVIEGDFHRQP---FDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~---~~~~~fD~V 166 (257)
.++.+|||||||+|.++..+++.+. +|+|+|+|+. .+.+..+|+.+++ +++++||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 4678999999999999999999865 9999999965 3456788888877 788999999
Q ss_pred HH--HHhhcccc-------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FS--NVFDHALY-------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~--~~l~h~~~-------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+| ++++|+.+ +.+++++++++|||||++++.+++
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 87 59999999 999999999999999999999864
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=127.39 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=100.7
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------------CCcEEEec---C
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------------PPLVIEGD---F 153 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------------~~~~~~~d---~ 153 (257)
.++....+.++.+|||||||+|.++..+++. + ..+|+|+|+|+. ++.+..+| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3333444678899999999999999999986 3 369999999973 35677777 4
Q ss_pred CCCCCCCCchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-----------------------CcCCC
Q 025148 154 HRQPFDDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-----------------------DKYSA 209 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----------------------~~y~~ 209 (257)
..+++++++||+|++ ++++|+.++..+++.+.++++|||.+++........ .....
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANI 193 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccc
Confidence 455778899999988 599999999987777777777899999986432110 01111
Q ss_pred CCcCChhHHHHhcccCCcEEEEEec
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
..+++..++.++++++||..+....
T Consensus 194 ~~~~s~~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 194 RTLITPDTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEECCC
T ss_pred cccCCHHHHHHHHHHCCCeeEEEEE
Confidence 2467899999999999998766543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-16 Score=133.98 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=100.4
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~ 161 (257)
...++....+.++.+|||||||+|.++..+++. + .+|+|+|+|+. .+.+..+|+.+++ +
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~ 154 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---E 154 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---C
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---C
Confidence 333333444577889999999999999999986 5 49999999965 2577888887764 6
Q ss_pred chhHHHH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC-----------------------cCCCCCcCCh
Q 025148 162 TFDFEFS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD-----------------------KYSANDLFSV 215 (257)
Q Consensus 162 ~fD~V~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----------------------~y~~~~~~~~ 215 (257)
+||+|++ ++++|+ .++.++++++.++|||||.+++.++...... .+....+.+.
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 8999988 599999 6889999999999999999999886543211 1122355688
Q ss_pred hHHHHhcccCCcEEEE
Q 025148 216 KPLVKLFKRSEMVRVR 231 (257)
Q Consensus 216 ~~~~~~f~~~~~~~~~ 231 (257)
.++.+++++.||..+.
T Consensus 235 ~~~~~~l~~aGf~~~~ 250 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPE 250 (318)
T ss_dssp HHHHHHHHHTTCBCCC
T ss_pred HHHHHHHHhCCCEEEE
Confidence 9999999999886544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-16 Score=129.68 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=97.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.+..+|+.++++++++||+|++ .++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 35678899999999999999999875 59999999864 467889999999998999999988 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCC--C-------------cCcCC---CCCcCChhHHHHhcccCCcEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSK--R-------------ADKYS---ANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--~-------------~~~y~---~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
+|+.++.++++++.++|||||.+++..+... . ...+. ....++..++.+++.+.||...
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 191 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPR 191 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999998743221 0 00011 1124467778888888887633
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-16 Score=135.35 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=80.5
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHH--cCCCcEEEecCCCC-----------------CCcEEEecCCCCCCCC-----
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKR--VGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDD----- 160 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~----- 160 (257)
.....++.+|||||||+|..+..+++ .+..+|+|+|+|+. ++.++++|+.++++++
T Consensus 31 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 31 EYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp HHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred HHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence 33346789999999999999999996 35679999999863 5678899999998887
Q ss_pred -CchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 161 -ETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 161 -~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++||+|++ .+++|+ ++.++++++.++|||||.+++.
T Consensus 111 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 89999998 599999 9999999999999999999984
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-16 Score=136.90 Aligned_cols=124 Identities=18% Similarity=0.065 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC-------------------------------------------
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP------------------------------------------- 146 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~------------------------------------------- 146 (257)
++.+|||||||+|.....++..+..+|+|+|+|+.++
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 6789999999999965544444445999999997622
Q ss_pred --cEEEecCCC-CCC-----CCCchhHHHHH-Hhhc----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----C
Q 025148 147 --LVIEGDFHR-QPF-----DDETFDFEFSN-VFDH----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYS----A 209 (257)
Q Consensus 147 --~~~~~d~~~-~~~-----~~~~fD~V~~~-~l~h----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~----~ 209 (257)
.++.+|+.+ +|+ ++++||+|+|+ +++| +.++.+++++++|+|||||++++............ .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 133447776 553 45679999995 9999 67889999999999999999999753222110000 1
Q ss_pred CCcCChhHHHHhcccCCcEEEEEe
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
...++.+++.+++.+.||..+...
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEEEee
Confidence 245689999999999999765543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=126.90 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=100.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-H-Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-N-VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l 171 (257)
+.++.+|||+|||+|.++..+++. .+++|+|+|+. ++.+..+|+.+.+++ ++||+|++ . ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCch
Confidence 456789999999999999999887 69999999964 468889999888876 78999987 3 89
Q ss_pred hcc---ccHHHHHHHHHHhccCCcEEEEEeccCCC-------------------cCc-----------------------
Q 025148 172 DHA---LYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------ADK----------------------- 206 (257)
Q Consensus 172 ~h~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------~~~----------------------- 206 (257)
+|+ .++.++++++.++|||||.+++.++.... .|.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDG 187 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTS
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCC
Confidence 998 46678899999999999999997653210 000
Q ss_pred -CC------CCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 207 -YS------ANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 207 -y~------~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
|. ....++.+++.++++++||..+.....|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 225 (243)
T 3d2l_A 188 RYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFK 225 (243)
T ss_dssp CEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTS
T ss_pred ceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcc
Confidence 00 01357999999999999998887766554
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-16 Score=131.68 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=99.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||||||+|.++..+++. + ..+|+|+|+|+. ++.+.++|+.+++++ ++||+|++ .+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 98 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF 98 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh
Confidence 467889999999999999999886 3 369999999965 467889999998884 68999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc-----CCC-cC---------------------cCCCCCcCChhHHHHhcc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL-----SKR-AD---------------------KYSANDLFSVKPLVKLFK 223 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~-----~~~-~~---------------------~y~~~~~~~~~~~~~~f~ 223 (257)
++|+.++.+++++++++|||||++++..+. ... .+ ......+....++.++++
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 178 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLS 178 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHH
Confidence 999999999999999999999999998875 110 00 000113445677889999
Q ss_pred cCCcEEEEEe
Q 025148 224 RSEMVRVRKV 233 (257)
Q Consensus 224 ~~~~~~~~~~ 233 (257)
++||..+...
T Consensus 179 ~aGF~~v~~~ 188 (284)
T 3gu3_A 179 ELGVKNIECR 188 (284)
T ss_dssp HTTCEEEEEE
T ss_pred HcCCCeEEEE
Confidence 9999877664
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=122.95 Aligned_cols=92 Identities=26% Similarity=0.375 Sum_probs=80.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-H--
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-V-- 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~-- 170 (257)
+.++.+|||+|||+|.++..+++.+. +++|+|+|+. ++.+..+|+.++++++++||+|+++ +
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 35588999999999999999998765 9999999964 5788999999988888899999884 6
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++|..++.++++++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 667778899999999999999999998764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=129.31 Aligned_cols=91 Identities=24% Similarity=0.258 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcc-ccH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHA-LYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~-~~~ 177 (257)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+. ...+..+|+.++++++++||+|++ ++++|+ .++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 377899999999999999999875 49999999975 123889999999998999999988 456665 789
Q ss_pred HHHHHHHHHhccCCcEEEEEecc
Q 025148 178 DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.++++++.++|||||.+++.+++
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999998865
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=123.63 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
.++ +|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.+.++++++||+|++. +.|+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~-~~~~ 105 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI-FCHL 105 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE-CCCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE-hhcC
Confidence 456 999999999999999998764 9999999965 4567888999888888999999884 3344
Q ss_pred --ccHHHHHHHHHHhccCCcEEEEEeccCCCcC-----cCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 175 --LYPDKFVMEIERTLKPGGVCVLHVALSKRAD-----KYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 175 --~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
.++.++++++.++|||||.+++.++...... ......+++.+++.+++. ||..+.
T Consensus 106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 106 PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 4678899999999999999999987543321 111125679999999999 664433
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=130.68 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHA 174 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~ 174 (257)
++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.+.++ +++||+|+++ +++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 678999999999999999999865 9999999975 46788999998877 7889999984 99999
Q ss_pred cc--HHHHHHHHHHhccCCcEEEEEeccCCCcCcC--CCCCcCChhHHHHhcccCCcEEE
Q 025148 175 LY--PDKFVMEIERTLKPGGVCVLHVALSKRADKY--SANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 175 ~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y--~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
.+ ...+++++.++|||||.+++........... .....++..++.++|...++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEY 257 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcCCEEEEE
Confidence 64 4589999999999999988876533221111 12245688899999987444433
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=126.99 Aligned_cols=163 Identities=12% Similarity=0.035 Sum_probs=109.6
Q ss_pred ChHHHHHHHhhhcCCccccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecC
Q 025148 62 SYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDL 141 (257)
Q Consensus 62 ~y~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~ 141 (257)
.|.+...+............+|....|+.......... ..+.++.+|||+|||+|.++..+++.+. +|+|+|+
T Consensus 14 ~~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~ 86 (245)
T 3ggd_A 14 NVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFE------LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDV 86 (245)
T ss_dssp CHHHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHT------TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEES
T ss_pred chHHHHHHHHHhcccCCccceecchhHHHHHHHHHHHh------hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEEC
Confidence 35544444433333333344566655554443322221 1246788999999999999999999766 9999999
Q ss_pred CCC------------CCcEEEecCCCCCCCC-----CchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 142 VPY------------PPLVIEGDFHRQPFDD-----ETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 142 s~~------------~~~~~~~d~~~~~~~~-----~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
|+. ++.++++|+.+.+... ..||+|+++ +++|+. ++.++++++.++|||||++++.....
T Consensus 87 s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 87 SKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp CHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred CHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 965 4678888888765432 238899884 999998 78899999999999999988876432
Q ss_pred CCc---------------------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 202 KRA---------------------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 202 ~~~---------------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
... ..-.....++.+++.++| .||..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~ 217 (245)
T 3ggd_A 167 GCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQG 217 (245)
T ss_dssp THHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEE
T ss_pred cccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEecc
Confidence 110 000011235788999999 788766544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=129.58 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=96.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHHH--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEFS-- 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~-- 168 (257)
..+.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.++++|+.++++ +++||+|++
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 158 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISS 158 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECH
T ss_pred CCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECC
Confidence 345599999999999999999986 49999999964 36789999999887 678998774
Q ss_pred HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCc--------CcC-------------------------------
Q 025148 169 NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRA--------DKY------------------------------- 207 (257)
Q Consensus 169 ~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~y------------------------------- 207 (257)
.+++|+. +..++++++.++|||||.+++.+++.... +.+
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (299)
T 3g2m_A 159 GSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADET 238 (299)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC-
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCC
Confidence 4777766 35789999999999999999998653210 000
Q ss_pred --------CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 208 --------SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 208 --------~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
...++|+.+++.++++++||..+....
T Consensus 239 ~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~ 273 (299)
T 3g2m_A 239 TDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273 (299)
T ss_dssp -CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence 001357999999999999998766543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-16 Score=133.16 Aligned_cols=123 Identities=9% Similarity=0.007 Sum_probs=87.4
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHc-CCCcE--EEecCCCCC----------------CcE--EEecCCCCC------
Q 025148 109 SNESKALCIGARVGQEVEA----LKRV-GVSDS--VGIDLVPYP----------------PLV--IEGDFHRQP------ 157 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~----l~~~-~~~~v--~gvD~s~~~----------------~~~--~~~d~~~~~------ 157 (257)
.++.+|||||||+|.++.. ++.. +...| +|+|+|+.+ +.+ ..++..+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4567999999999976543 3332 34444 999999651 112 233333332
Q ss_pred CCCCchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc--------Cc-C---CCCCcCChhHHHHhccc
Q 025148 158 FDDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA--------DK-Y---SANDLFSVKPLVKLFKR 224 (257)
Q Consensus 158 ~~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~-y---~~~~~~~~~~~~~~f~~ 224 (257)
+++++||+|++ ++++|+.|+.+++++++|+|||||++++..+..+.. +. . ....+++..++.+++.+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 56889999988 599999999999999999999999999986543210 00 0 11245688999999999
Q ss_pred CCcEEEE
Q 025148 225 SEMVRVR 231 (257)
Q Consensus 225 ~~~~~~~ 231 (257)
.||....
T Consensus 211 aGf~~~~ 217 (292)
T 2aot_A 211 LGLKYEC 217 (292)
T ss_dssp HTCCEEE
T ss_pred CCCceEE
Confidence 9987554
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=119.70 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYP---- 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~---- 177 (257)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+. ++.+.++|+.+ ++++++||+|+++ .+++..+.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~ 98 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIG 98 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECCCCccCCcccccc
Confidence 456799999999999999999877 9999999975 67889999987 6677899999997 55544433
Q ss_pred -----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 178 -----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 178 -----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
.++++++.+.| |||.+++..+... ...++.+++++.||....... .++.+..++.+.
T Consensus 99 ~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~-----------~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 99 GGYLGREVIDRFVDAV-TVGMLYLLVIEAN-----------RPKEVLARLEERGYGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp CCGGGCHHHHHHHHHC-CSSEEEEEEEGGG-----------CHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred CCcchHHHHHHHHhhC-CCCEEEEEEecCC-----------CHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence 57889999999 9999999875332 578899999999987655443 344445555554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-16 Score=129.03 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=97.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------C------------------------------
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------P------------------------------ 145 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~------------------------------ 145 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+|+. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3567899999999999999888765458999999965 1
Q ss_pred --C-cEEEecCCCCC-CCC---CchhHHHH-HHhh----ccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----C
Q 025148 146 --P-LVIEGDFHRQP-FDD---ETFDFEFS-NVFD----HALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYS----A 209 (257)
Q Consensus 146 --~-~~~~~d~~~~~-~~~---~~fD~V~~-~~l~----h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~----~ 209 (257)
+ .+..+|+.+.+ +++ ++||+|++ .+++ |+.++.++++++.++|||||++++..+......... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 4 67888888764 355 89999988 5888 667889999999999999999999875432211000 1
Q ss_pred CCcCChhHHHHhcccCCcEEEEEe
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
...++.+++.+++.+.||..+...
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEE
Confidence 134578899999999999766554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=122.99 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=80.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
+.++.+|||+|||+|.++..+++.+..+|+|+|+|+. .+.+..+|+.++++++++||+|+++ +++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4678899999999999999999876559999999964 4788999999999888999999884 6655
Q ss_pred c---------------ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 174 A---------------LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 174 ~---------------~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+ .++.++++++.++|||||.+++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 4 36788999999999999999998863
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-15 Score=131.89 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------C---------CcEEEecC------CCC--CCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------P---------PLVIEGDF------HRQ--PFDD 160 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~---------~~~~~~d~------~~~--~~~~ 160 (257)
++.+|||||||+|..+..++..+..+|+|+|+|+. . +.+.+.|+ .++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 47899999999998776666655569999999976 1 12456666 222 3567
Q ss_pred CchhHHHH-HHhhcc---ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 161 ETFDFEFS-NVFDHA---LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~---~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++||+|+| .+++|+ .+..+++++++|+|||||++++.+++
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999988 477765 35578999999999999999999874
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=121.43 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=100.1
Q ss_pred HhhcCCCCCeEEEECCC-CCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 104 RKKLLSNESKALCIGAR-VGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
....++++.+|||+||| +|.++..+++....+|+|+|+++. ++.++++|+... ++++++||+|+
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 34556788999999999 999999999873459999999976 478889997543 55678999999
Q ss_pred HH-Hhhcc-------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 168 SN-VFDHA-------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 168 ~~-~l~h~-------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
++ .+.+. ....++++++.++|||||++++.++... ....++.+.+.+.|+
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------KLLNVIKERGIKLGY 198 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------HHHHHHHHHHHHTTC
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------hHHHHHHHHHHHcCC
Confidence 86 33222 2247889999999999999999876321 135678888899888
Q ss_pred EEEE--EecCCCCceEEEEEcccc
Q 025148 228 VRVR--KVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 228 ~~~~--~~~gf~~~~~vv~~k~~~ 249 (257)
.... ...|+.....+++.|...
T Consensus 199 ~~~~~~~~~g~~~~~~l~f~~~~~ 222 (230)
T 3evz_A 199 SVKDIKFKVGTRWRHSLIFFKGIS 222 (230)
T ss_dssp EEEEEEECCCC-CEEEEEEECCC-
T ss_pred ceEEEEecCCCeEEEEEEEecccc
Confidence 4333 234777667788877554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=126.88 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=95.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCC---CCCCCCchhHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHR---QPFDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~---~~~~~~~fD~V 166 (257)
...+++|++|||+|||+|.++..+++. +.++|+|+|+++. ++..+.+|... .++..+++|+|
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE
Confidence 344699999999999999999999985 4579999999966 45566666654 35667889998
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe--cCCCCceEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV--DGFGLDTEVVF 244 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~gf~~~~~vv~ 244 (257)
+++ +.|..++..++.++++.|||||.+++..........-.... ...+..+.+.+.||...... ..|..+-.+++
T Consensus 152 f~d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~--~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~ 228 (233)
T 4df3_A 152 YAD-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE--VYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIY 228 (233)
T ss_dssp EEC-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH--HHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEE
T ss_pred EEe-ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH--HHHHHHHHHHHCCCEEEEEEccCCCCCceEEEE
Confidence 875 34556788899999999999999998753211100000001 12334556777888765554 47765544444
Q ss_pred E
Q 025148 245 R 245 (257)
Q Consensus 245 ~ 245 (257)
.
T Consensus 229 ~ 229 (233)
T 4df3_A 229 A 229 (233)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-16 Score=129.08 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC--CCCCCchhHHHH---
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ--PFDDETFDFEFS--- 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~--~~~~~~fD~V~~--- 168 (257)
..+|++|||||||+|..+..+++....+++|||+|+. .+.++.++..+. ++++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 4678999999999999999998875568999999976 245666776543 577888998753
Q ss_pred ---HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 ---NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ---~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+++|..++..++++++|+|||||+|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 378889999999999999999999998753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-15 Score=121.86 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCC----CCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQ----PFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~~~ 169 (257)
++++.+|||+|||+|..+..+++. +.++|+|+|+|+. ++.++.+|+... ++. ++||+|+++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 467889999999999999999885 4469999999973 455667777663 444 789999998
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.++ .+...++++++|+|||||.+++.++
T Consensus 134 ~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 IAQK-NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CCST-THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCh-hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5333 3344568999999999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-15 Score=120.13 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=90.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFE- 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V- 166 (257)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+.++|+.++++++++ |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 467889999999999999999986 3579999999975 357889999999988766 654
Q ss_pred --HH-HHh--hccccHHHHHHHHHHhccCCcEEEEEeccCCCcC---cCCCCCcC----ChhHHHHhcccCCcEEEE
Q 025148 167 --FS-NVF--DHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD---KYSANDLF----SVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 167 --~~-~~l--~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~y~~~~~~----~~~~~~~~f~~~~~~~~~ 231 (257)
++ ... +|+.++.++++++.++|||||.+++......... .......+ ..+.+...+.+.||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 33 233 4888999999999999999999999764322110 01111111 233477788889986544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=122.83 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=98.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
.++.+|||+|||+|.++..+++. +..+++++|++ . ++.+..+|+.+.+++++ ||+|++ ++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 66789999999999999999886 55699999998 4 36788999988777665 999988 69
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCc---------------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADK---------------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---------------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+.++ .++++++.++|||||++++..+....... ......++.+++.+++++.||..+...
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 9999544 68999999999999999887654321100 013355789999999999999877765
Q ss_pred c
Q 025148 234 D 234 (257)
Q Consensus 234 ~ 234 (257)
.
T Consensus 322 ~ 322 (335)
T 2r3s_A 322 S 322 (335)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=122.53 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+ +++++ |+|++ +++||+.+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 456789999999999999999885 6678999998 32 56788999887 77765 99888 69998886
Q ss_pred HH--HHHHHHHHhccCCcEEEEEeccCCCcC------------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PD--KFVMEIERTLKPGGVCVLHVALSKRAD------------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~------------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.. +++++++++|||||++++......... .......++.+++.++++++||..+....
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 354 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVAS 354 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEE
Confidence 54 789999999999999998754321100 01123456889999999999998877665
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-15 Score=118.82 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=94.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
+.++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.+..+|+.+. .+++||+|+++ .+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcH
Confidence 4578899999999999999999887779999999965 277888888764 45789999986 55
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
++ ..++++++.++|||||.+++...... +...+.+++.+.|+..+.....-+ ...++.++
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~~~~~Gf~~~~~~~~~~-w~~~~~~~ 195 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDYL-----------QLPKIEQALAENSFQIDLKMRAGR-WIGLAISR 195 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEGG-----------GHHHHHHHHHHTTEEEEEEEEETT-EEEEEEEE
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCcc-----------cHHHHHHHHHHcCCceEEeeccCC-EEEEEEec
Confidence 54 36789999999999999999754322 467888999999998766554323 23344443
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=123.42 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=96.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.+.++.+|||||||+|..+..+++. +..+++++|+++. ++.+..+|+. .+++ +||+|++ +++
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vl 257 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRIL 257 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCG
T ss_pred CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhc
Confidence 3567789999999999999999885 5668999997521 3678888986 3444 7999988 699
Q ss_pred hccccH--HHHHHHHHHhccCCcEEEEEeccCCCcC-------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYP--DKFVMEIERTLKPGGVCVLHVALSKRAD-------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
||+.++ .+++++++++|||||++++......... .......++.+++.+++++.||..+....
T Consensus 258 h~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 258 HNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp GGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 999988 5899999999999999999764322110 01122456899999999999998877765
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-14 Score=122.25 Aligned_cols=138 Identities=10% Similarity=0.077 Sum_probs=102.9
Q ss_pred CCC-CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHH-
Q 025148 108 LSN-ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFS- 168 (257)
Q Consensus 108 ~~~-~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~- 168 (257)
..+ +.+|||||||+|.++..+++. +..+++++|+... ++.+..+|+.+.+ +.++.||+|++
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence 344 789999999999999999885 5679999999321 3678899988765 13456999988
Q ss_pred HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcC---------------cCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRAD---------------KYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~---------------~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++|+.++ .+++++++++|||||++++..+...... .......++.+++.+++++.||..+.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 699999866 7899999999999999998764221100 01123467899999999999998887
Q ss_pred EecCCCCceEEEEEcc
Q 025148 232 KVDGFGLDTEVVFRKN 247 (257)
Q Consensus 232 ~~~gf~~~~~vv~~k~ 247 (257)
...|. ...++.+|.
T Consensus 336 ~~~g~--~~l~~a~kp 349 (352)
T 3mcz_A 336 RSIGR--YTLLIGQRS 349 (352)
T ss_dssp EEETT--EEEEEEECC
T ss_pred eccCc--eEEEEEecC
Confidence 55443 344555553
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-15 Score=126.24 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC--CCCCCchhHHHH-H-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ--PFDDETFDFEFS-N- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~--~~~~~~fD~V~~-~- 169 (257)
..++.+|||||||+|.++..+++.+..+|+|+|+|+. ++.++++|+.++ ++++++||+|++ .
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4578899999999999999998766569999999965 356788898888 889999999988 2
Q ss_pred H----hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 V----FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~----l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ..|..+.+.++++++|+|||||++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 2233345578999999999999999764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=119.79 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=92.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCC----CCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHR----QPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~----~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.++.+|+.+ .++. ++||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~-- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY-- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE--
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE--
Confidence 467889999999999999999986 5569999999964 45678889887 6666 7899987
Q ss_pred HhhccccH---HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCc-eEEE
Q 025148 170 VFDHALYP---DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLD-TEVV 243 (257)
Q Consensus 170 ~l~h~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~-~~vv 243 (257)
+++.++ ..+++++.++|||||.+++............. ..+..+++. ++.+.||..+.... .|..+ ..++
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~ 224 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-KEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFV 224 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-HHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCH-HHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEE
Confidence 455666 77899999999999999997421110000000 011235566 77888886655543 55333 3455
Q ss_pred EEccc
Q 025148 244 FRKNA 248 (257)
Q Consensus 244 ~~k~~ 248 (257)
.+|+.
T Consensus 225 ~~k~~ 229 (230)
T 1fbn_A 225 GIWEG 229 (230)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 55543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-15 Score=122.65 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=88.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecC-CCCCCC-CCchhHHHHHHhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDF-HRQPFD-DETFDFEFSNVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~-~~~~~~-~~~fD~V~~~~l~h~~ 175 (257)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.++++|+ ..+|++ +++||+|+++ .
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~ 119 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----R 119 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----S
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----C
Confidence 4678899999999999999999885 49999999965 578999999 567888 8999999886 4
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++..+++++.++|||||.++... ...+...+...+.+.||.....
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFLYVG------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEEEEE------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEeC------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 67789999999999999999221 1125678888899988875543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=115.24 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=86.7
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+. ++.++.+|+.+.....++||+|+++
T Consensus 36 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 115 (204)
T 3e05_A 36 LRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIG 115 (204)
T ss_dssp TTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEES
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEEC
Confidence 345678899999999999999999874 579999999975 4667888886654444679999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
.++ ++.++++++.++|||||++++..+... +...+.+.+++.|+
T Consensus 116 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 116 GSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------TLTKAVEFLEDHGY 160 (204)
T ss_dssp CCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH-----------HHHHHHHHHHHTTC
T ss_pred CCCc---CHHHHHHHHHHhcCCCeEEEEEecccc-----------cHHHHHHHHHHCCC
Confidence 443 778999999999999999999875332 45677788888887
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=119.73 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCc
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~ 162 (257)
.++..++......++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+++++ ++
T Consensus 28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 105 (252)
T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NE 105 (252)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SC
T ss_pred HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CC
Confidence 4444444444446678999999999999999998764 9999999965 467899999988765 67
Q ss_pred hhHHHHH--Hhhcc--ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 163 FDFEFSN--VFDHA--LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 163 fD~V~~~--~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
||+|++. .++|. .+..++++++.++|||||.+++.+++
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 9999863 44444 35678999999999999999998754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=114.17 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=74.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-C--CCcEEEecCCCC----CCcEEEecCCCCC----------------------
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-G--VSDSVGIDLVPY----PPLVIEGDFHRQP---------------------- 157 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~----~~~~~~~d~~~~~---------------------- 157 (257)
.++++.+|||+|||+|.++..+++. + ..+|+|+|+|+. ++.++++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHH
Confidence 3577889999999999999999885 4 479999999986 4778899998876
Q ss_pred ---CCCCchhHHHHH-Hhhcc----ccH-------HHHHHHHHHhccCCcEEEEEec
Q 025148 158 ---FDDETFDFEFSN-VFDHA----LYP-------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 158 ---~~~~~fD~V~~~-~l~h~----~~~-------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++++||+|+++ .+++. .+. .++++++.++|||||.+++.+.
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 567899999986 43332 222 2378999999999999999764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-15 Score=126.68 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------------CCcEEEecCCCCC----CC--C
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------------PPLVIEGDFHRQP----FD--D 160 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------------~~~~~~~d~~~~~----~~--~ 160 (257)
.++.+|||+|||+|.++..+++.+..+++|+|+|+. ++.++++|+.+.+ ++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 467899999999999999998876679999999965 2467899998876 54 4
Q ss_pred CchhHHHH-HHhhcc----ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 161 ETFDFEFS-NVFDHA----LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~----~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++||+|+| .+++|+ .++..+++++.++|||||.+++.++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 58999988 488777 45678999999999999999999874
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=119.03 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=95.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
... .+|||+|||+|..+..+++. +..+++++|+ +. ++.+..+|+.+ +++ ++||+|++ +
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR 241 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence 344 89999999999999999885 5669999999 65 36778888877 555 57999988 6
Q ss_pred HhhccccHH--HHHHHHHHhccCCcEEEEEeccCCCcCc-------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 170 VFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRADK-------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 170 ~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~-------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+++|+.++. +++++++++|||||++++.......... ......++..++.+++++.||..+....
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 999888766 8999999999999999998643211000 0012345889999999999998776554
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=110.94 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=78.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHH-Hh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSN-VF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~-~l 171 (257)
.+.++.+|||+|||+|.++..+++. + ..+++|+|+++. ++.+..+|+.+.+ +++++||+|+++ .+
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~ 98 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence 3577889999999999999999886 3 469999999982 4567888888876 777899999985 56
Q ss_pred hccccH-----------HHHHHHHHHhccCCcEEEEEeccC
Q 025148 172 DHALYP-----------DKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 172 ~h~~~~-----------~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
++..++ .++++++.++|||||.+++.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 555544 688999999999999999987643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=116.46 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=77.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~-~ 170 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+.+ +++++||+|+++ .
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 467899999999999999888877778999999965 3578888887763 457889999997 6
Q ss_pred hhcc-ccHHHHHHHHHH--hccCCcEEEEEeccC
Q 025148 171 FDHA-LYPDKFVMEIER--TLKPGGVCVLHVALS 201 (257)
Q Consensus 171 l~h~-~~~~~~l~~~~r--~LkpgG~l~i~~~~~ 201 (257)
+++. .+..++++++.+ +|||||.+++..+..
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6664 678899999999 999999999988643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-14 Score=124.84 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=102.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC--CCCCCchhHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDDETFDFEFS- 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~~~fD~V~~- 168 (257)
....+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+. |++ ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 45679999999999999999885 5679999998 43 367889999875 466 67999988
Q ss_pred HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCCc------------------CcCCCCCcCChhHHHHhcccCCcE
Q 025148 169 NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRA------------------DKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 169 ~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~------------------~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
++++|+.++ .+++++++++|||||++++..+..... ........++.+++.+++++.||.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 699988765 478999999999999999876432210 011122466899999999999998
Q ss_pred EEEEec--CCCCceEEEEEcc
Q 025148 229 RVRKVD--GFGLDTEVVFRKN 247 (257)
Q Consensus 229 ~~~~~~--gf~~~~~vv~~k~ 247 (257)
.+.... |.. .+.+..++.
T Consensus 336 ~v~~~~~~g~~-~svi~~~~~ 355 (363)
T 3dp7_A 336 VEEIQDNIGLG-HSILQCRLK 355 (363)
T ss_dssp ESCCCCCBTTT-BEEEEEEEC
T ss_pred EEEEEeCCCCC-ceEEEEeec
Confidence 877664 444 244444443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=121.83 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=98.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
...++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+. .+++. .||+|++
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~ 275 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIK 275 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEE
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhh
Confidence 3466789999999999999999885 5679999998 44 4678899988 46665 7999988
Q ss_pred HHhhccccHH--HHHHHHHHhccCCcEEEEEeccCCCcC------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 169 NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRAD------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 169 ~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++++|+.++. +++++++++|||||++++..+...... .......++.+++.+++++.||..+....
T Consensus 276 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 276 HVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 6999998876 799999999999999999764322100 01112446899999999999998877765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=120.59 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=99.1
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchh
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD 164 (257)
++......++.+|||||||+|.++..+++. +..+++++|+ +. .+.+..+|+.+.++++. |
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D 258 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--D 258 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--S
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--C
Confidence 333333567789999999999999999885 5669999999 55 26788999988877654 9
Q ss_pred HHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCCc--C--------------cCCCCCcCChhHHHHhcccC
Q 025148 165 FEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKRA--D--------------KYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 165 ~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~--------------~y~~~~~~~~~~~~~~f~~~ 225 (257)
+|++ ++++|+.+ ..+++++++++|||||++++........ . ......+++.+++.+++++.
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 9888 69999987 7889999999999999998875322110 0 00111337899999999999
Q ss_pred CcEEEEEec
Q 025148 226 EMVRVRKVD 234 (257)
Q Consensus 226 ~~~~~~~~~ 234 (257)
||..+....
T Consensus 339 Gf~~v~~~~ 347 (359)
T 1x19_A 339 GYKDVTMVR 347 (359)
T ss_dssp TCEEEEEEE
T ss_pred CCceEEEEe
Confidence 998766554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=116.12 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=72.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
..+.++.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.+++.+..+++ +.+++||+|+++
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 18 EVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred HhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 34578899999999999999999988 469999999975 3566776666642 457889999775
Q ss_pred --Hhh--------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 --VFD--------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 --~l~--------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+. +..+..++++++.++|||||.+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 333 223556788999999999999999874
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-14 Score=124.20 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=95.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.++.+|+.+ ++++ ||+|++ +++||+.+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence 456789999999999999999986 4668899997 33 46788899887 6665 999988 69999998
Q ss_pred HH--HHHHHHHHhccCCcEEEEEeccCCC-cC-c---------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PD--KFVMEIERTLKPGGVCVLHVALSKR-AD-K---------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~--~~l~~~~r~LkpgG~l~i~~~~~~~-~~-~---------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+. +++++++++|||||++++....... .+ . ......++..++.+++++.||..+....
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 88 8999999999999999987432110 00 0 0112446888999999999997766554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=115.48 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=77.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------C--CcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------P--PLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~--~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...++.+|||+|||+|.++..+++. ..+++|+|+++. + +.+..+|+.+ +.++++||+|+++
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~ 126 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEEC
Confidence 3457889999999999999999887 569999999965 2 6778888877 4457789999986
Q ss_pred -Hhhc-cccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 170 -VFDH-ALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 170 -~l~h-~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
.++| ..+..++++++.++|||||.+++.++..
T Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 6665 4567789999999999999999998643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=122.22 Aligned_cols=123 Identities=10% Similarity=0.122 Sum_probs=95.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. .+.+..+|+.+ ++++ ||+|++ ++++|+.+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 356789999999999999999985 5679999998 43 36778888876 5553 999988 69999998
Q ss_pred HH--HHHHHHHHhccC---CcEEEEEeccCCCcCc----------C------CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PD--KFVMEIERTLKP---GGVCVLHVALSKRADK----------Y------SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~----------y------~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+. +++++++++||| ||++++..+....... + .....++..++.+++++.||..+....
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 87 899999999999 9999987643211000 0 112345788999999999997766554
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-14 Score=121.51 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
.+..+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+. .+++. +||+|++ ++
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 44679999999999999999875 5678999998 44 4678889987 45555 7999988 69
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCc----------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADK----------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++|+.++ .+++++++++|||||++++..+....... ......++.+++.+++++.||..+....
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999986 78999999999999999998653321100 1112456899999999999998777664
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=123.60 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=100.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+ +++.+ ||+|++ +
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~ 256 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSF 256 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEES
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEec
Confidence 467789999999999999999886 4569999998 43 46788889875 44444 999988 6
Q ss_pred HhhccccHH--HHHHHHHHhccCCcEEEEEec--cCCCc--C-----------cCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 170 VFDHALYPD--KFVMEIERTLKPGGVCVLHVA--LSKRA--D-----------KYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 170 ~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~--~~~~~--~-----------~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+++|+.++. +++++++++|||||++++..+ ..... . .......++.+++.+++++.||..+..
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 336 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 999998775 899999999999999998765 21100 0 001124568999999999999987665
Q ss_pred ec--CCCCc---eEEEEEcccc
Q 025148 233 VD--GFGLD---TEVVFRKNAK 249 (257)
Q Consensus 233 ~~--gf~~~---~~vv~~k~~~ 249 (257)
.. +.... ..+..+|.+.
T Consensus 337 ~~~~~~~~~~~~~~i~~~~~~~ 358 (374)
T 1qzz_A 337 RTSGSTTLPFDFSILEFTAVSE 358 (374)
T ss_dssp EEECCSSCSSCEEEEEEEECC-
T ss_pred EECCCCcccCCcEEEEEEECcc
Confidence 54 22111 4556565543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=117.86 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=74.8
Q ss_pred hhcCCCCCeEEEECCCCCHHH-HHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEV-EALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...++++++|||||||+|.++ ..+++...++|+|+|+|+. ++.++++|+.+++ +++||+|++
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 345688999999999998765 4456655679999999976 4678899998865 789999987
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
... ..++.++++++.|+|||||++++...
T Consensus 195 ~a~--~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 195 AAL--AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CTT--CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCC--ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 533 57889999999999999999999764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-14 Score=116.49 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 170 (257)
.++.+|||||||+|.++..+++. +..+++|+|+|+. ++.++++|+.+++ +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 35789999999999999999885 4679999999965 4678899998876 7788999998862
Q ss_pred h-hccc--------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 F-DHAL--------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l-~h~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
- .+.. ....+++++.++|||||.+++.+.... ....+.+.+.+.|+......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG-----------LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH-----------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH-----------HHHHHHHHHHHCCCeeeecc
Confidence 2 1111 125799999999999999999874221 13456667777787655543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-14 Score=116.66 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=89.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCCCC---CCCCchhHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHRQP---FDDETFDFEFS 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~V~~ 168 (257)
.+++|.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++.+|+.... ...++||+|++
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 3678999999999999999999885 3679999999973 5677888887642 12468999999
Q ss_pred HHhhccccHHHHH-HHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCc-eEEEE
Q 025148 169 NVFDHALYPDKFV-MEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLD-TEVVF 244 (257)
Q Consensus 169 ~~l~h~~~~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~-~~vv~ 244 (257)
++-. .+..+.+ ..+.+.|||||.+++.+............. ..+.....+++.+|..+.... .|.-+ ..++.
T Consensus 153 d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e--~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~ 228 (232)
T 3id6_C 153 DIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE--IYKTEVEKLENSNFETIQIINLDPYDKDHAIVLS 228 (232)
T ss_dssp CCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS--STTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEE
T ss_pred cCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH--HHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEE
Confidence 7432 3444444 566679999999999863211111111111 224556677778887766665 45433 34444
Q ss_pred Ec
Q 025148 245 RK 246 (257)
Q Consensus 245 ~k 246 (257)
++
T Consensus 229 ~~ 230 (232)
T 3id6_C 229 KY 230 (232)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-14 Score=127.76 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCCCCeEEEECCC------CCHHHHHHHHc--CCCcEEEecCCCC------CCcEEEecCCCCCCC------CCchhHHH
Q 025148 108 LSNESKALCIGAR------VGQEVEALKRV--GVSDSVGIDLVPY------PPLVIEGDFHRQPFD------DETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG------~G~~~~~l~~~--~~~~v~gvD~s~~------~~~~~~~d~~~~~~~------~~~fD~V~ 167 (257)
..++.+||||||| +|..+..+.+. +.++|+|+|+|+. ++.++++|+.++++. +++||+|+
T Consensus 214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi 293 (419)
T 3sso_A 214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI 293 (419)
T ss_dssp TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence 3567899999999 66556555543 5679999999987 578899999998877 78999999
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+..++..+..+++++++|+|||||++++....
T Consensus 294 sdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 294 DDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 986677788899999999999999999998643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-14 Score=128.13 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC------------------------CCCcEEEe
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP------------------------YPPLVIEG 151 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~------------------------~~~~~~~~ 151 (257)
..+..++....+.++++|||||||+|.++..++.. +..+|+|||+++ .++.++++
T Consensus 160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 44445555556788999999999999999999875 544699999995 24678999
Q ss_pred cCCCCCCCC--CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 152 DFHRQPFDD--ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 152 d~~~~~~~~--~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+.++++.+ ..||+|++|.+.|.++..+.+.+++|+|||||++++.-+
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 999988754 468999987444667888999999999999999998754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-14 Score=117.33 Aligned_cols=123 Identities=18% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
+.++.+|||+|||+|.++..+++.+. +|+|+|+++. .+.+..+|+.+. +++++||+|+++.+.|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 56788999999999999999998876 9999999976 156677776652 4567899999873322
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
....+++++.++|||||+++++..... +...+.+.+.+.||........-+ ...++++|
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~~~~-----------~~~~v~~~l~~~Gf~~~~~~~~~~-W~~l~~~k 254 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGILKD-----------RAPLVREAMAGAGFRPLEEAAEGE-WVLLAYGR 254 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------GHHHHHHHHHHTTCEEEEEEEETT-EEEEEEEC
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEeeccC-----------CHHHHHHHHHHCCCEEEEEeccCC-eEEEEEEC
Confidence 245789999999999999999764322 477888999999987665544222 23355543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-13 Score=117.54 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhccccH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
+.+..+|||||||+|.++..+++. +..+++++|+.. .++.+..+|+.+ +++++ |+|++ +++||+.+.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ 275 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence 456789999999999999999875 667899999831 157889999987 77765 99888 699988654
Q ss_pred --HHHHHHHHHhccCCcEEEEEeccCCCc--C----------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 --DKFVMEIERTLKPGGVCVLHVALSKRA--D----------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 --~~~l~~~~r~LkpgG~l~i~~~~~~~~--~----------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.+++++++++|||||++++........ . .......++.+++.++++++||..+....
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 352 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTY 352 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 578999999999999999875432110 0 01122456789999999999998777665
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-14 Score=111.42 Aligned_cols=106 Identities=15% Similarity=0.025 Sum_probs=79.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
....++.+|||+|||+|.++..+++. +..+|+|+|+++. ++ ++.+|..+ ++..+++||+|+
T Consensus 21 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~ 99 (178)
T 3hm2_A 21 LAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIF 99 (178)
T ss_dssp HCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEE
T ss_pred hcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEE
Confidence 34567889999999999999999886 4679999999975 23 66677643 233237899998
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
++ +++| .++++++.++|||||.+++...... +......++.+.++
T Consensus 100 ~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~~~~~~~ 145 (178)
T 3hm2_A 100 IGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE-----------SEQMLWALRKQFGG 145 (178)
T ss_dssp ECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH-----------HHHHHHHHHHHHCC
T ss_pred ECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc-----------cHHHHHHHHHHcCC
Confidence 85 7776 6799999999999999999875332 34455666666654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-14 Score=118.82 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=89.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCC---CCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHR---QPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~---~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+..+|+.+ +++.+++||+|+++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 567889999999999999999986 3469999999953 56788888887 34567889999986
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe--cCCCCce
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV--DGFGLDT 240 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~gf~~~~ 240 (257)
.. .......++.++.++|||||++++.+.............++. .+ .+++.+.||..+... ..|..+.
T Consensus 155 ~~-~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~-~~-~~~l~~~Gf~~~~~~~~~~~~~~~ 224 (233)
T 2ipx_A 155 VA-QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFA-SE-VKKMQQENMKPQEQLTLEPYERDH 224 (233)
T ss_dssp CC-CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHH-HH-HHTTGGGTEEEEEEEECTTTSSSE
T ss_pred CC-CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHH-HH-HHHHHHCCCceEEEEecCCccCCc
Confidence 33 222234568899999999999999764311000000001111 22 578899999766643 3565443
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-14 Score=119.21 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=74.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCCCCC-----CCCchhHHH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHRQPF-----DDETFDFEF 167 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~~~~-----~~~~fD~V~ 167 (257)
++....+.++.+|||||||+|.++..+++.+. +|+|+|+|+.+ ...+..++.+.+. .+++||+|+
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv 115 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVL 115 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEE
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEE
Confidence 33344457889999999999999999999864 99999999761 1134555555443 256899999
Q ss_pred HH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ +++|+. +...+++++.++| |||.++++++
T Consensus 116 ~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 116 NDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred EhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 95 888875 5567899999999 9999999975
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=125.23 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=91.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. .+.++.+|+.+.+.++++||+|+++ .++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 3678999999999999999999864 9999999965 4678999999887777899999997 6766
Q ss_pred -----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 174 -----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 174 -----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
..+..++++++.++|||||.+++.+.... . ....+.+.|.... .+ ...||.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l---~-------~~~~l~~~f~~v~--~l-~~~gF~ 366 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL---K-------YEPLLEEKFGAFQ--TL-KVAEYK 366 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS---C-------HHHHHHHHHSCCE--EE-EESSSE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC---C-------hHHHHHHhhccEE--EE-eCCCEE
Confidence 45678899999999999999999875322 1 1344556666543 34 557887
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=111.07 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=73.3
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----CCcEEEecCCCCCCC-----------CCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----PPLVIEGDFHRQPFD-----------DETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----~~~~~~~d~~~~~~~-----------~~~fD~V~~~~ 170 (257)
..++++.+|||+|||+|.++..+++. .++|+|+|+++. ++.++++|+.+.+.. .++||+|+|+.
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA 99 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence 34578899999999999999999987 569999999986 678899999886521 14899998851
Q ss_pred ---------hhcc---ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 ---------FDHA---LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 ---------l~h~---~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+|. ...+.+++++.++|||||.+++.+.
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2221 1235678999999999999998774
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=112.25 Aligned_cols=107 Identities=14% Similarity=-0.018 Sum_probs=82.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.++.+|||+|||+|.++..+++. ..+|+|+|+++. ++.++.+|+.+......+||+|+++
T Consensus 51 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~ 129 (204)
T 3njr_A 51 LAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIG 129 (204)
T ss_dssp HCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEEC
T ss_pred cCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEEC
Confidence 34567889999999999999999988 569999999965 3567888888743334579999875
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
. ..++. +++++.++|||||++++.....+ +...+.+++++.++.
T Consensus 130 ~---~~~~~-~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~l~~~g~~ 173 (204)
T 3njr_A 130 G---GGSQA-LYDRLWEWLAPGTRIVANAVTLE-----------SETLLTQLHARHGGQ 173 (204)
T ss_dssp S---CCCHH-HHHHHHHHSCTTCEEEEEECSHH-----------HHHHHHHHHHHHCSE
T ss_pred C---cccHH-HHHHHHHhcCCCcEEEEEecCcc-----------cHHHHHHHHHhCCCc
Confidence 2 11566 99999999999999999886433 355666777777653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=121.81 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC---------------CCCcEEEecCCCCCCCCCchhHHHHH---
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP---------------YPPLVIEGDFHRQPFDDETFDFEFSN--- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---------------~~~~~~~~d~~~~~~~~~~fD~V~~~--- 169 (257)
+.++.+|||||||+|.++..+++.+..+|+|+|+|+ .++.++.+|+.++++++++||+|+++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 467889999999999999999998766999999995 24678899999999888899999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEE
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~ 195 (257)
.+.|..+...++.++.++|||||.++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 35666678889999999999999988
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-14 Score=117.59 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCCCC--------------cEEEecCCCCCCCC-----CchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPYPP--------------LVIEGDFHRQPFDD-----ETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~--------------~~~~~d~~~~~~~~-----~~fD~V~~ 168 (257)
.++.+|||+|||+|.++..+++.. ..+++|+|+|+..+ .+.++|+.+ ++++ ++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 577899999999999999999863 55999999998733 233344443 4444 88999988
Q ss_pred H-------Hhhcccc--------------------HHHHHHHHHHhccCCcE-EEEEeccCCCcCcCCCCCcCChhHHHH
Q 025148 169 N-------VFDHALY--------------------PDKFVMEIERTLKPGGV-CVLHVALSKRADKYSANDLFSVKPLVK 220 (257)
Q Consensus 169 ~-------~l~h~~~--------------------~~~~l~~~~r~LkpgG~-l~i~~~~~~~~~~y~~~~~~~~~~~~~ 220 (257)
+ .++|+.. ..++++++.++|||||+ +++.++.. ....+.+
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~ 175 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN------------QADEVAR 175 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS------------CHHHHHH
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc------------cHHHHHH
Confidence 4 2222221 16788999999999999 66655421 4678888
Q ss_pred hcc--cCCcEEEEEec-CCCCceEEEEEccc
Q 025148 221 LFK--RSEMVRVRKVD-GFGLDTEVVFRKNA 248 (257)
Q Consensus 221 ~f~--~~~~~~~~~~~-gf~~~~~vv~~k~~ 248 (257)
++. +.++..+.... ..+..+.++.+++.
T Consensus 176 ~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 176 LFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp HTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred HHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 898 88887665554 23333555555543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=118.08 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=94.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+ +++.+ ||+|++ +
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~ 257 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSF 257 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEES
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEcc
Confidence 466789999999999999999885 4568999998 54 36788888875 44444 999888 6
Q ss_pred HhhccccH--HHHHHHHHHhccCCcEEEEEecc-CCCcC--c-----------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYP--DKFVMEIERTLKPGGVCVLHVAL-SKRAD--K-----------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~-~~~~~--~-----------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++|+.++ .+++++++++|||||++++..+. ..... . ......++.+++.+++++.||..+...
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 337 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999877 47999999999999999987654 21100 0 011245689999999999999776654
Q ss_pred c
Q 025148 234 D 234 (257)
Q Consensus 234 ~ 234 (257)
.
T Consensus 338 ~ 338 (360)
T 1tw3_A 338 Q 338 (360)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-14 Score=123.63 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN---- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~---- 169 (257)
.++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.++.+|+.++++++++||+|+++
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 467899999999999999999987779999999952 2688999999999998999999985
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+.+..+...+++++.|+|||||+++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 2445568889999999999999998744
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=131.33 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC---------------------CCcEEEecCCCCCCCCCchhH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY---------------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~---------------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+. ++.+.++|+.++++++++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 3688999999999999999998752 59999999964 257889999999999999999
Q ss_pred HHH-HHhhccccHH--HHHHHHHHhccCCcEEEEEeccC
Q 025148 166 EFS-NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 166 V~~-~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
|++ .+++|+.++. .+++++.++|||| .+++.+|+.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 998 5999999876 5899999999999 899988765
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=111.25 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=72.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CC---------CcEEEecCCCC----CCcEE-EecCCCCC--------CCCCc
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GV---------SDSVGIDLVPY----PPLVI-EGDFHRQP--------FDDET 162 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~---------~~v~gvD~s~~----~~~~~-~~d~~~~~--------~~~~~ 162 (257)
..+.++.+|||+|||+|.++..+++. +. .+|+|+|+++. .+.+. .+|+.+.+ +++++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 34678899999999999999999986 43 68999999986 35677 77776543 34568
Q ss_pred hhHHHHH-H----hhccccH-------HHHHHHHHHhccCCcEEEEEec
Q 025148 163 FDFEFSN-V----FDHALYP-------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 163 fD~V~~~-~----l~h~~~~-------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+|+|+ . .+|..+. ..+++++.++|||||.+++.+.
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 9999874 2 2233333 4789999999999999999875
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-14 Score=118.25 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=72.9
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEE--EecCCCCCCCCCc
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVI--EGDFHRQPFDDET 162 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~--~~d~~~~~~~~~~ 162 (257)
++.....++++.+|||+|||+|.++..+++. .+|+|+|+++. ++.++ ++|+.+++ +++
T Consensus 65 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~ 140 (265)
T 2oxt_A 65 WMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VER 140 (265)
T ss_dssp HHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCC
T ss_pred HHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCC
Confidence 3334456678899999999999999999987 59999999874 23456 77887765 678
Q ss_pred hhHHHHHHhhccccH----H---HHHHHHHHhccCCc--EEEEEec
Q 025148 163 FDFEFSNVFDHALYP----D---KFVMEIERTLKPGG--VCVLHVA 199 (257)
Q Consensus 163 fD~V~~~~l~h~~~~----~---~~l~~~~r~LkpgG--~l~i~~~ 199 (257)
||+|+|+..++..++ . ++++++.++||||| .+++.+.
T Consensus 141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 999999633333222 1 37899999999999 9998764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-14 Score=117.25 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=86.4
Q ss_pred CC-CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCchhHHHH
Q 025148 108 LS-NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFS 168 (257)
Q Consensus 108 ~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~ 168 (257)
.. ++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++++|+.+.+ +++++||+|++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~ 125 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC 125 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence 35 68899999999999999999976569999999965 3678889988875 55789999998
Q ss_pred H-Hhh-----cc---------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 169 N-VFD-----HA---------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 169 ~-~l~-----h~---------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
| .+. +. .+..++++++.++|||||++++..+.. ...++...+.+.++
T Consensus 126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~l~~~~~ 193 (259)
T 3lpm_A 126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE------------RLLDIIDIMRKYRL 193 (259)
T ss_dssp CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT------------THHHHHHHHHHTTE
T ss_pred CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH------------HHHHHHHHHHHCCC
Confidence 6 211 11 234578999999999999999976432 36677788888777
Q ss_pred EEEE
Q 025148 228 VRVR 231 (257)
Q Consensus 228 ~~~~ 231 (257)
....
T Consensus 194 ~~~~ 197 (259)
T 3lpm_A 194 EPKR 197 (259)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 5443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-14 Score=116.64 Aligned_cols=130 Identities=12% Similarity=-0.030 Sum_probs=92.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCC---CCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD---DETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~ 169 (257)
.++.+|||||||+|..+..++.. +..+|+|+|+|+. ++.++++|+.+++++ +++||+|+|.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 46789999999999999999863 5569999999974 467888888887654 6789999985
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe--c-CC--CCceEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV--D-GF--GLDTEVVF 244 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~-gf--~~~~~vv~ 244 (257)
. +.++..+++++.++|||||.+++..... .. ....++.+.+++.|+...... . .. +....+++
T Consensus 149 ~---~~~~~~~l~~~~~~LkpgG~l~~~~g~~-----~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~ 216 (240)
T 1xdz_A 149 A---VARLSVLSELCLPLVKKNGLFVALKAAS-----AE----EELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVI 216 (240)
T ss_dssp C---CSCHHHHHHHHGGGEEEEEEEEEEECC------CH----HHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred c---cCCHHHHHHHHHHhcCCCCEEEEEeCCC-----ch----HHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEE
Confidence 4 3568899999999999999999864211 00 023456677788887654432 1 11 11244566
Q ss_pred Eccccc
Q 025148 245 RKNAKS 250 (257)
Q Consensus 245 ~k~~~~ 250 (257)
+|...+
T Consensus 217 ~k~~~~ 222 (240)
T 1xdz_A 217 RKIKNT 222 (240)
T ss_dssp EECSCC
T ss_pred EecCCC
Confidence 665443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-14 Score=115.51 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 170 (257)
.++.+|||||||+|.++..+++. +..+++|+|+|+. ++.++++|+.+++ +++++||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 35789999999999999999985 5679999999965 4678888988765 6788899886542
Q ss_pred -hhccc--------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 -FDHAL--------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 -l~h~~--------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+.. ....+++++.++|||||.+++.+.
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 11111 135789999999999999999874
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-14 Score=113.20 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=74.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCC-CCCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FDDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~~~~fD~V~ 167 (257)
.++++.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++++|+.+++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 4577899999999999999999886 4569999999965 3578888988775 5668899998
Q ss_pred HH-Hh-h--------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VF-D--------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l-~--------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+ . +..+..++++++.++|||||++++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 86 22 1 122456799999999999999999874
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=113.79 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=92.2
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
++....+.++.+|||+|||+|.++..+++. + ..+|+++|+++. ++.+..+|+.+.++++++|
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCE
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCc
Confidence 333444678899999999999999999986 3 569999999853 3567888988887888899
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|+|++ +..++.++++++.++|||||.+++.++... ...++.+.+++.+|..+...
T Consensus 168 D~v~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 168 DGVAL----DLMEPWKVLEKAALALKPDRFLVAYLPNIT-----------QVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp EEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH-----------HHHHHHHHHTTTTEEEEEEE
T ss_pred CEEEE----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCceEEEE
Confidence 99987 456778999999999999999999887432 24456667777887655443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=117.49 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=89.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
..+.++.+|||+|||+|.++..+++. +..+|+|+|+++. ++.+..+|+.+ ++++++||+|+
T Consensus 106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi 184 (275)
T 1yb2_A 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVI 184 (275)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEE
T ss_pred cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEE
Confidence 34577889999999999999999886 3569999999853 35677888877 66778899998
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+ |.+++.++++++.++|||||++++.++... ....+.+.+.+.||..+...
T Consensus 185 ~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----------~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 185 A----DIPDPWNHVQKIASMMKPGSVATFYLPNFD-----------QSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp E----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH-----------HHHHHHHHSGGGTEEEEEEE
T ss_pred E----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCeEEEEE
Confidence 7 567888999999999999999999987432 24567777888887655544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=122.73 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=76.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
....++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.++++|+.+++++ ++||+|+++.
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~ 137 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence 345678899999999999999999987679999999932 268899999998877 7899999964
Q ss_pred hhcc----ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHA----LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~----~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.|. ..+..+++++.++|||||++++..
T Consensus 138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3332 457889999999999999998753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=108.97 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=82.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|.++..+++. +..+++|+|+|+. ++.+..+|+.+.+ ++++||+|+++.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4789999999999999999885 5679999999965 3677888888766 4578999988643
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
.+...+++++.++|||||.+++.... ...+++..++. +|..+.
T Consensus 142 -~~~~~~l~~~~~~L~~gG~l~~~~~~------------~~~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 142 -ASLNDMVSWCHHLPGEQGRFYALKGQ------------MPEDEIALLPE--EYQVES 184 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEESS------------CCHHHHHTSCT--TEEEEE
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEEeCC------------CchHHHHHHhc--CCceee
Confidence 45678999999999999999997631 14567777766 665444
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=115.84 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=91.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH---
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN--- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~--- 169 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+.++|+.+. +++++||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 56789999999999999999864 5679999999965 366778887763 446789999885
Q ss_pred -----------Hhhcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC
Q 025148 170 -----------VFDHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 170 -----------~l~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
+++|. .+..++++++.++|||||++++..+. .+..++.+++.+.|
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~~l~~~G 254 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------------QQGEAVRQAFILAG 254 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------SCHHHHHHHHHHTT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------hHHHHHHHHHHHCC
Confidence 22232 24577889999999999999998642 24778889999888
Q ss_pred cEEEEEe-cCCCCceEEEEE
Q 025148 227 MVRVRKV-DGFGLDTEVVFR 245 (257)
Q Consensus 227 ~~~~~~~-~gf~~~~~vv~~ 245 (257)
|..+... +-.+.++.++.+
T Consensus 255 f~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 255 YHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp CTTCCEEECTTSSEEEEEEE
T ss_pred CcEEEEEecCCCCCcEEEEE
Confidence 8544433 233434444443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=117.98 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEE--EecCCCCCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVI--EGDFHRQPFDD 160 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~--~~d~~~~~~~~ 160 (257)
+.++.....++++.+|||+|||+|.++..+++. .+|+|+|+++. ++.++ ++|+.+++ +
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~ 146 (276)
T 2wa2_A 71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--P 146 (276)
T ss_dssp HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--C
T ss_pred HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--C
Confidence 344444556678899999999999999999987 59999999874 23456 77887765 6
Q ss_pred CchhHHHHHHhhccccH----H---HHHHHHHHhccCCc--EEEEEec
Q 025148 161 ETFDFEFSNVFDHALYP----D---KFVMEIERTLKPGG--VCVLHVA 199 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~---~~l~~~~r~LkpgG--~l~i~~~ 199 (257)
++||+|+|+..++..++ . ++++++.++||||| .+++.+.
T Consensus 147 ~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 147 FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 78999999633332222 1 37899999999999 9998764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=116.14 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcE--------E---EecCCCCC---CCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLV--------I---EGDFHRQP---FDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~--------~---~~d~~~~~---~~~~~fD~V~~~-~l~h 173 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+... . ..++..++ ++..+||+|+++ ++++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 4577999999999999999999877799999999884422 1 22333333 344569998886 5554
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe-ccCCCcC-cCCCC--------CcCChhHHHHhcccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV-ALSKRAD-KYSAN--------DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~-~~~~~~~-~y~~~--------~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+ ..++.+++|+|||||.+++.+ |..+... ..... +.+..+++..++.+.||......
T Consensus 164 l---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 164 L---NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp G---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred H---HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4 679999999999999998864 3222111 11111 22356778888999999755543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=117.20 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCH----HHHHHHHc-C----CCcEEEecCCCC------------------------------------
Q 025148 110 NESKALCIGARVGQ----EVEALKRV-G----VSDSVGIDLVPY------------------------------------ 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~gvD~s~~------------------------------------ 144 (257)
++.+|||+|||+|. ++..+++. + ..+|+|+|+|+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55556654 3 348999999854
Q ss_pred ----------CCcEEEecCCCCCCC-CCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 ----------PPLVIEGDFHRQPFD-DETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 ----------~~~~~~~d~~~~~~~-~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.++|+.+.+++ +++||+|+| |++.|+.++ .+++++++++|||||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 134567778776665 578999999 799999766 689999999999999999853
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-13 Score=112.18 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=74.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.+..+|..+...++++||+|+++ +
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 45778999999999999999999884 59999999965 3678889988876677899999885 8
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++|+.+ ++.+.|||||++++.++.
T Consensus 153 ~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH------HHHHhcccCcEEEEEEcC
Confidence 888875 588999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-13 Score=115.24 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHHHhhccccH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~ 177 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.+..+|+.++++++++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~------ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------ 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC------
Confidence 57889999999999999999986 4569999999975 467899999999999999999987421
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR 203 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~ 203 (257)
...++++.++|||||.+++.++....
T Consensus 158 ~~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 158 PCKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp CCCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred hhhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 13589999999999999999886543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=113.81 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred CCCeEEEECCCC---CHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCC-----------CCCC
Q 025148 110 NESKALCIGARV---GQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQP-----------FDDE 161 (257)
Q Consensus 110 ~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~-----------~~~~ 161 (257)
...+|||||||+ |.++..+.+. +..+|+++|+|+. ++.++.+|+.+.+ ++.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 347999999999 9888777664 5579999999965 4678899987531 3335
Q ss_pred chhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCC-------cCcCC----CCCcCChhHHHHhcccCCc
Q 025148 162 TFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKR-------ADKYS----ANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 162 ~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~y~----~~~~~~~~~~~~~f~~~~~ 227 (257)
+||+|++ .+++|+.+ +.+++++++++|||||+|++.....+. ...|. ...+++.+++.++|. ||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l~--G~ 234 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQFG--DF 234 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTTT--TC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHhC--CC
Confidence 7999888 59999987 889999999999999999998764421 00011 224568899999984 55
Q ss_pred E
Q 025148 228 V 228 (257)
Q Consensus 228 ~ 228 (257)
.
T Consensus 235 ~ 235 (274)
T 2qe6_A 235 E 235 (274)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=109.31 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=81.6
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC-CchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD-ETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~-~~fD~V~~~ 169 (257)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. .+.+..+|+.+ ++++ ++||+|+++
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEEC
Confidence 45678899999999999999999877 69999999864 34567777665 3333 589999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
+++ +..++++++.++|+|||.+++..+... +..++.+.+.+.|+
T Consensus 108 ~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 108 GSGG---ELQEILRIIKDKLKPGGRIIVTAILLE-----------TKFEAMECLRDLGF 152 (192)
T ss_dssp CCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH-----------HHHHHHHHHHHTTC
T ss_pred CchH---HHHHHHHHHHHhcCCCcEEEEEecCcc-----------hHHHHHHHHHHCCC
Confidence 544 357899999999999999999876432 34566677777776
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=114.63 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=88.7
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
....+.++.+|||+|||+|.++..+++. + ..+|+|+|+++. .+.+..+|+.+. +++++||+
T Consensus 87 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~ 165 (255)
T 3mb5_A 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDH 165 (255)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEE
T ss_pred HhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCE
Confidence 3444678899999999999999999986 3 579999999965 267788888754 67788999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC--cEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE--MVRVRKV 233 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~--~~~~~~~ 233 (257)
|++ +..++.++++++.++|||||.+++..+... ...++.+.+++.+ |..+...
T Consensus 166 v~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 166 VIL----DLPQPERVVEHAAKALKPGGFFVAYTPCSN-----------QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp EEE----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHTGGGBSCCEEE
T ss_pred EEE----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH-----------HHHHHHHHHHHcCCCccccEEE
Confidence 987 456778899999999999999999886432 3455666677776 6544443
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=115.90 Aligned_cols=123 Identities=9% Similarity=0.050 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhccccHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~ 178 (257)
..+.+|||||||+|.++..+++. +..+++++|++. .++.+..+|+.+ +++ +||+|++ +++||+.++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH
Confidence 45689999999999999999886 566899999841 146788888877 665 3999988 6999999877
Q ss_pred --HHHHHHHHhccC---CcEEEEEeccCCCcCc-----------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 179 --KFVMEIERTLKP---GGVCVLHVALSKRADK-----------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 179 --~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~-----------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+++++++++||| ||++++.......... ......++..++.+++++.||..+....
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 999999999999 9999987542211000 0112445889999999999997766554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-13 Score=110.33 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=77.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCCCCC-CCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFD-DETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~-~~~fD~V 166 (257)
..++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.+.++|+.++|.. .+.+|.|
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence 357789999999999999999864 5568999999942 245777888777421 1233333
Q ss_pred HHH-----Hhhcc-ccHHHHHHHHHHhccCCcEEEEEeccCCCcCc----CCCCCcCC-----hhHHHHhcccCCcEEEE
Q 025148 167 FSN-----VFDHA-LYPDKFVMEIERTLKPGGVCVLHVALSKRADK----YSANDLFS-----VKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 167 ~~~-----~l~h~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----y~~~~~~~-----~~~~~~~f~~~~~~~~~ 231 (257)
.++ ..+|. .++..++++++|+|||||.+++.+...+.... ......++ ..++...+.+.||....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 322 11222 24567899999999999999995432221110 00001111 22378888888886544
Q ss_pred E
Q 025148 232 K 232 (257)
Q Consensus 232 ~ 232 (257)
.
T Consensus 182 ~ 182 (225)
T 3p2e_A 182 V 182 (225)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=117.62 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN---- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~---- 169 (257)
.++.+|||||||+|.++..+++.+..+|+|+|+++. .+.++.+|+.++++++++||+|+++
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 457899999999999999999987679999999932 3678899999998888899999885
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.+.+...+..++.++.++|||||.++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 344455678899999999999999974
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-13 Score=106.15 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=83.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...++.+|||+|||+|.++..+++ +..+++|+|+++. ++.+..+|+.+ ++++++||+|+++..
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc
Confidence 346778999999999999999998 6669999999964 35678888877 677788999988532
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.++.++++++.++ |||.+++..+... ...++.+.+++.|+.
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIVLE-----------NAAKIINEFESRGYN 150 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESCHH-----------HHHHHHHHHHHTTCE
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecccc-----------cHHHHHHHHHHcCCe
Confidence 6778899999998 9999999886433 355677888888853
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-13 Score=126.19 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~-~~ 170 (257)
..+.+|||||||.|.++..|++.|. +|+|||+++. ++.+.+++++++ .+++++||+|+| .+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4567999999999999999999875 9999999965 356778888877 567789999999 69
Q ss_pred hhccccHHHH--HHHHHHhccCCcEEEEEecc-CCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCc
Q 025148 171 FDHALYPDKF--VMEIERTLKPGGVCVLHVAL-SKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLD 239 (257)
Q Consensus 171 l~h~~~~~~~--l~~~~r~LkpgG~l~i~~~~-~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~ 239 (257)
+||+.++..+ +..+.+.|+++|..++.... .+..-.+.. ....+..++.+..++.++....|..+.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p---~~~~~~~~~i~~~~~~~~~~~~g~~~~ 212 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGV---SQPDDPRELIEQCAFYRLIGEFDTHLS 212 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSSGGGG---GSCSSGGGGTTTSSEEEEEEEECCSSS
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEeccccccccccC---CCCccHHHhcCHHHHHHHHHHcCCccc
Confidence 9999988643 45677888888876654422 111000000 023445677788888888877775553
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-13 Score=119.11 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=76.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
...++.+|||||||+|.++..+++.+..+|+|+|+|+. ++.++.+|+.+++++ ++||+|+++ .
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 34578899999999999999999987779999999952 467889999988766 579999996 6
Q ss_pred hhccc--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHAL--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++|+. +..+.+.++.++|||||.+++..
T Consensus 126 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 126 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 67765 34578889999999999998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-14 Score=114.71 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC-C--CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ-P--FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~--~~~~~fD~V~~~ 169 (257)
..+.+|||||||+|.++..+++. +..+|+|+|+|+. ++.++++|+.++ + +++++||.|+++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 35789999999999999999985 5668999999965 467888888774 3 778999998765
Q ss_pred Hhh---ccccH------HHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFD---HALYP------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~---h~~~~------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.-. ..... ..+++++.++|||||.+++.+.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 211 11111 2599999999999999999884
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=109.41 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCCCeEEEECCCCCHH--HHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCC---CCCchhHHHH-HHhhcc-ccHHHH
Q 025148 108 LSNESKALCIGARVGQE--VEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPF---DDETFDFEFS-NVFDHA-LYPDKF 180 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~--~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~---~~~~fD~V~~-~~l~h~-~~~~~~ 180 (257)
+++|.+|||+|||...+ +..+.+....+ ....+.+.++|+.++++ ++++||+|+| .+++|+ .++.++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~------~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~ 83 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQAL------TGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEI 83 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHH------TTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHh------cccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHH
Confidence 57889999999997431 11111100000 01137788999998887 7899999999 599999 899999
Q ss_pred HHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 181 VMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 181 l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+++++|+|||||++++..|...... ...+.++..++.+.+.+.||..+..
T Consensus 84 l~~~~r~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~aGfi~~~~ 133 (176)
T 2ld4_A 84 LAEIARILRPGGCLFLKEPVETAVD--NNSKVKTASKLCSALTLSGLVEVKE 133 (176)
T ss_dssp HHHHHHHEEEEEEEEEEEEEESSSC--SSSSSCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCEEEEEEcccccccc--cccccCCHHHHHHHHHHCCCcEeec
Confidence 9999999999999999766432111 1122346889999999999954443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-14 Score=110.30 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=72.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 170 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++.+|+.+ ++..+++||+|+++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 3567899999999999999999886679999999965 25677777766 344456799998862
Q ss_pred hhccccHHHHHHHHH--HhccCCcEEEEEeccC
Q 025148 171 FDHALYPDKFVMEIE--RTLKPGGVCVLHVALS 201 (257)
Q Consensus 171 l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~~~ 201 (257)
..|.....+.++.+. ++|||||++++.++..
T Consensus 109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 222344567777777 9999999999988643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=107.41 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------CCcEEEecCCCCC---CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------PPLVIEGDFHRQP---FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+++. ++.++.+|+.+.. ..+++||+|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 467889999999999999999975 3 469999999973 5678888887732 123589999886
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.. +......+++++.++|||||.+++............. ..+...++..+ .+. |..+....
T Consensus 151 ~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 151 VA-QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP-EQVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp CC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH-HHHHHHHHHHH-HTT-SEEEEEEE
T ss_pred CC-CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCCh-hhhhHHHHHHH-Hhh-ceeeeEec
Confidence 33 2222334599999999999999998532211111100 12234566666 555 76655543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=9e-13 Score=109.71 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcE--------EE---ecCC-----CC---CCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLV--------IE---GDFH-----RQ---PFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~--------~~---~d~~-----~~---~~~~~~fD~V~~~ 169 (257)
..+.+|||||||+|.++..+++.+..+|+|+|+|+.++.. .. .++. ++ .++..+||+++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4567999999999999999999875699999999884322 11 0111 11 1233466766554
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEec-cCCCcCc-CC------C--CCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVA-LSKRADK-YS------A--NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~-~~~~~~~-y~------~--~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
. ..++++++|+|||||.+++.+. .....+. .. . ...++.+++..++.+.||......
T Consensus 116 l-------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 116 L-------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp G-------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred H-------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 2 5799999999999999998641 1111110 00 0 022367788899999999755543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-13 Score=111.89 Aligned_cols=130 Identities=17% Similarity=0.056 Sum_probs=91.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCC---CCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD---DETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~ 169 (257)
.++.+|||||||+|..+..++.. +..+|+|+|+|+. ++.++++|+++++.. +++||+|+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 46789999999999999999875 6679999999965 467889998877643 4789999986
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec----CCCCc-eEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD----GFGLD-TEVVF 244 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~----gf~~~-~~vv~ 244 (257)
.+ .+...+++++.++|||||++++...... . -...++.+.+...|+....... +..-. ..+++
T Consensus 159 a~---~~~~~ll~~~~~~LkpgG~l~~~~g~~~-----~----~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~ 226 (249)
T 3g89_A 159 AV---APLCVLSELLLPFLEVGGAAVAMKGPRV-----E----EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVL 226 (249)
T ss_dssp SS---CCHHHHHHHHGGGEEEEEEEEEEECSCC-----H----HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred Cc---CCHHHHHHHHHHHcCCCeEEEEEeCCCc-----H----HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEE
Confidence 43 3567899999999999999988653110 0 0233455566666765444332 22222 45566
Q ss_pred Eccccc
Q 025148 245 RKNAKS 250 (257)
Q Consensus 245 ~k~~~~ 250 (257)
+|...+
T Consensus 227 ~k~~~t 232 (249)
T 3g89_A 227 EKTAPT 232 (249)
T ss_dssp EECSCC
T ss_pred EeCCCC
Confidence 664443
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-13 Score=112.23 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchh
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD 164 (257)
+....+.++.+|||+|||+|.++..+++. + ..+|+++|+++. ++.+..+|+.+. +++++||
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEE
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccC
Confidence 33444677889999999999999999886 3 579999999864 356777887766 6677899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+|+++ .+++.++++++.++|||||.+++.++... ....+.+.+.+.+|..+....
T Consensus 184 ~V~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 184 ALFLD----VPDPWNYIDKCWEALKGGGRFATVCPTTN-----------QVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp EEEEC----CSCGGGTHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHSSEEEEEEEC
T ss_pred EEEEC----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCceeEEEE
Confidence 99874 56778899999999999999999986432 244566667778877665543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-13 Score=109.59 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=72.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
..+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.+..+|+.+....+++||+|+++ ++
T Consensus 66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 66 LDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (231)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcH
Confidence 345678899999999999999999876 69999999965 3567888887733346789999884 88
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
+|+. .++.++|||||++++.++..
T Consensus 145 ~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 145 PTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 8876 36899999999999998643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=109.05 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC----------CCcEEEecCCCC---CCCC-CchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY----------PPLVIEGDFHRQ---PFDD-ETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~----------~~~~~~~d~~~~---~~~~-~~fD~V~~~~ 170 (257)
++.+|||||||+|..+..+++. +.++|+|+|+++. ++.++++|..+. +..+ .+||+|+++.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4679999999999999999885 3569999999987 367888998874 5433 4799998754
Q ss_pred hhccccHHHHHHHHHH-hccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 171 FDHALYPDKFVMEIER-TLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r-~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
. |. +..+++.++.| +|||||++++..... .+. -+..+.+.+++++.
T Consensus 161 ~-~~-~~~~~l~~~~r~~LkpGG~lv~~d~~~--~~~-----~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 161 A-HA-NTFNIMKWAVDHLLEEGDYFIIEDMIP--YWY-----RYAPQLFSEYLGAF 207 (236)
T ss_dssp S-CS-SHHHHHHHHHHHTCCTTCEEEECSCHH--HHH-----HHCHHHHHHHHHTT
T ss_pred c-hH-hHHHHHHHHHHhhCCCCCEEEEEeCcc--ccc-----ccCHHHHHHHHHhC
Confidence 3 43 67789999997 999999999964200 000 01344667777766
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-13 Score=109.27 Aligned_cols=90 Identities=16% Similarity=0.042 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC--CCCc-hhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF--DDET-FDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~--~~~~-fD~V~~~ 169 (257)
++.+|||+|||+|.++..++..+..+|+|+|+|+. ++.++++|+.+... ++++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 56899999999999999877776669999999954 34677778766432 3678 9999986
Q ss_pred HhhccccHHHHHHHH--HHhccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEI--ERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~--~r~LkpgG~l~i~~~ 199 (257)
.-.|..+..++++++ .++|||||.+++.+.
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 333456677888888 668999999999875
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=106.60 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=83.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+.++.+|||+|||+|.++..+++. ..+|+++|+++. ++.+..+|+.+...++++||+|++
T Consensus 86 ~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 164 (248)
T 2yvl_A 86 KLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164 (248)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE
T ss_pred hcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE
Confidence 334567889999999999999999987 569999999964 346677787775436678999887
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+..++.++++++.++|||||.+++.++... ...++.+.+.+. |..+.
T Consensus 165 ----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 165 ----DVREPWHYLEKVHKSLMEGAPVGFLLPTAN-----------QVIKLLESIENY-FGNLE 211 (248)
T ss_dssp ----CSSCGGGGHHHHHHHBCTTCEEEEEESSHH-----------HHHHHHHHSTTT-EEEEE
T ss_pred ----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHhh-CCcce
Confidence 345777899999999999999999987432 234555566655 55443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=8e-13 Score=110.20 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=70.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------------CCcEEEecCCC-CC--CCCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------------PPLVIEGDFHR-QP--FDDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------------~~~~~~~d~~~-~~--~~~~~f 163 (257)
.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 45679999999999999999986 5679999999842 46788999887 56 778899
Q ss_pred hHHHHHHhh-ccc--------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 164 DFEFSNVFD-HAL--------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 164 D~V~~~~l~-h~~--------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|.|+++.-. +.. ....+++++.++|||||.+++.+..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 998653111 110 0136899999999999999998753
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-13 Score=107.84 Aligned_cols=94 Identities=15% Similarity=-0.006 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC----CCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP----FDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~----~~~~~fD~V~~ 168 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++.+|+.+.. .++++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 467899999999999999888877679999999965 2567888876632 23678999998
Q ss_pred HHhhccccHHHHHHHH--HHhccCCcEEEEEeccCC
Q 025148 169 NVFDHALYPDKFVMEI--ERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~--~r~LkpgG~l~i~~~~~~ 202 (257)
+...+..+..+.++.+ .++|||||++++.++...
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 6323345667777777 889999999999886443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=110.78 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCc
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~ 162 (257)
+....+.++.+|||+|||+|.++..+++. +..+|+++|+++. ++.+..+|+.+.++++++
T Consensus 92 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~ 171 (280)
T 1i9g_A 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 171 (280)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred HHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCc
Confidence 33444678899999999999999999985 3569999999853 356778888888887889
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
||+|++ +..++.++++++.++|||||.+++.++..
T Consensus 172 ~D~v~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 172 VDRAVL----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EEEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred eeEEEE----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 999987 45578899999999999999999998753
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=114.92 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.+..+|+.+ ++++++||+|+++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 45689999999999999999987 3679999999966 14458888877 5677899999997
Q ss_pred -Hhhccc-----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 170 -VFDHAL-----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 170 -~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
.+++.. ...++++++.++|||||.+++...... .| ...+.+.|.. ...+....||.
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~---~~-------~~~l~~~fg~--~~~~a~~~~F~ 361 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL---DY-------FHKLKKIFGN--CTTIATNNKFV 361 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS---CH-------HHHHHHHHSC--CEEEEECSSEE
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc---CH-------HHHHHHhcCC--EEEEeeCCCEE
Confidence 555421 234689999999999999999774322 11 3455666663 44455555765
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=115.19 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----H
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN----V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~----~ 170 (257)
+|++|||||||+|.++..+++.|..+|+|||.|+. .+.++.++++++.++ ++||+|+|+ .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 57899999999999999999888889999999854 478899999999887 579999985 3
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.+-.....++....|.|||||.++-.
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccchhhhHHHHHHhhCCCCceECCc
Confidence 444445677888889999999988743
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=111.33 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
.+++.+|||+|||+|.++..+++.+..+|+|+|+|+. .+.++++|+.+.+. +++||+|+++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~-- 199 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMG-- 199 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC--
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEEC--
Confidence 4678999999999999999999976547999999965 25688999988876 7789999885
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+.....++++++.++|||||++++......... .. ...+.+.+.+.+.|+..
T Consensus 200 -~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~----~~~~~i~~~~~~~G~~~ 251 (278)
T 2frn_A 200 -YVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-PR----EPFETFKRITKEYGYDV 251 (278)
T ss_dssp -CCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TT----TTHHHHHHHHHHTTCEE
T ss_pred -CchhHHHHHHHHHHHCCCCeEEEEEEeeccccc-cc----cHHHHHHHHHHHcCCee
Confidence 223446789999999999999999875432100 00 13567778888888754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-13 Score=109.55 Aligned_cols=91 Identities=9% Similarity=-0.040 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCC-CCCCCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHR-QPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|.++..++..+..+|+|+|+|+. ++.++++|+.+ ++..+++||+|+++.-.|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 56899999999999999877776569999999965 35678888776 455667899999863334
Q ss_pred cccHHHHHHHHHH--hccCCcEEEEEecc
Q 025148 174 ALYPDKFVMEIER--TLKPGGVCVLHVAL 200 (257)
Q Consensus 174 ~~~~~~~l~~~~r--~LkpgG~l~i~~~~ 200 (257)
..+..++++++.+ +|||||++++.+..
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5677788888876 59999999998753
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=107.09 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=72.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------C---------CcEEEecCCCC-------CCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------P---------PLVIEGDFHRQ-------PFDDE 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~---------~~~~~~d~~~~-------~~~~~ 161 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+++. . +.++++|+.+. +++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 56789999999999999999986 3569999999864 1 56788999887 35678
Q ss_pred chhHHHHH-Hhh------------------ccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 162 TFDFEFSN-VFD------------------HALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 162 ~fD~V~~~-~l~------------------h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+||+|++| .+. .......+++++.++|||||.+++..+.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 99999987 111 1124678899999999999999998753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=104.90 Aligned_cols=88 Identities=9% Similarity=-0.037 Sum_probs=70.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
+.+.++|||+|||+|.++..++.. +..+|+|+|+|+. ...+...|.... .+.++||+|++ +++
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH
Confidence 366889999999999999999875 5669999999976 113444555544 45678999988 699
Q ss_pred hccccHHHHHHHHHHhccCCcEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
||+.+.+..+..+.+.|||||+++-
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 9997777888899999999987654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=111.89 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecC----CCC-------------CCcEEEe-cCCCCCCCCCchh
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDL----VPY-------------PPLVIEG-DFHRQPFDDETFD 164 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~----s~~-------------~~~~~~~-d~~~~~~~~~~fD 164 (257)
..+..++++.+|||+|||+|.++..+++. ++|+|+|+ ++. .+.++++ |+.+++ +++||
T Consensus 75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp HHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred HHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCC
Confidence 33455678899999999999999999987 48999998 331 1345555 666554 56899
Q ss_pred HHHHHH-h---hccccHH---HHHHHHHHhccCCcEEEEEec
Q 025148 165 FEFSNV-F---DHALYPD---KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 165 ~V~~~~-l---~h~~~~~---~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+|+|+. . ++..+.. .++.++.++|||||.+++.+.
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999962 2 2222332 478999999999999999764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=106.46 Aligned_cols=87 Identities=23% Similarity=0.193 Sum_probs=70.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.+.++.+|||+|||+|.++..+++.. ..+|+++|+++. ++.+..+|.......+++||+|+++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 45678899999999999999998863 269999999965 3567777875433236789999884
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++|+. +++.++|||||.+++.++
T Consensus 154 ~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 154 AAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp SBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 888776 488999999999999885
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=109.01 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=94.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------------CCCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------------YPPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
+....+|||||||+|.++..+++. +..+++..|..+ .++.++.+|+.+.+.++ +|+|++ +++
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~~~~~~vl 254 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADLYILARVL 254 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSEEEEESSG
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceEEEeeeec
Confidence 356679999999999999999885 677888888631 15788999998766553 699877 699
Q ss_pred hccccH--HHHHHHHHHhccCCcEEEEEeccCCC--cC------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYP--DKFVMEIERTLKPGGVCVLHVALSKR--AD------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|+..+. .+++++++++|+|||.++|....... .. ......-++..++.++++++||..++...
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 998876 46799999999999999987542111 00 01112345889999999999999887665
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-14 Score=120.51 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.++++|+.+.+ ++++||+|+++ .++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 68899999999999999999987 69999999965 3578888888776 56789999996 888
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCC-cCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKR-ADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|..++...+.+++++|||||.+++....... ...+......+.+.+.+++...|...+....
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~ 218 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNF 218 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEE
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehh
Confidence 8888777888999999999997765421000 0001111233677888888888776666554
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=113.43 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
..+.+|||+|||+|.++..+++.+ ..+|+|+|+|+. ...+..+|..+.+ +++||+|+++ .++
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence 456799999999999999999864 459999999965 2456777876543 6789999996 665
Q ss_pred c-----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 173 H-----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 173 h-----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
+ ..+..++++++.++|||||.+++..+... . ....+.+.|.. +..+....||.
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~-------~~~~l~~~f~~--~~~~~~~~gf~ 330 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL---P-------YPDVLDETFGF--HEVIAQTGRFK 330 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS---S-------HHHHHHHHHSC--CEEEEECSSEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC---C-------cHHHHHHhcCc--eEEEeeCCCEE
Confidence 3 45678899999999999999999875322 1 13345555553 34455556776
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=112.94 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=73.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...++++.+|||||||+|.++..+++.+ .++|+|+|+|+. ++.+..+|..+.+.++++||+|+
T Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv 149 (317)
T 1dl5_A 70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (317)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred hcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEE
Confidence 3345788999999999999999998863 246999999965 36778888887655667899998
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ +++|+. +++.+.|||||++++.+..
T Consensus 150 ~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 85 888876 5788999999999998653
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-12 Score=108.73 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=83.3
Q ss_pred cCCCCCeEEEECCCC------CHHHHHHHH-cC-CCcEEEecCCCC--CCcE-EEecCCCCCCCCCchhHHHHHHhhc--
Q 025148 107 LLSNESKALCIGARV------GQEVEALKR-VG-VSDSVGIDLVPY--PPLV-IEGDFHRQPFDDETFDFEFSNVFDH-- 173 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~------G~~~~~l~~-~~-~~~v~gvD~s~~--~~~~-~~~d~~~~~~~~~~fD~V~~~~l~h-- 173 (257)
.++++.+|||+|||+ |. ..+++ .+ .++|+|+|+++. ++.+ +++|+.+.+++ ++||+|+|+...+
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~ 136 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPRT 136 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC-
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCcccc
Confidence 457889999999955 55 33444 34 469999999986 5678 99999988765 6799999863221
Q ss_pred ----------cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 174 ----------ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ----------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
....+++++++.++|||||.+++.+.... ...++...+++.||..+...
T Consensus 137 g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 137 KHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp --CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------CCHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------CHHHHHHHHHHcCCcEEEEE
Confidence 11234789999999999999999774322 24577888888888766655
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-12 Score=107.02 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch---hHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF---DFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f---D~V~~~- 169 (257)
++.+|||+|||+|.++..+++.+..+|+|+|+|+. .+.++++|+.+. ++ ++| |+|++|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcC
Confidence 56799999999999999998875569999999965 267888888763 33 479 999986
Q ss_pred -Hhh----------ccc--------cHHHHHHHHH-HhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 170 -VFD----------HAL--------YPDKFVMEIE-RTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 170 -~l~----------h~~--------~~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
.+. |-+ +...+++++. +.|+|||++++.++.. ..+.+.+++.+.
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~------------q~~~v~~~~~~~---- 264 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED------------QVEELKKIVSDT---- 264 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT------------CHHHHTTTSTTC----
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch------------HHHHHHHHHHhC----
Confidence 110 111 1236889999 9999999999987432 355677777765
Q ss_pred EEEecCCCCceEEEEEcc
Q 025148 230 VRKVDGFGLDTEVVFRKN 247 (257)
Q Consensus 230 ~~~~~gf~~~~~vv~~k~ 247 (257)
....+-.+.++.++.+++
T Consensus 265 ~~~~D~~g~~R~~~~~~k 282 (284)
T 1nv8_A 265 VFLKDSAGKYRFLLLNRR 282 (284)
T ss_dssp EEEECTTSSEEEEEEECC
T ss_pred CeecccCCCceEEEEEEc
Confidence 222333344455555443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=107.72 Aligned_cols=116 Identities=15% Similarity=-0.044 Sum_probs=88.0
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhH
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
+......++.+|||+|||+|.++..++.. +..+++|+|+++. .+.+.++|+.+++.+.+.||+
T Consensus 196 ~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~ 275 (354)
T 3tma_A 196 LRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDR 275 (354)
T ss_dssp HHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSE
T ss_pred HHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCE
Confidence 33444567889999999999999999885 3469999999965 478999999998887788999
Q ss_pred HHHH-Hhh-------c-cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 166 EFSN-VFD-------H-ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 166 V~~~-~l~-------h-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|++| -+. + .....++++++.++|||||.+++.++ +...+..+.+ .++......
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~--------------~~~~~~~~~~-~g~~~~~~~ 337 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL--------------RPALLKRALP-PGFALRHAR 337 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES--------------CHHHHHHHCC-TTEEEEEEE
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC--------------CHHHHHHHhh-cCcEEEEEE
Confidence 9986 111 1 11236788999999999999999886 2334555556 777655544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=105.63 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecC-CCC-------------------------CCcEEEecCCCC--CC--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDL-VPY-------------------------PPLVIEGDFHRQ--PF-- 158 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~-s~~-------------------------~~~~~~~d~~~~--~~-- 158 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+ ++. ++.+...+..+. .+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 567899999999999999999877569999999 654 122332332221 11
Q ss_pred --CCCchhHHHH-HHhhccccHHHHHHHHHHhcc---C--CcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC-cEE
Q 025148 159 --DDETFDFEFS-NVFDHALYPDKFVMEIERTLK---P--GGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE-MVR 229 (257)
Q Consensus 159 --~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~Lk---p--gG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~-~~~ 229 (257)
++++||+|++ ++++|..+...+++++.++|| | ||.+++........ .......+...+.+.| |..
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~------~~~~~~~~~~~l~~~G~f~v 231 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH------LAERDLAFFRLVNADGALIA 231 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------CTHHHHHHHHSTTEEE
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc------cchhHHHHHHHHHhcCCEEE
Confidence 3578999988 799999999999999999999 9 99987764321100 0012345666677778 654
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 232 ~~~ 234 (281)
T 3bzb_A 232 EPW 234 (281)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-12 Score=107.26 Aligned_cols=89 Identities=9% Similarity=0.061 Sum_probs=68.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC-----------C-----------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY-----------P----------------------------- 145 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~-----------~----------------------------- 145 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. .
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35679999999999999999875 3458999999965 2
Q ss_pred ----Cc-------------EEEecCCCCCC-----CCCchhHHHHH-Hhhcc---------ccHHHHHHHHHHhccCCcE
Q 025148 146 ----PL-------------VIEGDFHRQPF-----DDETFDFEFSN-VFDHA---------LYPDKFVMEIERTLKPGGV 193 (257)
Q Consensus 146 ----~~-------------~~~~d~~~~~~-----~~~~fD~V~~~-~l~h~---------~~~~~~l~~~~r~LkpgG~ 193 (257)
+. +.++|+.+... .+++||+|+|+ .+.+. .....+++++.++|||||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 34 78888876421 34589999996 33332 3355889999999999999
Q ss_pred EEEE
Q 025148 194 CVLH 197 (257)
Q Consensus 194 l~i~ 197 (257)
+++.
T Consensus 210 l~~~ 213 (250)
T 1o9g_A 210 IAVT 213 (250)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9993
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-12 Score=116.37 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC---------------CCCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP---------------YPPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---------------~~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ .++.++.+|+.+++++ ++||+|+|+ .+
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 456789999999999999999988777999999986 2467899999987765 479999997 55
Q ss_pred hccc--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHAL--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+. +..+.+.++.++|||||.+++..
T Consensus 235 ~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 235 YMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 6664 33567788899999999998643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-12 Score=113.13 Aligned_cols=97 Identities=16% Similarity=0.053 Sum_probs=72.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEGDFHRQ 156 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~d~~~~ 156 (257)
++....+.++.+|||||||+|.++..+++. +..+|+|+|+++. ++.++.+|....
T Consensus 234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~ 313 (433)
T 1u2z_A 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 313 (433)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc
Confidence 333344578899999999999999999985 6568999999864 234455543322
Q ss_pred --CC--CCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 157 --PF--DDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 157 --~~--~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ ..++||+|+++ ++ +..+..++++++.++|||||.+++..+
T Consensus 314 ~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 314 NNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp CHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 22 24689999885 54 557788899999999999999998743
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-12 Score=105.97 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=69.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCC-chhHHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDE-TFDFEFSN- 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~-~fD~V~~~- 169 (257)
.+.++.+|||+|||+|.++..+++....+|+++|+++. ++.+..+|. ..+++++ .||+|+++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC
Confidence 45678899999999999999999863269999999965 356777776 3445444 49999884
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
+++++. +++.+.|||||++++.++..
T Consensus 167 ~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 167 GAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp BBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred cHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 777665 37889999999999998643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-12 Score=105.29 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC-----------------------CCcEEEecCCC-CC--CCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY-----------------------PPLVIEGDFHR-QP--FDD 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~-----------------------~~~~~~~d~~~-~~--~~~ 160 (257)
+.++.+|||||||+|.++..+++.+ ..+|+|+|+|+. ++.++.+|+.+ ++ +++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 3567899999999999999999864 568999999842 45678888876 45 667
Q ss_pred CchhHHHHHHhhccccH-------------HHHHHHHHHhccCCcEEEEEec
Q 025148 161 ETFDFEFSNVFDHALYP-------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~-------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++|.|+. +++++ .++++++.++|||||.+++.+.
T Consensus 127 ~~~d~v~~----~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 127 GQLSKMFF----CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp TCEEEEEE----ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCEEEE----ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 78887753 23333 4799999999999999999764
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-12 Score=109.81 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=70.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------------------CCcEEEecCCCC-
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------------------PPLVIEGDFHRQ- 156 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------------------~~~~~~~d~~~~- 156 (257)
..+.++.+|||+|||+|.++..+++. + ..+|+|+|+++. ++.+..+|+.+.
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 34678899999999999999999985 4 369999999862 467788898876
Q ss_pred -CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 157 -PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 157 -~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++++++||+|+++. .++..+++++.++|||||.+++..+.
T Consensus 181 ~~~~~~~fD~V~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 181 EDIKSLTFDAVALDM----LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp -------EEEEEECS----SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred cccCCCCeeEEEECC----CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 56677899998853 34556899999999999999998764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.1e-13 Score=104.33 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC-C-C--CCCchhHHHHH-H
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ-P-F--DDETFDFEFSN-V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~-~-~--~~~~fD~V~~~-~ 170 (257)
++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+. + . .+++||+|+++ .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 678999999999999999998765 5999999976 367777777653 2 1 13479999986 4
Q ss_pred hhccccHHHHHHHHH--HhccCCcEEEEEeccCC
Q 025148 171 FDHALYPDKFVMEIE--RTLKPGGVCVLHVALSK 202 (257)
Q Consensus 171 l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~~~~ 202 (257)
++ .+..++++.+. ++|||||.+++.++...
T Consensus 120 ~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 120 YA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 43 55667777777 99999999999886443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.6e-12 Score=104.65 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCC-CC-----CCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FD-----DETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~-----~~~fD~ 165 (257)
++.+|||||||+|..+..+++. ..++|+++|+++. ++.++.+|+.+.. .. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 5679999999999999999984 2579999999986 3567777776542 11 478999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++.- ..+...+++++.++|||||++++...
T Consensus 140 V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 140 IFIDAD--KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEESC--GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEcCC--hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 987522 34566789999999999999999653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-12 Score=109.13 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCCCC--CCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQPF--DDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~--~~~~fD~V 166 (257)
.++.+|||||||+|.++..+++. +..+|+++|+++. ++.++.+|+.+... ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999986 4569999999954 35677788776543 47889999
Q ss_pred HHHHhhccc-cH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 167 FSNVFDHAL-YP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 167 ~~~~l~h~~-~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++...+.. .. .+++++++++|||||++++...... + .......+.+.+++.||..+...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~----~---~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW----L---DLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT----T---CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc----c---chHHHHHHHHHHHhCCCCcEEEE
Confidence 986433322 11 5789999999999999999864321 0 01135667777888888655443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-12 Score=105.46 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCC-CCC-C----CCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHR-QPF-D----DETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~-~----~~~fD~ 165 (257)
++.+|||||||+|..+..+++. ..++|+++|+++. .+.++.+|+.+ ++. . .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 5689999999999999999984 3569999999975 36778888754 222 2 268999
Q ss_pred HHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++ ..++..+..++++.+ ++|||||++++...
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9885 566666667788888 99999999998643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-12 Score=104.88 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-----------------CCcEEEecCCCC-
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-----------------PPLVIEGDFHRQ- 156 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-----------------~~~~~~~d~~~~- 156 (257)
.++..+......+++.+|||||||+|..+..+++. +.++|+++|+++. ++.++.+|+.+.
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 34444433332334559999999999999999884 3579999999965 256677776554
Q ss_pred -CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 157 -PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 157 -~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+++++||+|+++. ...+...+++++.+.|||||++++..
T Consensus 123 ~~~~~~~fD~V~~d~--~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 123 SRLANDSYQLVFGQV--SPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp GGSCTTCEEEEEECC--CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred HHhcCCCcCeEEEcC--cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 23468899998752 12345678999999999999999854
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-12 Score=105.31 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCC-CCCC--CCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHR-QPFD--DETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~--~~~fD~V~ 167 (257)
.++.+|||||||+|..+..+++. + .++|+|+|+++. ++.+..+|+.+ ++.. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35789999999999999999985 3 579999999965 36778888765 2322 34899998
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++. ...+...+++++.++|||||++++...
T Consensus 142 ~d~--~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDA--DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECS--CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECC--chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 742 234556789999999999999998754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=102.72 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=80.6
Q ss_pred CeEEEECCCC--CHHHHHHHH--cCCCcEEEecCCCC---------------CCcEEEecCCCCCC----C--CCchh--
Q 025148 112 SKALCIGARV--GQEVEALKR--VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF----D--DETFD-- 164 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~----~--~~~fD-- 164 (257)
.++||||||. +..+..+++ .+.++|+++|.|+. ++.++++|+.+.+. + .++||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 6899999997 334444443 36779999999965 25788999987521 1 34566
Q ss_pred ---HHHHH-Hhhcccc---HHHHHHHHHHhccCCcEEEEEeccCCCc--------CcC----CCCCcCChhHHHHhcccC
Q 025148 165 ---FEFSN-VFDHALY---PDKFVMEIERTLKPGGVCVLHVALSKRA--------DKY----SANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 165 ---~V~~~-~l~h~~~---~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~y----~~~~~~~~~~~~~~f~~~ 225 (257)
.|+++ +|||+.+ +..+++++.+.|+|||+|+++....+.. ..| ....+++.+++..+|.
T Consensus 160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~-- 237 (277)
T 3giw_A 160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE-- 237 (277)
T ss_dssp SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT--
T ss_pred CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC--
Confidence 35664 9999987 5789999999999999999986432210 000 0124568899999995
Q ss_pred CcE
Q 025148 226 EMV 228 (257)
Q Consensus 226 ~~~ 228 (257)
||.
T Consensus 238 Gle 240 (277)
T 3giw_A 238 GLE 240 (277)
T ss_dssp TSE
T ss_pred CCc
Confidence 554
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-12 Score=105.03 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC-C-CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~~~~~fD~V~~~ 169 (257)
.++.+|||||||+|..+..+++. +..+|+|+|+++. ++.++.+|+.+. + ..+++||+|+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 35789999999999999999984 3569999999964 467888988764 3 336789999875
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ...+...+++++.+.|||||++++..
T Consensus 150 ~--~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 150 A--AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T--TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred C--cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 23456679999999999999998854
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-11 Score=106.08 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=81.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. ++.++++|+.+++..+++||+|+++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 567889999999999999999985 3469999999966 3577888888776556789998763
Q ss_pred ------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 ------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 ------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
++.+.++ ..++++++.++|||||+++++++.... -.....+..++++.++
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~--------~Ene~~v~~~l~~~~~ 267 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--------EENEFVIQWALDNFDV 267 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--------GGTHHHHHHHHHHSSE
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh--------HHhHHHHHHHHhcCCC
Confidence 2322221 257889999999999999998863211 0123345566666665
Q ss_pred EE
Q 025148 228 VR 229 (257)
Q Consensus 228 ~~ 229 (257)
..
T Consensus 268 ~~ 269 (315)
T 1ixk_A 268 EL 269 (315)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-11 Score=99.42 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 170 (257)
++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++.+|..+. +..++ ||+|+++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 5679999999999999999985 3 569999999965 256778887653 44456 99998762
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+...+++++.++|||||++++..
T Consensus 135 --~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 --DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp --TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred --ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 23466789999999999999999864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-11 Score=101.43 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=70.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ++.+..+|....+..+++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 567889999999999999999885 3 359999999864 356778888766656778999
Q ss_pred HHHH-HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 166 V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+++ .++++ ++++.++|||||++++.++.
T Consensus 155 i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence 9885 66544 46889999999999998853
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=99.64 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=87.9
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...++++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.+..+|..+...+++.||+|+
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 16 ANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred HHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEE
Confidence 4456788999999999999999999975 458999999966 36788999887765555799864
Q ss_pred -HHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 168 -SNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 168 -~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++..- .-..+++.+..+.|+++|.++++-- . ....+++++.+.||....+.
T Consensus 96 iaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~-~------------~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 96 ICGMGG--RLIADILNNDIDKLQHVKTLVLQPN-N------------REDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCCEEEEEES-S------------CHHHHHHHHHHTTEEEEEEE
T ss_pred EeCCch--HHHHHHHHHHHHHhCcCCEEEEECC-C------------ChHHHHHHHHHCCCEEEEEE
Confidence 44211 0122678888899999999998752 1 47789999999999776655
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-11 Score=99.77 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=70.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC------CCcEEEecCCCC--------------------CCcEEEecCCCCC---
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG------VSDSVGIDLVPY--------------------PPLVIEGDFHRQP--- 157 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~--------------------~~~~~~~d~~~~~--- 157 (257)
.+.++.+|||||||+|.++..+++.. ..+|+|+|+++. ++.+..+|..+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 35678899999999999999998863 259999999854 3567888887755
Q ss_pred -CCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 158 -FDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 158 -~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+++||+|+++ .++|+ ++++.+.|||||++++.++
T Consensus 157 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 556789999885 66654 4788999999999999886
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=99.89 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C-CCC----CchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-FDD----ETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~~~----~~fD~ 165 (257)
++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++++|..+. + +.+ ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5679999999999999999985 3 579999999965 366788887543 1 111 78999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++. ...+...+++++.++|||||++++...
T Consensus 144 v~~~~--~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 144 IYIDA--DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEECS--CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEECC--CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98642 133567899999999999999999754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-11 Score=106.99 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHHHHhhc
Q 025148 112 SKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFSNVFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~l~h 173 (257)
.+|||||||+|.++..+++ .+..+|+++|+++. ++.++.+|..+. .+++++||+|+++...+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999998 56669999999965 356778887664 34568899999875444
Q ss_pred cc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 174 AL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 174 ~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.. ...+++++++++|||||++++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 126899999999999999999874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-11 Score=95.81 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=64.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~ 176 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++++|+.+++ ++||+|+++ .++|..+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 4567899999999999999999876557999999965 4788999998865 689999996 6777653
Q ss_pred --HHHHHHHHHHhccCCcEEEE
Q 025148 177 --PDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 177 --~~~~l~~~~r~LkpgG~l~i 196 (257)
..++++++.+.+ |+++++
T Consensus 126 ~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEE
T ss_pred chhHHHHHHHHHhc--CcEEEE
Confidence 346889999998 443333
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=103.38 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|.++..++..+. ++|+|+|+|+. .+.+.++|+.++++++++||+|++|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 57788999999999999999998753 48999999965 4688999999999888899999996
Q ss_pred Hh-------hcccc-HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VF-------DHALY-PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l-------~h~~~-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.+ +++.+ ..++++++.++| ||.+++.++ +...+.+.+.+.|+......
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------~~~~~~~~~~~~G~~~~~~~ 350 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------EKKAIEEAIAENGFEIIHHR 350 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------CHHHHHHHHHHcCCEEEEEE
Confidence 21 11222 256788999999 566555554 46778888888888765543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=102.11 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC-CCC--CCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFD--DETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~--~~~fD~V~~ 168 (257)
.++.+|||+|||+|..+..+++. +..+|+++|+++. .+.+..+|+.+. +.. +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 35789999999999999999986 3569999999965 356777777764 322 578999988
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+... .+..++++++.++|||||++++..
T Consensus 133 ~~~~--~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAK--GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGG--SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCH--HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 5322 267789999999999999999974
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-11 Score=104.24 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCC----CCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPF----DDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~----~~~~fD~V 166 (257)
..++.+|||+|||+|..+..+++. +..+|+|+|+++. ++.++.+|+.+.+. .+++||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 467889999999999999999884 4369999999965 35677788776654 26789998
Q ss_pred HHH-------Hhh------------ccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN-------VFD------------HALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~-------~l~------------h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ ++. +.....++++++.+.|||||.++++++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 775 111 1235578899999999999999998864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.8e-11 Score=99.05 Aligned_cols=110 Identities=10% Similarity=-0.007 Sum_probs=86.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...+.++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.+..+|..+...++++||+|+
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEE
Confidence 4556788999999999999999999975 458999999976 36788899887655444699865
Q ss_pred -HH----HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 168 -SN----VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 168 -~~----~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++ ++. +++.+..+.|+++|+++++-- . ....+++++.+.||....+.
T Consensus 96 iagmGg~lI~------~IL~~~~~~L~~~~~lIlq~~-~------------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 96 IAGMGGTLIR------TILEEGAAKLAGVTKLILQPN-I------------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp EEEECHHHHH------HHHHHTGGGGTTCCEEEEEES-S------------CHHHHHHHHHHHTEEEEEEE
T ss_pred EeCCchHHHH------HHHHHHHHHhCCCCEEEEEcC-C------------ChHHHHHHHHHCCCEEEEEE
Confidence 43 343 678888999999999999752 1 47789999999998764443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.3e-11 Score=97.80 Aligned_cols=113 Identities=11% Similarity=-0.028 Sum_probs=84.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCchhHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V 166 (257)
...+.++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.+..+|..+ ++. ++.||+|
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~I 88 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVI 88 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEE
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEE
Confidence 4456788899999999999999999974 568999999966 35788888754 332 2269986
Q ss_pred HH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 167 FS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 167 ~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+. +.-. .-..+++.+..+.|+++|+++++-- . ....+++++.+.||....+.
T Consensus 89 viaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~-~------------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 89 TIAGMGG--RLIARILEEGLGKLANVERLILQPN-N------------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EEEEECH--HHHHHHHHHTGGGCTTCCEEEEEES-S------------CHHHHHHHHHHTTEEEEEEE
T ss_pred EEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECC-C------------CHHHHHHHHHHCCCEEEEEE
Confidence 54 3111 0123788899999999999999652 1 47789999999999776654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-11 Score=103.00 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=73.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
.+.++.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++.+|+.+.+. +++||+|+++.
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence 3578899999999999999999986 4569999999964 45788999988743 67899998862
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
-. +..+++.++.+.|||||+++++..
T Consensus 195 p~---~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 195 VH---KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp CS---SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cc---cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 11 566789999999999999998864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-11 Score=106.01 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999987 5679999999854 34567777654 233457899999
Q ss_pred HHHhhc-cc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDH-AL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h-~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++..++ .. ...++++++.++|||||++++.+.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 874443 22 236889999999999999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-11 Score=105.22 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=71.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45689999999999999999987 5679999999854 34667777665 233457899999
Q ss_pred HHHhhcccc-----HHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHALY-----PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++...+... ..+++++++++|||||++++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 975544321 26899999999999999999863
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-11 Score=98.97 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C------CCcEEEecCCCC--------------------CCcEEEecCCCCCCCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G------VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~------~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~ 160 (257)
+.++.+|||+|||+|.++..+++. + ..+|+++|+++. ++.+..+|..+ ++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCc
Confidence 567889999999999999999884 3 258999999964 35677888776 4444
Q ss_pred -CchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 161 -ETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 161 -~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++||+|+++ .++|+. +++.+.|||||++++.+.
T Consensus 161 ~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 789999884 777654 788999999999999885
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-11 Score=99.90 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC--CCC---CCchhH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFD---DETFDF 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~---~~~fD~ 165 (257)
.++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|+.+. .++ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 35789999999999999999986 3 569999999965 356778887543 111 257999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++.. ..+...+++++.++|||||++++...
T Consensus 137 v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDAD--KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSC--GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCC--cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 987522 23456889999999999999988754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-11 Score=107.02 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC----CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF----DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~----~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++.+. +|+++|+|+. .+.++++|+.+... .+++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999998766 9999999965 15677777766421 156899998
Q ss_pred HH--H---------hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--V---------FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~---------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ . +++..+..++++++.++|||||++++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 85 1 22344667899999999999999887764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-11 Score=103.40 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~V 166 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+. ..++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 56689999999999999999986 4569999999854 356677777653 2346789999
Q ss_pred HHHHhhcc---c--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHA---L--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~---~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++..++. . ...++++++.++|||||++++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 98643211 1 14689999999999999999975
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.8e-10 Score=90.75 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++++|+.+++ ++||+|+++ .++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3567899999999999999999886668999999965 3567888888864 479999997 444
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+.. ...++++++.+++ ||.+++.++... +...+.+.+.+.|+.
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~-----------~~~~~~~~l~~~g~~ 168 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHLAKPE-----------VRRFIEKFSWEHGFV 168 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEECCHH-----------HHHHHHHHHHHTTEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEeCCcC-----------CHHHHHHHHHHCCCe
Confidence 332 3356888999988 665555432211 234456677777764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-10 Score=99.24 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCC------CcEEEecCCCCCCCCCchhHHHHH--H--hhc---
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYP------PLVIEGDFHRQPFDDETFDFEFSN--V--FDH--- 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~------~~~~~~d~~~~~~~~~~fD~V~~~--~--l~h--- 173 (257)
.++.+|||+|||+|.++..+++. +..+++|+|+++.. +.+.++|+.+... +++||+|++| . ...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~ 116 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASK 116 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc-cCCCCEEEECcCccCcccccc
Confidence 35679999999999999999875 45699999999874 4577888887653 4689999986 1 111
Q ss_pred ----ccc-------------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 174 ----ALY-------------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 174 ----~~~-------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
+.+ ...+++.+.+.|||||.+++.+|...... . ....+++.+.+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~---~----~~~~lr~~l~~~~~~~i 189 (421)
T 2ih2_A 117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL---E----DFALLREFLAREGKTSV 189 (421)
T ss_dssp CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC---G----GGHHHHHHHHHHSEEEE
T ss_pred cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC---c----cHHHHHHHHHhcCCeEE
Confidence 111 12568899999999999999998532111 1 24567777766665444
Q ss_pred EE
Q 025148 231 RK 232 (257)
Q Consensus 231 ~~ 232 (257)
..
T Consensus 190 ~~ 191 (421)
T 2ih2_A 190 YY 191 (421)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-11 Score=105.87 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
..+.+|||||||+|.++..+++. +..+|+++|+++. ++.++.+|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999986 5679999999854 245667776542 22357899999
Q ss_pred HHHhhccc---c--HHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHAL---Y--PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~---~--~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++..++.. . ..++++++.++|||||++++...
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 87443321 1 16899999999999999999864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-11 Score=99.08 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.+|||||||+|..+..+++.+ .+|+++|+++. ++.++.+|..+.. ++||+|+++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 456799999999999999888776 79999999854 2345566665543 689999886
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+|..+++++.+.|||||++++...
T Consensus 147 ----~~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 147 ----QEPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp ----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence 34566799999999999999999753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-11 Score=105.42 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCC-CCCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHR-QPFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~-~~~~~~~fD~V 166 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999986 4569999999854 24566777665 23346789999
Q ss_pred HHHHhhcc---cc-----HHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHA---LY-----PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~---~~-----~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++...|. .. ..+++++++++|||||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99755544 11 3689999999999999999975
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=103.78 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCC--CCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQP--FDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.+..+|..+.+ +++++||+|+++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 467889999999999999999986 3469999999987 3577888888775 566789998742
Q ss_pred ------HhhccccH----------------HHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHALYP----------------DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+.++. .++++++.+.|||||+++++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 44443332 47789999999999999998863
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-11 Score=100.80 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C-C-----CCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-----DDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 163 (257)
.++.+|||||||+|..+..+++. + .++|+++|+++. ++.++.+|..+. + + ++++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 35679999999999999999885 3 579999999976 245777877653 2 2 25789
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+++.- ..+...+++++.++|||||++++..
T Consensus 158 D~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC--STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99987521 2356789999999999999999864
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-10 Score=100.35 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=69.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC---------------CCcEEEecCCC-CCC-CCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY---------------PPLVIEGDFHR-QPF-DDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~---------------~~~~~~~d~~~-~~~-~~~~fD~V~~~~ 170 (257)
.++.+|||+| |+|.++..++..+. .+|+|+|+++. ++.++.+|+.+ ++. .+++||+|+++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 3578999999 99999999988753 69999999965 36788999988 653 356899999862
Q ss_pred hhccccHHHHHHHHHHhccCCc-EEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGG-VCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG-~l~i~~~ 199 (257)
..+.....++++++.++||||| .+++++.
T Consensus 250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLEAIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 1122235788999999999999 4466653
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-11 Score=105.54 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+. +..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45689999999999999999886 4579999999854 234566665542 23467899999
Q ss_pred HHHhhccccH-----HHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYP-----DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~-----~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++..++.... .++++++.++|||||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8755544321 578999999999999999976
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-11 Score=102.28 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 56689999999999999999986 4569999999854 24567777654 233467899999
Q ss_pred HHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++...+.. ...++++++.++|||||++++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 87444332 234689999999999999999763
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-11 Score=102.18 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=70.0
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC-CchhHHHHH--
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD-ETFDFEFSN-- 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~-~~fD~V~~~-- 169 (257)
..+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++ ++| .|++|
T Consensus 25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P 102 (245)
T 1yub_A 25 LNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIP 102 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECC
T ss_pred cCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCC
Confidence 335678899999999999999999876 69999999976 2457788888888764 678 44433
Q ss_pred ----------HhhccccHHHHH----HHHHHhccCCcEEEEEec
Q 025148 170 ----------VFDHALYPDKFV----MEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ----------~l~h~~~~~~~l----~~~~r~LkpgG~l~i~~~ 199 (257)
+++|.......+ +.+.|+|||||.+.+.+.
T Consensus 103 y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 103 YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 344444455556 779999999999887653
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-10 Score=100.16 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
..++....+.++.+|||||||+|.++..+++.+. +|+|+|+++. ++.++.+|+.+.+++ +|
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~f 94 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FF 94 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CC
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hh
Confidence 3344444456788999999999999999998764 9999999964 356888999887765 69
Q ss_pred hHHHHH------------HhhccccHHHHH----HHH--HHhccCCcEEE
Q 025148 164 DFEFSN------------VFDHALYPDKFV----MEI--ERTLKPGGVCV 195 (257)
Q Consensus 164 D~V~~~------------~l~h~~~~~~~l----~~~--~r~LkpgG~l~ 195 (257)
|+|++| +++|..+...++ +|+ +++|||||.++
T Consensus 95 D~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 95 DTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 998774 344444332211 333 46999999763
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.8e-11 Score=97.94 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C------------
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P------------ 157 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~------------ 157 (257)
.++.+|||||||+|..+..+++. + ..+|+++|+++. .+.+..+|..+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 35789999999999999999986 3 569999999965 256677776542 1
Q ss_pred --CCC--CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 158 --FDD--ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 158 --~~~--~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++ ++||+|+++. ...+...+++++.++|||||++++...
T Consensus 139 ~~f~~~~~~fD~I~~~~--~~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDA--DKENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTTCCSTTCEEEEEECS--CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccccCCCCCcCEEEEeC--CHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 233 7899998751 123455889999999999999999753
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-10 Score=103.63 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CC-CcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GV-SDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|..+..+++. +. ++|+|+|+++. ++.+.++|..+.+ +++++||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567889999999999999999885 33 69999999965 4567788888775 55578999874
Q ss_pred H-------HhhccccH----------------HHHHHHHHHhccCCcEEEEEecc
Q 025148 169 N-------VFDHALYP----------------DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 169 ~-------~l~h~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+ ++.+.++. .++++++.+.|||||.++++++.
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2 44433332 56899999999999999998864
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-10 Score=98.77 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-C-----CcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-V-----SDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~-----~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
.++.+|||+|||+|.++..+++.. . .+++|+|+++. .+.+.++|.... ..+++||+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEE
Confidence 456799999999999998887642 1 58999999976 357788887663 34578999999
Q ss_pred H-HhhccccH------------------HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 169 N-VFDHALYP------------------DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 169 ~-~l~h~~~~------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
| .+.++... ..+++++.+.|||||++++.+|..- +... ....+++++.+.++..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~----~~~~---~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM----FGTS---DFAKVDKFIKKNGHIE 280 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG----GGST---THHHHHHHHHHHEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchh----cCCc---hHHHHHHHHHhCCeEE
Confidence 7 54444322 2578999999999999999997541 1110 3567777777776643
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-10 Score=99.80 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
..++.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+. +..+++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 346689999999999999999886 4579999999854 235667776543 2235789999
Q ss_pred HHHHhhccc---c--HHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHAL---Y--PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~---~--~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++...+.. . ..+++++++++|||||++++...
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 886433322 1 16899999999999999999864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.1e-11 Score=97.60 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCC----CCCCC--CchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHR----QPFDD--ETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~----~~~~~--~~fD~ 165 (257)
++.+|||||||+|..+..+++. + .++|+++|+++. .+.+..+|..+ ++.++ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 5679999999999999999985 3 569999999975 25667777543 22333 78999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++.- ..+...+++++.++|||||++++...
T Consensus 152 V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 152 IFIDAD--KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEECSC--GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEECCC--HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 987521 24567899999999999999999753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.4e-10 Score=92.51 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
....+|||||||.|.++..+. +..+++|+|+++. +..+..+|....+.++ ++|+|++. +++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHH
Confidence 567899999999999998877 6679999999976 3456778888777665 89999885 7887
Q ss_pred cccHH-HHHHHHHHhccCCcEEEEEec
Q 025148 174 ALYPD-KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 174 ~~~~~-~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++.+ ...-++...|+++|++ ++.|
T Consensus 181 LE~q~~~~~~~ll~aL~~~~vv-VsfP 206 (253)
T 3frh_A 181 LEREQAGSAMALLQSLNTPRMA-VSFP 206 (253)
T ss_dssp HHHHSTTHHHHHHHHCBCSEEE-EEEE
T ss_pred hhhhchhhHHHHHHHhcCCCEE-EEcC
Confidence 76332 2334888899998654 5555
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-11 Score=105.24 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=74.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCC----CCCchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPF----DDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~----~~~~fD~V~ 167 (257)
.+++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+... ++++||+|+
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 3478899999999999999999876669999999965 35677888766421 256899988
Q ss_pred HH----------HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN----------VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~----------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ +.++..+..+++.++.+.|||||.+++.++.
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 74 3344456778999999999999999988764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.9e-11 Score=96.63 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC--CCCC----Cchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDD----ETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~----~~fD 164 (257)
.++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++.+|+.+. .+.+ ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 46789999999999999999985 3 569999999975 356677776543 1211 6799
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+++.- ..+...+++++.+.|||||++++..
T Consensus 148 ~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD--KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC--STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC--HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9988521 2345688999999999999999864
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-10 Score=104.30 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHH--
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSN-- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-- 169 (257)
++.+|||+|||+|..+..+++. +.+.|+|+|+++. ++.++++|..+++. .+++||.|+++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7899999999999999999985 3469999999966 45677888877653 45789998763
Q ss_pred -----Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -----VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -----~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+.++ ..++++++.++|||||+++++++.
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3332221 246789999999999999999864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-10 Score=99.74 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------CCcEEEecCCCC-CCCCCc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------PPLVIEGDFHRQ-PFDDET 162 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------~~~~~~~d~~~~-~~~~~~ 162 (257)
..+.+|||||||+|..+..+++.+..+|+++|+++. ++.++.+|..+. +. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 456899999999999999998876679999999854 234555665432 22 568
Q ss_pred hhHHHHHHhhcccc-----HHHHHHHHHHhccCCcEEEEEec
Q 025148 163 FDFEFSNVFDHALY-----PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 163 fD~V~~~~l~h~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+|+++...+... ..++++++.++|||||++++...
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99999875433321 26789999999999999999753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-10 Score=96.85 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=80.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
..++|.+|||+|||+|.++..++..+.++|+++|+|+. .+.++++|..+++. .+.||.|+++.
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~ 200 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY 200 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECC
Confidence 35789999999999999999999888779999999976 35778889888753 56799987762
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
. ....+++..+.+.||+||++.+..-..... ... ...+.+.+...+.|+.
T Consensus 201 p---~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-~~~----~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 201 V---VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-MPR----EPFETFKRITKEYGYD 250 (278)
T ss_dssp C---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-TTT----TTHHHHHHHHHHTTCE
T ss_pred C---CcHHHHHHHHHHHcCCCCEEEEEeeecccc-cch----hHHHHHHHHHHHcCCc
Confidence 2 223467888889999999987764221110 010 1234556666666653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-10 Score=96.66 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C-C-----CCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-----DDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 163 (257)
.++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|..+. + + ++++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35679999999999999999885 3 579999999965 256777777653 2 2 25789
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+++.- ..+...+++++.+.|||||++++..
T Consensus 149 D~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99987521 2345688999999999999999875
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-10 Score=105.31 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------CCcEEEecCCCCC-CCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------PPLVIEGDFHRQP-FDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------~~~~~~~d~~~~~-~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.++++|..+++ ..+++||+|+++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 467899999999999999999975 3369999999976 2566777776654 346789998742
Q ss_pred ------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+-++ ..++++++.++|||||+++.+++.
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3332222 267889999999999999998864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=90.70 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC---CCC---CCchhHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ---PFD---DETFDFE 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~---~~~---~~~fD~V 166 (257)
++.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5679999999999999888875 3469999999965 267888887652 444 3689999
Q ss_pred HHH-Hhhccc--------------cH-HHHHHHHHHhccCCcEEEEEeccC--------CCcCcCC-CCCcCChhHHHHh
Q 025148 167 FSN-VFDHAL--------------YP-DKFVMEIERTLKPGGVCVLHVALS--------KRADKYS-ANDLFSVKPLVKL 221 (257)
Q Consensus 167 ~~~-~l~h~~--------------~~-~~~l~~~~r~LkpgG~l~i~~~~~--------~~~~~y~-~~~~~~~~~~~~~ 221 (257)
+++ .+.+.. .+ ..++.+++++|||||.+.+..... ...+.+. .........+.++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 224 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE 224 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence 987 222211 11 234567777777777665432100 0000000 0011234678889
Q ss_pred cccCCcEEEEEe
Q 025148 222 FKRSEMVRVRKV 233 (257)
Q Consensus 222 f~~~~~~~~~~~ 233 (257)
+++.||..+...
T Consensus 225 l~~~Gf~~v~~~ 236 (254)
T 2h00_A 225 LRIQGVPKVTYT 236 (254)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHHcCCCceEEE
Confidence 999998765543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-10 Score=109.78 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-CCCCCchhHHHHH--
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-PFDDETFDFEFSN-- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~~~~~~fD~V~~~-- 169 (257)
++.+|||+|||+|.++..++..+..+|+++|+|+. ++.++++|+.+. +..+++||+|+++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 67899999999999999999877667999999965 256788887763 4446789999875
Q ss_pred H----------hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 V----------FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ~----------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. +++..+..++++++.++|||||++++++..
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2 234456778899999999999999988753
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=90.40 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=69.7
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHH
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
++..+..++++.+|||+|||+|.++..+++. +...+.|+|+... ++.....++....+++++||+|
T Consensus 65 ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlV 144 (277)
T 3evf_A 65 WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTL 144 (277)
T ss_dssp HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEE
Confidence 3334556788899999999999999998875 5556777776622 1223455555556778899999
Q ss_pred HHHHhhc----cccHH---HHHHHHHHhccCC-cEEEEEec
Q 025148 167 FSNVFDH----ALYPD---KFVMEIERTLKPG-GVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h----~~~~~---~~l~~~~r~Lkpg-G~l~i~~~ 199 (257)
+|+...+ ..|.. .+++.+.++|||| |.+++-+.
T Consensus 145 lsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 145 LCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred EecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 9974333 11221 2468889999999 99999774
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.3e-10 Score=98.95 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=69.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC-CCCCCchhHHHHH--
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ-PFDDETFDFEFSN-- 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~-~~~~~~fD~V~~~-- 169 (257)
..+++.+|||+|||+|.++..+++.+. +|+|+|+|+. ...+.++|+.+. +...+.||+|+++
T Consensus 211 ~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 211 MVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred HhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 345689999999999999999999765 5999999976 234667777654 1113349999875
Q ss_pred H--------hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 V--------FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ~--------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. .....+..++++.+.++|||||.+++.++.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 122335567889999999999999977653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-10 Score=102.86 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
..++.+|||+|||+|..+..+++. +.+.|+++|+++. ++.+.++|..+++ ..+++||.|+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 467899999999999999999875 3469999999976 3556677776653 235789998753
Q ss_pred -------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+-+ ...++++++.+.|||||.++.+++.
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 222211 1236789999999999999998874
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-10 Score=99.76 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=69.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-C-C--CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-P-F--DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~-~--~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+. + . ..++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 567899999999999999999876568999999986 245778887653 2 1 245899998
Q ss_pred HH--Hh----hccc----cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN--VF----DHAL----YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~--~l----~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ .+ .+.. +..++++++.+.|+|||++++++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 74 21 2333 3445778889999999999998753
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-10 Score=102.36 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC----CCCchhHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF----DDETFDFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~----~~~~fD~V~~~- 169 (257)
++.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.++++|+.+... .+++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 6789999999999999999987 559999999965 25678888776422 25689999874
Q ss_pred ---------HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ---------VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ---------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+..+.....+++.++.++|+|||.++++++.
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2233345677899999999999999998753
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-10 Score=96.81 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=68.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
+.++.+|||+|||+|.++.. ++ +..+|+|+|+|+. ++.++++|+.+.. ++||+|+++.-
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 45788999999999999999 77 6679999999964 3678888888765 78999988622
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+ ..++++++.+.|+|||.+++...
T Consensus 268 ~~---~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 KF---AHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp TT---GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred Hh---HHHHHHHHHHHcCCCCEEEEEEe
Confidence 11 22788999999999999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=89.64 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=61.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC-CchhHHHHH---
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD-ETFDFEFSN--- 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~-~~fD~V~~~--- 169 (257)
.+.++.+|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++ ..|+ |++|
T Consensus 27 ~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-vv~nlPy 104 (244)
T 1qam_A 27 RLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-IFGNIPY 104 (244)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-EEEECCG
T ss_pred CCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-EEEeCCc
Confidence 34678899999999999999999887 59999999964 4678899999988774 4554 3332
Q ss_pred ---------HhhccccHHHHH----HHHHHhccCCcEEEE
Q 025148 170 ---------VFDHALYPDKFV----MEIERTLKPGGVCVL 196 (257)
Q Consensus 170 ---------~l~h~~~~~~~l----~~~~r~LkpgG~l~i 196 (257)
.++|...+..++ +.+.|+++++|.+.+
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v 144 (244)
T 1qam_A 105 NISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL 144 (244)
T ss_dssp GGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred ccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence 333433333333 336677777765443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.3e-10 Score=99.08 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC----CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF----DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~----~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+... .+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999999999976669999999964 23577777765421 146899998
Q ss_pred HH--H--------hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--V--------FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~--------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ . .++.....+++.++.+.|+|||++++++.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85 1 22234567889999999999999999875
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=92.14 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=65.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCC----CCCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHR----QPFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~----~~~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.++++|+.+ +++++++||+|++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence 466789999999999999999987 459999999965 46788999887 3456778999988
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ -.... .++++.+.+ ++|+++++++.
T Consensus 363 dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 363 DPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred CCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 6 11111 145555543 78999988875
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-09 Score=91.70 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
....+|||||||+|.++..+... +..+|+++|+++. ...+...|...-+ +.+.+|+++++ +++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 55779999999999999998876 7789999999976 3456666766555 45679999886 899
Q ss_pred ccccHHH-HHHHHHHhccCCcEEEE
Q 025148 173 HALYPDK-FVMEIERTLKPGGVCVL 196 (257)
Q Consensus 173 h~~~~~~-~l~~~~r~LkpgG~l~i 196 (257)
|+++.++ ..-++...|+++|+++-
T Consensus 210 ~Le~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 210 CLETQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp HHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred HhhhhhhHHHHHHHHHhCCCCEEEe
Confidence 8875432 33389999999987664
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-09 Score=90.55 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchh
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD 164 (257)
....++....+.++++|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.+.++++.+||
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD 116 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN 116 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence 34444444456778999999999999999999875 49999999976 56789999999998888899
Q ss_pred HHHHHHh
Q 025148 165 FEFSNVF 171 (257)
Q Consensus 165 ~V~~~~l 171 (257)
.|++|.-
T Consensus 117 ~Iv~NlP 123 (295)
T 3gru_A 117 KVVANLP 123 (295)
T ss_dssp EEEEECC
T ss_pred EEEEeCc
Confidence 9988733
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-09 Score=90.72 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=49.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.++.+|+.+.+++ +||+|++|
T Consensus 37 ~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n 113 (299)
T 2h1r_A 37 AAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTAN 113 (299)
T ss_dssp HHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEE
T ss_pred hcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEc
Confidence 3345678899999999999999999875 49999999964 456788888877654 79999887
Q ss_pred Hhhcc
Q 025148 170 VFDHA 174 (257)
Q Consensus 170 ~l~h~ 174 (257)
.-.++
T Consensus 114 ~py~~ 118 (299)
T 2h1r_A 114 IPYKI 118 (299)
T ss_dssp CCGGG
T ss_pred CCccc
Confidence 33333
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.1e-09 Score=94.05 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--------------CCCcEEEecCCCC-----------------CCcEEEecCCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV--------------GVSDSVGIDLVPY-----------------PPLVIEGDFHRQP 157 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~ 157 (257)
.++.+|||.|||+|.++..+++. ...+++|+|+++. ...+.++|....+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 55679999999999999887753 2358999999965 2467888887766
Q ss_pred CCCCchhHHHHH-Hhhcccc-----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 158 FDDETFDFEFSN-VFDHALY-----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 158 ~~~~~fD~V~~~-~l~h~~~-----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.. ++||+|++| -+.+... ...+++.+.+.|||||++++.+|.
T Consensus 250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 54 379999997 3332211 136889999999999999999874
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=84.48 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=67.3
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----C---------CcEEEecCCCCCCCCCchhHH
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----P---------PLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----~---------~~~~~~d~~~~~~~~~~fD~V 166 (257)
++..+..++++.+|||+|||+|.++..+++. +...|+|+|+... + +.....+.....++.+.+|+|
T Consensus 81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvV 160 (282)
T 3gcz_A 81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTL 160 (282)
T ss_dssp HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEE
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEE
Confidence 3334557788899999999999999998864 6668999999743 1 112222222234567889999
Q ss_pred HHHHhhcc-----ccHH--HHHHHHHHhccCC--cEEEEEec
Q 025148 167 FSNVFDHA-----LYPD--KFVMEIERTLKPG--GVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~-----~~~~--~~l~~~~r~Lkpg--G~l~i~~~ 199 (257)
+|+.-.+. +... .+++-+.++|||| |.+++-+.
T Consensus 161 LSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 161 LCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred EecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 99633221 1111 2467778999999 99999874
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-08 Score=88.45 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. .+.+..+|+.+... + +||+|+++ -..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCcc
Confidence 4677899999999999999999875 49999999966 15788899888643 2 79999885 211
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ....+++.+. .|+|||+++++.
T Consensus 365 g--~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 G--LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred c--hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1 1224555554 599999999976
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-08 Score=83.11 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=65.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C----CCcEEEec--CCCC-----CCcEEE---e-cCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-G----VSDSVGID--LVPY-----PPLVIE---G-DFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~gvD--~s~~-----~~~~~~---~-d~~~~~~~~~~fD~ 165 (257)
+..+.+++++++|||+||++|.++..+++. + .+.++|+| +.|. .+.++. + |+.+++ ...+|+
T Consensus 65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~Dv 142 (269)
T 2px2_A 65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDT 142 (269)
T ss_dssp HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSE
T ss_pred HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCE
Confidence 333557899999999999999999999886 1 23567777 3333 123333 5 887643 557999
Q ss_pred HHHHH--------hhccccHHHHHHHHHHhccCCc-EEEEEec
Q 025148 166 EFSNV--------FDHALYPDKFVMEIERTLKPGG-VCVLHVA 199 (257)
Q Consensus 166 V~~~~--------l~h~~~~~~~l~~~~r~LkpgG-~l~i~~~ 199 (257)
|+|+. .+|..... ++.-+.++|+||| .+++-+.
T Consensus 143 VLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 143 LLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp EEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEES
T ss_pred EEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEEC
Confidence 98862 33332222 6667779999999 8888764
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.8e-08 Score=86.00 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=72.0
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------------CcEEEecCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------------SDSVGIDLV 142 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~s 142 (257)
++......++.++||.|||+|.++..++..+. .+|+|+|++
T Consensus 187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid 266 (385)
T 3ldu_A 187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID 266 (385)
T ss_dssp HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 33344456788999999999999988876421 479999999
Q ss_pred CC----------------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc---cHHHHHHHHHHhccC--CcEEEEEec
Q 025148 143 PY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL---YPDKFVMEIERTLKP--GGVCVLHVA 199 (257)
Q Consensus 143 ~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~---~~~~~l~~~~r~Lkp--gG~l~i~~~ 199 (257)
+. .+.+.++|+.+++.+ ++||+|++| ..+.+. +..++.+++.+.||+ ||.+.+.++
T Consensus 267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 267 EESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 76 357889999988765 489999997 333333 344566777778877 888888875
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.7e-08 Score=85.19 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=71.6
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------------CcEEEecC
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------------SDSVGIDL 141 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~ 141 (257)
.++......++..+||.+||+|.++..++..+. .+|+|+|+
T Consensus 192 ~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDi 271 (393)
T 3k0b_A 192 ALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDI 271 (393)
T ss_dssp HHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEES
T ss_pred HHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEEC
Confidence 333344456788999999999999988776421 35999999
Q ss_pred CCC----------------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc---cHHHHHHHHHHhccC--CcEEEEEe
Q 025148 142 VPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL---YPDKFVMEIERTLKP--GGVCVLHV 198 (257)
Q Consensus 142 s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~---~~~~~l~~~~r~Lkp--gG~l~i~~ 198 (257)
++. .+.+.++|+.+++.++ +||+|++| .-+.+. +..++.+++.+.||+ ||.+++.+
T Consensus 272 d~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 272 DARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp CHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 965 3678999999987654 89999998 333332 334455666677766 99988887
Q ss_pred c
Q 025148 199 A 199 (257)
Q Consensus 199 ~ 199 (257)
+
T Consensus 351 ~ 351 (393)
T 3k0b_A 351 S 351 (393)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=83.72 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCC-chhH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDE-TFDF 165 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~-~fD~ 165 (257)
...++....+.++ +|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++. .+|.
T Consensus 36 ~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 36 LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 3344444456677 99999999999999999987 59999999976 46789999999887653 6888
Q ss_pred HHHHHhhccc
Q 025148 166 EFSNVFDHAL 175 (257)
Q Consensus 166 V~~~~l~h~~ 175 (257)
|++|.-.++.
T Consensus 114 iv~NlPy~is 123 (271)
T 3fut_A 114 LVANLPYHIA 123 (271)
T ss_dssp EEEEECSSCC
T ss_pred EEecCccccc
Confidence 8888444443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=83.60 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=73.1
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------------CcEEEec
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------------SDSVGID 140 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD 140 (257)
..++......++..+||.+||+|.++..++..+. .+|+|+|
T Consensus 184 aall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvD 263 (384)
T 3ldg_A 184 AAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFD 263 (384)
T ss_dssp HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 3344444456788999999999999988776421 3599999
Q ss_pred CCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc---cHHHHHHHHHHhccC--CcEEEEE
Q 025148 141 LVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL---YPDKFVMEIERTLKP--GGVCVLH 197 (257)
Q Consensus 141 ~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~---~~~~~l~~~~r~Lkp--gG~l~i~ 197 (257)
+++. .+.+.++|+.+++.++ +||+|++| .-+.+. +..++.+++.+.||+ ||.+.+.
T Consensus 264 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 264 FDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9966 3678899999987654 79999997 333332 344566777777776 9999998
Q ss_pred ec
Q 025148 198 VA 199 (257)
Q Consensus 198 ~~ 199 (257)
++
T Consensus 343 t~ 344 (384)
T 3ldg_A 343 TN 344 (384)
T ss_dssp ES
T ss_pred EC
Confidence 85
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8.9e-08 Score=83.97 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=66.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHHHHhhccccH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALYP 177 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~ 177 (257)
..+++|.++||+||++|.++..+.+++. .|+|||+.+- .+.++++|......+.+.||+|+|++.. +|
T Consensus 207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p 282 (375)
T 4auk_A 207 ERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KP 282 (375)
T ss_dssp HHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CH
T ss_pred ccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---Ch
Confidence 4468899999999999999999999874 9999998864 5678899998887777889999997543 46
Q ss_pred HHHHHHHHHhccCC
Q 025148 178 DKFVMEIERTLKPG 191 (257)
Q Consensus 178 ~~~l~~~~r~Lkpg 191 (257)
.+.+.-+.++|..|
T Consensus 283 ~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 283 AKVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHhcc
Confidence 66666666666655
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-08 Score=83.04 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC----
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD---- 160 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~---- 160 (257)
....++....+.++.+|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 95 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTD 95 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCS
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccC
Confidence 33444444556778999999999999999999876 59999999965 4678999999987753
Q ss_pred CchhHHHHH
Q 025148 161 ETFDFEFSN 169 (257)
Q Consensus 161 ~~fD~V~~~ 169 (257)
++|| |++|
T Consensus 96 ~~~~-vv~N 103 (255)
T 3tqs_A 96 KPLR-VVGN 103 (255)
T ss_dssp SCEE-EEEE
T ss_pred CCeE-EEec
Confidence 4688 6555
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=82.16 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=63.9
Q ss_pred CCeEEEECCCCCHHHHHHH--------Hc--------CCCcEEEecCCCCC---------------------------Cc
Q 025148 111 ESKALCIGARVGQEVEALK--------RV--------GVSDSVGIDLVPYP---------------------------PL 147 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~--------~~--------~~~~v~gvD~s~~~---------------------------~~ 147 (257)
..+|+|+|||+|..+..+. +. +..+|+..|+-... ..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4789999999999987762 11 34567777765431 01
Q ss_pred EEE---ecCCCCCCCCCchhHHHHH-Hhhccc--------------------------------------cHHHHHHHHH
Q 025148 148 VIE---GDFHRQPFDDETFDFEFSN-VFDHAL--------------------------------------YPDKFVMEIE 185 (257)
Q Consensus 148 ~~~---~d~~~~~~~~~~fD~V~~~-~l~h~~--------------------------------------~~~~~l~~~~ 185 (257)
++. +.+....+|+++||+|+|+ ++|++. |...+++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2233346889999999996 888876 2334678889
Q ss_pred HhccCCcEEEEEecc
Q 025148 186 RTLKPGGVCVLHVAL 200 (257)
Q Consensus 186 r~LkpgG~l~i~~~~ 200 (257)
+.|+|||.+++++..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEec
Confidence 999999999999753
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-08 Score=85.35 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=80.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc------------------CCCcEEEecCCCC------------------------CCcE
Q 025148 111 ESKALCIGARVGQEVEALKRV------------------GVSDSVGIDLVPY------------------------PPLV 148 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~gvD~s~~------------------------~~~~ 148 (257)
..+|+|+||++|..+..+.+. +..+|+..|+-.. +..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999998776543 2346677776522 1244
Q ss_pred EEecCCC---CCCCCCchhHHHHH-HhhccccHHH---------------------------------------HHHHHH
Q 025148 149 IEGDFHR---QPFDDETFDFEFSN-VFDHALYPDK---------------------------------------FVMEIE 185 (257)
Q Consensus 149 ~~~d~~~---~~~~~~~fD~V~~~-~l~h~~~~~~---------------------------------------~l~~~~ 185 (257)
+.+.... ..|+++++|+|+|+ ++|++.+..+ +|+...
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544433 47899999999996 8888764321 255558
Q ss_pred HhccCCcEEEEEeccCCCc--C--------------------------cCC-CCCcCChhHHHHhcccCCc
Q 025148 186 RTLKPGGVCVLHVALSKRA--D--------------------------KYS-ANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 186 r~LkpgG~l~i~~~~~~~~--~--------------------------~y~-~~~~~~~~~~~~~f~~~~~ 227 (257)
+.|+|||.+++++...... . .+. ..++.+.+++..++++.|.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~ 283 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGS 283 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCS
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCC
Confidence 9999999999998643322 1 021 2245589999999998753
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-08 Score=95.04 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCeEEEECCCCCHHHHHHHH---cCC--CcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKR---VGV--SDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~---~~~--~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
+..|||||||+|.++....+ .+. .+|++||-|+. .+.++++|++++..| +++|+|+|..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw 436 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL 436 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc
Confidence 35799999999999554433 332 26899999865 578999999999887 4699999973
Q ss_pred hhcccc---HHHHHHHHHHhccCCcEEE
Q 025148 171 FDHALY---PDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 171 l~h~~~---~~~~l~~~~r~LkpgG~l~ 195 (257)
+..... -.+.+....|.|||||+++
T Consensus 437 MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 437 LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 333221 1246667779999999875
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-07 Score=77.87 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=65.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCC-------------CcEEEecCCCCCCCCCchhHHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYP-------------PLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~-------------~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
+.++.++.+|||+||++|.++..+++. +...|+|+|+.... +.....+..-..+..+.+|+|+|+.
T Consensus 76 k~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~ 155 (300)
T 3eld_A 76 RGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDI 155 (300)
T ss_dssp HTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred hCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecC
Confidence 366788999999999999999999985 55688999987431 1112222222245567899999863
Q ss_pred hhccc----cH---HHHHHHHHHhccCC-cEEEEEec
Q 025148 171 FDHAL----YP---DKFVMEIERTLKPG-GVCVLHVA 199 (257)
Q Consensus 171 l~h~~----~~---~~~l~~~~r~Lkpg-G~l~i~~~ 199 (257)
..+.. |. ...+.-+.++|+|| |.|++-+.
T Consensus 156 APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 156 GESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 33311 11 23467778999999 99999874
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=72.27 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCCeEEEECCCCC-HHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCC-CchhHHHH
Q 025148 109 SNESKALCIGARVG-QEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDD-ETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~-~~fD~V~~ 168 (257)
..+++|||||||+| ..+..|++....+|+++|+++..+.+++.|+.+....- +.||+|++
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYs 95 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYS 95 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEE
Confidence 45679999999999 69999997433599999999998889999998743321 36888866
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-08 Score=85.90 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCC--CCC------------
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDD------------ 160 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~------------ 160 (257)
.+.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.++.+|+.+.. +.+
T Consensus 213 ~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 213 SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 3678999999999999999884 359999999975 3567777776541 121
Q ss_pred --CchhHHHHHHhhccccHH--HHHHHHHHhccCCcEEEEEecc
Q 025148 161 --ETFDFEFSNVFDHALYPD--KFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 --~~fD~V~~~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++||+|+.+ |. .+..++.+.|+++|.++...++
T Consensus 292 ~~~~fD~Vv~d-------PPr~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 292 KSYQCETIFVD-------PPRSGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp GGCCEEEEEEC-------CCTTCCCHHHHHHHTTSSEEEEEESC
T ss_pred ccCCCCEEEEC-------cCccccHHHHHHHHhCCCEEEEEECC
Confidence 379998764 11 1345677788899988877653
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-08 Score=93.28 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=64.2
Q ss_pred CCeEEEECCCCCHHHHHHHH----cC----------CCcEEEecCCCC---------------CCcEEEecCCCCCCC--
Q 025148 111 ESKALCIGARVGQEVEALKR----VG----------VSDSVGIDLVPY---------------PPLVIEGDFHRQPFD-- 159 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~----~~----------~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~-- 159 (257)
+..|||||||+|.++..... .+ ..+|+|||.|+. .+.++.+|++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 45899999999999743221 11 248999999864 589999999998774
Q ss_pred ---CCchhHHHHHHhhccccH---HHHHHHHHHhccCCcEEE
Q 025148 160 ---DETFDFEFSNVFDHALYP---DKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 160 ---~~~fD~V~~~~l~h~~~~---~~~l~~~~r~LkpgG~l~ 195 (257)
.+++|+|+|..+..+.+- .+.+..+.|.|||||+++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 578999999755544332 357777789999999766
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=81.32 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=65.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCC---CchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDD---ETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~---~~fD~V~ 167 (257)
.+++.+|||+|||+|..+..+++. +.++|+++|+++. ++.++.+|+.+++..+ ++||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 467899999999999999999884 4569999999965 4677888887765432 5799987
Q ss_pred HH-------Hhhccc-----------cH-------HHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN-------VFDHAL-----------YP-------DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~-------~l~h~~-----------~~-------~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ ++..-+ +. .++++.+.+.|+ ||+++.+++.
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 52 332211 11 235666667776 9999988764
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-08 Score=83.03 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--------cC-----CCcEEEecCCCC-------------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKR--------VG-----VSDSVGIDLVPY------------------------------- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~v~gvD~s~~------------------------------- 144 (257)
+++.+|||+|+|+|..+..+.+ .+ ..+++++|..+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 3457999999999998877543 22 248999998761
Q ss_pred ------------CCcEEEecCCC-CCCCC----CchhHHHHHHhhcccc----HHHHHHHHHHhccCCcEEEEEeccCCC
Q 025148 145 ------------PPLVIEGDFHR-QPFDD----ETFDFEFSNVFDHALY----PDKFVMEIERTLKPGGVCVLHVALSKR 203 (257)
Q Consensus 145 ------------~~~~~~~d~~~-~~~~~----~~fD~V~~~~l~h~~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~ 203 (257)
.+.++.+|+.+ ++.-+ ..||+|+.+.+.--.+ ..++++++.+.|||||+++..+
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys----- 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT----- 213 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC-----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe-----
Confidence 12355666655 33222 2799998864432222 3479999999999999988522
Q ss_pred cCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEE
Q 025148 204 ADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFR 245 (257)
Q Consensus 204 ~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~ 245 (257)
....+.+-+...||. +....||+-.++++..
T Consensus 214 ----------aa~~vrr~L~~aGF~-v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 214 ----------SAGFVRRGLQEAGFT-MQKRKGFGRKREMLCG 244 (257)
T ss_dssp ----------CBHHHHHHHHHHTEE-EEEECCSTTCCCEEEE
T ss_pred ----------CCHHHHHHHHHCCCE-EEeCCCCCCCCceEEE
Confidence 234677788889996 6677888866555544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-07 Score=76.82 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEe-cCCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEG-DFHRQPFDDE 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~-d~~~~~~~~~ 161 (257)
-+.++..+..++++++|||+||++|.++.+.+.. +...|+|+|+-.. .+.+..+ |+..++. .
T Consensus 82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~ 159 (321)
T 3lkz_A 82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--E 159 (321)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--C
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--C
Confidence 3444555667788999999999999999988775 6668999999865 1234444 6655543 5
Q ss_pred chhHHHHHHhhccccHH-------HHHHHHHHhccCC-cEEEEEe
Q 025148 162 TFDFEFSNVFDHALYPD-------KFVMEIERTLKPG-GVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~-------~~l~~~~r~Lkpg-G~l~i~~ 198 (257)
.+|+|+|++-+--.++. ++|+-+.++|++| |-+++-+
T Consensus 160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV 204 (321)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence 69999987445444332 2566667899999 8888876
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.6e-08 Score=86.31 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=63.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------C-------------------CcEEEecCCCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------P-------------------PLVIEGDFHRQPF 158 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------~-------------------~~~~~~d~~~~~~ 158 (257)
++.+|||+|||+|..+..++.. +..+|+++|+++. + +.++++|+.+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 5789999999999999999886 6668999999966 2 3445555544311
Q ss_pred -CCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 -DDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 -~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++||+|+.+-. ..+..++..+.+.||+||+++++.
T Consensus 127 ~~~~~fD~I~lDP~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1346898875421 234688999999999999888865
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-07 Score=73.38 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=69.1
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEe-cCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEG-DFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~-d~~~~~~~~~~ 162 (257)
+.++..+..++++++|||+||++|.++...+.. +..+|+|+|+-.. .+.+..+ |+..++- ..
T Consensus 67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~ 144 (267)
T 3p8z_A 67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EK 144 (267)
T ss_dssp HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CC
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--cc
Confidence 334444557789999999999999999988875 6668999999855 3456666 7655543 66
Q ss_pred hhHHHHHHhhccccHH-------HHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPD-------KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~-------~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|.|+|+.-+--.++. ++|+-+.++|++ |-+++-+
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence 9999997444333322 255666789998 7777765
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-07 Score=88.20 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc----C---------------CCcEEEecCCCC---------------C-----CcE
Q 025148 108 LSNESKALCIGARVGQEVEALKRV----G---------------VSDSVGIDLVPY---------------P-----PLV 148 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~v~gvD~s~~---------------~-----~~~ 148 (257)
..++.+|||.|||+|.++..+.+. . ..+++|+|+++. . ..+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 356789999999999998877653 1 137999999965 2 467
Q ss_pred EEecCCCCC-CCCCchhHHHHH-Hhhccc--------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 149 IEGDFHRQP-FDDETFDFEFSN-VFDHAL--------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 149 ~~~d~~~~~-~~~~~fD~V~~~-~l~h~~--------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.++|....+ ...++||+|++| -+.... ....+++.+.+.|||||++++.+|.
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 788876543 345689999997 222111 1236889999999999999999874
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.2e-08 Score=86.25 Aligned_cols=87 Identities=15% Similarity=0.039 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------C--CcEEEecCCCCC--CCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------P--PLVIEGDFHRQP--FDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~--~~~~~~d~~~~~--~~~~~fD~V~ 167 (257)
+++.+|||++||+|.++..++.. +..+|+++|+++. + +.++.+|+.+.- ...++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 45789999999999999998884 3368999999976 2 566777765431 1145799998
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+-. ..+..++..+.+.|++||+++++.
T Consensus 131 lDP~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDPF---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 8642 234578899999999999888876
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-07 Score=75.62 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCc-hhHH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDET-FDFE 166 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~-fD~V 166 (257)
...++....+.++.+|||||||+|.++..+++.+..+|+|+|+++. ++.++++|+.++++++.. ...|
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~v 99 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKV 99 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEE
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEE
Confidence 3334444445678899999999999999999986569999999964 357889999988876521 1145
Q ss_pred HHH
Q 025148 167 FSN 169 (257)
Q Consensus 167 ~~~ 169 (257)
++|
T Consensus 100 v~N 102 (249)
T 3ftd_A 100 VGN 102 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-07 Score=81.35 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=64.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----------------CCCcEEEecCCCC----------------CCcEEEec---C
Q 025148 110 NESKALCIGARVGQEVEALKRV-----------------GVSDSVGIDLVPY----------------PPLVIEGD---F 153 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~gvD~s~~----------------~~~~~~~d---~ 153 (257)
...+|+|+||++|..+..+.+. +..+|+..|+... +..++.+. +
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999877554321 2356778887644 11344443 4
Q ss_pred CCCCCCCCchhHHHHH-HhhccccH---------------------------------HHHHHHHHHhccCCcEEEEEec
Q 025148 154 HRQPFDDETFDFEFSN-VFDHALYP---------------------------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~~-~l~h~~~~---------------------------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
....|+++++|+|+|+ ++|++.+. ..+|+...+.|+|||.+++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 4467899999999996 88887541 2347888999999999999974
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-07 Score=75.85 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=72.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCC-CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQ-PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~-~~~~~~fD~ 165 (257)
.....+||-||.|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 356689999999999999999986 5568999999965 456788887764 345678999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+.+..+... .-.++++.+++.|+|||+++....
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 9886443221 234789999999999999999764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-06 Score=74.94 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=47.7
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---CcEEEecCCCC-----------CCcEEEecCCCCCCCC
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGV---SDSVGIDLVPY-----------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~ 160 (257)
..++....+.++.+|||||||+|.++..+++.+. ++|+|+|+++. ++.++++|+.++++++
T Consensus 32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 3344444457789999999999999999998643 23999999965 4678999999988754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.1e-06 Score=80.00 Aligned_cols=97 Identities=12% Similarity=-0.077 Sum_probs=67.4
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcC-------------------------------------------CCcEEEe
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVG-------------------------------------------VSDSVGI 139 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------------------------------~~~v~gv 139 (257)
+......++..+||.+||+|.++..++..+ ..+++|+
T Consensus 183 l~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~ 262 (703)
T 3v97_A 183 VMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGS 262 (703)
T ss_dssp HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred HHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEE
Confidence 333344677899999999999988776531 1479999
Q ss_pred cCCCC----------------CCcEEEecCCCCC--CCCCchhHHHHH--Hhhccc---cHH---HHHHHHHHhccCCcE
Q 025148 140 DLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFSN--VFDHAL---YPD---KFVMEIERTLKPGGV 193 (257)
Q Consensus 140 D~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~--~l~h~~---~~~---~~l~~~~r~LkpgG~ 193 (257)
|+++. .+.+.++|+.++. ..+++||+|++| .-+.+. +.. +.+.++.+.+.|||.
T Consensus 263 Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp ESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 99976 2578899998873 334489999998 222222 222 334555666678999
Q ss_pred EEEEec
Q 025148 194 CVLHVA 199 (257)
Q Consensus 194 l~i~~~ 199 (257)
+++.++
T Consensus 343 ~~ilt~ 348 (703)
T 3v97_A 343 LSLFSA 348 (703)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999885
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-06 Score=80.38 Aligned_cols=121 Identities=9% Similarity=-0.011 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C---CCcEEEecCCCCCC---------------------cEEEecCCCC-CCCCCc
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G---VSDSVGIDLVPYPP---------------------LVIEGDFHRQ-PFDDET 162 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~~---------------------~~~~~d~~~~-~~~~~~ 162 (257)
.++.+|||.|||+|.++..+++. + ..+++|+|+++... .+...|+... ....+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 46789999999999999998875 2 35799999997621 2222333332 223467
Q ss_pred hhHHHHH--Hhhccc---------------------------c-HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCc
Q 025148 163 FDFEFSN--VFDHAL---------------------------Y-PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDL 212 (257)
Q Consensus 163 fD~V~~~--~l~h~~---------------------------~-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~ 212 (257)
||+|++| ...... + ...+++.+.+.||+||++.+.+|..-- +...
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L---f~sg-- 474 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL---TAQG-- 474 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH---HCCS--
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh---ccCC--
Confidence 9999887 211000 0 234678899999999999999985321 0000
Q ss_pred CChhHHHHhc-ccCCcEEEEEec
Q 025148 213 FSVKPLVKLF-KRSEMVRVRKVD 234 (257)
Q Consensus 213 ~~~~~~~~~f-~~~~~~~~~~~~ 234 (257)
-....+++.+ ++..+..+....
T Consensus 475 ~~~kkLRk~LLe~~~I~aIIdLP 497 (878)
T 3s1s_A 475 NESKAFREFLVGNFGLEHIFLYP 497 (878)
T ss_dssp HHHHHHHHHHTTTTCEEEEEECC
T ss_pred hHHHHHHHHHHhCCCeEEEEECC
Confidence 0134566554 455555555553
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.7e-08 Score=80.41 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=61.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC-------C----------------CCcEEEecCCCC-C-CCC--C
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP-------Y----------------PPLVIEGDFHRQ-P-FDD--E 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-------~----------------~~~~~~~d~~~~-~-~~~--~ 161 (257)
.++.+|||+|||+|..+..+++.+ ++|+|+|+++ . .+.++++|..+. + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 456899999999999999999975 5999999999 3 267888888764 2 444 6
Q ss_pred chhHHHHH-Hhhcc--------------------ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 162 TFDFEFSN-VFDHA--------------------LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 162 ~fD~V~~~-~l~h~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+||+|+++ .+.|. .+..++++++.++.+. .+++..|
T Consensus 161 ~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p 217 (258)
T 2r6z_A 161 KPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRP 217 (258)
T ss_dssp CCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEE
T ss_pred CccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcC
Confidence 89998774 32221 2344556667776543 5666554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-06 Score=79.79 Aligned_cols=119 Identities=15% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----CCCcEEEecCCCC-----------------CCcEEEecCCCC--C-CCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV----GVSDSVGIDLVPY-----------------PPLVIEGDFHRQ--P-FDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~-----------------~~~~~~~d~~~~--~-~~~~~fD 164 (257)
.++.+|+|.+||+|.++..+.+. +..+++|+|+++. ...+.++|.... | .....||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 46789999999999998887764 3468999999965 124778887765 3 4567899
Q ss_pred HHHHH--Hhhcc-------cc---------------HHHHHHHHHHhcc-CCcEEEEEeccCCCcCcCCCCCcCChhHHH
Q 025148 165 FEFSN--VFDHA-------LY---------------PDKFVMEIERTLK-PGGVCVLHVALSKRADKYSANDLFSVKPLV 219 (257)
Q Consensus 165 ~V~~~--~l~h~-------~~---------------~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~y~~~~~~~~~~~~ 219 (257)
+|++| ..... .+ ...+++.+.+.|| +||++.+.+|..-- +... ....++
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~L---f~~~---~~~~iR 373 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVL---FRGN---AEGTIR 373 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHH---HCCT---HHHHHH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHh---hCCc---hhHHHH
Confidence 99887 11110 01 1237899999999 99999999875321 1110 135566
Q ss_pred HhcccCC-cEEEEEe
Q 025148 220 KLFKRSE-MVRVRKV 233 (257)
Q Consensus 220 ~~f~~~~-~~~~~~~ 233 (257)
+.+-+.+ +..+...
T Consensus 374 k~Lle~~~l~~II~L 388 (542)
T 3lkd_A 374 KALLEEGAIDTVIGL 388 (542)
T ss_dssp HHHHHTTCEEEEEEC
T ss_pred HHHHhCCceeEEEEc
Confidence 6655544 4444444
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-06 Score=72.02 Aligned_cols=66 Identities=14% Similarity=-0.024 Sum_probs=47.6
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCc--EEEecCCCC-------------CCcEEEecCCCCCCCCC----
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRVGVSD--SVGIDLVPY-------------PPLVIEGDFHRQPFDDE---- 161 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~-------------~~~~~~~d~~~~~~~~~---- 161 (257)
.++....+.++++|||||||+|.++. +.. + .+ |+|+|+++. ++.++++|+.++++++.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhccc
Confidence 33334445778899999999999999 765 3 36 999999955 35788899988876532
Q ss_pred -chhHHHHH
Q 025148 162 -TFDFEFSN 169 (257)
Q Consensus 162 -~fD~V~~~ 169 (257)
..|.|++|
T Consensus 89 ~~~~~vvsN 97 (252)
T 1qyr_A 89 GQPLRVFGN 97 (252)
T ss_dssp TSCEEEEEE
T ss_pred CCceEEEEC
Confidence 12456665
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.8e-07 Score=77.29 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=48.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCC--CC---CCchhHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQP--FD---DETFDFE 166 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~---~~~fD~V 166 (257)
.+.++++|||+|||+|..+..+++. +..+|+|+|+|+. ++.++++|+.+++ ++ .++||.|
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 102 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence 3467889999999999999999986 3569999999965 3567788877654 11 1468887
Q ss_pred HHH
Q 025148 167 FSN 169 (257)
Q Consensus 167 ~~~ 169 (257)
+++
T Consensus 103 l~D 105 (301)
T 1m6y_A 103 LMD 105 (301)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-06 Score=80.65 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=80.1
Q ss_pred CeEEEECCCCCHHHHHHHHc--------C--------CCcEEEecCCCC----------------CCcEEEecCCCCC-C
Q 025148 112 SKALCIGARVGQEVEALKRV--------G--------VSDSVGIDLVPY----------------PPLVIEGDFHRQP-F 158 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~--------~--------~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~ 158 (257)
.+|||.+||+|.++..+.+. . ..+++|+|+++. .+.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 49999999999998776431 1 357999999976 1222566655443 4
Q ss_pred CCCchhHHHHH---Hhhc-----------------------cc----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC
Q 025148 159 DDETFDFEFSN---VFDH-----------------------AL----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS 208 (257)
Q Consensus 159 ~~~~fD~V~~~---~l~h-----------------------~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~ 208 (257)
++.+||+|++| .... +. ..-.+++.+.+.|||||++.+.+|..--...-
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~- 404 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNT- 404 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCG-
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCc-
Confidence 56789999997 2110 11 01257899999999999999998743210000
Q ss_pred CCCcCChhHHHHhcccCC-cEEEEEec-----CCCCc-eEEEEEccc
Q 025148 209 ANDLFSVKPLVKLFKRSE-MVRVRKVD-----GFGLD-TEVVFRKNA 248 (257)
Q Consensus 209 ~~~~~~~~~~~~~f~~~~-~~~~~~~~-----gf~~~-~~vv~~k~~ 248 (257)
-....+++.+-+.+ +..+.... +-+.. ..++++|+.
T Consensus 405 ----~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 405 ----NNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDK 447 (544)
T ss_dssp ----GGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred ----chHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence 02456666655554 44444443 22222 455666543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.99 E-value=6.4e-07 Score=75.28 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCC--CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCCC-CCCCC
Q 025148 109 SNE--SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHRQ-PFDDE 161 (257)
Q Consensus 109 ~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~~-~~~~~ 161 (257)
.++ .+|||+|||+|..+..+++.+. +|+++|+++. ++.++++|..+. +...+
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~ 163 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence 456 8999999999999999999865 8999999973 245778887653 32223
Q ss_pred chhHHHHH-HhhccccHHHHHHHHHHhccCCc
Q 025148 162 TFDFEFSN-VFDHALYPDKFVMEIERTLKPGG 192 (257)
Q Consensus 162 ~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG 192 (257)
+||+|+++ .+.+ .....++++..++|++.+
T Consensus 164 ~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 164 RPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp CCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred cCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence 69999887 5544 222245555666666544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.4e-05 Score=64.58 Aligned_cols=81 Identities=7% Similarity=0.001 Sum_probs=56.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------C------CcEEEecCCCC---------------
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------P------PLVIEGDFHRQ--------------- 156 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~------~~~~~~d~~~~--------------- 156 (257)
+..+|||+||| .-+..+++...++|+.+|.+++ . +.++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 46799999985 6777777753569999999865 2 45677775432
Q ss_pred C--------C-CCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 157 P--------F-DDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 157 ~--------~-~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
+ . ..++||+|+.+.- .....+..+.+.|+|||++++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~----k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR----FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS----SHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHhhhhhccccCCCCCEEEEeCC----CchhHHHHHHHhcCCCeEEEE
Confidence 1 1 2367999987521 122556667799999999976
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.1e-06 Score=76.71 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=48.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-CC-CCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-PF-DDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~~-~~~~fD~V~ 167 (257)
.+.+|.+|||+|||+|..+..+++.+ .+|+|+|+|+. ++.++++|+.+. +. ++++||+|+
T Consensus 90 ~l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred hcCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 34458999999999999999998875 49999999965 256788888764 32 245799998
Q ss_pred HH
Q 025148 168 SN 169 (257)
Q Consensus 168 ~~ 169 (257)
++
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 75
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.74 E-value=7e-05 Score=63.23 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCCeEEEECC------CCCHHHHHHHHc-CC-CcEEEecCCCC---CCcEEEecCCCCCC
Q 025148 91 KIQVFAKFFDDLKR-KKLLSNESKALCIGA------RVGQEVEALKRV-GV-SDSVGIDLVPY---PPLVIEGDFHRQPF 158 (257)
Q Consensus 91 ~~~~~~~~~~~l~~-~~~~~~~~~vLDiGc------G~G~~~~~l~~~-~~-~~v~gvD~s~~---~~~~~~~d~~~~~~ 158 (257)
.+..+..+++-+-. ......+++|||+|| .+|.. .+++. +. +.|+++|+.+- ...++++|......
T Consensus 89 nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~ 166 (344)
T 3r24_A 89 NVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT 166 (344)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE
T ss_pred eHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc
Confidence 34456666666522 223477899999996 55663 33443 32 48999999975 23558899766443
Q ss_pred CCCchhHHHHH----Hhhccc--------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 159 DDETFDFEFSN----VFDHAL--------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 159 ~~~~fD~V~~~----~l~h~~--------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.++||+|+|+ .--+.. --+.++.-+.++|+|||.+++-+-
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 4779999885 222211 134566777889999999999874
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.2e-05 Score=63.91 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=62.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc------CCCcEEEecCCC----------------------------------------
Q 025148 110 NESKALCIGARVGQEVEALKRV------GVSDSVGIDLVP---------------------------------------- 143 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~---------------------------------------- 143 (257)
..+.|||+|+..|..+..+++. ...+|+++|..+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4579999999999998887652 256899999642
Q ss_pred ---CCCcEEEecCCC-CC-CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 144 ---YPPLVIEGDFHR-QP-FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 144 ---~~~~~~~~d~~~-~~-~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++.++.+++.+ ++ +++++||+|+.+. ++.......++.+.+.|+|||++++..
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D~y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-DLYESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-CSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-CccccHHHHHHHHHhhcCCCEEEEEcC
Confidence 235567777654 22 4456899987753 122233468899999999999998843
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=9.4e-06 Score=71.46 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=64.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC-----------------------CcEEEecCCCC----CCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP-----------------------PLVIEGDFHRQ----PFDDE 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~-----------------------~~~~~~d~~~~----~~~~~ 161 (257)
.+..+||-||.|.|..+..+.+.+..+|+.+|+++.- +.++.+|.... .-..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4567999999999999999998766789999999761 23344444321 11235
Q ss_pred chhHHHHHHhhcc-----------ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFSNVFDHA-----------LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~-----------~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+||+|+.+....- ..-.++++.+++.|+|||+++.+.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7999987644321 123467899999999999999865
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=3e-05 Score=68.13 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC---------------------CCcEEEecCCCCC-CCCCchh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY---------------------PPLVIEGDFHRQP-FDDETFD 164 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~---------------------~~~~~~~d~~~~~-~~~~~fD 164 (257)
.++|.+|||+.||.|.=+..+++.+ .+.|+++|+++. ++.+...|...++ ...+.||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 5789999999999999999988863 357999999965 2334455555442 3456799
Q ss_pred HHHHH-----H--hhc-----------------cc-cHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 165 FEFSN-----V--FDH-----------------AL-YPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 165 ~V~~~-----~--l~h-----------------~~-~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
.|+.+ . .-+ +. -..+++....+.|||||+|+-+|+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 87543 1 100 00 01356788889999999999998743
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=61.93 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred CCeEEEECCCCCHHHHHHH----H-cCCC--cEEEecCCCC-----------------------------CCcEEEecCC
Q 025148 111 ESKALCIGARVGQEVEALK----R-VGVS--DSVGIDLVPY-----------------------------PPLVIEGDFH 154 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~----~-~~~~--~v~gvD~s~~-----------------------------~~~~~~~d~~ 154 (257)
.-+|||+|-|+|....... + .+.. +++.+|..+- ...+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 3589999999998754322 2 2333 4466664321 0123445544
Q ss_pred CC--CCCCCchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 155 RQ--PFDDETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 155 ~~--~~~~~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+. .+++..||+|+-+.+.--.+| .++++.+++.++|||+++--+ ....+++-+.++||.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt---------------aag~VRR~L~~aGF~ 241 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS---------------SSLSVRKSLLTLGFK 241 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC---------------CCHHHHHHHHHTTCE
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe---------------CcHHHHHHHHHCCCE
Confidence 32 234457898877766555555 479999999999999876422 356788899999996
Q ss_pred EEEEecCCCCceEEEEEc
Q 025148 229 RVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 229 ~~~~~~gf~~~~~vv~~k 246 (257)
+....||+-.++++...
T Consensus 242 -V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 242 -VGSSREIGRKRKGTVAS 258 (308)
T ss_dssp -EEEEECC---CEEEEEE
T ss_pred -EEecCCCCCCCceeEEe
Confidence 67778998766665553
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00062 Score=62.84 Aligned_cols=92 Identities=20% Similarity=0.143 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----C----------CCcEEEecCCCC---------------CCcEEEecCCCCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV----G----------VSDSVGIDLVPY---------------PPLVIEGDFHRQPFD 159 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~----------~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~ 159 (257)
..+.+|+|-+||+|.++....+. . ...++|+|+++. ...+..+|....+..
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 56679999999999998766532 1 236999999865 234566666554432
Q ss_pred ----CCchhHHHHH-Hh--h-------ccc------cH-HHHHHHHHHhcc-------CCcEEEEEecc
Q 025148 160 ----DETFDFEFSN-VF--D-------HAL------YP-DKFVMEIERTLK-------PGGVCVLHVAL 200 (257)
Q Consensus 160 ----~~~fD~V~~~-~l--~-------h~~------~~-~~~l~~~~r~Lk-------pgG~l~i~~~~ 200 (257)
...||+|++| -+ . ... +. ..+++.+.+.|| +||++.+.+|.
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 3469999887 11 1 111 11 235688888887 79999999984
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00074 Score=57.56 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++.... .+++.|||++||+|..+..+++.+. +++|+|+++.
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~ 268 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPR 268 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHH
Confidence 44555544333 6789999999999999999988775 9999999875
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=71.20 Aligned_cols=122 Identities=23% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-----CCcEEEecCCCCCC----------cEEEe--cCCC-CCCCCCchhHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-----VSDSVGIDLVPYPP----------LVIEG--DFHR-QPFDDETFDFEFS- 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-----~~~v~gvD~s~~~~----------~~~~~--d~~~-~~~~~~~fD~V~~- 168 (257)
.+..+|||||.|+|..+..+.+. + ..+++-.|+|+... .+... |..+ .++..++||+|++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 45679999999999876554432 1 23678889986522 11111 2222 1335567999887
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCC------CcCcCCC-----CCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK------RADKYSA-----NDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~y~~-----~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++-..+..+.++++++.|||||.+++...... ..| +.. ....+..++.+++.+.+|..+.
T Consensus 1319 ~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~-~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~ 1391 (2512)
T 2vz8_A 1319 CALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGF-LTSPEQGGRHLLSQDQWESLFAGASLHLVA 1391 (2512)
T ss_dssp CC--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEE
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccc-cccccccCCcccCHHHHHHHHHhCCCceee
Confidence 6887777888999999999999999988653210 000 000 1223455666677777776544
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0042 Score=52.38 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=34.3
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+....+++++.+||.+||.|..+..+++. .++|+|+|.++.
T Consensus 15 le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~ 55 (285)
T 1wg8_A 15 LDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPE 55 (285)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHH
T ss_pred HHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHH
Confidence 33334578899999999999999999997 469999999974
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.011 Score=49.25 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++... ..+++.|||..||+|..+....+.+. +++|+|+++.
T Consensus 200 ~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~ 245 (260)
T 1g60_A 200 DLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAE 245 (260)
T ss_dssp HHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHH
Confidence 4455544333 47889999999999999999988775 9999999864
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.023 Score=49.51 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=37.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQ 156 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~ 156 (257)
++..|||||.|.|.++..|.+. ...+|+++|+++. ++.++.+|+.++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 3589999999999999999985 3358999999844 567788887554
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.17 Score=42.04 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--------CCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV--------GVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~ 144 (257)
.-.+.|+|+||-.|..+..+++. ...+|+|+|.-+.
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG 111 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTG 111 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSC
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCC
Confidence 45679999999999988886542 2469999995543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.037 Score=48.80 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=56.6
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------CcEEEecCCCCCC---------CCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------PLVIEGDFHRQPF---------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~~~~~~d~~~~~~---------~~~~fD~ 165 (257)
...+++|++||-+|||. |..+..+++. |..+|+++|.+++. ..++ |..+..+ ....+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g~g~Dv 257 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGKPEVDC 257 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCCCCCCE
Confidence 44568899999999976 7777777774 54489999988651 2222 2222111 1124676
Q ss_pred HHHHHhhcc---------ccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHA---------LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~---------~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-.+-... ..+...+++..+.|++||.+++.
T Consensus 258 vid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 258 GVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 654321100 01235788999999999998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.03 Score=48.35 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=54.9
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCCCCCCchhHHHHHHhhccc
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQPFDDETFDFEFSNVFDHAL 175 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~~~~~~fD~V~~~~l~h~~ 175 (257)
..+++|++||-+|+|. |..+..+++.-..+|+++|.+++.. .++ .+... +.. .+|+|+-.+-.
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~--~~~-~~D~vid~~g~--- 244 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFY-TDPKQ--CKE-ELDFIISTIPT--- 244 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEE-SSGGG--CCS-CEEEEEECCCS---
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeec-CCHHH--Hhc-CCCEEEECCCc---
Confidence 3568899999999875 6677777775445999999988721 222 22222 122 57877643111
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+ ..++...+.|++||.+++.
T Consensus 245 -~-~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 -H-YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp -C-CCHHHHHTTEEEEEEEEEC
T ss_pred -H-HHHHHHHHHHhcCCEEEEE
Confidence 1 2567788999999998875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.038 Score=48.14 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=53.8
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCCC-----CCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQ-----PFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~-----~~~~~~fD~V~~ 168 (257)
...++++++||-+|||. |..+..+++. +..+|+++|.+++.. .++..+-.++ ...++.+|+|+.
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid 264 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALE 264 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEE
Confidence 44568899999999876 6777777764 544799999886521 1221111110 001113555443
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .. ....+++..+.|++||.+++.
T Consensus 265 ~----~g-~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 265 S----TG-SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp C----SC-CHHHHHHHHHTEEEEEEEEEC
T ss_pred C----CC-CHHHHHHHHHHHhcCCEEEEe
Confidence 2 11 125678899999999998875
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.078 Score=45.77 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY 144 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~ 144 (257)
+.+.+....+++|+.++|..||.|..+..+++. +.++|+|+|.++.
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~ 93 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQ 93 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHH
Confidence 334444444678999999999999999999885 4579999999964
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.0096 Score=50.20 Aligned_cols=91 Identities=11% Similarity=-0.034 Sum_probs=64.3
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCC-C---CCCCCchhHHHHH-Hhh
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHR-Q---PFDDETFDFEFSN-VFD 172 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~-~---~~~~~~fD~V~~~-~l~ 172 (257)
+..+||+=+|||.++..+.+.+ .+++.+|.++. .+.+.+.|... + .-+...||+|+.+ -++
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC
Confidence 5678999999999999988844 69999999865 24555666432 1 1223469999887 455
Q ss_pred ccccHHHHHHHHHH--hccCCcEEEEEeccCC
Q 025148 173 HALYPDKFVMEIER--TLKPGGVCVLHVALSK 202 (257)
Q Consensus 173 h~~~~~~~l~~~~r--~LkpgG~l~i~~~~~~ 202 (257)
.-.+.+++++.+.+ .+.|+|++++..|...
T Consensus 171 ~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 171 RKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp STTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 33455666666665 5679999999988543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.17 E-value=0.74 Score=39.63 Aligned_cols=132 Identities=10% Similarity=0.013 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC----------------------------
Q 025148 93 QVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP---------------------------- 143 (257)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~---------------------------- 143 (257)
..+.+.+...+.. .+...|+.+|||.......+... +...++-+|.-+
T Consensus 83 ~~iD~~v~~fl~~---~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 83 VGIDAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHH---CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 3344444444433 34578999999999999999874 556777787521
Q ss_pred -------CCCcEEEecCCCCCC---------CCCchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCC--
Q 025148 144 -------YPPLVIEGDFHRQPF---------DDETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSK-- 202 (257)
Q Consensus 144 -------~~~~~~~~d~~~~~~---------~~~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~-- 202 (257)
.....+.+|+.+... ..+...++++. ++.++. ...++++.+.+.. |+|.+++......
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~ 238 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ 238 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC
Confidence 123456667765321 11233456664 666665 3335667777766 7777654322111
Q ss_pred ---C-------------cCcC-CCCCcCChhHHHHhcccCCcE
Q 025148 203 ---R-------------ADKY-SANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 203 ---~-------------~~~y-~~~~~~~~~~~~~~f~~~~~~ 228 (257)
. ...+ ....+.+.++..+.|.+.||.
T Consensus 239 ~~~~fg~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 239 PNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp TTCCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred CcchHHHHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0 0111 111344788899999999997
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.13 E-value=0.016 Score=49.14 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...++++++.|+|||||.+++.+..
T Consensus 75 ~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 75 ELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3456789999999999999998753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.084 Score=44.79 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=51.8
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC--------cEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP--------LVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~--------~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
....+++|++||-+|+|. |..+..+++....+|+++| +++.. ..+..|...+ .+.+|+|+-.+-.
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g~-- 209 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVNS-- 209 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC-----
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCCc--
Confidence 345568899999999954 6667777765334999999 77621 1111122222 4568887653211
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+.+..+.|+++|.++..
T Consensus 210 ----~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 ----QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp --------TTGGGEEEEEEEEEE
T ss_pred ----hhHHHHHHHhcCCCEEEEE
Confidence 1235677899999998876
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.11 Score=45.67 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=58.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCCC-C--------CCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQP-F--------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~~-~--------~~~~fD~ 165 (257)
...+++|++||-+|||. |..+..+++. |..+|+++|.+++ ....+ +..+.+ + ....+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCE
Confidence 34568899999999876 6777777775 5447999998865 12222 221111 0 1124777
Q ss_pred HHHHH-h---------hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNV-F---------DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~-l---------~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-.+ - .|..++...+++..+.|++||.+++.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 65421 1 23345556889999999999998764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.12 Score=44.27 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=51.9
Q ss_pred HhhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHH
Q 025148 104 RKKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFE 166 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V 166 (257)
....++++++||-+|+| .|..+..+++...++|+++|.+++.... ...|..+..+ ....+|+|
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvv 217 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAA 217 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEE
Confidence 34556889999999997 3666666666433499999998773211 0112111111 11246665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.++- . ....+..+.|++||.+++.-
T Consensus 218 id~~g----~--~~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 218 IDSIG----G--PDGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EESSC----H--HHHHHHHHTEEEEEEEEECC
T ss_pred EECCC----C--hhHHHHHHHhcCCCEEEEEe
Confidence 44211 1 12234458999999988753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.049 Score=47.22 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=52.3
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecC---CCC-----CCCCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDF---HRQ-----PFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~---~~~-----~~~~~~fD~ 165 (257)
...+++|++||-+|+|. |..+..+++. |..+|+++|.+++.. .++..+. .+. ...++.+|+
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCE
Confidence 44568899999999875 6677777764 444899999886521 1121110 000 000022444
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-. ... ...++...+.|++||.+++.
T Consensus 246 vid~----~g~-~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 246 TIEC----TGA-EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp EEEC----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred EEEC----CCC-hHHHHHHHHHhcCCCEEEEE
Confidence 4322 211 24678889999999998874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.28 Score=42.73 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCC--CC-------CCCCchh
Q 025148 103 KRKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHR--QP-------FDDETFD 164 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~--~~-------~~~~~fD 164 (257)
.....++++++||-+|+|. |..+..+++. |..+|+++|.+++.... ...|..+ .. ..++.+|
T Consensus 186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D 265 (378)
T 3uko_A 186 WNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVD 265 (378)
T ss_dssp HTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCC
Confidence 3345568899999999864 6666666664 55589999998872111 0111110 00 0112355
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+|+-. ... ...++...+.|++| |.+++.
T Consensus 266 ~vid~----~g~-~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 266 YSFEC----IGN-VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp EEEEC----SCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEEEC----CCC-HHHHHHHHHHhhccCCEEEEE
Confidence 54332 222 25678899999997 998875
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.24 Score=43.13 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=55.3
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------C-cEEEecCCCCC----------CCCCc
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------P-LVIEGDFHRQP----------FDDET 162 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~-~~~~~d~~~~~----------~~~~~ 162 (257)
....+++|++||-+|+|. |..+..+++. |..+|+++|.+++. . .++ |..+.. ..++.
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV--DPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE--CTTSSCHHHHHHSTTSSSTTC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE--CCCCcCHHHHHHhhhhccCCC
Confidence 345578899999999865 6666667764 54489999988651 1 122 111110 11235
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+|+-.+ . -...++.+.+.|++||.+++.
T Consensus 254 ~Dvvid~~----G-~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 254 VDVVIECA----G-VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEEEEECS----C-CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECC----C-CHHHHHHHHHHhccCCEEEEE
Confidence 67665431 1 125788899999999998875
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.081 Score=45.98 Aligned_cols=88 Identities=9% Similarity=-0.083 Sum_probs=54.0
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCC--------C-cEEEecCCCCC------CCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYP--------P-LVIEGDFHRQP------FDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~--------~-~~~~~d~~~~~------~~~~~fD~V~~ 168 (257)
...+++|++||-+|+|. |..+..+++....+|+++|.+++. . .++..+..++. .....+|+|+.
T Consensus 184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 184 KGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp TTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 44568899999999775 666666776544599999988651 1 22221101100 01224666544
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+- ...++...+.|++||.+++.-
T Consensus 264 ~~g------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 264 IAG------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp ETT------SSCHHHHHHHEEEEEEEEEEC
T ss_pred CCC------hHHHHHHHHHhhcCCEEEEEe
Confidence 321 135677889999999988763
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.25 E-value=0.12 Score=40.57 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=49.3
Q ss_pred hcCCCCCeEEEECCC--CCHHHHHHHH-cCCCcEEEecCCCCC--------CcEEEecCCCCC--------CCCCchhHH
Q 025148 106 KLLSNESKALCIGAR--VGQEVEALKR-VGVSDSVGIDLVPYP--------PLVIEGDFHRQP--------FDDETFDFE 166 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG--~G~~~~~l~~-~~~~~v~gvD~s~~~--------~~~~~~d~~~~~--------~~~~~fD~V 166 (257)
..++++++||..|++ .|..+..++. .| .+|+++|.+++. ... ..|..+.. ...+.+|++
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEE
Confidence 346788999999953 3444444444 35 489999987541 111 11222111 011235555
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++ . ...+++..+.|++||.+++.
T Consensus 112 i~~~----g--~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 112 LNSL----A--GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp EECC----C--THHHHHHHHTEEEEEEEEEC
T ss_pred EECC----c--hHHHHHHHHHhccCCEEEEE
Confidence 4432 1 25678899999999998875
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.19 E-value=0.11 Score=44.74 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=54.2
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------C-cEEEecCCCCCC--------CCCchh
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------P-LVIEGDFHRQPF--------DDETFD 164 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~-~~~~~d~~~~~~--------~~~~fD 164 (257)
....++++++||-+|+|. |..+..+++. |..+|+++|.+++. . .++ |..+..+ ....+|
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII--NYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE--CGGGSCHHHHHHHHTTTCCEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE--cCCCcCHHHHHHHHcCCCCCC
Confidence 345568899999999875 6667777775 44489999988652 1 122 1111110 112356
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+-. ... ...+++..+.|++||.+++.
T Consensus 238 ~v~d~----~g~-~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 238 KVVIA----GGD-VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EEEEC----SSC-TTHHHHHHHHEEEEEEEEEC
T ss_pred EEEEC----CCC-hHHHHHHHHHHhcCCEEEEe
Confidence 55432 111 14678889999999998865
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.13 Score=45.24 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCC--------CCCchhHHHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
.+++|+-||.|.++..+.+.|...+.++|+++. ...++++|+.++.. ....+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 589999999999999998888756789999866 34567788877632 2356888753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.09 Score=45.11 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=53.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCC------CCchhHHHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFD------DETFDFEFSNV 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~------~~~fD~V~~~~ 170 (257)
...++++++||-+|+|. |..+..+++.-..+|+++|.+++.... ...|..+..+. .+.+|+|+-.
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~- 239 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVT- 239 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEES-
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEe-
Confidence 44568899999999976 778888887544599999988662111 01111111100 0123333221
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. -...++.+.+.|++||.+++.
T Consensus 240 ---~g-~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 240 ---AV-SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ---SC-CHHHHHHHHHHEEEEEEEEEC
T ss_pred ---CC-CHHHHHHHHHHhccCCEEEEe
Confidence 11 235788899999999998875
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.85 E-value=0.33 Score=42.17 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=52.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++.... ...|..+ ..+ .++.+|+|
T Consensus 187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~v 266 (374)
T 1cdo_A 187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFS 266 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEE
Confidence 44567899999999864 5666666664 44379999988763211 1112111 000 00124443
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+. .... ...++...+.|++| |.+++.
T Consensus 267 id----~~g~-~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 267 LE----CVGN-VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp EE----CSCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EE----CCCC-HHHHHHHHHHhhcCCcEEEEE
Confidence 32 2211 25678899999999 998764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.3 Score=46.23 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=43.3
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..+|.++.+.+.--.+| .+++..+.++++|||.+.-.. ....+++.+.+.|+. +....||
T Consensus 170 ~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~---------------~~~~vr~~l~~aGf~-~~~~~~~ 233 (689)
T 3pvc_A 170 NQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT---------------AAGFVRRGLQQAGFN-VTKVKGF 233 (689)
T ss_dssp TCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC---------------CCHHHHHHHHHTTCE-EEEEECS
T ss_pred CceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc---------------CcHHHHHHHHhCCeE-EEeccCC
Confidence 55777766533322233 578999999999999866432 345778888999985 5555666
Q ss_pred CCceEE
Q 025148 237 GLDTEV 242 (257)
Q Consensus 237 ~~~~~v 242 (257)
+-..+.
T Consensus 234 ~~k~~~ 239 (689)
T 3pvc_A 234 GQKREM 239 (689)
T ss_dssp SSSCEE
T ss_pred Cccccc
Confidence 655444
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.72 E-value=0.35 Score=41.34 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++. ....+|+.|||.-||+|..+....+.+. +.+|+|+++.
T Consensus 240 ~l~~~~i~-~~~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~ 285 (323)
T 1boo_A 240 KLPEFFIR-MLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPE 285 (323)
T ss_dssp HHHHHHHH-HHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHHHH-HhCCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHH
Confidence 34444443 2347889999999999999999888775 9999999875
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.37 Score=41.49 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=52.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCC--------C-cEEEecCCC-CCC--------C---CCc
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYP--------P-LVIEGDFHR-QPF--------D---DET 162 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~--------~-~~~~~d~~~-~~~--------~---~~~ 162 (257)
...++++++||-+|+|. |..+..+++.-..+|+++|.+++. . .++ |..+ ..+ . .+.
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~--~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTL--VVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE--ECCTTTSCHHHHHHHHHHHSSSC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEE--cCcccccHHHHHHHHhccccCCC
Confidence 44568899999999865 666666666433479999988652 1 122 1111 110 0 123
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+|+.. ... ...++...+.|+++|.+++.
T Consensus 241 ~D~vid~----~g~-~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 241 PNVTIDC----SGN-EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp CSEEEEC----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEEC----CCC-HHHHHHHHHHHhcCCEEEEE
Confidence 5554332 111 24678889999999998875
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.14 Score=43.86 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcEE--------EecCCCCCC-------C
Q 025148 97 KFFDDLKRKKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLVI--------EGDFHRQPF-------D 159 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~~--------~~d~~~~~~-------~ 159 (257)
..+..+.....++++++||-.||+ .|..+..+++....+|+++|.+++..... ..|..+..+ .
T Consensus 136 tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 136 TAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKREC 215 (336)
T ss_dssp HHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhc
Confidence 334444345567889999999983 36666666664344999999876521111 112111110 0
Q ss_pred CCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 160 DETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 160 ~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+.+|+|+.++ . ...++...+.|++||.+++.
T Consensus 216 ~~~~d~vi~~~----g--~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 216 PKGIDVFFDNV----G--GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp TTCEEEEEESS----C--HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEECC----C--cchHHHHHHHHhhCCEEEEE
Confidence 12355544321 1 14678889999999998875
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=89.43 E-value=0.33 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCCCeEEEECCCCCHHHHHHH-Hc-C-CCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALK-RV-G-VSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~-~~-~-~~~v~gvD~s~~ 144 (257)
+++..++|+||+.|..+..++ +. + .++|+++|.++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~ 263 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI 263 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 678899999999999999887 43 3 369999999976
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=89.06 E-value=0.41 Score=41.54 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=52.4
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++..... ..|..+ ..+ .++.+|+|
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~v 265 (374)
T 2jhf_A 186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFS 265 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEE
Confidence 44568899999999865 5666666664 433799999887632111 111111 000 01134444
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+.. ... ...++...+.|+++ |.+++.
T Consensus 266 id~----~g~-~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 266 FEV----IGR-LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp EEC----SCC-HHHHHHHHHHBCTTTCEEEEC
T ss_pred EEC----CCC-HHHHHHHHHHhhcCCcEEEEe
Confidence 322 211 25678889999999 998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=0.34 Score=42.06 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=52.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++..... ..|..+ ..+ .++.+|+|
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvv 265 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYA 265 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 44568899999999865 5666666664 544899999887632110 111111 000 01134544
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+-. ... ...++...+.|+++ |.+++.
T Consensus 266 id~----~g~-~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 266 VEC----AGR-IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp EEC----SCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEC----CCC-HHHHHHHHHHHhcCCCEEEEE
Confidence 332 211 25678889999999 998764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.68 E-value=0.47 Score=41.12 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=51.3
Q ss_pred CCCeEEEEC-CCC-CHHHHHHHHc-CCCcEEEecCCCCCC--------cEEEecCCC-C-----CCCCCchhHHHHHHhh
Q 025148 110 NESKALCIG-ARV-GQEVEALKRV-GVSDSVGIDLVPYPP--------LVIEGDFHR-Q-----PFDDETFDFEFSNVFD 172 (257)
Q Consensus 110 ~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~gvD~s~~~~--------~~~~~d~~~-~-----~~~~~~fD~V~~~~l~ 172 (257)
++++||=+| +|. |..+..+++. +..+|+++|.+++.. ..+ .|..+ . ....+.+|+|+..+-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~v-i~~~~~~~~~v~~~~~~g~Dvvid~~g- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV-IDHSKPLAAEVAALGLGAPAFVFSTTH- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEE-ECTTSCHHHHHHTTCSCCEEEEEECSC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHhcCCCceEEEECCC-
Confidence 788999998 554 7777888875 667999999986511 111 11111 0 011234555543211
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
-...++++.+.|++||.+++.
T Consensus 249 ----~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 ----TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ----HHHHHHHHHHHSCTTCEEEEC
T ss_pred ----chhhHHHHHHHhcCCCEEEEE
Confidence 225778899999999999875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.13 Score=43.91 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=50.6
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCc-------EEEecCCC-CCC-------CCCchhHHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPL-------VIEGDFHR-QPF-------DDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~-------~~~~d~~~-~~~-------~~~~fD~V~ 167 (257)
...++++++||-.|| |.|..+..++.....+|+++|.+++... ....|..+ ..+ ..+.+|+++
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi 219 (333)
T 1v3u_A 140 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYF 219 (333)
T ss_dssp TSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred hhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEE
Confidence 345678999999998 3455555555533349999998754110 01122222 110 012355554
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- . ..+++..+.|++||.+++.
T Consensus 220 ~~~g----~--~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 220 DNVG----G--EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp ESSC----H--HHHHHHHTTEEEEEEEEEC
T ss_pred ECCC----h--HHHHHHHHHHhcCCEEEEE
Confidence 4321 1 3578888999999998764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=0.44 Score=41.38 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=52.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++..... ..|..+ ..+ .++.+|+|
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvv 269 (376)
T 1e3i_A 190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS 269 (376)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEE
Confidence 44567899999999864 5666666664 444899999887632111 111111 000 00124443
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+- .... ...+++..+.|++| |.+++.
T Consensus 270 id----~~G~-~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 270 LD----CAGT-AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp EE----SSCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EE----CCCC-HHHHHHHHHHhhcCCCEEEEE
Confidence 32 2221 25678899999999 998764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=0.31 Score=45.93 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=46.5
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..||+++.+.+..-.+| .++++.+.+.++|||.+.-.. ....+++.+.+.||. +....|+
T Consensus 178 ~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~---------------~~~~vr~~L~~aGf~-v~~~~~~ 241 (676)
T 3ps9_A 178 QKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT---------------SAGFVRRGLQDAGFT-MQKRKGF 241 (676)
T ss_dssp TCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC---------------CCHHHHHHHHHHTCE-EEEEECS
T ss_pred CcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc---------------CcHHHHHHHHhCCeE-EEecccc
Confidence 56888776654433344 468899999999999876533 245778888889985 4556677
Q ss_pred CCceEEEE
Q 025148 237 GLDTEVVF 244 (257)
Q Consensus 237 ~~~~~vv~ 244 (257)
+-..++..
T Consensus 242 g~krem~~ 249 (676)
T 3ps9_A 242 GRKREMLC 249 (676)
T ss_dssp TTCCEEEE
T ss_pred ccchhhhh
Confidence 65555443
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.65 Score=39.55 Aligned_cols=117 Identities=10% Similarity=0.034 Sum_probs=71.7
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------CCcEEEecCCCCCCCC----Cchh-----
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDD----ETFD----- 164 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~----~~fD----- 164 (257)
..|+++|||-=.....+.......++-+|. |. ...++.+|+.+ .+.+ ..||
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 579999999877766655322357888883 22 23466777765 3211 2233
Q ss_pred HHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCc-----------CcCC-----------CCCcC-C-hhH
Q 025148 165 FEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRA-----------DKYS-----------ANDLF-S-VKP 217 (257)
Q Consensus 165 ~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----------~~y~-----------~~~~~-~-~~~ 217 (257)
++++ .+++++. +...+++.+...+.||+.+++.....+.. ..+. .-.++ + .++
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 261 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV 261 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHH
Confidence 2344 4777776 34567888888888999999986432100 1111 11122 4 678
Q ss_pred HHHhcccCCcEEE
Q 025148 218 LVKLFKRSEMVRV 230 (257)
Q Consensus 218 ~~~~f~~~~~~~~ 230 (257)
+.++|.+.||..+
T Consensus 262 ~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 262 VADWLNRHGWRAT 274 (310)
T ss_dssp HHHHHTTTTEEEE
T ss_pred HHHHHHHCcCccc
Confidence 8889998888766
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.2 Score=43.12 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=52.8
Q ss_pred HhhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCC------CCCCchhHH
Q 025148 104 RKKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQP------FDDETFDFE 166 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~------~~~~~fD~V 166 (257)
....++++++||-+|+ |.|..+..+++....+|+++|.+++.. .++..+ .+.. .....+|+|
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvv 231 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMV 231 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEE
Confidence 3455688999999998 336666666665345999999887621 122111 1110 111246665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++- . ..++...+.|++||.+++.
T Consensus 232 id~~g----~--~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 232 VDPIG----G--PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EESCC--------CHHHHHHTEEEEEEEEEC
T ss_pred EECCc----h--hHHHHHHHhhcCCCEEEEE
Confidence 54311 1 2567888999999998875
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.98 E-value=0.64 Score=39.72 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~ 143 (257)
.++..++.. ...+++.|||.=||+|..+....+.+. +.+|+|+++
T Consensus 230 ~l~~~~i~~-~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~ 274 (319)
T 1eg2_A 230 AVIERLVRA-LSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAP 274 (319)
T ss_dssp HHHHHHHHH-HSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESST
T ss_pred HHHHHHHHH-hCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCc
Confidence 444454433 347889999999999999999888775 999999987
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=0.41 Score=41.49 Aligned_cols=88 Identities=22% Similarity=0.179 Sum_probs=52.4
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. |..+|+++|.+++.... ...|..+ ..+ .++.+|+|
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~v 264 (373)
T 2fzw_A 185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYS 264 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEE
Confidence 44568899999999865 5666666664 54489999988763211 0111111 000 01134554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+.. ... ...+++..+.|+++ |.+++.
T Consensus 265 id~----~g~-~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 265 FEC----IGN-VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp EEC----SCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEC----CCc-HHHHHHHHHhhccCCcEEEEE
Confidence 332 111 25678889999999 998864
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.84 E-value=0.064 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...+.+++++|+|||||.+++.+..
T Consensus 62 ~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 62 WFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHCcCCcEEEEEECC
Confidence 4567889999999999999998753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=86.94 E-value=1 Score=38.74 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=52.6
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE--------EEecCCCC---C--------CCCCc
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV--------IEGDFHRQ---P--------FDDET 162 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~--------~~~d~~~~---~--------~~~~~ 162 (257)
....+++|++||-+|+|. |..+..+++. |...|+++|.+++.... +....... . .....
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g 252 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIE 252 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCC
Confidence 345578899999999865 6666777775 54349999988652111 11000000 0 01123
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+|+-. ... ...++...+.|++||.+++.
T Consensus 253 ~Dvvid~----~g~-~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 253 PAVALEC----TGV-ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CSEEEEC----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEEC----CCC-hHHHHHHHHHhcCCCEEEEE
Confidence 4443321 111 24678889999999998875
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=86.60 E-value=0.35 Score=41.38 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=50.5
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCCC------CchhHHHHHHhh
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFDD------ETFDFEFSNVFD 172 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~~------~~fD~V~~~~l~ 172 (257)
.++++++||-+|+|. |..+..+++....+|+++|.++..... ...|..+..+.+ +.+|+|+..
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~--- 237 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVT--- 237 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEES---
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEEC---
Confidence 467899999999964 566666666433599999988652111 111222111000 123433321
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
... ...++...+.|+++|.+++.
T Consensus 238 -~g~-~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 238 -AVS-KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp -SCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred -CCC-HHHHHHHHHHhhcCCEEEEe
Confidence 111 25678889999999998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=86.57 E-value=0.17 Score=43.50 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=52.0
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCCCCCC--------CCchhHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQPFD--------DETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~~~~--------~~~fD~V~ 167 (257)
.++++++||-+|+|. |..+..+++. +..+|+++|.+++.. .++.. .+ .+. ...+|+|+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~--~~-~~~~~v~~~t~g~g~d~v~ 244 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS--GA-GAADAIRELTGGQGATAVF 244 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEEC--ST-THHHHHHHHHGGGCEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcC--CC-cHHHHHHHHhCCCCCeEEE
Confidence 568899999999875 6667777764 567999999987621 12111 11 000 01233322
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.... ...++...+.|++||.+++.
T Consensus 245 ----d~~G~-~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 245 ----DFVGA-QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp ----ESSCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred ----ECCCC-HHHHHHHHHHHhcCCEEEEE
Confidence 22222 24788899999999998875
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.52 E-value=0.46 Score=41.79 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.8
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
.+++|++||=+|+|. |..+..+++. |..+|+++|.++.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~ 249 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV 249 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 467899999999865 5666666664 5448999998876
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.51 E-value=3.2 Score=31.62 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHH-
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFE- 166 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V- 166 (257)
..+.+... ..-.-.+-|||+|-|+|..-..|.+. +..+|+.+|-.-. .-.++.+|+.+. -+..
T Consensus 28 ~~L~~a~~-~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~t------L~~~~ 100 (174)
T 3iht_A 28 ACLEHAIA-QTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRET------LPATL 100 (174)
T ss_dssp HHHHHHHH-HTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHH------HHHHH
T ss_pred HHHHHHHH-HhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHH------HHHHH
Confidence 34444333 23344568999999999999999995 7779999996532 224455554432 1110
Q ss_pred --HH--HHhhccc----cHHH------HH-HHHHHhccCCcEEEEEec
Q 025148 167 --FS--NVFDHAL----YPDK------FV-MEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 --~~--~~l~h~~----~~~~------~l-~~~~r~LkpgG~l~i~~~ 199 (257)
+- .++-|.. ++++ .+ .-+..+|.|||+++-..|
T Consensus 101 ~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p 148 (174)
T 3iht_A 101 ERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR 148 (174)
T ss_dssp HHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 00 1344433 2221 12 346678999999887655
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.59 E-value=0.24 Score=42.72 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=50.3
Q ss_pred hhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHH
Q 025148 105 KKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~ 167 (257)
...++++++||-.|++ .|..+..+++....+|+++|.+++.... ...|..+..+ ....+|+|+
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi 244 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 244 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEE
Confidence 3456789999999983 3555555555433599999987651110 1112221110 112355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- ...+....+.|++||.+++.
T Consensus 245 ~~~G------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 245 EMLA------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp ESCH------HHHHHHHHHHEEEEEEEEEC
T ss_pred ECCC------hHHHHHHHHhccCCCEEEEE
Confidence 3311 13567888999999998874
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=85.22 E-value=0.32 Score=41.50 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=51.4
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
..++++++||-+|+ |.|..+..+++....+|+++|.+++.... ...|..+..+ ....+|+|+.
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEE
Confidence 35688999999995 33566666666444599999987651110 1111111110 1234666554
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++- . ..++...+.|++||.+++.
T Consensus 224 ~~g----~--~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 224 SVG----K--DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CCG----G--GGHHHHHHHEEEEEEEEEC
T ss_pred CCC----h--HHHHHHHHHhccCCEEEEE
Confidence 321 1 4577888999999998875
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=85.14 E-value=0.51 Score=40.72 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred CeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------CCcEEEecCCCCCC---CCCchhHHHH
Q 025148 112 SKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------PPLVIEGDFHRQPF---DDETFDFEFS 168 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------~~~~~~~d~~~~~~---~~~~fD~V~~ 168 (257)
.+++|+-||.|.+...+.+.| ...|+++|+++. ...++.+|+.++.. +...+|+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEE
Confidence 589999999999999998877 346899999876 23467788877642 1114777644
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=1 Score=38.80 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=50.8
Q ss_pred CCCC------CeEEEECCCC-CHHH-HHHH-HcCCCc-EEEecCCCC---CC--------cEEEecCCCCCCC-----CC
Q 025148 108 LSNE------SKALCIGARV-GQEV-EALK-RVGVSD-SVGIDLVPY---PP--------LVIEGDFHRQPFD-----DE 161 (257)
Q Consensus 108 ~~~~------~~vLDiGcG~-G~~~-~~l~-~~~~~~-v~gvD~s~~---~~--------~~~~~d~~~~~~~-----~~ 161 (257)
++++ ++||-+|+|. |..+ ..++ +.-..+ |+++|.+++ .. ..+ |..+..+. ++
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~~g 241 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDVYE 241 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHHSC
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHhCC
Confidence 4677 9999999854 6666 7777 643345 999999875 21 111 32221111 11
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+|+|+-. ... ...+++..+.|++||.+++.
T Consensus 242 g~Dvvid~----~g~-~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 242 QMDFIYEA----TGF-PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CEEEEEEC----SCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEC----CCC-hHHHHHHHHHHhcCCEEEEE
Confidence 35554432 222 24678889999999998875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=0.61 Score=40.30 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=52.4
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCC-------CCCchhHHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPF-------DDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~-------~~~~fD~V~ 167 (257)
...++++++||-+|+ |.|..+..+++....+|+++|.+++. .... .|..+..+ ..+.+|+|+
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~-~~~~~~~~~~~~~~~~~~g~D~vi 236 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRP-INYKTEPVGTVLKQEYPEGVDVVY 236 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTTSCHHHHHHHHCTTCEEEEE
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEE-EecCChhHHHHHHHhcCCCCCEEE
Confidence 345688999999993 45777777776534599999988641 1111 11111100 012355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ... ..++.+.+.|+++|.+++.-
T Consensus 237 d~----~g~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 237 ES----VGG--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EC----SCT--HHHHHHHHHEEEEEEEEECC
T ss_pred EC----CCH--HHHHHHHHHHhcCCEEEEEe
Confidence 32 212 47788999999999987753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=0.42 Score=40.89 Aligned_cols=87 Identities=16% Similarity=0.057 Sum_probs=51.0
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcE--------EEecCCCC-CCC-------CCchhHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLV--------IEGDFHRQ-PFD-------DETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~--------~~~d~~~~-~~~-------~~~fD~V 166 (257)
...++++++||-+|| |.|..+..+++....+|+++|.+++.... ...|..+. .+. .+.+|+|
T Consensus 150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~v 229 (345)
T 2j3h_A 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIY 229 (345)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEE
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEE
Confidence 345678999999998 34556556665433599999987541110 11122211 110 1235554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++ .. ..++...+.|++||.+++.
T Consensus 230 i~~~----g~--~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 230 FENV----GG--KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EESS----CH--HHHHHHHTTEEEEEEEEEC
T ss_pred EECC----CH--HHHHHHHHHHhcCCEEEEE
Confidence 4332 11 4678889999999998874
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=84.25 E-value=0.19 Score=42.29 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcEEE-------ecCCC-CCCCC--CchhHHHHHHhhccc
Q 025148 108 LSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLVIE-------GDFHR-QPFDD--ETFDFEFSNVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~-------~d~~~-~~~~~--~~fD~V~~~~l~h~~ 175 (257)
++++++||-+|+ |.|..+..+++....+|+++|.+++...... .|..+ ..+.+ +.+|+|+. ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-----~g 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-----VR 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-----CS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-----CC
Confidence 788999999998 3366666666643359999998766322110 11110 00000 23454443 22
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..++...+.|+++|.++..
T Consensus 198 ~--~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 198 G--KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp C--TTHHHHHTTEEEEEEEEEC
T ss_pred H--HHHHHHHHhhccCCEEEEE
Confidence 2 4678889999999998764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=83.73 E-value=0.96 Score=38.76 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=40.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCCCC-CchhHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPFDD-ETFDFEFS 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~~~-~~fD~V~~ 168 (257)
+.+++|+.||.|.+...+.+.|...+.++|+++.. .....+|+.++...+ ..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEE
Confidence 46899999999999999998887678899998651 011256666553211 24787644
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.64 E-value=0.11 Score=44.63 Aligned_cols=85 Identities=13% Similarity=0.021 Sum_probs=50.3
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcC--CCcEEEecCCCCCC---------cEEEecC-CCC--CCC-CCchhHHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVG--VSDSVGIDLVPYPP---------LVIEGDF-HRQ--PFD-DETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~~---------~~~~~d~-~~~--~~~-~~~fD~V~~~~ 170 (257)
.+ ++++||-+|+|. |..+..+++.. ..+|+++|.+++.. .++...- .+. ... ...+|+|+..+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~ 246 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLV 246 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECC
Confidence 45 899999999964 56666666643 45899999886521 1111000 000 000 11355554321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ...++...+.|++||.+++.
T Consensus 247 ----g~-~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 247 ----GT-EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp ----CC-HHHHHHHHHHEEEEEEEEEC
T ss_pred ----CC-hHHHHHHHHHhhcCCEEEEe
Confidence 11 24678889999999998764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.40 E-value=0.52 Score=40.34 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=51.6
Q ss_pred cCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCC--------CCCchhHHHH
Q 025148 107 LLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 107 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
.++++++||-+|+ |.|..+..+++....+|+++|.+++. .... .|..+..+ ....+|+|+.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHHHHhCCCCceEEEE
Confidence 4678899999998 45677767666433599999987652 1111 12221110 1124555544
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++- ...++.+.+.|+++|.+++.
T Consensus 242 ~~g------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 242 HTG------ALYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp SSC------SSSHHHHHHHEEEEEEEEES
T ss_pred CCC------HHHHHHHHHhhccCCEEEEE
Confidence 321 14577888999999988764
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.03 E-value=0.46 Score=40.32 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=50.5
Q ss_pred cCCCCC-eEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------C-cEEEecCC--C--CCCCCCchhHHHHHH
Q 025148 107 LLSNES-KALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------P-LVIEGDFH--R--QPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~-~~~~~d~~--~--~~~~~~~fD~V~~~~ 170 (257)
.++++. +||-+|+ |.|..+..+++...++|+++|.+++. . .++..+-. + .....+.+|+|+..+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~ 224 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 224 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECC
Confidence 456665 8999998 33666666766534589999988662 1 12211100 0 011223577765432
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
- . ..++...+.|++||.+++.
T Consensus 225 g----~--~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 225 G----G--RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp T----T--TTHHHHHHTEEEEEEEEEC
T ss_pred c----H--HHHHHHHHhhccCCEEEEE
Confidence 1 1 2567788999999998864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=82.72 E-value=0.3 Score=41.54 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=51.7
Q ss_pred hcCCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCC--------CCCCchhHH
Q 025148 106 KLLSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQP--------FDDETFDFE 166 (257)
Q Consensus 106 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~--------~~~~~fD~V 166 (257)
..++++++||-+|+ | .|..+..+++....+|+++|.+++.. .++ |..+.. .....+|+|
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~--~~~~~~~~~~~~~~~~~~g~Dvv 213 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETI--DYSHEDVAKRVLELTDGKKCPVV 213 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTTCCEEEE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE--eCCCccHHHHHHHHhCCCCceEE
Confidence 45688999999994 3 36666666664334999999876511 122 111111 111346665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.++- . ..+....+.|++||.+++.-
T Consensus 214 id~~g----~--~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 214 YDGVG----Q--DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EESSC----G--GGHHHHHTTEEEEEEEEECC
T ss_pred EECCC----h--HHHHHHHHHhcCCCEEEEEe
Confidence 54321 1 35677889999999988763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=0.26 Score=42.22 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=49.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCC-cEEEecCCCCCCcEE------EecCCCCCCC-------CCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVS-DSVGIDLVPYPPLVI------EGDFHRQPFD-------DETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~~------~~d~~~~~~~-------~~~fD~V~~~~ 170 (257)
..+ ++++||-+|+|. |..+..+++.... +|+++|.+++..... ..|..+..+. .+.+|+|+.
T Consensus 161 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid-- 237 (343)
T 2dq4_A 161 SGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLE-- 237 (343)
T ss_dssp TCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEE--
T ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEE--
Confidence 345 889999999854 5566666664344 899999886521111 1111110000 012333322
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.... ...+++..+.|+++|.+++.
T Consensus 238 --~~g~-~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 238 --FSGN-EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp --CSCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred --CCCC-HHHHHHHHHHHhcCCEEEEE
Confidence 2222 25678889999999988764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=0.44 Score=40.90 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=50.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
..+ ++++||-+|+|. |..+..+++. |..+|+++|.+++.... ...|..+..+ ....+|+|+.
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 345 889999999954 5556666664 43389999988652110 0112211110 0113555433
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .. ....++.+.+.|+++|.++..
T Consensus 243 ~----~g-~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 243 F----SG-APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp C----SC-CHHHHHHHHHHEEEEEEEEEC
T ss_pred C----CC-CHHHHHHHHHHHhcCCEEEEE
Confidence 2 11 125678889999999998765
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.29 E-value=0.1 Score=45.63 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=50.1
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEec---CCCC-----C-CCCCchhHHH
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGD---FHRQ-----P-FDDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d---~~~~-----~-~~~~~fD~V~ 167 (257)
+++|++||-+|+|. |..+..+++. |..+|+++|.+++.. .++..+ -.++ . .....+|+|+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 67899999999764 5566666664 425999999886521 112111 0000 0 0111355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
-. ... ...+++..+.|++||.+++.
T Consensus 273 d~----~g~-~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 273 EA----TGD-SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp EC----SSC-TTHHHHHHHHEEEEEEEEEC
T ss_pred EC----CCC-HHHHHHHHHHHhcCCEEEEE
Confidence 32 111 14678888999999998765
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=81.22 E-value=0.24 Score=42.57 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=50.7
Q ss_pred hcCCCCCeEEEECCCC--CHHHHHHHHcC-CCcEEEecCCCCCCcE-------EEecCCCCCC-------CC-CchhHHH
Q 025148 106 KLLSNESKALCIGARV--GQEVEALKRVG-VSDSVGIDLVPYPPLV-------IEGDFHRQPF-------DD-ETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~--G~~~~~l~~~~-~~~v~gvD~s~~~~~~-------~~~d~~~~~~-------~~-~~fD~V~ 167 (257)
..++++++||-.|+|. |..+..+++.. ..+|+++|.+++.... ...|..+... .+ +.+|+|+
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 245 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI 245 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEE
Confidence 4567899999999983 44444555432 4589999988652110 1112211110 11 2455554
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- ....++...+.|+++|.+++.
T Consensus 246 ~~~g-----~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 246 DLNN-----SEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp ESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred ECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 4311 124678888999999998774
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=80.97 E-value=0.2 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
....+.++.++|+|||.+++...
T Consensus 85 ~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 85 AKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEEcC
Confidence 34677889999999999999874
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=0.83 Score=38.58 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=49.3
Q ss_pred eEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCC--CCCCCCchhHHHHHHhhccccHHH
Q 025148 113 KALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHR--QPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 113 ~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~--~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
+||=+|+ |.|..+..+++.-..+|+++|.+++. ..++...-.+ .....+.+|+|+-.+ .. .
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~----g~--~ 222 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTV----GD--K 222 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESS----CH--H
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECC----Cc--H
Confidence 4999997 34677777777544599999988762 1122111111 112234577765432 21 3
Q ss_pred HHHHHHHhccCCcEEEEE
Q 025148 180 FVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~ 197 (257)
.+++..+.|+++|.+++.
T Consensus 223 ~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 223 VLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp HHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 788899999999998875
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=80.47 E-value=1.1 Score=37.57 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEE-EecCCCCCCCCCchhHHHHH-----Hhhc-c--c
Q 025148 118 GARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVI-EGDFHRQPFDDETFDFEFSN-----VFDH-A--L 175 (257)
Q Consensus 118 GcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~-~~d~~~~~~~~~~fD~V~~~-----~l~h-~--~ 175 (257)
.++.|.....+.+..+..|.-||..-. ...+. ..|+...+ ..+.+|+|+++ .-+| - .
T Consensus 149 ~~~~~~~~~~~~k~~g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~-~~~k~DvV~SDMApn~sGh~yqQC~ 227 (320)
T 2hwk_A 149 EHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPG-DVPKYDIIFVNVRTPYKYHHYQQCE 227 (320)
T ss_dssp CCCCCCCHHHHHTSSCSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCT-TSCCEEEEEEECCCCCCSCHHHHHH
T ss_pred ccCCCCHHHHHhhCCCcEEEEEecccccCCceeEeeccCCCceeecccccCCcc-ccCcCCEEEEcCCCCCCCccccccc
Confidence 467777777777765557777752211 12233 44554433 22669999885 3333 1 2
Q ss_pred cH----HHHHHHHHHhccCCcEEEEEec
Q 025148 176 YP----DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 ~~----~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|. .-++....++|+|||.+++-+.
T Consensus 228 DHarii~Lal~fA~~vLkPGGtfV~Kvy 255 (320)
T 2hwk_A 228 DHAIKLSMLTKKACLHLNPGGTCVSIGY 255 (320)
T ss_dssp HHHHHHHHTHHHHGGGEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 22 2345778899999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 257 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.004 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 35.6 bits (81), Expect = 0.004
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 153 FHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198
+D+ H P+ + ++ ++K GG +
Sbjct: 86 ATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.86 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.82 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.77 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.73 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.72 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.71 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.71 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.71 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.69 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.67 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.66 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.65 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.64 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.62 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.61 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.6 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.6 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.59 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.57 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.56 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.55 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.55 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.53 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.5 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.49 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.48 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.45 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.45 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.44 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.43 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.43 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.42 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.39 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.35 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.34 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.32 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.31 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.21 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.14 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.1 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.06 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.98 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.96 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.95 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.93 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.93 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.91 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.85 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.83 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.79 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.74 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.74 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.74 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.71 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.69 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.68 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.66 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.62 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.57 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.57 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.42 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.41 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.39 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.37 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.36 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.27 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.26 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.24 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.21 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.12 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.12 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.1 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.1 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.07 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.01 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.99 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.94 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.93 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.77 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.76 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.67 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.6 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.45 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.43 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.41 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.96 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.38 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.15 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.13 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.81 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.45 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.41 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.39 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.04 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.98 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.92 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.83 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.72 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.64 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.69 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.5 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.99 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.82 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.58 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.32 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.16 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.84 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.1 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.94 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.99 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.88 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.53 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.48 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 87.97 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 85.73 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.21 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.8 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 83.67 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 81.67 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.22 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.09 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.86 E-value=2.1e-22 Score=165.24 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=106.2
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchh
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD 164 (257)
..++....++++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.+.++|..++|+++++||
T Consensus 5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 3455566678999999999999999999998864 9999999964 46789999999999999999
Q ss_pred HHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-------------cCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 165 FEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-------------ADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 165 ~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
+|+| ++++|+.++.++++++.|+|||||++++..+.... ...+.....++..++.++++++||..+
T Consensus 84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 163 (231)
T d1vl5a_ 84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE 163 (231)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred cccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEE
Confidence 9998 59999999999999999999999999987543211 112333356788899999999998654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.84 E-value=2.4e-21 Score=164.13 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFD 159 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~ 159 (257)
..+...+.....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+.++|+.++|++
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccc
Confidence 3344444455667899999999999999999999864469999999965 467899999999999
Q ss_pred CCchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC----------cCCCCCcCChhHHHHhcccCCcE
Q 025148 160 DETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD----------KYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 160 ~~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----------~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+++||+|+| .+++|++++.++++++.|+|||||++++..+...... .+....+.+..++.+++.+.|+.
T Consensus 133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~ 212 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLV 212 (282)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEE
T ss_pred ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCc
Confidence 999999988 5999999999999999999999999999865322110 11122455788889999999997
Q ss_pred EEEEec
Q 025148 229 RVRKVD 234 (257)
Q Consensus 229 ~~~~~~ 234 (257)
.+...+
T Consensus 213 ~i~~~d 218 (282)
T d2o57a1 213 TLRTFS 218 (282)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 766553
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=2.9e-21 Score=159.18 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=104.3
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
++....+++|.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.+.++|+.++|+++++||+|
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence 4456667999999999999999999999876 49999999965 4778999999999999999999
Q ss_pred HH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-------------cCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 167 FS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-------------ADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 167 ~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+| .+++|+.++.++++++.|+|||||++++....... .+.......++..++..++.+.|+..
T Consensus 87 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~ 163 (234)
T d1xxla_ 87 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 163 (234)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEE
T ss_pred eeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCce
Confidence 98 59999999999999999999999999987532111 01112224457788999999999854
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=8.7e-21 Score=153.31 Aligned_cols=120 Identities=23% Similarity=0.392 Sum_probs=101.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDK 179 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~ 179 (257)
.++++|||||||+|.++..++ +++|+|+|+. ++.+.++|+.++++++++||+|+| .+++|+.++.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~ 109 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 109 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 456799999999999988773 5799999976 678999999999999999999999 59999999999
Q ss_pred HHHHHHHhccCCcEEEEEeccCCC------------cCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKR------------ADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~------------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++++++|+|||||.+++.+++... ...+....+++..++.++++++||..+...
T Consensus 110 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 110 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred chhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999876542 112223366799999999999999766543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=6.9e-20 Score=150.95 Aligned_cols=93 Identities=26% Similarity=0.330 Sum_probs=83.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH--HHhhccc
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS--NVFDHAL 175 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~--~~l~h~~ 175 (257)
.+.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ...++.+++.++++++++||+|+| ++++|++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 39 YLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred hcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 345778999999999999999998765 9999999976 345788999999999999999886 4999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+.++++++.|+|||||.+++++++
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 9999999999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.78 E-value=4.6e-20 Score=151.13 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=99.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
++++|||||||+|.++..+++.+. +|+|+|+|+. ++.++.+++.+.++ +++||+|+| ++++|+.++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~ 97 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDP 97 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCCH
Confidence 567999999999999999998775 8999999965 56788899988876 578999988 699999999
Q ss_pred HHHHHHHH-HhccCCcEEEEEeccCCCc--------------Cc-------CCCCCcCChhHHHHhcccCCcEEEE
Q 025148 178 DKFVMEIE-RTLKPGGVCVLHVALSKRA--------------DK-------YSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 178 ~~~l~~~~-r~LkpgG~l~i~~~~~~~~--------------~~-------y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
.++++++. ++|||||.+++.+|+.... .. ......|+.+++.+++.++|+..+.
T Consensus 98 ~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 98 VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 99999998 7999999999999864321 00 1122567899999999999997543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=6.8e-20 Score=149.12 Aligned_cols=93 Identities=26% Similarity=0.385 Sum_probs=82.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++++++|||||||+|.++..+++.+. +|+|+|+|+. .+..+.+|+.++++++++||+|+| +++
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred hcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 457788999999999999999999765 9999999965 467789999999999999999988 599
Q ss_pred hccc--cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 172 DHAL--YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 172 ~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+|+. ++.++++++.++|||||.+++..++
T Consensus 113 ~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9986 6778999999999999999998764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=9.3e-20 Score=151.09 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=101.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
+.....+.+|++|||||||+|..+..+++...++|+|+|+|+. ++.+..+|+.++ +++++||+
T Consensus 25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~ 103 (245)
T d1nkva_ 25 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDV 103 (245)
T ss_dssp HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEE
T ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeE
Confidence 4445557889999999999999999998864469999999965 367899999987 46889999
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------cCcC-CCCCcCChhHHHHhcccCCcEEE
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------ADKY-SANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~y-~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
|+| .+++|+.++.+++++++|+|||||++++..+.... .+.. ....+.+..++...+.+.|+..+
T Consensus 104 v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 104 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179 (245)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred EEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence 988 69999999999999999999999999998753211 1111 11135577888889999888544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.6e-20 Score=149.48 Aligned_cols=129 Identities=12% Similarity=0.161 Sum_probs=102.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.++.+|||||||+|.++..+++....+|+|+|+|+. .+.+.++|+.++++++++||+|++ .+++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 556799999999999999887665568999999976 247889999999999999999988 5999
Q ss_pred ccccHH--HHHHHHHHhccCCcEEEEEeccCCCcC---cCCCCCcCChhHHHHhcccCCcEEEEEe--cCCC
Q 025148 173 HALYPD--KFVMEIERTLKPGGVCVLHVALSKRAD---KYSANDLFSVKPLVKLFKRSEMVRVRKV--DGFG 237 (257)
Q Consensus 173 h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~---~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~gf~ 237 (257)
|+.+++ +++++++++|||||.+++..+...... .......++...+.++|+++||..+... .||.
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP 210 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLP 210 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCC
Confidence 998764 789999999999999999876443321 1222234578899999999999765544 3654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.73 E-value=9e-19 Score=146.07 Aligned_cols=135 Identities=19% Similarity=0.130 Sum_probs=102.7
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
+.......+.+|||+|||+|.++..++.....+|+++|+|+. .+.+.++++.++++++++||+|+|
T Consensus 86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQ 165 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEE
T ss_pred HhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEee
Confidence 333334567899999999999999887654458999999966 246789999999999999999988
Q ss_pred HHhhccccHH--HHHHHHHHhccCCcEEEEEeccCCCc----CcCCCCCcCChhHHHHhcccCCcEEEEEe--cCCC
Q 025148 169 NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRA----DKYSANDLFSVKPLVKLFKRSEMVRVRKV--DGFG 237 (257)
Q Consensus 169 ~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~----~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~gf~ 237 (257)
.+++|+.+++ +++++++++|||||.+++..+..... .........+...+.++|+++||..+... .||-
T Consensus 166 ~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~fP 242 (254)
T d1xtpa_ 166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWP 242 (254)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCC
T ss_pred ccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCCCC
Confidence 5999998764 78999999999999999976533221 11111133478899999999998766554 3553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.72 E-value=7.4e-18 Score=139.40 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=99.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH--HHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS--NVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~--~~l~ 172 (257)
.++++|||||||+|.++..+++.+. +|+|+|+|+. ++.++++|+.+++++ ++||+|+| ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeee
Confidence 4567999999999999999999875 9999999965 578899999998864 58999877 5888
Q ss_pred ccc---cHHHHHHHHHHhccCCcEEEEEeccCC--------C-----------cC--cCC--------------------
Q 025148 173 HAL---YPDKFVMEIERTLKPGGVCVLHVALSK--------R-----------AD--KYS-------------------- 208 (257)
Q Consensus 173 h~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~--------~-----------~~--~y~-------------------- 208 (257)
|+. ++.+++++++++|||||.+++.+.... . .| .+.
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEEEecCCceEE
Confidence 776 556689999999999999998753210 0 00 000
Q ss_pred -----CCCcCChhHHHHhcccCCcEEEEEecCCCC
Q 025148 209 -----ANDLFSVKPLVKLFKRSEMVRVRKVDGFGL 238 (257)
Q Consensus 209 -----~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~ 238 (257)
....|+.+++.+++++.||..+.....|..
T Consensus 194 ~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~ 228 (246)
T d1y8ca_ 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSN 228 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSS
T ss_pred EEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCC
Confidence 113468899999999999988877766653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=8.3e-18 Score=134.79 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=89.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
.+++|||||||+|..+..+++.+. +|+|+|+|+. .+.+...|+.+.++ +++||+|+| .+++|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 456999999999999999999875 9999999975 35677888888776 578999999 59999
Q ss_pred cccH--HHHHHHHHHhccCCcEEEEEeccCCCcCc--CCCCCcCChhHHHHhcccCCcEEEE
Q 025148 174 ALYP--DKFVMEIERTLKPGGVCVLHVALSKRADK--YSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 174 ~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++.. .++++++.++|||||++++.+......+. ....+.++..++.++|...++....
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~i~~~~ 169 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKYN 169 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHhCCCeEEEee
Confidence 9744 47999999999999999998653322111 1122445777888888654444333
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=6.6e-18 Score=139.71 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCc
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~ 162 (257)
.++..++......++.+|||||||+|..+..|++.+. +|+|+|+|+. ++.+.++|+.++++++ +
T Consensus 28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~ 105 (251)
T d1wzna1 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-E 105 (251)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-C
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhccccc-c
Confidence 4555556566667778999999999999999999875 9999999976 4789999999999874 7
Q ss_pred hhHHHH--HHhhccc--cHHHHHHHHHHhccCCcEEEEEec
Q 025148 163 FDFEFS--NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 163 fD~V~~--~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+|+| ++++|+. +..+++++++++|||||++++..+
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 999877 4777774 667899999999999999998753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.71 E-value=3.7e-18 Score=141.98 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC
Q 025148 94 VFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP 157 (257)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~ 157 (257)
.+.++....+.....+++.+|||||||+|..+..+++.+..+|+|+|+|+. ++.+.++|+...+
T Consensus 8 ~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~ 87 (252)
T d1ri5a_ 8 NANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 87 (252)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC
T ss_pred HHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc
Confidence 344555554555667889999999999999999998887778999999976 2557888987766
Q ss_pred C-CCCchhHHHHH-Hhhcccc----HHHHHHHHHHhccCCcEEEEEecc
Q 025148 158 F-DDETFDFEFSN-VFDHALY----PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 158 ~-~~~~fD~V~~~-~l~h~~~----~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+ .+++||+|+|. +++|+.+ ..++++++.++|||||++++.+++
T Consensus 88 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 88 MDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp CCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 5 46789999994 8998854 346889999999999999998764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.69 E-value=9.7e-18 Score=133.22 Aligned_cols=122 Identities=13% Similarity=0.033 Sum_probs=93.2
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCC
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHR 155 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~ 155 (257)
+....+.++.+|||+|||+|..+..|+++|. +|+|+|+|+. ...+..+|..+
T Consensus 13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 3444568899999999999999999999886 9999999955 23567778877
Q ss_pred CCC-CCCchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 156 QPF-DDETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 156 ~~~-~~~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
++. ...+||+|++ .+++|+. +...+++++.++|||||.+++.................+.+++.++|...
T Consensus 92 l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~ 165 (201)
T d1pjza_ 92 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGN 165 (201)
T ss_dssp STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSS
T ss_pred cccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCC
Confidence 753 3467999988 5888886 45678999999999999988876543332222333455788888888643
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.67 E-value=6.9e-17 Score=131.81 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=93.0
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...++++.+|||+|||+|..+..+++. +..+|+|+|+|+. .+.+..+|..+. +.+.+|+
T Consensus 34 ~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~~~~~d~ 111 (225)
T d1im8a_ 34 ERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EIKNASM 111 (225)
T ss_dssp HHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--CCCSEEE
T ss_pred HHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--cccccee
Confidence 334678899999999999999999873 5679999999976 233445555544 4567898
Q ss_pred HHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCC-----------------cCcCCC-------------CCc
Q 025148 166 EFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKR-----------------ADKYSA-------------NDL 212 (257)
Q Consensus 166 V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------------~~~y~~-------------~~~ 212 (257)
|+| .+++|+. ++.+++++++|+|||||.+++..+.... ...+.. ...
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRT 191 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCC
Confidence 888 4888874 7889999999999999999997542111 001111 133
Q ss_pred CChhHHHHhcccCCcEEEEEe
Q 025148 213 FSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 213 ~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++.+++..+++++||..+...
T Consensus 192 ~s~~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 192 DSIETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp CCHHHHHHHHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCceEEe
Confidence 578888999999999877654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=4.1e-17 Score=136.88 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHH
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
.+...+......++.+|||||||+|.++..+++. +..+++|+|+|+. ++.+.++|+.++|+++++||+|
T Consensus 72 ~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v 151 (268)
T d1p91a_ 72 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI 151 (268)
T ss_dssp HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEE
Confidence 3334444555677889999999999999999986 4569999999976 6788999999999999999999
Q ss_pred HHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC
Q 025148 167 FSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR 203 (257)
Q Consensus 167 ~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 203 (257)
++. +.+| ++|+.|+|||||++++.+|+.+.
T Consensus 152 ~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 152 IRIYAPCK-------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp EEESCCCC-------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred eecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 884 6655 57899999999999999987553
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=1.2e-16 Score=135.26 Aligned_cols=132 Identities=17% Similarity=0.049 Sum_probs=97.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
+.+..++....+++|.+|||||||.|.++..+++...++|+|+++|++ .+.+...| .++.+
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---~~~~~ 124 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEFD 124 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGCC
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---ccccc
Confidence 345555567778999999999999999999998764469999999976 22333333 45567
Q ss_pred CchhHHHH-HHhhcccc---------HHHHHHHHHHhccCCcEEEEEeccCCC---------------------c--CcC
Q 025148 161 ETFDFEFS-NVFDHALY---------PDKFVMEIERTLKPGGVCVLHVALSKR---------------------A--DKY 207 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~~---------~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------------~--~~y 207 (257)
++||.|+| .+++|+.+ ...+++++.++|||||++++++-.... . ..+
T Consensus 125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiF 204 (291)
T d1kpia_ 125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 204 (291)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhc
Confidence 89999999 69999975 478999999999999999998632111 0 012
Q ss_pred CCCCcCChhHHHHhcccCCcEEEE
Q 025148 208 SANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
....+-+..++....++.||....
T Consensus 205 pgg~lps~~~~~~~~e~~gl~v~~ 228 (291)
T d1kpia_ 205 PGGRLPRISQVDYYSSNAGWKVER 228 (291)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCHHHHHhhhcccccccce
Confidence 222445778888888888876433
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.65 E-value=4.9e-17 Score=137.29 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||||||+|.++..+++. + ..+|+|+|+|+. ++.+.++|+.++++++ +||+|+| ++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~ 103 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAF 103 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESC
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehh
Confidence 466789999999999999999874 3 358999999965 3567899999988764 6999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++|+.+|.+++++++++|||||.+++..|.
T Consensus 104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 104 LLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999999999999999999998763
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.5e-16 Score=128.92 Aligned_cols=118 Identities=9% Similarity=-0.002 Sum_probs=92.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------------------CCcEEEecCC
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------------------PPLVIEGDFH 154 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------------------~~~~~~~d~~ 154 (257)
.+.++.+|||+|||+|..+..|++.|. +|+|+|+|+. .+.+.++|+.
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 356788999999999999999999886 9999999964 2456777877
Q ss_pred CC-CCCCCchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 155 RQ-PFDDETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 155 ~~-~~~~~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
++ +..++.||+|+. .+++|+. +.+.+++++.++|||||.+++.+............+.++..++.++|...
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~ 195 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKI 195 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTT
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCC
Confidence 76 356788999987 5888885 56788999999999999988877543322222223456888999999763
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=2.1e-16 Score=133.31 Aligned_cols=98 Identities=18% Similarity=0.109 Sum_probs=77.9
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~ 161 (257)
.+..++....+++|++|||||||+|.++..+++...++|+|+|+|++ .+.+...|..+. ++
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~ 116 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AE 116 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CC
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---cc
Confidence 34445555567999999999999999999998874469999999966 233444454433 46
Q ss_pred chhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+||.|+| .+++|+.+ ...++++++++|||||++++++
T Consensus 117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 8999988 69999964 4789999999999999999975
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=7e-16 Score=130.14 Aligned_cols=133 Identities=20% Similarity=0.154 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
+....++.+..+++|.+|||||||.|..+..+++.-+++|+|+++|+. .+.+..+|..+++
T Consensus 49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 125 (285)
T d1kpga_ 49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 125 (285)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence 344455556668999999999999999999988864479999999965 4566777776654
Q ss_pred CchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCC-------c----------------CcCCCCCcCC
Q 025148 161 ETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKR-------A----------------DKYSANDLFS 214 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~----------------~~y~~~~~~~ 214 (257)
++||.|+| .+++|+. +...+++++.|+|||||.+++++-.... . ..+....+-+
T Consensus 126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs 205 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 205 (285)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence 68999999 6999995 5588999999999999999987532110 0 0122223447
Q ss_pred hhHHHHhcccCCcEEEEE
Q 025148 215 VKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 215 ~~~~~~~f~~~~~~~~~~ 232 (257)
..++...+++.||.....
T Consensus 206 l~~~~~~~e~agf~v~~~ 223 (285)
T d1kpga_ 206 IPMVQECASANGFTVTRV 223 (285)
T ss_dssp HHHHHHHHHTTTCEEEEE
T ss_pred hhhHHHHHHHhchhhccc
Confidence 778888888888865443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=3e-16 Score=130.24 Aligned_cols=125 Identities=18% Similarity=0.303 Sum_probs=92.7
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...+++++|||+|||+|.++..+++.+ .+|+|+|+|+. ...+.++|..+ .+++++||+|++|.+
T Consensus 116 ~~~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~ 193 (254)
T d2nxca1 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY 193 (254)
T ss_dssp HHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC
T ss_pred hhcCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccc
Confidence 345789999999999999999988877 48999999987 34567777654 356788999998733
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
.+ ...++++++.++|||||+++++..... ....+.+.+.+.|+..+....--+ +..++++|
T Consensus 194 ~~--~l~~l~~~~~~~LkpGG~lilSgil~~-----------~~~~v~~~~~~~Gf~~~~~~~~~~-Wv~l~~~r 254 (254)
T d2nxca1 194 AE--LHAALAPRYREALVPGGRALLTGILKD-----------RAPLVREAMAGAGFRPLEEAAEGE-WVLLAYGR 254 (254)
T ss_dssp HH--HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------GHHHHHHHHHHTTCEEEEEEEETT-EEEEEEEC
T ss_pred cc--cHHHHHHHHHHhcCCCcEEEEEecchh-----------hHHHHHHHHHHCCCEEEEEEEECC-EEEEEEeC
Confidence 22 245678999999999999999743211 367788899999987666554212 34566664
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.1e-17 Score=136.07 Aligned_cols=123 Identities=12% Similarity=-0.027 Sum_probs=91.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcE----------------------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLV---------------------------------------- 148 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~---------------------------------------- 148 (257)
.++.+|||||||+|.++..++..+..+|+|+|+|+.++..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 5677999999999999877777665589999999762110
Q ss_pred -----E----EecCCCCCCCCCchhHHHH-HHhhccc----cHHHHHHHHHHhccCCcEEEEEeccCCC----cCcCCCC
Q 025148 149 -----I----EGDFHRQPFDDETFDFEFS-NVFDHAL----YPDKFVMEIERTLKPGGVCVLHVALSKR----ADKYSAN 210 (257)
Q Consensus 149 -----~----~~d~~~~~~~~~~fD~V~~-~~l~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~y~~~ 210 (257)
. ..+....++++++||+|++ .+++|+. ++..+++++.++|||||.+++..+.... .+.....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 0 1122223677889999988 5999995 5667899999999999999998765432 1111122
Q ss_pred CcCChhHHHHhcccCCcEEEE
Q 025148 211 DLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~~~ 231 (257)
..++.+++.++++++||..+.
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEE
Confidence 456899999999999997444
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=1.4e-16 Score=130.53 Aligned_cols=133 Identities=16% Similarity=0.194 Sum_probs=96.0
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCC-CCCCCchhHHHH-
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQ-PFDDETFDFEFS- 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~-~~~~~~fD~V~~- 168 (257)
...+++|++|||+|||+|..+..+++. +.+.|+|+|+|+. ++..+.+|.... ++.+..+|++++
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEee
Confidence 345689999999999999999999986 5679999999976 345566666554 355666777544
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCc
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLD 239 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~ 239 (257)
+.++|..+++.++.++++.|||||.+++.......... ...-...++..+.+++.||..+...+ +|.-+
T Consensus 149 ~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~--~~~~~~~~e~~~~L~~aGF~ive~idL~py~~~ 219 (230)
T d1g8sa_ 149 EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT--KDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKD 219 (230)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS--SCHHHHHHHHHHHHHHHTEEEEEEEECTTTSTT
T ss_pred ccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC--CCHHHHHHHHHHHHHHcCCEEEEEecCCCCcCC
Confidence 57778889999999999999999999987642211110 10011245667788889998777665 66544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.57 E-value=2.3e-15 Score=125.00 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=92.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
.+....+|||||||+|.++..+++. +..+++++|+.+. ++.++.+|+.+. .+ .+||+|++ +
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D~v~~~~ 154 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKADAIILSF 154 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCEEEEEEES
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cc-cchhheeecc
Confidence 3466789999999999999999985 6779999998532 467888888653 23 46999887 6
Q ss_pred HhhccccHH--HHHHHHHHhccCCcEEEEEeccCCCcCc--------------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRADK--------------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~--------------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++||+.+.+ +++++++++|||||.++|.......... ......++.+++.++++++||..+...
T Consensus 155 vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 155 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 999987654 6799999999999999987532111000 001133578999999999999765543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=1.6e-15 Score=120.96 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=75.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
.....++++|||+|||+|.++..+++.+ .+|+++|+|+. .+.+..+|..+ ++++++||+|+
T Consensus 47 ~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii 124 (194)
T d1dusa_ 47 NVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKII 124 (194)
T ss_dssp HCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEE
T ss_pred hCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEE
Confidence 3345778999999999999999998865 49999999965 35677888876 56788999999
Q ss_pred HH-Hhhcccc-HHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VFDHALY-PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l~h~~~-~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+ .+++..+ .+++++++.+.|||||.+++.+.
T Consensus 125 ~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 125 TNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp ECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 97 6665554 36789999999999999988764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.3e-15 Score=128.00 Aligned_cols=120 Identities=9% Similarity=0.032 Sum_probs=86.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----C--CCcEEEecCCCCC-------------Cc-----EEEecCC------CCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-----G--VSDSVGIDLVPYP-------------PL-----VIEGDFH------RQPF 158 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~--~~~v~gvD~s~~~-------------~~-----~~~~d~~------~~~~ 158 (257)
+..+|||||||+|.++..+++. + ..+++|+|+|+.. .. +...+++ ..+.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 3448999999999988776542 1 2368999998651 11 1222221 2356
Q ss_pred CCCchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------c-CcCC---CCCcCChhHHHHhcccC
Q 025148 159 DDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------A-DKYS---ANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 159 ~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~-~~y~---~~~~~~~~~~~~~f~~~ 225 (257)
++++||+|+| ++++|+.++.+++++++++|||||.+++.++.... . ..+. ...+++...+.+++.+.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 199 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 199 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence 7889999988 69999999999999999999999999998765432 1 1111 12456788899999998
Q ss_pred CcEE
Q 025148 226 EMVR 229 (257)
Q Consensus 226 ~~~~ 229 (257)
|+..
T Consensus 200 G~~~ 203 (280)
T d1jqea_ 200 GLKY 203 (280)
T ss_dssp TCCE
T ss_pred CCce
Confidence 8853
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=1.4e-15 Score=126.66 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=86.0
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC------------------CCcEEEecCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY------------------PPLVIEGDFHRQP 157 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~------------------~~~~~~~d~~~~~ 157 (257)
....++....+++|++|||+|||+|.++..|++. +.++|+++|++++ ++.+.++|+.+.+
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 3344445666799999999999999999999985 5679999999955 5677889999889
Q ss_pred CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 158 FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 158 ~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
+++++||.|+. |+++|++++.++.++|||||.+++.+|+..
T Consensus 164 ~~~~~fDaV~l----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 164 LPDGSVDRAVL----DMLAPWEVLDAVSRLLVAGGVLMVYVATVT 204 (264)
T ss_dssp CCTTCEEEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred ccCCCcceEEE----ecCCHHHHHHHHHhccCCCCEEEEEeCccC
Confidence 99999999864 688999999999999999999999988543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=1.4e-15 Score=125.73 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=89.8
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
.+....+++|++|||+|||+|.++..+++. +.++|+++|++++ ++.+..+|+.+. +++++|
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~f 155 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMY 155 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCE
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccccee
Confidence 344556799999999999999999999984 5679999999965 467788888765 567889
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|.|++ ++++|.+++.++.++|||||++++.+|+.. ........+++.||..+..
T Consensus 156 D~V~l----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~-----------Qv~~~~~~l~~~gf~~i~~ 209 (250)
T d1yb2a1 156 DAVIA----DIPDPWNHVQKIASMMKPGSVATFYLPNFD-----------QSEKTVLSLSASGMHHLET 209 (250)
T ss_dssp EEEEE----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH-----------HHHHHHHHSGGGTEEEEEE
T ss_pred eeeee----cCCchHHHHHHHHHhcCCCceEEEEeCCcC-----------hHHHHHHHHHHCCCceeEE
Confidence 99875 467889999999999999999999988532 3455666677788865543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.5e-16 Score=126.91 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=73.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCC--CCCCCCchhHHH----
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHR--QPFDDETFDFEF---- 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~--~~~~~~~fD~V~---- 167 (257)
..+|++|||||||+|..+..+++.+..+|+|||+|+. .+..+.++... .++++++||.|+
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4678899999999999999999876568999999976 22344444433 356788888875
Q ss_pred -H-HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 -S-NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 -~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ ..++|+.++..++++++|+|||||++++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 488999999999999999999999998753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=5e-15 Score=125.29 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC-------------------CcEEEecCCCCC---CCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP-------------------PLVIEGDFHRQP---FDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~-------------------~~~~~~d~~~~~---~~~~~fD~V 166 (257)
..+.+|||+|||+|..+..|++.+. +|+|+|+|+.+ ..+...+....+ ...++||+|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 3567999999999999999999875 99999999762 123334433221 134679998
Q ss_pred HH--HHhhcccc-------HHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FS--NVFDHALY-------PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~--~~l~h~~~-------~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+| ++++|+.+ ..+++++++|+|||||+|++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 76 48999864 45799999999999999999864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.7e-16 Score=128.00 Aligned_cols=123 Identities=16% Similarity=0.024 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCc-----------------------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPL----------------------------------------- 147 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~----------------------------------------- 147 (257)
..|.++||||||+|.+....+.....+|+|+|+|+.++.
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 457899999999998775555444458999999976211
Q ss_pred ----EEEecCCC------CCCCCCchhHHHH-HHhhccc----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----
Q 025148 148 ----VIEGDFHR------QPFDDETFDFEFS-NVFDHAL----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS---- 208 (257)
Q Consensus 148 ----~~~~d~~~------~~~~~~~fD~V~~-~~l~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~---- 208 (257)
....|+.. .+.++++||+|++ .+++|+. ++.++++++.++|||||.|++..+.........
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 12223322 2345678999988 5999985 567899999999999999999876433211100
Q ss_pred CCCcCChhHHHHhcccCCcEEEE
Q 025148 209 ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 209 ~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
....++.+++.+++++.||..+.
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEEE
Confidence 11346899999999999997544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=2.5e-15 Score=121.33 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=74.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHH-H-H
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEF-S-N 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~-~-~ 169 (257)
..+++|++|||+|||+|..+..+++. +.++|+|+|+|+. ++.++.+|....+.....+|.+. . +
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence 34689999999999999999999985 6679999999976 56677888877655554444431 1 3
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.|..++..++++++++|||||.+++..
T Consensus 132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 132 DIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 46677788899999999999999999876
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.49 E-value=5.1e-15 Score=117.27 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=77.6
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
++....+.++++|||+|||+|.++..+++.+ .+|+|+|+++. ++.++++|+.+...+.+.||+
T Consensus 25 il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~ 103 (186)
T d1l3ia_ 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDI 103 (186)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEE
T ss_pred HHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCE
Confidence 3344556889999999999999999998864 59999999966 467889998888777889999
Q ss_pred HHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++ ..+ +..++++++.+.|||||++++...
T Consensus 104 v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 104 AVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEESCCTT---CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEeCccc---cchHHHHHHHHHhCcCCEEEEEee
Confidence 9885 333 356789999999999999998764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.48 E-value=2.3e-14 Score=119.07 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+....+|||||||+|.++..+++. +..+++++|+.+. .+.+..+|..+ +.+. ++|+|++ ++
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~-~~D~v~~~~v 156 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 156 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-cccc-cchhhhcccc
Confidence 456679999999999999999985 6779999997422 45667777765 4444 5999877 69
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCc---------------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADK---------------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---------------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+||+.+. .+++++++++|||||+++|.......... ......++.+++.+++++.||..+...
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~ 236 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 236 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEE
Confidence 9998765 46799999999999999987542110000 011133578999999999999877665
Q ss_pred c
Q 025148 234 D 234 (257)
Q Consensus 234 ~ 234 (257)
.
T Consensus 237 ~ 237 (256)
T d1qzza2 237 T 237 (256)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.2e-14 Score=125.04 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEe
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEG 151 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~ 151 (257)
..+..++....++++++|||+|||+|..+..+++. +..+++|||+|+. ++.++++
T Consensus 138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 34455555666789999999999999999988875 5558999999964 4678999
Q ss_pred cCCCCCCCCCchh--HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 152 DFHRQPFDDETFD--FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 152 d~~~~~~~~~~fD--~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+.+.++.+..+| +|+++.+.|.++..+.+.++.|+|||||.+++..+
T Consensus 218 d~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 9999888877775 46667778888999999999999999999987543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=2.1e-14 Score=117.09 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=73.5
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCCC---CCCCCchhHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHRQ---PFDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~~---~~~~~~fD~V 166 (257)
...+++|++|||+|||+|..+..+++. +.++|+|+|+++. ++..+..|.... +.....+|+|
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEE
Confidence 334689999999999999999999985 4579999999976 344566666543 3344678887
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++ +.|..++..+++++.+.|||||.+++.+.
T Consensus 148 ~~d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 148 FED-VAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEE-ccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 764 44556788899999999999999998763
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=2.2e-14 Score=115.99 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=73.7
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhH
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
+....+++|++|||||||+|..+..+++. ..+.|+++|+++. ++.+.++|..+....+++||+
T Consensus 68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~ 147 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV 147 (213)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence 33445789999999999999999999875 3568999999976 556788888887777889999
Q ss_pred HHHH-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+++ +++|+++ ++.+.|||||++++.+
T Consensus 148 I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 148 IFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred hhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 9885 7887753 5678899999998855
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=4.5e-14 Score=120.80 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHh--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVF-- 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l-- 171 (257)
.++++|||||||+|.++..+++.|..+|+|+|.|+. .+.+++++..+++++.++||+|++..+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 467899999999999999999988778999999975 467889999999999999999988633
Q ss_pred --hccccHHHHHHHHHHhccCCcEEEE
Q 025148 172 --DHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 172 --~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.+-...+.++..+.|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 2333577899999999999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=4.9e-14 Score=121.14 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN---- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~---- 169 (257)
.++.+|||||||+|.++..+++.|..+|+|+|.|+. .+.++.+++.++++++++||+|+++
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 367899999999999999999988779999999964 4678899999999999999999885
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~ 195 (257)
.+.+......++.++.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 34444567788999999999999886
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=4.4e-14 Score=117.82 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
++....+++|++|||+|||+|.++..+++. +.++|+++|++++ .+.+...|+.. .++...|
T Consensus 95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~ 173 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDV 173 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSE
T ss_pred HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccce
Confidence 444566799999999999999999999885 4579999999977 23344444322 3445566
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|.| +.|+++|.++++++.++|||||.+++.+|... ..+.....+++.+|..+...
T Consensus 174 D~V----~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~-----------Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 174 DAL----FLDVPDPWNYIDKCWEALKGGGRFATVCPTTN-----------QVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp EEE----EECCSCGGGTHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHSSEEEEEEE
T ss_pred eee----EecCCCHHHHHHHHHhhcCCCCEEEEEeCccc-----------HHHHHHHHHHHCCceeEEEE
Confidence 665 46788999999999999999999999887433 34455666777788666544
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=9.2e-14 Score=118.50 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~ 172 (257)
..++.+|||||||+|.++..+++.|..+|+|+|.|+. .+.++.++..++++++++||+|+|+.+.
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 3578899999999999999999988779999999975 4678999999999999999999996333
Q ss_pred ccc----cHHHHHHHHHHhccCCcEEEE
Q 025148 173 HAL----YPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 173 h~~----~~~~~l~~~~r~LkpgG~l~i 196 (257)
|.. .++.++....+.|||||.++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 332 355677778899999999874
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=7.2e-14 Score=112.06 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHH-H
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSN-V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~-~ 170 (257)
.+..|||||||+|..+..+++. +...++|+|+++. ++.++.+|+..+. ++++++|.|+.. .
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 3458999999999999999985 7789999999865 6788999988764 788999987653 3
Q ss_pred hhccccH--------HHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYP--------DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~--------~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..|.... ..++++++|+|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3222211 479999999999999999987
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.5e-13 Score=116.07 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------------------CCcEEEe
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------------------PPLVIEG 151 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------------------~~~~~~~ 151 (257)
...+....+++|++|||+|||+|.++..|++. +.++|+++|++++ ++.+..+
T Consensus 88 ~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~ 167 (324)
T d2b25a1 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 167 (324)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence 33444556789999999999999999999985 4679999999854 4567778
Q ss_pred cCCCCC--CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 152 DFHRQP--FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 152 d~~~~~--~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+.+.. +++.+||.|+. .+++|.+++.++.++|||||++++.+|+
T Consensus 168 di~~~~~~~~~~~fD~V~L----D~p~P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVAL----DMLNPHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp CTTCCC-------EEEEEE----CSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred chhhcccccCCCCcceEee----cCcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence 877653 45678998765 4677889999999999999999998884
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.9e-13 Score=111.18 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=72.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD 164 (257)
.+++|++|||||||+|+.+..+++. +.++|+++|++++ ++.+..+|......++++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 4588999999999999999999885 3569999999965 34678889888888888999
Q ss_pred HHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 165 FEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 165 ~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.|+++ +++|++ .++.+.|||||++++.+.
T Consensus 153 ~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 153 AIHVGAAAPVVP------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEEECSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred hhhhhcchhhcC------HHHHhhcCCCcEEEEEEc
Confidence 99884 777765 357899999999999664
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=8.8e-13 Score=110.05 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=91.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.....+.+|||+|||+|.++..++. .+..+|+|+|+|+. ++.++++|..+ ++++++||+|+||
T Consensus 104 ~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN 182 (274)
T d2b3ta1 104 RLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSN 182 (274)
T ss_dssp HSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEEC
T ss_pred hhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEec
Confidence 3445677999999999999999987 47789999999976 46788888765 4567799999887
Q ss_pred --Hh------------hcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcc
Q 025148 170 --VF------------DHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFK 223 (257)
Q Consensus 170 --~l------------~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~ 223 (257)
.+ .|- ....++++++.+.|+|||.+++.+... ..+.+.+++.
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~------------q~~~v~~~l~ 250 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ------------QGEAVRQAFI 250 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS------------CHHHHHHHHH
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch------------HHHHHHHHHH
Confidence 21 111 123467889999999999999987321 3677888999
Q ss_pred cCCcEEEEEe-cCCCCceEEEE
Q 025148 224 RSEMVRVRKV-DGFGLDTEVVF 244 (257)
Q Consensus 224 ~~~~~~~~~~-~gf~~~~~vv~ 244 (257)
+.||..+... +-.+.++.++.
T Consensus 251 ~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 251 LAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp HTTCTTCCEEECTTSSEEEEEE
T ss_pred HCCCCeEEEEECCCCCceEEEE
Confidence 8888644333 34444455443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.31 E-value=8.2e-13 Score=105.79 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHHHh
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSNVF 171 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~l 171 (257)
.+..|||||||+|.++..+++. +...++|+|+++. ++.+..+|+.++. ++++++|.|+++.-
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 3458999999999999999985 7789999999965 6788999988764 67888888765321
Q ss_pred h------ccc---cHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 D------HAL---YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~------h~~---~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. |.. -...+++.+.++|||||.+.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 1 111 11578999999999999999987
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.28 E-value=7.8e-13 Score=107.29 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=71.1
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
....++++++|||||||+|+.+..|++.. .+|+++|+++. ++.++.+|......++++||.|++ .
T Consensus 64 ~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~ 142 (224)
T d1vbfa_ 64 DELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA 142 (224)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred HHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhc
Confidence 34457899999999999999999999875 49999999866 567888887765555688999877 4
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++++ ..+.+.|||||++++-+
T Consensus 143 a~~~ip------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 143 TAPTLL------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp BBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred chhhhh------HHHHHhcCCCCEEEEEE
Confidence 777665 34668899999999865
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.4e-11 Score=107.76 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCCC------------------------cE-EE
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYPP------------------------LV-IE 150 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~------------------------~~-~~ 150 (257)
.++..++.+..+++++++||||||+|..+..++.. +..+|+|||+++..+ .. ..
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 45556666677899999999999999999999875 656899999997611 01 12
Q ss_pred ecCCCCCCCC---CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 151 GDFHRQPFDD---ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 151 ~d~~~~~~~~---~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++..+.+..+ ...|+|+++.+.|.++....+.++.|.|||||.++..-
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred echhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 2222221111 11234444556677888899999999999999988753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.14 E-value=8.2e-11 Score=96.47 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=90.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhccccH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP- 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~- 177 (257)
....+|||||||+|.++..+++. +..+++..|+.+ ..+.++.+|+.+ +.+. .|++++ +++|+..+.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p~--~D~~~l~~vLh~~~de~ 156 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEK 156 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-cccc--ceEEEEehhhhhCCHHH
Confidence 55679999999999999999875 778999999753 267788888865 3443 498766 699988754
Q ss_pred -HHHHHHHHHhccCCcEEEEEecc---CCCcCc--------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 -DKFVMEIERTLKPGGVCVLHVAL---SKRADK--------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 -~~~l~~~~r~LkpgG~l~i~~~~---~~~~~~--------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++++++++.|+|||.++|.... ...... .....-++.+++.++++++||..++...
T Consensus 157 ~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 157 CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 231 (244)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEe
Confidence 46799999999999998887531 111000 0011234788999999999998777653
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.10 E-value=1.6e-11 Score=98.86 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=72.1
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
....++++.+|||||||+|+.+..+++.-..+|+++|.++. ++.+.++|..+...+++.||.|++
T Consensus 72 ~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv 151 (215)
T d1jg1a_ 72 EIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIV 151 (215)
T ss_dssp HHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred HhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEe
Confidence 34457899999999999999999999863358999999965 678999999887667889999877
Q ss_pred -HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 -NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 -~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+++++ .+...|||||++++-+
T Consensus 152 ~~a~~~ip~------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 152 TAGAPKIPE------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred ecccccCCH------HHHHhcCCCCEEEEEE
Confidence 46776653 2567899999999865
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.06 E-value=4e-11 Score=97.04 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=70.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc----C---CCcEEEecCCCC--------------------CCcEEEecCCCCCCC
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV----G---VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFD 159 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~----~---~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~ 159 (257)
.++++++|||||||+|+.+..+++. + ..+|+++|++++ ++.+..+|..+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 4678999999999999999888774 1 247999999865 467888998887767
Q ss_pred CCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 160 DETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 160 ~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++.||.|+++ .++++++ .+.+.|||||++++-+.
T Consensus 157 ~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp GCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence 7899998874 7776653 46789999999998663
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=5.8e-11 Score=101.40 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=73.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC----CCCCCchh
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ----PFDDETFD 164 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~----~~~~~~fD 164 (257)
....+++.+|||+|||+|.++..++..|..+|+++|+|+. .+.++++|+.+. +..+++||
T Consensus 140 ~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD 219 (324)
T d2as0a2 140 EKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 219 (324)
T ss_dssp GGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred HhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence 3445789999999999999999999887779999999976 346777876542 33567899
Q ss_pred HHHHH--Hh--------hccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 165 FEFSN--VF--------DHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 165 ~V~~~--~l--------~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+|+++ .+ ....+..+++..+.++|||||++++.++.
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99875 11 11223456788899999999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.96 E-value=9.9e-11 Score=92.64 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCCHHHHHH----HHc-----CCCcEEEecCCCC------------------------------------
Q 025148 110 NESKALCIGARVGQEVEAL----KRV-----GVSDSVGIDLVPY------------------------------------ 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l----~~~-----~~~~v~gvD~s~~------------------------------------ 144 (257)
+.-+|+++|||+|.-...+ .+. ...+|+|+|+++.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 3459999999999854333 332 1247999999955
Q ss_pred ----------CCcEEEecCCCC-CCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEE
Q 025148 145 ----------PPLVIEGDFHRQ-PFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 145 ----------~~~~~~~d~~~~-~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+.+...+.... +.+.+.||+|+| |++.++..+ .++++.+++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 112223333332 234578999999 899998865 57899999999999999885
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.95 E-value=1.5e-10 Score=95.68 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=70.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
.++|.+|||+|||+|.++..+++.+.++|+++|+|+. .+.++++|..+.+. .+.||.|+++..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 5789999999999999999999888779999999976 36788899888754 467998876522
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
....+++.++.+.||+||++.+..
T Consensus 184 ---~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 184 ---VRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ---CchHHHHHHHHhhcCCCCEEEEEe
Confidence 233467888899999999987653
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.93 E-value=2.3e-09 Score=87.61 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHH-HHHHhhccc--c
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFE-FSNVFDHAL--Y 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~--~ 176 (257)
....+|||||||+|.++..+++. +..++++.|+.+. ++.+..+|+.+ +.|.. |++ +.+++++.. +
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~a--d~~~l~~vlh~~~d~~ 156 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPKA--DAVFMKWICHDWSDEH 156 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCCC--SCEECSSSSTTSCHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCCc--ceEEEEEEeecCCHHH
Confidence 44578999999999999999985 7789999998644 56778888755 34443 443 446777665 4
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccC---CCcCc--------------CC-CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALS---KRADK--------------YS-ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~---~~~~~--------------y~-~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
..++++++++.|+|||.++|..... ..... .. ...-++.+++.++++++||..++..
T Consensus 157 ~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 157 CLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 5578999999999999988874321 11000 00 1133467889999999999777654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.93 E-value=1e-09 Score=90.94 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=84.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhHHHHH--Hh
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDFEFSN--VF 171 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~V~~~--~l 171 (257)
..+++|+|||+|..+..+++.+..+|+++|+|+. .+.+..++..+. +...++||+|+|| .+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 4589999999999999998888889999999977 234456666553 2234689999997 21
Q ss_pred ---hccc-----cHHH----------HHHH-HHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 ---DHAL-----YPDK----------FVME-IERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ---~h~~-----~~~~----------~l~~-~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+.++ +|.. ++++ +.+.|+|||++++.+... ..+.+.++|.+.||.
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~------------Q~~~v~~l~~~~g~~---- 254 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED------------QVEELKKIVSDTVFL---- 254 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT------------CHHHHTTTSTTCEEE----
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH------------HHHHHHHHHHhCCEE----
Confidence 1111 2322 2222 557899999999988422 367788889988873
Q ss_pred ecCCCCceEEEEEccc
Q 025148 233 VDGFGLDTEVVFRKNA 248 (257)
Q Consensus 233 ~~gf~~~~~vv~~k~~ 248 (257)
.+-.+.++.++++|+.
T Consensus 255 kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 255 KDSAGKYRFLLLNRRS 270 (271)
T ss_dssp ECTTSSEEEEEEECCC
T ss_pred eccCCCcEEEEEEEcC
Confidence 3444455788888754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.91 E-value=6.8e-11 Score=90.02 Aligned_cols=90 Identities=14% Similarity=0.025 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhHHHHHHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDFEFSNVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~V~~~~l~ 172 (257)
.|.+|||+|||+|.++..++.+|..+|+++|.++. .+.++++|.... +...++||+|+++-=.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 58899999999999999888888779999999966 356777777653 4556789999875100
Q ss_pred ccccHHHHHHHHH--HhccCCcEEEEEec
Q 025148 173 HALYPDKFVMEIE--RTLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~~~~~~l~~~~--r~LkpgG~l~i~~~ 199 (257)
.-......+..+. +.|+|||.++++.+
T Consensus 94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 94 AKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 0111223444443 57999999999864
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=1.4e-10 Score=98.75 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC----CCCCCchhHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ----PFDDETFDFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~----~~~~~~fD~V~~~- 169 (257)
+|.+|||++||+|.++..++. +..+|+++|+|+. ++.++++|..+. ....++||+|+++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 688999999999999998876 4459999999976 456777877553 3456789999875
Q ss_pred -H--------hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -V--------FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -~--------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. .....+..+++..+.++|||||.+++.++.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1 222234556888999999999999998764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.83 E-value=6.2e-09 Score=85.04 Aligned_cols=123 Identities=10% Similarity=0.082 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhccccHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~ 178 (257)
....+|||||||+|.++..+++. +..+++..|+.+ .++.++.+|+.+. .+ .+|+++. +++|+..+.+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~ 155 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKD 155 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHH
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHH
Confidence 34468999999999999999885 778999999753 2678889998763 33 4699766 7999888654
Q ss_pred --HHHHHHHHhccCC---cEEEEEecc---CCCc-------------CcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 179 --KFVMEIERTLKPG---GVCVLHVAL---SKRA-------------DKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 179 --~~l~~~~r~Lkpg---G~l~i~~~~---~~~~-------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++|+++++.|+|| |+++|.... .... .......-++.+++.++++++||..++...
T Consensus 156 ~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~ 232 (244)
T d1fp2a2 156 CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 232 (244)
T ss_dssp HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEE
Confidence 6889999999998 667665421 1110 001112345788999999999998766554
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.79 E-value=1.6e-09 Score=85.59 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.|++|||+|||+|.++..++..+..+|+|+|+++. .+.++++|+.+++ ++||+|++|
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 58899999999999998888888778999999976 5688999988764 679999987
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5.6e-09 Score=85.60 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC------CCCCCchhHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ------PFDDETFDFE 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~------~~~~~~fD~V 166 (257)
+..++||+|||+|.++..++.. +..+++|+|+++. .+.+...+.... ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3458999999999999998875 5679999999977 233444433322 1235689999
Q ss_pred HHH--Hhhcc----------------------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCC
Q 025148 167 FSN--VFDHA----------------------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSAN 210 (257)
Q Consensus 167 ~~~--~l~h~----------------------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~ 210 (257)
+|| .+..- ....+++++..+.++..|++...+...+
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~-------- 212 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKC-------- 212 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTT--------
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchh--------
Confidence 997 32100 0123456777888999999887774222
Q ss_pred CcCChhHHHHhcccCCcEEEEEe
Q 025148 211 DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.+.+.+++.+.|+..+...
T Consensus 213 ---~l~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 213 ---SLAPLKEELRIQGVPKVTYT 232 (250)
T ss_dssp ---SHHHHHHHHHHTTCSEEEEE
T ss_pred ---hHHHHHHHHHHcCCCeEEEE
Confidence 46788899999998765544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.74 E-value=1.3e-09 Score=92.49 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=71.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC----CCCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ----PFDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~----~~~~~~fD~V 166 (257)
+.+|.+|||+.||+|.++..++..|..+|+++|+|+. ++.++++|+.+. .-..++||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 4578999999999999999888877778999999987 345778887543 2245689999
Q ss_pred HHH--Hh--------hccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN--VF--------DHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~--~l--------~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ .+ .-..+..++++.+.++|+|||+++++++.
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 875 22 11224557888999999999999998864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.74 E-value=3.1e-09 Score=84.35 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
-.|.+|||+|||+|.++..++..|..+|+|+|+++. ...+..+|...+ ++.||+|++|
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence 367899999999999999888887779999999976 345677777664 4679999987
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=1.8e-09 Score=84.99 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=72.6
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCC-----CCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQ-----PFDDE 161 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~-----~~~~~ 161 (257)
.+......+++.+||++||+|..+..+.+. +.++|+|+|.++. ++.++++++.++ .+..+
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCS
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCC
Confidence 333445678999999999999999998885 6789999999966 456778877664 24456
Q ss_pred chhHHHHH------Hh----hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFSN------VF----DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~------~l----~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+||.|+.+ -+ ..+....+.+..+.++|+|||.+++.+
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 78876442 11 233455678899999999999998866
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=5.6e-09 Score=81.57 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC-CCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ-PFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~~~~~~fD~V~~~-~l~ 172 (257)
.+.+|||++||+|.++..++.+|..+|+.||.++. +..++.+|+.+. ...+.+||+|+++ -+.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 46799999999999999999888889999999966 445666665543 3456789999886 221
Q ss_pred ccccHHHHHHHHHH--hccCCcEEEEEec
Q 025148 173 HALYPDKFVMEIER--TLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~~~~~~l~~~~r--~LkpgG~l~i~~~ 199 (257)
.....+.+..+.+ +|+++|+++++..
T Consensus 123 -~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 -RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2234466666654 6999999999864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.68 E-value=2.2e-09 Score=83.01 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCC----CCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHR----QPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~----~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..++..|. +++++|.++. ...+...+... ....+++||+|+++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 46788999999999999998888775 8999999977 22333333321 12345679999876
Q ss_pred -HhhccccHHHHHHHH--HHhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEI--ERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~--~r~LkpgG~l~i~~~ 199 (257)
=+. . +..+.+.++ ...|+|||+++++.+
T Consensus 118 PPY~-~-~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PPYA-M-DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT-S-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccc-c-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 111 1 112333333 357999999999764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1.8e-08 Score=78.33 Aligned_cols=95 Identities=22% Similarity=0.295 Sum_probs=70.0
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHH-
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSN- 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~- 169 (257)
-.+++++.+|||+||++|.+++.+.+. ....++|+|+.+. ...++++|+.+.. ...+.+|+|+|+
T Consensus 17 ~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ 96 (180)
T d1ej0a_ 17 DKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp HCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred hCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecc
Confidence 345688999999999999999998874 4568999999876 4567788876532 234679998875
Q ss_pred --------Hhhcccc---HHHHHHHHHHhccCCcEEEEEec
Q 025148 170 --------VFDHALY---PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 --------~l~h~~~---~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+|... -...+.-+.++||+||.+++-+.
T Consensus 97 ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 1222221 12455677899999999999874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.62 E-value=1.6e-07 Score=74.56 Aligned_cols=94 Identities=24% Similarity=0.277 Sum_probs=66.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCCC------cEEEecCCCCCCCCCchhHHHHH-Hhhc----
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYPP------LVIEGDFHRQPFDDETFDFEFSN-VFDH---- 173 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~------~~~~~d~~~~~~~~~~fD~V~~~-~l~h---- 173 (257)
...++.+|||.|||+|.++..+.+. ...+++|+|+++... .++.+|...... ...||+|++| -+..
T Consensus 16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~ii~npP~~~~~~~ 94 (223)
T d2ih2a1 16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEA 94 (223)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCT
T ss_pred CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhcccc-ccccceecccCcccccccc
Confidence 3467889999999999998888764 345799999998732 445666655443 3568887765 1110
Q ss_pred -------------------------cccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 174 -------------------------ALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 174 -------------------------~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
..-...++....+.||+||.+++.+|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 95 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 0012356788899999999999998853
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=3.5e-09 Score=84.81 Aligned_cols=98 Identities=20% Similarity=0.351 Sum_probs=68.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC--
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-- 156 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-- 156 (257)
.++..++... +..+|||+|||+|..+..+++. ..++|+++|+++. .+.++.+|..+.
T Consensus 46 ~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~ 122 (214)
T d2cl5a1 46 QIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP 122 (214)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred HHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence 4444444433 4579999999999999999974 3569999999976 467788887653
Q ss_pred ----CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 157 ----PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 157 ----~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+..++||+|+.+.-+........+.+..+.|||||++++.
T Consensus 123 ~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 123 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp GHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred chhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEe
Confidence 23456799997753222222334567778899999987763
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.57 E-value=1.1e-08 Score=79.80 Aligned_cols=91 Identities=15% Similarity=-0.017 Sum_probs=67.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC----CCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ----PFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~----~~~~~~fD~V~~ 168 (257)
..+.+|||++||+|.++..++.+|..+|+++|.++. ++.+.++|+.+. .-...+||+|++
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 368899999999999999999998889999999966 356777776542 123457999988
Q ss_pred HHhhccccHHHHHHHHHH--hccCCcEEEEEec
Q 025148 169 NVFDHALYPDKFVMEIER--TLKPGGVCVLHVA 199 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r--~LkpgG~l~i~~~ 199 (257)
+-=.+..+..+.+..+.. .|++||+++++..
T Consensus 120 DPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 120 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred chhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 611112334566777654 6999999999874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.42 E-value=2.9e-07 Score=74.08 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=65.2
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCC----CCCCc-------EEEe-cCCC-CCCCCCch
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLV----PYPPL-------VIEG-DFHR-QPFDDETF 163 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s----~~~~~-------~~~~-d~~~-~~~~~~~f 163 (257)
-+.++..+..++++++|+|+|||.|.++..++++. ...|.|+|+- +.++. ++.. .-.+ ...+++..
T Consensus 54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 34455556678889999999999999999999763 3466666662 22110 0000 0011 12356789
Q ss_pred hHHHHHHhhccccH-------HHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYP-------DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~-------~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+|+.-++..++ .++++-+.++|+|||-+++-+
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence 99999743433322 246677789999999988876
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.41 E-value=1.4e-08 Score=84.28 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------CCcEEEecCCCCCCCCCc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------~~~~~~~d~~~~~~~~~~ 162 (257)
..+..+||.+|+|.|..+..+.+.+..+|+.+|+++. ++.++.+|....--.+++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3567899999999999999988876678999999965 235666666543223578
Q ss_pred hhHHHHHHhhcccc-----HHHHHHHHHHhccCCcEEEEEec
Q 025148 163 FDFEFSNVFDHALY-----PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 163 fD~V~~~~l~h~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+|+.+..+.... -.++++.+++.|+|||++++...
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 99998865544322 25789999999999999998763
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.9e-08 Score=77.71 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC------CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ------PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~------~~~~~~fD 164 (257)
...++|||||||+|.-+.++++. ..++++.+|.+++ .+.+..+|+.+. ...+++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 34679999999999999999984 3579999999977 356777776542 12356899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+.+.-. .+....++.+.+.|+|||++++.-
T Consensus 138 ~ifiD~dk--~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 138 VAVVDADK--ENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEECSCS--TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEeCCH--HHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99775211 133467788899999999999964
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.37 E-value=2.8e-08 Score=83.45 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC----CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ----PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~----~~~~~~fD~V~ 167 (257)
.++.+|||+.||+|.++..++..|. +|++||.|+. .+.++++|+.+. ....+.||+|+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 5678999999999999999988665 9999999965 346777777543 12346899998
Q ss_pred HH--Hhh--------ccc-cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--VFD--------HAL-YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~l~--------h~~-~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+- .+. +....++.+.++|+|||.+++.+.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 75 221 111 234566788899999998776653
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.36 E-value=5e-08 Score=79.46 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
....+....+.++++|||||||+|.++..|++.+. +|++||+++. ++.++++|+.+.+++...++.
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~ 96 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYK 96 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEE
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeee
Confidence 33444445567889999999999999999999865 9999999976 357889999999888777777
Q ss_pred HHHHHhhcccc
Q 025148 166 EFSNVFDHALY 176 (257)
Q Consensus 166 V~~~~l~h~~~ 176 (257)
|++|.=.|+..
T Consensus 97 vv~NLPY~Ist 107 (245)
T d1yuba_ 97 IVGNIPYHLST 107 (245)
T ss_dssp EEEECCSSSCH
T ss_pred EeeeeehhhhH
Confidence 77774444443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.27 E-value=2.7e-07 Score=78.14 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc------CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV------GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
+++.+|||.|||+|.++..+.+. ...+++|+|+++. ......+|..... ..++||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi~ 194 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVIS 194 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccccc
Confidence 56679999999999999887642 2347999999975 3455666655433 4567999998
Q ss_pred H-Hhhccc------------------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc-CCcE
Q 025148 169 N-VFDHAL------------------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR-SEMV 228 (257)
Q Consensus 169 ~-~l~h~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~-~~~~ 228 (257)
| -+.... -...+++.+.+.|+|||++++.+|..--. .. +...+++.+.+ ..+.
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~---~~----~~~~lR~~L~~~~~i~ 267 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG---TS----DFAKVDKFIKKNGHIE 267 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG---ST----THHHHHHHHHHHEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc---Cc----hhHHHHHHHHhCCcEE
Confidence 7 111110 12236899999999999999998854211 11 34556655444 4444
Q ss_pred EEEEec--CCC---Cc-eEEEEEccc
Q 025148 229 RVRKVD--GFG---LD-TEVVFRKNA 248 (257)
Q Consensus 229 ~~~~~~--gf~---~~-~~vv~~k~~ 248 (257)
.+.... -|. .. ..++++|+.
T Consensus 268 ~ii~lp~~~F~~~~~~t~ilvl~K~~ 293 (328)
T d2f8la1 268 GIIKLPETLFKSEQARKSILILEKAD 293 (328)
T ss_dssp EEEECCGGGSCC-CCCEEEEEEEECC
T ss_pred EEEECCccccCCCCCCeEEEEEECCC
Confidence 454432 122 12 356676654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.26 E-value=2.1e-07 Score=75.28 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
....+....+.++++|||||||+|.++..|++.+. +|+++|+++. ++.++.+|+.+.+++......
T Consensus 10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~ 88 (235)
T d1qama_ 10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK 88 (235)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE
T ss_pred HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccce
Confidence 33444444567899999999999999999999764 9999999855 578999999998876544334
Q ss_pred HHHH
Q 025148 166 EFSN 169 (257)
Q Consensus 166 V~~~ 169 (257)
|++|
T Consensus 89 vv~N 92 (235)
T d1qama_ 89 IFGN 92 (235)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5555
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=7.7e-08 Score=81.10 Aligned_cols=92 Identities=20% Similarity=0.334 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCC-CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQ-PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~-~~~~~~fD~ 165 (257)
.....+||.||.|.|..+..+.+. +..+|+++|+++. ++.++.+|..+. .-.+++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 356689999999999999998876 5669999999966 345666776653 223467999
Q ss_pred HHHHHhhcc--------ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHA--------LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~--------~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+.+..+.. ..-.++++.+++.|+|||++++.+.
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 987643211 1235799999999999999998763
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=2.3e-06 Score=67.54 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=71.6
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCch
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~f 163 (257)
..+.....+ ++.+++|+|+|.|.-+..++- .+..+++.+|.+.. ++.+++..+++.. .+.+|
T Consensus 56 DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~f 133 (207)
T d1jsxa_ 56 DSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPF 133 (207)
T ss_dssp HHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCE
T ss_pred chHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-ccccc
Confidence 333333444 457999999999999999886 47789999998855 5677888888765 35679
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+|..+. ....+++-+.+.+++||.+++.-
T Consensus 134 D~V~sRA~~---~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 134 DGVISRAFA---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp EEEECSCSS---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ceehhhhhc---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 999885442 35577888889999999998865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.12 E-value=3.4e-07 Score=73.57 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C------CCCCchh
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P------FDDETFD 164 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~------~~~~~fD 164 (257)
...+|||||+++|.-+..+++. ..++++.+|.+++ .+.++.++..+. + ..+++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4679999999999999999973 3579999999987 356677776543 1 1356799
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+.+.-. .+....++.+.+.|+|||++++.-
T Consensus 139 ~iFiDa~k--~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDADK--DNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECSCS--TTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEeccch--hhhHHHHHHHHhhcCCCcEEEEcc
Confidence 99875211 234467888889999999999963
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=2.7e-07 Score=76.92 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
....+||-||.|.|..+..+.+. +..+|+++|+++. ++.++.+|.... .-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 55689999999999999999886 4568999999966 345666666543 22346799998
Q ss_pred HHHhhccc------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHAL------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++..+... .-.++++.+++.|+|||++++...
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 76443321 245789999999999999999864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.10 E-value=3.6e-06 Score=67.59 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC----------CCcEEEecCCCCC----CCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY----------PPLVIEGDFHRQP----FDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~----------~~~~~~~d~~~~~----~~~~~fD~V~~~~ 170 (257)
+..+|||||++.|.-+..+++. ..++++|+|+++. ++.++.+|..+.. +.+..+|+|+-+.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 4679999999999877666542 3579999999754 5667888876543 3345678776643
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
-|+......-+ ++.+.|++||++++..
T Consensus 160 ~H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 160 AHANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp SCSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred CcchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 33222222223 4568999999999964
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.10 E-value=3.4e-07 Score=71.10 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCC---CCCCCCCchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFH---RQPFDDETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~---~~~~~~~~fD~V~~~ 169 (257)
.+.+|||+-||+|.++.....+|..+|+.||.+.. ...+...|.. .......+||+|+++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 46799999999999999999999889999999965 1122333322 223345579999886
Q ss_pred -HhhccccHHHHHHHHHH--hccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIER--TLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r--~LkpgG~l~i~~~ 199 (257)
=+. ....++.+..+.. +|+++|+++++.+
T Consensus 123 PPY~-~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFH-FNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHh-hhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 211 1223456666654 7999999999875
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.07 E-value=6e-07 Score=74.70 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=70.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~ 165 (257)
.....+||-||-|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... ...+++||+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 356679999999999999999886 5568999999966 345666675543 234568999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+.+..+... .-.++++.+++.|+|||++++....
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 9876433221 2357899999999999999998753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=7.6e-07 Score=73.47 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=70.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
.....+||-||-|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 356689999999999999999886 5679999999966 345666676542 2235689999
Q ss_pred HHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.+..+... .-.++++.+++.|+|||+++....
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 886443322 245789999999999999998764
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.3e-06 Score=72.31 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=67.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
.....+||-||-|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 356689999999999999999986 5679999999965 456666665543 2234689999
Q ss_pred HHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++..+... .-.++++.+++.|+|||++++...
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 886443222 233688999999999999999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.94 E-value=6e-07 Score=75.21 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=64.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
....+||-||.|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 55679999999999999999986 4568999999966 234444444432 12356799998
Q ss_pred HHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+..+... .-.++++.+++.|+|||+++....
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 76433222 234688999999999999999864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.93 E-value=2.2e-06 Score=66.27 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=75.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCC-----CCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQP-----FDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~-----~~~~~fD~V~~~ 169 (257)
..+++|+.++|..||.|..+..+.+.. ++|+|+|.++. ...++++++.++. ...+.+|.|+.+
T Consensus 14 l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D 92 (182)
T d1wg8a2 14 LAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD 92 (182)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence 346889999999999999999998864 59999999976 3456666666542 234567776553
Q ss_pred ---Hhhccc-------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 170 ---VFDHAL-------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 170 ---~l~h~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
...++. .....|......|++||.+++.+.... ....+.++|++.++.
T Consensus 93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~-----------Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL-----------EDRVVKRFLRESGLK 150 (182)
T ss_dssp CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH-----------HHHHHHHHHHHHCSE
T ss_pred ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc-----------hhHHHHHHHhhccce
Confidence 222232 233567888899999999998763110 223466677765543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=2.7e-05 Score=66.07 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC----
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ---- 156 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~---- 156 (257)
..+...........++.+|||+-||.|.++..|++.. .+|+|+|.++. ++.++.++..+.
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence 3333333333345678899999999999999999865 49999999966 567788877653
Q ss_pred CCCCCchhHHHHH----HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 157 PFDDETFDFEFSN----VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 157 ~~~~~~fD~V~~~----~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.....++|+|+.+ .+ .+.++.+.+ ++|.-+++|+.
T Consensus 277 ~~~~~~~d~vilDPPR~G~------~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 277 PWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp GGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEES
T ss_pred hhhhccCceEEeCCCCccH------HHHHHHHHH-cCCCEEEEEeC
Confidence 2234668887665 22 145666655 37777777775
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.76 E-value=1.1e-05 Score=67.63 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=67.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
.++|++|||+.||.|.=+..+++. ..+.++++|+++. ++.....|....+..+..||.|+.+
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 578999999999999998888764 4568999999966 3444555666566566789987442
Q ss_pred ------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++..-+ -..+.+....+.|||||.++-+|+.
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 221111 1235678899999999999999874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=1.9e-05 Score=64.08 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPF 158 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~ 158 (257)
...++....+.+++.|||||||+|.++..|++.+. +|+++|+++. ++.++.+|+...++
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 33444445567889999999999999999998764 9999999965 45677888877654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.60 E-value=7.7e-06 Score=65.73 Aligned_cols=86 Identities=12% Similarity=-0.010 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCC---CCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF---DDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~---~~~~fD~V~~~~ 170 (257)
.+.+++|||+|.|.-+..++- .+..+++-+|.+.. ++.++...+++... ..++||+|+|..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 567999999999999999886 57789999998855 45666666665432 235799998853
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+. ....+++-+...+++||.+++.-
T Consensus 150 va---~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 150 VA---RLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CS---CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh---CHHHHHHHHhhhcccCCEEEEEC
Confidence 32 35578888999999999988864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.45 E-value=6.1e-05 Score=65.51 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc----C----------CCcEEEecCCCC-----------------CCcEEEecCCCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRV----G----------VSDSVGIDLVPY-----------------PPLVIEGDFHRQ 156 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~----~----------~~~v~gvD~s~~-----------------~~~~~~~d~~~~ 156 (257)
...+.+|+|-+||+|.++..+.+. . ...++|+|+++. ...+..+|....
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~ 239 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 239 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh
Confidence 356789999999999999877652 1 135899999865 234566666544
Q ss_pred CCCCCchhHHHHH-Hh--hcc--------------cc-HHHHHHHHHHhccCCcEEEEEecc
Q 025148 157 PFDDETFDFEFSN-VF--DHA--------------LY-PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 157 ~~~~~~fD~V~~~-~l--~h~--------------~~-~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+ +...||+|++| =+ ... .+ ...++..+.+.||+||.+++.+|.
T Consensus 240 ~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 240 E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred h-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 3 45679999987 11 110 01 124789999999999999999874
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=9.6e-05 Score=60.55 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=51.9
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~ 162 (257)
....+....+.+++.|||||+|.|.++..|++.+. +|+++|+++. ++.++.+|+...+++.
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~-- 86 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF-- 86 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--
Confidence 33444445567889999999999999999999874 9999999854 4568889998876654
Q ss_pred hhHHHHH
Q 025148 163 FDFEFSN 169 (257)
Q Consensus 163 fD~V~~~ 169 (257)
++.|++|
T Consensus 87 ~~~vV~N 93 (278)
T d1zq9a1 87 FDTCVAN 93 (278)
T ss_dssp CSEEEEE
T ss_pred hhhhhcc
Confidence 3456665
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00011 Score=60.55 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCC--------------CcEEEecCCCC--CCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYP--------------PLVIEGDFHRQ--PFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~--------------~~~~~~d~~~~--~~~~~~fD~V~~~- 169 (257)
.+++.+|||+.+|.|.=+..+++. ..+.|+++|+++.. ......+.... ....+.||.|+.+
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 478899999999999999999875 34689999999871 12222222211 1234579987442
Q ss_pred ------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++..-++ ..+++..+.+.|||||.++-+|+.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 3322111 235678888899999999999874
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00023 Score=58.69 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=60.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCC---CchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDD---ETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~---~~fD~V~ 167 (257)
.++|.+|||++||+|.-+..+++. +.+.|+++|+++. ++.+...|...+...+ +.||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 477899999999999988888764 4568999999965 4556667776654322 4688774
Q ss_pred HH-------Hhhccc-----------------cH-HHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN-------VFDHAL-----------------YP-DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~-------~l~h~~-----------------~~-~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.+ ++..-+ .. .+.+.... .|||||.++-+|+.
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 43 222111 00 12333333 47999999988864
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00016 Score=64.55 Aligned_cols=93 Identities=17% Similarity=0.073 Sum_probs=60.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc----C---------------CCcEEEecCCCCC--------------------CcE
Q 025148 108 LSNESKALCIGARVGQEVEALKRV----G---------------VSDSVGIDLVPYP--------------------PLV 148 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~v~gvD~s~~~--------------------~~~ 148 (257)
...+.+|+|-+||+|.++..+.+. . ...++|+|+++.. ...
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~ 241 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 241 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchh
Confidence 456789999999999998766542 1 1258999998651 112
Q ss_pred EEecCCCCC-CCCCchhHHHHH---Hhhccc-----------c-HHHHHHHHHHhccCCcEEEEEecc
Q 025148 149 IEGDFHRQP-FDDETFDFEFSN---VFDHAL-----------Y-PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 149 ~~~d~~~~~-~~~~~fD~V~~~---~l~h~~-----------~-~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
..++....+ ....+||+|++| ....-. + ...+++.+.+.||+||++.+.+|.
T Consensus 242 ~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 242 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence 222222111 233579999887 111111 1 124789999999999999999984
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.38 E-value=0.00035 Score=59.58 Aligned_cols=86 Identities=15% Similarity=0.009 Sum_probs=58.9
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCCCCc------------------------------EEEecCCCCC-
Q 025148 110 NESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPYPPL------------------------------VIEGDFHRQP- 157 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~------------------------------~~~~d~~~~~- 157 (257)
++.+|||..||+|..+...+. .+..+|++.|+|+..+. +.+.|.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999997665 56668999999977111 1111111110
Q ss_pred CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 158 FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 158 ~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
-..+.||+|..+ -+..|..++....+.++.||.|.++.
T Consensus 125 ~~~~~fDvIDiD---PfGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLD---PFGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEEC---CSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCC---CCCCcHHHHHHHHHHhccCCEEEEEe
Confidence 012357766443 23456789999999999999999985
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.15 E-value=0.0067 Score=50.93 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=56.8
Q ss_pred CeEEEECCCCCHHHHHH--------HH---------cCCCcEEEecCCCC----------------C---CcEEEecCCC
Q 025148 112 SKALCIGARVGQEVEAL--------KR---------VGVSDSVGIDLVPY----------------P---PLVIEGDFHR 155 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l--------~~---------~~~~~v~gvD~s~~----------------~---~~~~~~d~~~ 155 (257)
-+|.|+||.+|..+..+ .+ .+..+|+--|+-.. . +..+-+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 57999999999887422 11 12235566665433 1 1224455666
Q ss_pred CCCCCCchhHHHH-HHhhcccc---------------------------------HHHHHHHHHHhccCCcEEEEEec
Q 025148 156 QPFDDETFDFEFS-NVFDHALY---------------------------------PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 156 ~~~~~~~fD~V~~-~~l~h~~~---------------------------------~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
--||+++.|+++| .++|++.. ...+|+.=.+-|+|||.+++...
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 6789999999988 47777531 22355555567899999999863
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.13 E-value=0.0021 Score=47.96 Aligned_cols=89 Identities=15% Similarity=0.029 Sum_probs=53.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCCC----------CCCchh
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQPF----------DDETFD 164 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~~----------~~~~fD 164 (257)
+..++++++||-+|||. |..+..+++...++|+++|.+++.. .....+...... ..+.+|
T Consensus 21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred HhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 44568899999999984 6666666665446999999987621 111111111000 011233
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+ +... -...++...+.|+++|.+++.-
T Consensus 101 ~vi----d~~g-~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 101 VTI----DCSG-NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp EEE----ECSC-CHHHHHHHHHHSCTTCEEEECS
T ss_pred eee----ecCC-ChHHHHHHHHHHhcCCceEEEe
Confidence 332 2221 2357888899999999988754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.81 E-value=0.0016 Score=49.16 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=55.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC---------CcEEEecCCCCCC--------CCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP---------PLVIEGDFHRQPF--------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~---------~~~~~~d~~~~~~--------~~~~fD~ 165 (257)
...+++|++||=+|||. |..+..+++. +..+|+++|.+++. ..++ +..+.++ ....+|+
T Consensus 22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i--~~~~~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL--NYKNGHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEE--CGGGSCHHHHHHHHTTTSCEEE
T ss_pred HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccc--cccchhHHHHHHHHhhccCcce
Confidence 45578999999999987 7777777775 54589999998762 1222 1111110 1122554
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-. ... ...+++..+.++|+|.+++.
T Consensus 100 vid~----~g~-~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 100 VIMA----GGG-SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEC----SSC-TTHHHHHHHHEEEEEEEEEC
T ss_pred EEEc----cCC-HHHHHHHHHHHhcCCEEEEE
Confidence 4332 211 25678888999999999885
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.45 E-value=0.0034 Score=47.05 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=53.9
Q ss_pred HHhhcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCC---------CCcEEEecCCCC-----CCCCCchhHH
Q 025148 103 KRKKLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPY---------PPLVIEGDFHRQ-----PFDDETFDFE 166 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~---------~~~~~~~d~~~~-----~~~~~~fD~V 166 (257)
+....++++++||=+|||. |..+..+++ .+...|+.+|.++. ...++..+-.+. .+.++.+|+|
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 3445578999999999975 334455555 46667888898875 123332221111 0112345554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+- ... -...++...+.++|+|.+++.
T Consensus 101 id----~~G-~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 101 LE----STG-SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EE----CSC-CHHHHHHHHHTEEEEEEEEEC
T ss_pred EE----cCC-cHHHHHHHHhcccCceEEEEE
Confidence 32 221 225778889999999998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.41 E-value=0.01 Score=44.43 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCCCCC---------C
Q 025148 100 DDLKRKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQPF---------D 159 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~~~---------~ 159 (257)
...+....+++|++||=+|||. |..+..+++. +...|+.+|.++... .++ +....+. .
T Consensus 18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i--~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL--NPRELDKPVQDVITELT 95 (174)
T ss_dssp HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE--CGGGCSSCHHHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCccc--CCccchhhhhhhHhhhh
Confidence 3334455678999999999998 7777777775 666899999998721 122 1111110 0
Q ss_pred CCchhHHHHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 160 DETFDFEFSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 160 ~~~fD~V~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
.+.+|+ +++.... ...+.+..+.+++| |.+++.
T Consensus 96 ~~G~d~----vie~~G~-~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 96 AGGVDY----SLDCAGT-AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp TSCBSE----EEESSCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred cCCCcE----EEEeccc-chHHHHHHHHhhcCCeEEEec
Confidence 011222 2222222 35789999999996 998875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0033 Score=47.07 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=54.1
Q ss_pred HhhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCCCCC--------CCCchh
Q 025148 104 RKKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHRQPF--------DDETFD 164 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~~~~--------~~~~fD 164 (257)
....+++|++||-.|+ |.|..+..+++.-.++|++++.+++. ..++ |..+..+ ..+.+|
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCTTCEE
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccc--ccccccHHHHhhhhhccCCce
Confidence 3445789999999997 34566667777544699999877651 1222 2222111 123455
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+..+ . ...+++..++|+|+|.++..
T Consensus 100 ~v~d~~----g--~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 100 IIIEML----A--NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEESC----H--HHHHHHHHHHEEEEEEEEEC
T ss_pred EEeecc----c--HHHHHHHHhccCCCCEEEEE
Confidence 554432 1 24678888999999998874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.0047 Score=46.54 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=52.7
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCCC-----------CCCchhH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQPF-----------DDETFDF 165 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~~-----------~~~~fD~ 165 (257)
..+++|++||-+|||. |..+..+++. |..+|+++|.+++.... ...+..+... ....+|+
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred hCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceE
Confidence 3467899999999985 6666677765 54489999998762111 1112211110 1122444
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+- .... ...++...+.|++||.+++.
T Consensus 104 vid----~vG~-~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 104 ILE----ATGD-SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp EEE----CSSC-TTHHHHHHHHEEEEEEEEEC
T ss_pred Eee----cCCc-hhHHHHHHHHhcCCCEEEEE
Confidence 432 2211 24678889999999998765
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.01 E-value=0.02 Score=43.67 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=56.8
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCCC--------CcEEEecCCCCCC--------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPYP--------PLVIEGDFHRQPF--------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~--------~~~~fD~V 166 (257)
...+++|++||-+|||. |..+..+++ .+..+|+++|.++.. .... .+..+.++ ....+|++
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~-~~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA-DLSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE-ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE-EeCCCcCHHHHHHHHhCCCCcEEE
Confidence 45578999999999998 656666665 466699999998761 1111 12111111 12234554
Q ss_pred HHHH-------hhc---cccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNV-------FDH---ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~-------l~h---~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+-.+ .++ .....+.++.+.+.++|||.+++.
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 3210 001 112346899999999999999876
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.98 E-value=0.0033 Score=46.63 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=51.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCCCCCCchhHHHHH-----
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQPFDDETFDFEFSN----- 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~~~~~~fD~V~~~----- 169 (257)
+..++++++||=+|||. |..+..+++....+|+++|.++... .++.. .+ ++..+.+...
T Consensus 22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~--~~----~~~~~~~~~~~~g~~ 95 (166)
T d1llua2 22 QTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNA--RQ----EDPVEAIQRDIGGAH 95 (166)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEET--TT----SCHHHHHHHHHSSEE
T ss_pred HhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccc--cc----hhHHHHHHHhhcCCc
Confidence 34568899999999976 5556666665346999999987621 22211 11 1111111110
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++..... ...++...+.|++||.+++.
T Consensus 96 ~~i~~~~~-~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 96 GVLVTAVS-NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEECCSC-HHHHHHHHTTEEEEEEEEEC
T ss_pred cccccccc-chHHHHHHHHhcCCcEEEEE
Confidence 1111112 25678889999999998874
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.016 Score=47.78 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=37.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQ 156 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~ 156 (257)
.+..|||||+|.|.++..|.+. ...+|+++|+++. ++.++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence 4678999999999999999875 3348999999854 567777776543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.011 Score=43.88 Aligned_cols=89 Identities=16% Similarity=0.062 Sum_probs=52.5
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCc---------EEEecCCCCC--------CCCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPL---------VIEGDFHRQP--------FDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~---------~~~~d~~~~~--------~~~~~fD~ 165 (257)
+..++++++||=+|||. |..+..+++. +..+|+++|.++.... +...+-.+.. -....+|+
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence 44568899999999986 4555555554 6558999999876221 1111111000 00012333
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+ +.... ...++...+.+++||.+++.-
T Consensus 101 vi----d~~G~-~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 101 TI----ECTGA-EASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp EE----ECSCC-HHHHHHHHHHSCTTCEEEECS
T ss_pred EE----eccCC-chhHHHHHHHhcCCCEEEEEe
Confidence 22 22222 357889999999999988854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.72 E-value=0.01 Score=43.72 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=50.8
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC--------cEEEecCCCCCC-------CCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP--------LVIEGDFHRQPF-------DDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~--------~~~~~d~~~~~~-------~~~~fD~V~~~ 169 (257)
..++++++||=.|||+ |..+..+++....+|+++|.+++.. .... +..+.++ .++.+|+|++.
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVV-NPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEE-CTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceec-ccccchhhhhcccccCCCceEEeec
Confidence 3468899999999987 4445555555445999999887621 1111 1111100 01112222221
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+ -...+....+.|+|||.+++.
T Consensus 102 ~------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 102 V------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEEC
T ss_pred C------CHHHHHHHHHHhccCCceEec
Confidence 1 236788999999999998885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.64 E-value=0.096 Score=38.74 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=32.5
Q ss_pred HHHHHhhcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCC
Q 025148 100 DDLKRKKLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPY 144 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~ 144 (257)
..++....+++|++||=+|||. |..+..+++ .+..+|+++|.+++
T Consensus 17 ~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~ 63 (174)
T d1p0fa2 17 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD 63 (174)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred HHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence 3334455678999999999986 344444555 47678999999987
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.88 E-value=0.022 Score=42.70 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=59.3
Q ss_pred HHHhhcCCCCCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCC--C--CCCCCCchhHH
Q 025148 102 LKRKKLLSNESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFH--R--QPFDDETFDFE 166 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~--~--~~~~~~~fD~V 166 (257)
+......+++++||=-|++. |.++..+++...++|+++.-+++. ..++..+-. + ....++.+|+|
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEE
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEE
Confidence 44456667788999998653 567777777656699999877662 122211110 0 01234567776
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+-++-. ..+.+..++|++||+++..-+.
T Consensus 103 id~vgg------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 103 VDPVGG------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EECSTT------TTHHHHHHTEEEEEEEEECSCC
T ss_pred EEcCCc------hhHHHHHHHhCCCceEEEeecc
Confidence 654433 4678899999999999987543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.69 E-value=0.11 Score=38.61 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=31.4
Q ss_pred HHHhhcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPY 144 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~ 144 (257)
++....+++|+.||=+|||. |..+..+++ .+..+|+++|.+++
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence 33445578999999999986 344444455 36679999999987
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.50 E-value=0.014 Score=43.28 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=51.0
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCC---------CCcEEEecCCCCC-----CCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPY---------PPLVIEGDFHRQP-----FDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~---------~~~~~~~d~~~~~-----~~~~~fD~V~~~~ 170 (257)
.+++++.||-+|||. |..+..+++ .+...|+++|.+++ ...++..+-.... ...+.+|+|+-.
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~- 107 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDF- 107 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEES-
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEe-
Confidence 367899999999986 344455555 47678999999865 1222221110000 011224443321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
... ...++...+.|++||.+++.
T Consensus 108 ---~g~-~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 108 ---VGS-QATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp ---SCC-HHHHHHGGGGEEEEEEEEEC
T ss_pred ---cCc-chHHHHHHHHHhCCCEEEEE
Confidence 111 24688889999999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.016 Score=42.79 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=53.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCCC-CCCCCchhHHHHHHhhc
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHRQ-PFDDETFDFEFSNVFDH 173 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~~-~~~~~~fD~V~~~~l~h 173 (257)
...+++|++||=+|||. |.++..+++.-.++++++|.+++. ..++...-.+. ....+.+|+++-.
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~---- 100 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNT---- 100 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEEC----
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeee----
Confidence 45578999999999975 666666676544588889887662 12221111110 0112346655332
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
... ...++...+.|+++|.+++.
T Consensus 101 ~g~-~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 101 VAA-PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CSS-CCCHHHHHTTEEEEEEEEEC
T ss_pred eec-chhHHHHHHHHhcCCEEEEe
Confidence 111 13466778899999998885
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.82 E-value=0.024 Score=42.22 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=51.7
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCC--------C-CcEEEecCCCCC--------CCCCchhH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPY--------P-PLVIEGDFHRQP--------FDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~--------~-~~~~~~d~~~~~--------~~~~~fD~ 165 (257)
...+++|++||=.|+ |.|..+..+++...+++++++-+++ . ..++ +..+.. .....||+
T Consensus 20 ~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi--~~~~~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 20 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVG--DSRSVDFADEILELTDGYGVDV 97 (183)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEE--ETTCSTHHHHHHHHTTTCCEEE
T ss_pred HhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccc--cCCccCHHHHHHHHhCCCCEEE
Confidence 445688999999884 2356666666654458888876644 1 1222 111111 12234666
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+..+- .+.++++.++|+++|+++..
T Consensus 98 v~d~~g------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 98 VLNSLA------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred EEeccc------chHHHHHHHHhcCCCEEEEE
Confidence 655332 15678888999999998875
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.58 E-value=0.046 Score=40.72 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=53.7
Q ss_pred HhhcCCCCCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCCCCCCCCchhHHHH---H
Q 025148 104 RKKLLSNESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHRQPFDDETFDFEFS---N 169 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~~~~~~~~fD~V~~---~ 169 (257)
....+++|++||=.|++. |..+..+++...++|++++-+++. ..++..+ + ++..+.+.. .
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~--~----~~~~~~~~~~~~~ 96 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYK--T----VNSLEEALKKASP 96 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETT--S----CSCHHHHHHHHCT
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccc--c----ccHHHHHHHHhhc
Confidence 345568999999888864 566667777655799999877651 1222111 1 111222211 0
Q ss_pred -----HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 -----VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 -----~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+++.+. .+.+++..+.|++||.+++.
T Consensus 97 ~Gvd~v~D~vG--~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 97 DGYDCYFDNVG--GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp TCEEEEEESSC--HHHHHHHGGGEEEEEEEEEC
T ss_pred CCCceeEEecC--chhhhhhhhhccCCCeEEee
Confidence 333332 36788999999999998875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.32 E-value=0.018 Score=42.52 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=52.3
Q ss_pred hhcCCCCCeEEEECCC--CCHHHHHHHH-cCCCcEEEecCCCCC---------CcEEEecCCCCC------CCCCchhHH
Q 025148 105 KKLLSNESKALCIGAR--VGQEVEALKR-VGVSDSVGIDLVPYP---------PLVIEGDFHRQP------FDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG--~G~~~~~l~~-~~~~~v~gvD~s~~~---------~~~~~~d~~~~~------~~~~~fD~V 166 (257)
+..++++++||=+||+ .|..+..+++ .+..+|+++|.+++. ..++..+..+.. ...+.||+|
T Consensus 22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhh
Confidence 4457889999999974 2444444444 476799999998762 122222211110 012335554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+..+ .-...++...+.++|||.+++.
T Consensus 102 id~~-----g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 102 IDLN-----NSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EESC-----CCHHHHTTGGGGEEEEEEEEEC
T ss_pred hccc-----ccchHHHhhhhhcccCCEEEEe
Confidence 3321 1235677788999999998875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.033 Score=41.32 Aligned_cols=86 Identities=12% Similarity=0.024 Sum_probs=54.3
Q ss_pred hhcCCCCCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCCCCC--------CCCchhH
Q 025148 105 KKLLSNESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHRQPF--------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~~~~--------~~~~fD~ 165 (257)
...++++++||=.|+|. |..+..+++...++|+++|.+++. ..++ |..+.++ ..+.+|+
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi--~~~~~d~~~~v~~~t~g~g~d~ 100 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVI--NYREEDLVERLKEITGGKKVRV 100 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEE--ECCCCCHHHHHHHHhCCCCeEE
Confidence 34568899999997764 667777777645699999999762 2222 2222111 1234555
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+..+-. +.+....+.++++|.+++..
T Consensus 101 v~d~~g~------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 101 VYDSVGR------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp EEECSCG------GGHHHHHHTEEEEEEEEECC
T ss_pred EEeCccH------HHHHHHHHHHhcCCeeeecc
Confidence 4332211 35678889999999877653
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.84 E-value=0.018 Score=45.69 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=43.0
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
.+|||.-||.|..+..++..| ++|+++|-++. ++.++++|..+. .-..++||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 489999999999999999987 49999999864 345677775442 2224568888
Q ss_pred HHH
Q 025148 167 FSN 169 (257)
Q Consensus 167 ~~~ 169 (257)
+.+
T Consensus 169 YlD 171 (250)
T d2oyra1 169 YLD 171 (250)
T ss_dssp EEC
T ss_pred EEC
Confidence 665
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.10 E-value=0.15 Score=40.75 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++.+++. ..-.+|+.|||.=||+|..+.+..+.+. +.+|+|++++
T Consensus 238 ~L~~rlI~-~~s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~ 283 (320)
T d1booa_ 238 KLPEFFIR-MLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPE 283 (320)
T ss_dssp HHHHHHHH-HHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHhhh-hcccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHH
Confidence 45555553 3357899999999999999999888875 9999999876
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.94 E-value=0.22 Score=36.32 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHHhhcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCCC---------CcEEEecCCCCC-------CCCCch
Q 025148 102 LKRKKLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPYP---------PLVIEGDFHRQP-------FDDETF 163 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~---------~~~~~~d~~~~~-------~~~~~f 163 (257)
+.....+++|++||=+|||. |..+..+++ .+...|+++|.+++. ..++...-.+.. ...+.+
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 33445678999999999973 333444444 476789999998772 222211100000 001223
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+|+- ... ....++.....+++||.+++.
T Consensus 100 D~vid----~~G-~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 100 DYSFE----CIG-NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp SEEEE----CSC-CHHHHHHHHHTBCTTTCEEEE
T ss_pred cEeee----cCC-CHHHHHHHHHhhcCCceeEEE
Confidence 44332 221 235778889999999876654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.99 E-value=0.24 Score=38.69 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++. ..-.+|+.|||-=||+|..+.+..+.+. +.+|+|+++.
T Consensus 195 ~L~~~~I~-~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~ 240 (279)
T d1eg2a_ 195 AVIERLVR-ALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPV 240 (279)
T ss_dssp HHHHHHHH-HHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTH
T ss_pred hHHHHHHH-hhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHH
Confidence 34444443 3347899999999999999999888776 9999999876
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.88 E-value=0.24 Score=38.23 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++ +..-.+|+.|||.=||+|..+.+..+.+. +.+|+|++++
T Consensus 200 ~L~~~lI-~~~s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~ 245 (256)
T d1g60a_ 200 DLIERII-RASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAE 245 (256)
T ss_dssp HHHHHHH-HHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred hHHHHHH-HHhCCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHH
Confidence 3444444 33347899999999999999999888775 9999999864
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.53 E-value=0.12 Score=38.09 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred HHHhhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEec-C--CC-CCCCCCchhHH
Q 025148 102 LKRKKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGD-F--HR-QPFDDETFDFE 166 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d-~--~~-~~~~~~~fD~V 166 (257)
+......++++.||=-|++ -|..+..+++.-.++|+++.-+++. ..++..+ . .. .....+.+|+|
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~v 94 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGA 94 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEE
Confidence 4445555667788877753 3566777777644699999888762 1222211 0 00 11233557776
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+-.+-. ..+.+..+.|+++|.+++.-
T Consensus 95 id~vgg------~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 95 VDPVGG------KQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp EESCCT------HHHHHHHTTEEEEEEEEECC
T ss_pred EecCcH------HHHHHHHHHhccCceEEEee
Confidence 554332 57788999999999998754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.48 E-value=0.026 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHhccCCcEEEEEec
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.....+.+++|+|||||.+++...
T Consensus 49 ~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 49 WAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEEecC
Confidence 345678999999999999998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.97 E-value=0.19 Score=36.67 Aligned_cols=88 Identities=15% Similarity=0.034 Sum_probs=53.6
Q ss_pred hhcCCCCCeEEEECCC-CCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCC-CC-CCCCCchhHHHHH--H
Q 025148 105 KKLLSNESKALCIGAR-VGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFH-RQ-PFDDETFDFEFSN--V 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~-~~-~~~~~~fD~V~~~--~ 170 (257)
...+++|++||-+||| .|..+..+++...++|+++|.+++. ..++...-. +. .-..+.+|+|+.. .
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 3456899999999998 4666677776534599999999872 222221111 11 1122457765431 1
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ...+....+.|+|+|++++.
T Consensus 102 ~~-----~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 102 LT-----DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp ST-----TCCTTTGGGGEEEEEEEEEC
T ss_pred Cc-----cchHHHHHHHhhccceEEEe
Confidence 11 01245577899999998875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=85.73 E-value=0.0089 Score=44.52 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=49.5
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHHHHhhccc-c
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFSNVFDHAL-Y 176 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~-~ 176 (257)
+..+|+=||+|. |..+...+..-.++|+.+|.+++ .+.....+-..+.-.-...|+|++.++-.=. -
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a 110 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 110 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence 356999999997 66666666654469999999865 2222222211111001235666665432111 2
Q ss_pred HHHHHHHHHHhccCCcEEE
Q 025148 177 PDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~ 195 (257)
|.-+=+++.+.+|||.+++
T Consensus 111 P~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 111 PILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCBCHHHHTTSCTTCEEE
T ss_pred CeeecHHHHhhcCCCcEEE
Confidence 2223378888899987655
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.21 E-value=0.2 Score=37.09 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=52.8
Q ss_pred hhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCC--CCCCCCchhHHHHHHh
Q 025148 105 KKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHR--QPFDDETFDFEFSNVF 171 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~--~~~~~~~fD~V~~~~l 171 (257)
.....+++.||=.|+. .|..+..+++.-..+|+++.-+++. ..++..+-.+ -.+....+|.|+-.+.
T Consensus 26 ~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg 105 (177)
T d1o89a2 26 AGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG 105 (177)
T ss_dssp TTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred hCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc
Confidence 3344455678876642 3556667777655699999888662 1222222111 1233455666543333
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ..+.+..+.|+++|.++..-
T Consensus 106 g------~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 106 D------KVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp H------HHHHHHHHTEEEEEEEEECC
T ss_pred h------HHHHHHHHHhccccceEeec
Confidence 2 46788999999999998863
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.80 E-value=0.33 Score=36.00 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=50.4
Q ss_pred hhcCCCC--CeEEEECC--CCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCC-----CCCCchh
Q 025148 105 KKLLSNE--SKALCIGA--RVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQP-----FDDETFD 164 (257)
Q Consensus 105 ~~~~~~~--~~vLDiGc--G~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~-----~~~~~fD 164 (257)
...++++ +.||-.|+ |.|..+..+++. |...|++++.+++ ...++...-.+.. ..++.+|
T Consensus 23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEE
T ss_pred HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCce
Confidence 3345655 67998884 568899999985 5546777766644 1112211111100 0112344
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+-. +. .+.++...++|+++|+++..
T Consensus 103 vv~D~----vG--g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 103 VYFDN----VG--GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEES----SC--HHHHHHHHTTEEEEEEEEEC
T ss_pred EEEec----CC--chhHHHHhhhccccccEEEe
Confidence 44332 22 25788899999999999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=83.67 E-value=0.12 Score=39.97 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+.+++++|+|||||.+++..
T Consensus 53 ~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 53 TYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhhccccCccccccc
Confidence 3468899999999999887654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.67 E-value=0.39 Score=34.70 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred eEEEECCCC--CHHHHHHHHcC-CCcEEEecCCCCC---------CcEEEecCCCCCCCCCchhHHHHHHhhccccHHHH
Q 025148 113 KALCIGARV--GQEVEALKRVG-VSDSVGIDLVPYP---------PLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKF 180 (257)
Q Consensus 113 ~vLDiGcG~--G~~~~~l~~~~-~~~v~gvD~s~~~---------~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~ 180 (257)
+|+=||||. |.++..|.+.+ ..+|+|+|.+++. +.....+... ..+...|+|+..+= ...-.+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~dlIila~p--~~~~~~v 78 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAK--VEDFSPDFVMLSSP--VRTFREI 78 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGG--GGGTCCSEEEECSC--HHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhh--hhccccccccccCC--chhhhhh
Confidence 588899985 33455565555 3589999998751 1111111111 12234576533210 0113367
Q ss_pred HHHHHHhccCCcEEE
Q 025148 181 VMEIERTLKPGGVCV 195 (257)
Q Consensus 181 l~~~~r~LkpgG~l~ 195 (257)
+.++...++++..++
T Consensus 79 l~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 79 AKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHSCTTCEEE
T ss_pred hhhhhcccccccccc
Confidence 788888888765544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.22 E-value=0.13 Score=37.74 Aligned_cols=86 Identities=17% Similarity=0.065 Sum_probs=50.7
Q ss_pred hhcCCCCCeEEEECC-CC-CHHHHHHHHcCCCcEEEecCCCCCCcEE-------EecCCCCC---CCCCchhHHHHHHhh
Q 025148 105 KKLLSNESKALCIGA-RV-GQEVEALKRVGVSDSVGIDLVPYPPLVI-------EGDFHRQP---FDDETFDFEFSNVFD 172 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~-------~~d~~~~~---~~~~~fD~V~~~~l~ 172 (257)
+..++++++||=.|+ |. |..+..+++...++|++++.+++..... ..|..+.. -..+.+|+|+-.
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~--- 98 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV--- 98 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC---
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccc---
Confidence 445689999999985 33 5666777776456999999887622111 11111110 011235554331
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ..+....+.|+|||.++..
T Consensus 99 -~G---~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 99 -RG---KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp -SC---TTHHHHHTTEEEEEEEEEC
T ss_pred -cc---hhHHHHHHHHhcCCcEEEE
Confidence 11 2356778999999998864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.09 E-value=0.092 Score=42.08 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHhccCCcEEEEEec
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
...+.+++++|+||++|.+++...
T Consensus 60 ~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 60 WFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCcccCccccccc
Confidence 345688999999999999999764
|